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@article{DBLP:journals/tcbb/AbateVDSMAT12,
author = {Alessandro Abate and
St{\'{e}}phane Vincent and
Roel Dobbe and
Alberto Silletti and
Neal Master and
Jeffrey D. Axelrod and
Claire J. Tomlin},
title = {A Mathematical Model to Study the Dynamics of Epithelial Cellular
Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1607--1620},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.126},
doi = {10.1109/TCBB.2012.126},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AbateVDSMAT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AcharyaJDRZ12,
author = {Lipi R. Acharya and
Thair Judeh and
Zhansheng Duan and
Michael G. Rabbat and
Dongxiao Zhu},
title = {{GSGS:} {A} Computational Approach to Reconstruct Signaling Pathway
Structures from Gene Sets},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {438--450},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.143},
doi = {10.1109/TCBB.2011.143},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AcharyaJDRZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AkutsuKMT12,
author = {Tatsuya Akutsu and
Sven Kosub and
Avraham A. Melkman and
Takeyuki Tamura},
title = {Finding a Periodic Attractor of a Boolean Network},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1410--1421},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.87},
doi = {10.1109/TCBB.2012.87},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AkutsuKMT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AmbertC12,
author = {Kyle H. Ambert and
Aaron M. Cohen},
title = {k-Information Gain Scaled Nearest Neighbors: {A} Novel Approach to
Classifying Protein-Protein Interaction-Related Documents},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {305--310},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.32},
doi = {10.1109/TCBB.2011.32},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AmbertC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AminFJ12,
author = {Mohammad Shafkat Amin and
Russell L. Finley Jr. and
Hasan M. Jamil},
title = {Top-k Similar Graph Matching Using TraM in Biological Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1790--1804},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.90},
doi = {10.1109/TCBB.2012.90},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/AminFJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AndreottiKR12,
author = {Sandro Andreotti and
Gunnar W. Klau and
Knut Reinert},
title = {Antilope - {A} Lagrangian Relaxation Approach to the de novo Peptide
Sequencing Problem},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {385--394},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.59},
doi = {10.1109/TCBB.2011.59},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AndreottiKR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AngadiV12,
author = {Ulavappa B. Angadi and
M. Venkatesulu},
title = {Structural {SCOP} Superfamily Level Classification Using Unsupervised
Machine Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {601--608},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.114},
doi = {10.1109/TCBB.2011.114},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AngadiV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AnsariBVD12,
author = {Nadeem Ansari and
Riyue Bao and
Calin Voichita and
Sorin Draghici},
title = {Detecting Phenotype-Specific Interactions between Biological Processes
from Microarray Data and Annotations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1399--1409},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.65},
doi = {10.1109/TCBB.2012.65},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AnsariBVD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ArmanoL12,
author = {Giuliano Armano and
Filippo Ledda},
title = {Exploiting Intrastructure Information for Secondary Structure Prediction
with Multifaceted Pipelines},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {799--808},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.159},
doi = {10.1109/TCBB.2011.159},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ArmanoL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AshlockD12,
author = {Wendy Ashlock and
Suprakash Datta},
title = {Distinguishing Endogenous Retroviral LTRs from {SINE} Elements Using
Features Extracted from Evolved Side Effect Machines},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1676--1689},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.116},
doi = {10.1109/TCBB.2012.116},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AshlockD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AshtawyM12,
author = {Hossam M. Ashtawy and
Nihar R. Mahapatra},
title = {A Comparative Assessment of Ranking Accuracies of Conventional and
Machine-Learning-Based Scoring Functions for Protein-Ligand Binding
Affinity Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1301--1313},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.36},
doi = {10.1109/TCBB.2012.36},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/AshtawyM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BadaloniCS12,
author = {Silvana Badaloni and
Barbara Di Camillo and
Francesco Sambo},
title = {Qualitative Reasoning for Biological Network Inference from Systematic
Perturbation Experiments},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1482--1491},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.69},
doi = {10.1109/TCBB.2012.69},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BadaloniCS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BarnatBKSSVV12,
author = {Jiri Barnat and
Lubos Brim and
Adam Krejci and
Adam Streck and
David Safr{\'{a}}nek and
Martin Vejnar and
Tomas Vejpustek},
title = {On Parameter Synthesis by Parallel Model Checking},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {693--705},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.110},
doi = {10.1109/TCBB.2011.110},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BarnatBKSSVV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BelcastroGSSDOB12,
author = {Vincenzo Belcastro and
Francesco Gregoretti and
Velia Siciliano and
Michele Santoro and
Giovanni D'Angelo and
Gennaro Oliva and
Diego di Bernardo},
title = {Reverse Engineering and Analysis of Genome-Wide Gene Regulatory Networks
from Gene Expression Profiles Using High-Performance Computing},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {668--678},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.60},
doi = {10.1109/TCBB.2011.60},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BelcastroGSSDOB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BicegoLPFDPPM12,
author = {Manuele Bicego and
Pietro Lovato and
Alessandro Perina and
Marianna Fasoli and
Massimo Delledonne and
Mario Pezzotti and
Annalisa Polverari and
Vittorio Murino},
title = {Investigating Topic Models' Capabilities in Expression Microarray
Data Classification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1831--1836},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.121},
doi = {10.1109/TCBB.2012.121},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BicegoLPFDPPM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BogdanowiczG12,
author = {Damian Bogdanowicz and
Krzysztof Giaro},
title = {Matching Split Distance for Unrooted Binary Phylogenetic Trees},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {150--160},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.48},
doi = {10.1109/TCBB.2011.48},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BogdanowiczG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BokhariPJ12,
author = {Shahid H. Bokhari and
Laura W. Pomeroy and
Daniel Janies},
title = {Reassortment Networks and the Evolution of Pandemic {H1N1} Swine-Origin
Influenza},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {214--227},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.95},
doi = {10.1109/TCBB.2011.95},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BokhariPJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BonetLJ12,
author = {Maria Luisa Bonet and
Simone Linz and
Katherine St. John},
title = {The Complexity of Finding Multiple Solutions to Betweenness and Quartet
Compatibility},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {273--285},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.108},
doi = {10.1109/TCBB.2011.108},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BonetLJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BonnelM12,
author = {Nicolas Bonnel and
Pierre{-}Francois Marteau},
title = {{LNA:} Fast Protein Structural Comparison Using a Laplacian Characterization
of Tertiary Structure},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1451--1458},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.64},
doi = {10.1109/TCBB.2012.64},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BonnelM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BoucherO12,
author = {Christina Boucher and
Mohamed Omar},
title = {On the Hardness of Counting and Sampling Center Strings},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1843--1846},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.84},
doi = {10.1109/TCBB.2012.84},
timestamp = {Mon, 10 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BoucherO12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BurkittWRF12,
author = {Mark Burkitt and
Dawn C. Walker and
Daniela M. Romano and
Alireza Fazeli},
title = {Constructing Complex 3D Biological Environments from Medical Imaging
Using High Performance Computing},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {643--654},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.69},
doi = {10.1109/TCBB.2011.69},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BurkittWRF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BustamamBH12,
author = {Alhadi Bustamam and
Kevin Burrage and
Nicholas A. Hamilton},
title = {Fast Parallel Markov Clustering in Bioinformatics Using Massively
Parallel Computing on {GPU} with {CUDA} and {ELLPACK-R} Sparse Format},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {679--692},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.68},
doi = {10.1109/TCBB.2011.68},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BustamamBH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CamilloFTC12,
author = {Barbara Di Camillo and
Marco Falda and
Gianna Toffolo and
Claudio Cobelli},
title = {SimBioNeT: {A} Simulator of Biological Network Topology},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {592--600},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.116},
doi = {10.1109/TCBB.2011.116},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CamilloFTC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CampelloMS12,
author = {Ricardo J. G. B. Campello and
Davoud Moulavi and
J{\"{o}}rg Sander},
title = {A Simpler and More Accurate {AUTO-HDS} Framework for Clustering and
Visualization of Biological Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1850--1852},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.115},
doi = {10.1109/TCBB.2012.115},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CampelloMS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CavuslarCA12,
author = {Gizem {\c{C}}avuslar and
B{\"{u}}lent {\c{C}}atay and
Mehmet Serkan Apaydin},
title = {A Tabu Search Approach for the {NMR} Protein Structure-Based Assignment
Problem},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1621--1628},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.122},
doi = {10.1109/TCBB.2012.122},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CavuslarCA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChanCYW12,
author = {Raymond H. Chan and
Tony H. Chan and
Hau Man Yeung and
Roger Wei Wang},
title = {Composition Vector Method Based on Maximum Entropy Principle for Sequence
Comparison},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {79--87},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.45},
doi = {10.1109/TCBB.2011.45},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChanCYW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChaudharyBF12,
author = {Ruchi Chaudhary and
J. Gordon Burleigh and
David Fern{\'{a}}ndez{-}Baca},
title = {Fast Local Search for Unrooted Robinson-Foulds Supertrees},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1004--1013},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.47},
doi = {10.1109/TCBB.2012.47},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChaudharyBF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Chen12,
author = {Yi{-}Ping Phoebe Chen},
title = {Guest Editorial: Application and Development of Bioinformatics},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1265},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.96},
doi = {10.1109/TCBB.2012.96},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Chen12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenDW12,
author = {Zhi{-}Zhong Chen and
Fei Deng and
Lusheng Wang},
title = {Simultaneous Identification of Duplications, Losses, and Lateral Gene
Transfers},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1515--1528},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.79},
doi = {10.1109/TCBB.2012.79},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenDW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenHLSPR12,
author = {Xin Chen and
Xiaohua Hu and
Tze Yee Lim and
Xiajiong Shen and
E. K. Park and
Gail L. Rosen},
title = {Exploiting the Functional and Taxonomic Structure of Genomic Data
by Probabilistic Topic Modeling},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {980--991},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.113},
doi = {10.1109/TCBB.2011.113},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenHLSPR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenN12,
author = {Luonan Chen and
Michael K. Ng},
title = {Guest Editorial: Bioinformatics and Computational Systems Biology},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {945--946},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.76},
doi = {10.1109/TCBB.2012.76},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenW12,
author = {Zhi{-}Zhong Chen and
Lusheng Wang},
title = {Algorithms for Reticulate Networks of Multiple Phylogenetic Trees},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {372--384},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.137},
doi = {10.1109/TCBB.2011.137},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenWL12,
author = {Peng Chen and
Limsoon Wong and
Jinyan Li},
title = {Detection of Outlier Residues for Improving Interface Prediction in
Protein Heterocomplexes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1155--1165},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.58},
doi = {10.1109/TCBB.2012.58},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenWL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChenZ12,
author = {Jianer Chen and
Alexander Zelikovsky},
title = {Guest Editors' Introduction to the Special Section on Bioinformatics
Research and Applications},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1002--1003},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.77},
doi = {10.1109/TCBB.2012.77},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChenZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChengGLF12,
author = {Yi{-}Ming Cheng and
Srinivasa Murthy Gopal and
Sean M. Law and
Michael Feig},
title = {Molecular Dynamics Trajectory Compression with a Coarse-Grained Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {476--486},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.141},
doi = {10.1109/TCBB.2011.141},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChengGLF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChoiKWY12,
author = {Ickwon Choi and
Michael W. Kattan and
Brian J. Wells and
Changhong Yu},
title = {A Hybrid Approach to Survival Model Building Using Integration of
Clinical and Molecular Information in Censored Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1091--1105},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.31},
doi = {10.1109/TCBB.2012.31},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChoiKWY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CzeizlerMCBEP12,
author = {Eugen Czeizler and
Andrzej Mizera and
Elena Czeizler and
Ralph{-}Johan Back and
John E. Eriksson and
Ion Petre},
title = {Quantitative Analysis of the Self-Assembly Strategies of Intermediate
Filaments from Tetrameric Vimentin},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {885--898},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.154},
doi = {10.1109/TCBB.2011.154},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CzeizlerMCBEP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CzeizlerRP12,
author = {Eugen Czeizler and
Vladimir Rogojin and
Ion Petre},
title = {The Phosphorylation of the Heat Shock Factor as a Modulator for the
Heat Shock Response},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1326--1337},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.66},
doi = {10.1109/TCBB.2012.66},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CzeizlerRP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DeBlasioBZ12,
author = {Daniel DeBlasio and
Jocelyne Bruand and
Shaojie Zhang},
title = {A Memory Efficient Method for Structure-Based {RNA} Multiple Alignment},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {1--11},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.86},
doi = {10.1109/TCBB.2011.86},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DeBlasioBZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DegnanRS12,
author = {James H. Degnan and
Noah A. Rosenberg and
Tanja Stadler},
title = {A Characterization of the Set of Species Trees that Produce Anomalous
Ranked Gene Trees},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1558--1568},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.110},
doi = {10.1109/TCBB.2012.110},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DegnanRS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Dematte12,
author = {Lorenzo Dematt{\'{e}}},
title = {Smoldyn on Graphics Processing Units: Massively Parallel Brownian
Dynamics Simulations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {655--667},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.106},
doi = {10.1109/TCBB.2011.106},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Dematte12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DoyonHC12,
author = {Jean{-}Philippe Doyon and
Sylvie Hamel and
C{\'{e}}dric Chauve},
title = {An Efficient Method for Exploring the Space of Gene Tree/Species Tree
Reconciliations in a Probabilistic Framework},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {26--39},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.64},
doi = {10.1109/TCBB.2011.64},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DoyonHC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DwightPW12,
author = {Zachary Dwight and
Robert Palais and
Carl T. Wittwer},
title = {uAnalyze: Web-Based High-Resolution {DNA} Melting Analysis with Comparison
to Thermodynamic Predictions},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1805--1811},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.112},
doi = {10.1109/TCBB.2012.112},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DwightPW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ElBakryAS12,
author = {Ola ElBakry and
M. Omair Ahmad and
M. N. S. Swamy},
title = {Identification of Differentially Expressed Genes for Time-Course Microarray
Data Based on Modified {RM} {ANOVA}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {451--466},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.65},
doi = {10.1109/TCBB.2011.65},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ElBakryAS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FagesS12,
author = {Fran{\c{c}}ois Fages and
Sylvain Soliman},
title = {Guest Editors' Introduction to the Special Section on Computational
Methods in Systems Biology},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1314--1315},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.97},
doi = {10.1109/TCBB.2012.97},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FagesS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Fagundes-LimaW12,
author = {Denise Fagundes{-}Lima and
Gerald Weber},
title = {Comment on "SCS: Signal, Context, and Structure Features for Genome-Wide
Human Promoter Recognition"},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {940--941},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.130},
doi = {10.1109/TCBB.2011.130},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Fagundes-LimaW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FelicioliM12,
author = {Claudio Felicioli and
Roberto Marangoni},
title = {BpMatch: An Efficient Algorithm for a Segmental Analysis of Genomic
Sequences},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1120--1127},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.30},
doi = {10.1109/TCBB.2012.30},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FelicioliM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FengYSM12,
author = {Zeny Z. Feng and
Xiaojian Yang and
Sanjeena Subedi and
Paul D. McNicholas},
title = {The {LASSO} and Sparse Least Squares Regression Methods for {SNP}
Selection in Predicting Quantitative Traits},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {629--636},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.139},
doi = {10.1109/TCBB.2011.139},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FengYSM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FrancescoLM12,
author = {Nicoletta De Francesco and
Giuseppe Lettieri and
Luca Martini},
title = {Efficient Genotype Elimination via Adaptive Allele Consolidation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1180--1189},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.46},
doi = {10.1109/TCBB.2012.46},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/FrancescoLM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GonzalezLW12,
author = {Alvaro J. Gonz{\'{a}}lez and
Li Liao and
Cathy H. Wu},
title = {Predicting Ligand Binding Residues and Functional Sites Using Multipositional
Correlations with Graph Theoretic Clustering and Kernel {CCA}},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {992--1001},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.136},
doi = {10.1109/TCBB.2011.136},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GonzalezLW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GrassiGM12,
author = {Elena Grassi and
Federico Di Gregorio and
Ivan Molineris},
title = {KungFQ: {A} Simple and Powerful Approach to Compress fastq Files},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1837--1842},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.123},
doi = {10.1109/TCBB.2012.123},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GrassiGM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GyorffyZS12,
author = {D{\'{a}}niel Gy{\"{o}}rffy and
P{\'{e}}ter Z{\'{a}}vodszky and
Andr{\'{a}}s Szil{\'{a}}gyi},
title = {"Pull Moves" for Rectangular Lattice Polymer Models Are Not Fully
Reversible},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1847--1849},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.129},
doi = {10.1109/TCBB.2012.129},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GyorffyZS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HanczarB12,
author = {Blaise Hanczar and
Avner Bar{-}Hen},
title = {A New Measure of Classifier Performance for Gene Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1379--1386},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.21},
doi = {10.1109/TCBB.2012.21},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HanczarB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HandokoOSKO12,
author = {Stephanus Daniel Handoko and
Xuchang Ouyang and
Chinh Tran To Su and
Chee Keong Kwoh and
Yew{-}Soon Ong},
title = {QuickVina: Accelerating AutoDock Vina Using Gradient-Based Heuristics
for Global Optimization},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1266--1272},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.82},
doi = {10.1109/TCBB.2012.82},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HandokoOSKO12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HandokoOSKO12a,
author = {Stephanus Daniel Handoko and
Xuchang Ouyang and
Chinh Tran To Su and
Chee Keong Kwoh and
Yew{-}Soon Ong},
title = {Erratum to "QuickVina: Accelerating AutoDock Vina Using Gradient-Based
Heuristics for Global Optimization"},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1853},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.156},
doi = {10.1109/TCBB.2012.156},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HandokoOSKO12a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HashemikhabirAKCK12,
author = {Seyedsasan Hashemikhabir and
Ey{\"{u}}p Serdar Ayaz and
Yusuf Kavurucu and
Tolga Can and
Tamer Kahveci},
title = {Large-Scale Signaling Network Reconstruction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1696--1708},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.128},
doi = {10.1109/TCBB.2012.128},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HashemikhabirAKCK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HawkinsZTP12,
author = {John C. Hawkins and
Hongbo Zhu and
Joan Teyra and
M. Teresa Pisabarro},
title = {Reduced False Positives in {PDZ} Binding Prediction Using Sequence
and Structural Descriptors},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1492--1503},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.54},
doi = {10.1109/TCBB.2012.54},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HawkinsZTP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Hennings-YeomansC12,
author = {Pablo H. Hennings{-}Yeomans and
Gregory F. Cooper},
title = {Improving the Prediction of Clinical Outcomes from Genomic Data Using
Multiresolution Analysis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1442--1450},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.80},
doi = {10.1109/TCBB.2012.80},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Hennings-YeomansC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HodgkinsonK12,
author = {Luqman Hodgkinson and
Richard M. Karp},
title = {Algorithms to Detect Multiprotein Modularity Conserved during Evolution},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1046--1058},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.125},
doi = {10.1109/TCBB.2011.125},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HodgkinsonK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HopfensitzMWMKNK12,
author = {Martin Hopfensitz and
Christoph M{\"{u}}ssel and
Christian Wawra and
Markus Maucher and
Michael K{\"{u}}hl and
Heiko Neumann and
Hans A. Kestler},
title = {Multiscale Binarization of Gene Expression Data for Reconstructing
Boolean Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {487--498},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.62},
doi = {10.1109/TCBB.2011.62},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HopfensitzMWMKNK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangF12,
author = {Hong Huang and
Hailiang Feng},
title = {Gene Classification Using Parameter-Free Semi-Supervised Manifold
Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {818--827},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.152},
doi = {10.1109/TCBB.2011.152},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuangF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangTLL12,
author = {Qinghua Huang and
Dacheng Tao and
Xuelong Li and
Alan Wee{-}Chung Liew},
title = {Parallelized Evolutionary Learning for Detection of Biclusters in
Gene Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {560--570},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.53},
doi = {10.1109/TCBB.2011.53},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuangTLL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/IrsoyYA12,
author = {Ozan Irsoy and
Olcay Taner Yildiz and
Ethem Alpaydin},
title = {Design and Analysis of Classifier Learning Experiments in Bioinformatics:
Survey and Case Studies},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1663--1675},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.117},
doi = {10.1109/TCBB.2012.117},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/IrsoyYA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JacklinDCC12,
author = {Neil Jacklin and
Zhi Ding and
Wei Chen and
Chunqi Chang},
title = {Noniterative Convex Optimization Methods for Network Component Analysis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1472--1481},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.81},
doi = {10.1109/TCBB.2012.81},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JacklinDCC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JangJH12,
author = {Woo{-}Hyuk Jang and
Suk Hoon Jung and
Dong{-}Soo Han},
title = {A Computational Model for Predicting Protein Interactions Based on
Multidomain Collaboration},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1081--1090},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.55},
doi = {10.1109/TCBB.2012.55},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JangJH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JarvisS12,
author = {Peter D. Jarvis and
Jeremy G. Sumner},
title = {Markov Invariants for Phylogenetic Rate Matrices Derived from Embedded
Submodels},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {828--836},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.24},
doi = {10.1109/TCBB.2012.24},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JarvisS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiangM12,
author = {Jonathan Q. Jiang and
Lisa J. McQuay},
title = {Predicting Protein Function by Multi-Label Correlated Semi-Supervised
Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1059--1069},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.156},
doi = {10.1109/TCBB.2011.156},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiangM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiangZSZ12,
author = {Haitao Jiang and
Chunfang Zheng and
David Sankoff and
Binhai Zhu},
title = {Scaffold Filling under the Breakpoint and Related Distances},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1220--1229},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.57},
doi = {10.1109/TCBB.2012.57},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiangZSZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JosephKNJI12,
author = {Shaini Joseph and
Shreyas Karnik and
Pravin Nilawe and
Vaidyanathan K. Jayaraman and
Susan Idicula{-}Thomas},
title = {ClassAMP: {A} Prediction Tool for Classification of Antimicrobial
Peptides},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1535--1538},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.89},
doi = {10.1109/TCBB.2012.89},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JosephKNJI12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KamathCDJS12,
author = {Uday Kamath and
Jack Compton and
Rezarta Islamaj Dogan and
Kenneth A. De Jong and
Amarda Shehu},
title = {An Evolutionary Algorithm Approach for Feature Generation from Sequence
Data and Its Application to {DNA} Splice Site Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1387--1398},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.53},
doi = {10.1109/TCBB.2012.53},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KamathCDJS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Karacali12,
author = {Bilge Kara{\c{c}}ali},
title = {Hierarchical Motif Vectors for Prediction of Functional Sites in Amino
Acid Sequences Using Quasi-Supervised Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1432--1441},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.68},
doi = {10.1109/TCBB.2012.68},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Karacali12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Karafyllidis12,
author = {Ioannis Karafyllidis},
title = {Quantum Gate Circuit Model of Signal Integration in Bacterial Quorum
Sensing},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {571--579},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.104},
doi = {10.1109/TCBB.2011.104},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Karafyllidis12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KawanoSNIYNYPM12,
author = {Shuichi Kawano and
Teppei Shimamura and
Atsushi Niida and
Seiya Imoto and
Rui Yamaguchi and
Masao Nagasaki and
Ryo Yoshida and
Cristin G. Print and
Satoru Miyano},
title = {Identifying Gene Pathways Associated with Cancer Characteristics via
Sparse Statistical Methods},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {966--972},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.48},
doi = {10.1109/TCBB.2012.48},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KawanoSNIYNYPM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KazmiHP12,
author = {Nabila Kazmi and
M. Alamgir Hossain and
Roger M. Phillips},
title = {A Hybrid Cellular Automaton Model of Solid Tumor Growth and Bioreductive
Drug Transport},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1595--1606},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.118},
doi = {10.1109/TCBB.2012.118},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KazmiHP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KelkSI12,
author = {Steven Kelk and
C{\'{e}}line Scornavacca and
Leo van Iersel},
title = {On the Elusiveness of Clusters},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {517--534},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.128},
doi = {10.1109/TCBB.2011.128},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KelkSI12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KentzoglanakisP12,
author = {Kyriakos Kentzoglanakis and
Matthew Poole},
title = {A Swarm Intelligence Framework for Reconstructing Gene Networks: Searching
for Biologically Plausible Architectures},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {358--371},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.87},
doi = {10.1109/TCBB.2011.87},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KentzoglanakisP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KimG12,
author = {Haseong Kim and
Erol Gelenbe},
title = {Stochastic Gene Expression Modeling with Hill Function for Switch-Like
Gene Responses},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {973--979},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.153},
doi = {10.1109/TCBB.2011.153},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KimG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KlarnerSB12,
author = {Hannes Klarner and
Heike Siebert and
Alexander Bockmayr},
title = {Time Series Dependent Analysis of Unparametrized Thomas Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1338--1351},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.61},
doi = {10.1109/TCBB.2012.61},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KlarnerSB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KountourisAPCHVC12,
author = {Petros Kountouris and
Michalis Agathocleous and
Vasilis J. Promponas and
Georgia Christodoulou and
Simos Hadjicostas and
Vassilis Vassiliades and
Chris Christodoulou},
title = {A Comparative Study on Filtering Protein Secondary Structure Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {731--739},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.22},
doi = {10.1109/TCBB.2012.22},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KountourisAPCHVC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KrejnikK12,
author = {Milos Krejnik and
Jir{\'{\i}} Kl{\'{e}}ma},
title = {Empirical Evidence of the Applicability of Functional Clustering through
Gene Expression Classification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {788--798},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.23},
doi = {10.1109/TCBB.2012.23},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KrejnikK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KulekciVX12,
author = {M. Oguzhan K{\"{u}}lekci and
Jeffrey Scott Vitter and
Bojian Xu},
title = {Efficient Maximal Repeat Finding Using the Burrows-Wheeler Transform
and Wavelet Tree},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {421--429},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.127},
doi = {10.1109/TCBB.2011.127},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KulekciVX12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KuruppuBCZ12,
author = {Shanika Kuruppu and
Bryan Beresford{-}Smith and
Thomas C. Conway and
Justin Zobel},
title = {Iterative Dictionary Construction for Compression of Large {DNA} Data
Sets},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {137--149},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.82},
doi = {10.1109/TCBB.2011.82},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KuruppuBCZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LazarTMSCMSDBN12,
author = {Cosmin Lazar and
Jonatan Taminau and
Stijn Meganck and
David Steenhoff and
Alain Coletta and
Colin Molter and
Virginie de Schaetzen and
Robin Duque and
Hugues Bersini and
Ann Now{\'{e}}},
title = {A Survey on Filter Techniques for Feature Selection in Gene Expression
Microarray Analysis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1106--1119},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.33},
doi = {10.1109/TCBB.2012.33},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LazarTMSCMSDBN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiBL12,
author = {Shuai Cheng Li and
Dongbo Bu and
Ming Li},
title = {Residues with Similar Hexagon Neighborhoods Share Similar Side-Chain
Conformations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {240--248},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.74},
doi = {10.1109/TCBB.2011.74},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiBL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiBL12a,
author = {Shuai Cheng Li and
Dongbo Bu and
Ming Li},
title = {Clustering 100, 000 Protein Structure Decoys in Minutes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {765--773},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.142},
doi = {10.1109/TCBB.2011.142},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiBL12a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiJKYZ12,
author = {Ying{-}Xin Li and
Shuiwang Ji and
Sudhir Kumar and
Jieping Ye and
Zhi{-}Hua Zhou},
title = {Drosophila Gene Expression Pattern Annotation through Multi-Instance
Multi-Label Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {98--112},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.73},
doi = {10.1109/TCBB.2011.73},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiJKYZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiaoLZC12,
author = {Bo Liao and
Xiong Li and
Wen Zhu and
Zhi Cao},
title = {A Novel Method to Select Informative SNPs and Their Application in
Genetic Association Studies},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1529--1534},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.70},
doi = {10.1109/TCBB.2012.70},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiaoLZC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LinRM12,
author = {Yu Lin and
Vaibhav Rajan and
Bernard M. E. Moret},
title = {A Metric for Phylogenetic Trees Based on Matching},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1014--1022},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.157},
doi = {10.1109/TCBB.2011.157},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LinRM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuWZ12,
author = {Li{-}Zhi Liu and
Fang{-}Xiang Wu and
Wen{-}Jun Zhang},
title = {Inference of Biological S-System Using the Separable Estimation Method
and the Genetic Algorithm},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {955--965},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.126},
doi = {10.1109/TCBB.2011.126},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuWZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MaGLXS12,
author = {Xin Ma and
Jing Guo and
Hongde Liu and
Jianming Xie and
Xiao Sun},
title = {Sequence-Based Prediction of DNA-Binding Residues in Proteins with
Conservation and Correlation Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1766--1775},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.106},
doi = {10.1109/TCBB.2012.106},
timestamp = {Thu, 31 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MaGLXS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MaRB12,
author = {Lingyu Ma and
Marco Reisert and
Hans Burkhardt},
title = {{RENNSH:} {A} Novel {\'{$\alpha$}}-Helix Identification Approach
for Intermediate Resolution Electron Density Maps},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {228--239},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.52},
doi = {10.1109/TCBB.2011.52},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MaRB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MaWLHSY12,
author = {Christopher Ma and
Thomas K. F. Wong and
Tak Wah Lam and
Wing{-}Kai Hon and
Kunihiko Sadakane and
Siu{-}Ming Yiu},
title = {An Efficient Alignment Algorithm for Searching Simple Pseudoknots
over Long Genomic Sequence},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1629--1638},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.104},
doi = {10.1109/TCBB.2012.104},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MaWLHSY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MaYCW12,
author = {Wenji Ma and
Yong Yang and
Zhi{-}Zhong Chen and
Lusheng Wang},
title = {Mutation Region Detection for Closely Related Individuals without
a Known Pedigree},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {499--510},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.134},
doi = {10.1109/TCBB.2011.134},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MaYCW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MahendraPZ12,
author = {Piraveenan Mahendra and
Mikhail Prokopenko and
Albert Y. Zomaya},
title = {Assortative Mixing in Directed Biological Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {66--78},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2010.80},
doi = {10.1109/TCBB.2010.80},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MahendraPZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MahoneyPF12,
author = {Arthur W. Mahoney and
Gregory J. Podgorski and
Nicholas S. Flann},
title = {Multiobjective Optimization Based-Approach for Discovering Novel Cancer
Therapies},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {169--184},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2010.39},
doi = {10.1109/TCBB.2010.39},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MahoneyPF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MargaliotT12,
author = {Michael Margaliot and
Tamir Tuller},
title = {Stability Analysis of the Ribosome Flow Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1545--1552},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.88},
doi = {10.1109/TCBB.2012.88},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MargaliotT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MargaliotT12a,
author = {Michael Margaliot and
Tamir Tuller},
title = {On the Steady-State Distribution in the Homogeneous Ribosome Flow
Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1724--1736},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.120},
doi = {10.1109/TCBB.2012.120},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MargaliotT12a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MarschallHKR12,
author = {Tobias Marschall and
Inke Herms and
Hans{-}Michael Kaltenbach and
Sven Rahmann},
title = {Probabilistic Arithmetic Automata and Their Applications},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1737--1750},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.109},
doi = {10.1109/TCBB.2012.109},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MarschallHKR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Mazza12,
author = {Tommaso Mazza},
title = {High Performance Computational Systems Biology},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {641--642},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.42},
doi = {10.1109/TCBB.2012.42},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Mazza12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MazzaBGP12,
author = {Tommaso Mazza and
Paolo Ballarini and
Rosita Guido and
Davide Prandi},
title = {The Relevance of Topology in Parallel Simulation of Biological Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {911--923},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.27},
doi = {10.1109/TCBB.2012.27},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/MazzaBGP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MimarogluA12,
author = {Selim Mimaroglu and
Emin Aksehirli},
title = {{DICLENS:} Divisive Clustering Ensemble with Automatic Cluster Number},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {408--420},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.129},
doi = {10.1109/TCBB.2011.129},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MimarogluA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MircevaCDD12,
author = {Georgina Mirceva and
Ivana Cingovska and
Zoran Dimov and
Danco Davcev},
title = {Efficient Approaches for Retrieving Protein Tertiary Structures},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1166--1179},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.138},
doi = {10.1109/TCBB.2011.138},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MircevaCDD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MooneyWSM12,
author = {Michael Mooney and
Beth Wilmot and
Shannon K. McWeeney},
title = {The {GA} and the {GWAS:} Using Genetic Algorithms to Search for Multilocus
Associations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {899--910},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.145},
doi = {10.1109/TCBB.2011.145},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MooneyWSM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NanniLGG12,
author = {Loris Nanni and
Alessandra Lumini and
Dinesh Gupta and
Aarti Garg},
title = {Identifying Bacterial Virulent Proteins by Fusing a Set of Classifiers
Based on Variants of Chou's Pseudo Amino Acid Composition and on Evolutionary
Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {467--475},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.117},
doi = {10.1109/TCBB.2011.117},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/NanniLGG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NoorSNN12,
author = {Amina Noor and
Erchin Serpedin and
Mohamed N. Nounou and
Hazem N. Nounou},
title = {Inferring Gene Regulatory Networks via Nonlinear State-Space Models
and Exploiting Sparsity},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1203--1211},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.32},
doi = {10.1109/TCBB.2012.32},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/NoorSNN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NorkusFMBLK12,
author = {Mindaugas Norkus and
Damien Fay and
Mary J. Murphy and
Frank Barry and
Gear{\'{o}}id {\'{O}} Laighin and
Liam Kilmartin},
title = {On the Application of Active Learning and Gaussian Processes in Postcryopreservation
Cell Membrane Integrity Experiments},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {846--856},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.155},
doi = {10.1109/TCBB.2011.155},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/NorkusFMBLK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NounouNMDD12,
author = {Mohamed N. Nounou and
Hazem N. Nounou and
Nader Meskin and
Aniruddha Datta and
Edward R. Dougherty},
title = {Multiscale Denoising of Biological Data: {A} Comparative Analysis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1539--1545},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.67},
doi = {10.1109/TCBB.2012.67},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/NounouNMDD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/NounouNMDD12a,
author = {Hazem N. Nounou and
Mohamed N. Nounou and
Nader Meskin and
Aniruddha Datta and
Edward R. Dougherty},
title = {Fuzzy Intervention in Biological Phenomena},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1819--1825},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.113},
doi = {10.1109/TCBB.2012.113},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcbb/NounouNMDD12a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/OmonyMGSB12,
author = {Jimmy Omony and
Astrid R. Mach{-}Aigner and
Leo H. de Graaff and
Gerrit van Straten and
Anton J. B. van Boxtel},
title = {Evaluation of Design Strategies for Time Course Experiments in Genetic
Networks: Case Study of the XlnR Regulon in Aspergillus niger},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1316--1325},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.59},
doi = {10.1109/TCBB.2012.59},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/OmonyMGSB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Ozyurt12,
author = {Ibrahim Burak {\"{O}}zyurt},
title = {Automatic Identification and Classification of Noun Argument Structures
in Biomedical Literature},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1639--1648},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.111},
doi = {10.1109/TCBB.2012.111},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Ozyurt12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PalB12,
author = {Ranadip Pal and
Sonal Bhattacharya},
title = {Transient Dynamics of Reduced-Order Models of Genetic Regulatory Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1230--1244},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.37},
doi = {10.1109/TCBB.2012.37},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PalB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PalaniappanA0GT12,
author = {Sucheendra K. Palaniappan and
S. Akshay and
Bing Liu and
Blaise Genest and
P. S. Thiagarajan},
title = {A Hybrid Factored Frontier Algorithm for Dynamic Bayesian Networks
with a Biopathways Application},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1352--1365},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.60},
doi = {10.1109/TCBB.2012.60},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PalaniappanA0GT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PangGHT12,
author = {Herbert Pang and
Stephen L. George and
Ken Hui and
Tiejun Tong},
title = {Gene Selection Using Iterative Feature Elimination Random Forests
for Survival Outcomes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1422--1431},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.63},
doi = {10.1109/TCBB.2012.63},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PangGHT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PaolettiKDR12,
author = {David R. Paoletti and
Dan E. Krane and
Travis E. Doom and
Michael L. Raymer},
title = {Inferring the Number of Contributors to Mixed {DNA} Profiles},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {113--122},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.76},
doi = {10.1109/TCBB.2011.76},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PaolettiKDR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PaolettiLMV12,
author = {Nicola Paoletti and
Pietro Li{\`{o}} and
Emanuela Merelli and
Marco Viceconti},
title = {Multilevel Computational Modeling and Quantitative Analysis of Bone
Remodeling},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1366--1378},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.51},
doi = {10.1109/TCBB.2012.51},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PaolettiLMV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PapadakisG12,
author = {George Papadakis and
Electra Gizeli},
title = {In Silico Search of {DNA} Drugs Targeting Oncogenes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1826--1830},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.127},
doi = {10.1109/TCBB.2012.127},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PapadakisG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PasseriniLF12,
author = {Andrea Passerini and
Marco Lippi and
Paolo Frasconi},
title = {Predicting Metal-Binding Sites from Protein Sequence},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {203--213},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.94},
doi = {10.1109/TCBB.2011.94},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PasseriniLF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PhippsB12,
author = {Paul Phipps and
Sergey Bereg},
title = {Optimizing Phylogenetic Networks for Circular Split Systems},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {535--547},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.109},
doi = {10.1109/TCBB.2011.109},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PhippsB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PirolaBJ12,
author = {Yuri Pirola and
Paola Bonizzoni and
Tao Jiang},
title = {An Efficient Algorithm for Haplotype Inference on Pedigrees with Recombinations
and Mutations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {12--25},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.51},
doi = {10.1109/TCBB.2011.51},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PirolaBJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PirolaVBSB12,
author = {Yuri Pirola and
Gianluca Della Vedova and
Stefano Biffani and
Alessandra Stella and
Paola Bonizzoni},
title = {A Fast and Practical Approach to Genotype Phasing and Imputation on
a Pedigree with Erroneous and Incomplete Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1582--1594},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.100},
doi = {10.1109/TCBB.2012.100},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PirolaVBSB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PizzutiR12,
author = {Clara Pizzuti and
Simona E. Rombo},
title = {A Coclustering Approach for Mining Large Protein-Protein Interaction
Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {717--730},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.158},
doi = {10.1109/TCBB.2011.158},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PizzutiR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Poleksic12,
author = {Aleksandar Poleksic},
title = {On Complexity of Protein Structure Alignment Problem under Distance
Constraint},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {511--516},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.133},
doi = {10.1109/TCBB.2011.133},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Poleksic12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QianD12,
author = {Xiaoning Qian and
Edward R. Dougherty},
title = {Intervention in Gene Regulatory Networks via Phenotypically Constrained
Control Policies Based on Long-Run Behavior},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {123--136},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.107},
doi = {10.1109/TCBB.2011.107},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QianD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/QuevedoBPL12,
author = {Jos{\'{e}} Ram{\'{o}}n Quevedo and
Antonio Bahamonde and
Miguel P{\'{e}}rez{-}Enciso and
Oscar Luaces},
title = {Disease Liability Prediction from Large Scale Genotyping Data Using
Classifiers with a Reject Option},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {88--97},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.44},
doi = {10.1109/TCBB.2011.44},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/QuevedoBPL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ReMV12,
author = {Matteo Re and
Marco Mesiti and
Giorgio Valentini},
title = {A Fast Ranking Algorithm for Predicting Gene Functions in Biomolecular
Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1812--1818},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.114},
doi = {10.1109/TCBB.2012.114},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ReMV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RottgerRTB12,
author = {Richard R{\"{o}}ttger and
Ulrich R{\"{u}}ckert and
Jan Taubert and
Jan Baumbach},
title = {How Little Do We Actually Know? On the Size of Gene Regulatory Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1293--1300},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.71},
doi = {10.1109/TCBB.2012.71},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RottgerRTB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Sagot12,
author = {Marie{-}France Sagot},
title = {{EIC} Editorial},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1553--1557},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.155},
doi = {10.1109/TCBB.2012.155},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Sagot12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SamboOCTS12,
author = {Francesco Sambo and
Marco Antonio Montes de Oca and
Barbara Di Camillo and
Gianna Toffolo and
Thomas St{\"{u}}tzle},
title = {{MORE:} Mixed Optimization for Reverse Engineering - An Application
to Modeling Biological Networks Response via Sparse Systems of Nonlinear
Differential Equations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1459--1471},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.56},
doi = {10.1109/TCBB.2012.56},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SamboOCTS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SargsyanSDN12,
author = {Khachik Sargsyan and
Cosmin Safta and
Bert J. Debusschere and
Habib N. Najm},
title = {Multiparameter Spectral Representation of Noise-Induced Competence
in Bacillus Subtilis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1709--1723},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.107},
doi = {10.1109/TCBB.2012.107},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SargsyanSDN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SenguptaB12,
author = {Soumi Sengupta and
Sanghamitra Bandyopadhyay},
title = {De Novo Design of Potential RecA Inhibitors Using MultiObjective Optimization},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1139--1154},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.35},
doi = {10.1109/TCBB.2012.35},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SenguptaB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SenguptaMB12,
author = {Debarka Sengupta and
Ujjwal Maulik and
Sanghamitra Bandyopadhyay},
title = {Weighted Markov Chain Based Aggregation of Biomolecule Orderings},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {924--933},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.28},
doi = {10.1109/TCBB.2012.28},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SenguptaMB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SerangN12,
author = {Oliver Serang and
William Stafford Noble},
title = {Faster Mass Spectrometry-Based Protein Inference: Junction Trees Are
More Efficient than Sampling and Marginalization by Enumeration},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {809--817},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.26},
doi = {10.1109/TCBB.2012.26},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SerangN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SharmaIM12,
author = {Alok Sharma and
Seiya Imoto and
Satoru Miyano},
title = {A Top-r Feature Selection Algorithm for Microarray Gene Expression
Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {754--764},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.151},
doi = {10.1109/TCBB.2011.151},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SharmaIM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SpillnerNM12,
author = {Andreas Spillner and
Binh T. Nguyen and
Vincent Moulton},
title = {Constructing and Drawing Regular Planar Split Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {395--407},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.115},
doi = {10.1109/TCBB.2011.115},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SpillnerNM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/StegmayerMKLC12,
author = {Georgina Stegmayer and
Diego H. Milone and
Laura Kamenetzky and
Mariana G. Lopez and
Fernando Carrari},
title = {A Biologically Inspired Validity Measure for Comparison of Clustering
Methods over Metabolic Data Sets},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {706--716},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.10},
doi = {10.1109/TCBB.2012.10},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/StegmayerMKLC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SteinbissK12,
author = {Sascha Steinbiss and
Stefan Kurtz},
title = {A New Efficient Data Structure for Storage and Retrieval of Multiple
Biosequences},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {345--357},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.146},
doi = {10.1109/TCBB.2011.146},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SteinbissK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SuWHWKWT12,
author = {Chien{-}Hao Su and
Tse{-}Yi Wang and
Ming{-}Tsung Hsu and
Francis Cheng{-}Hsuan Weng and
Cheng{-}Yan Kao and
Daryi Wang and
Huai{-}Kuang Tsai},
title = {The Impact of Normalization and Phylogenetic Information on Estimating
the Distance for Metagenomes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {619--628},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.111},
doi = {10.1109/TCBB.2011.111},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SuWHWKWT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SunBY12,
author = {Yanni Sun and
Jeremy Buhler and
Cheng Yuan},
title = {Designing Filters for Fast-Known NcRNA Identification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {774--787},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.149},
doi = {10.1109/TCBB.2011.149},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SunBY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SunGH12,
author = {Jianyong Sun and
Jonathan M. Garibaldi and
Charlie Hodgman},
title = {Parameter Estimation Using Metaheuristics in Systems Biology: {A}
Comprehensive Review},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {185--202},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.63},
doi = {10.1109/TCBB.2011.63},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SunGH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SunGK12,
author = {Jianyong Sun and
Jonathan M. Garibaldi and
Kim Kenobi},
title = {Robust Bayesian Clustering for Replicated Gene Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1504--1514},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.85},
doi = {10.1109/TCBB.2012.85},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SunGK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SunSFW12,
author = {Hong Sun and
Ahmet Sacan and
Hakan Ferhatosmanoglu and
Yusu Wang},
title = {Smolign: {A} Spatial Motifs-Based Protein Multiple Structural Alignment
Method},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {249--261},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.67},
doi = {10.1109/TCBB.2011.67},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SunSFW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SwensonCPS12,
author = {Krister M. Swenson and
Eric C. H. Chen and
Nicholas D. Pattengale and
David Sankoff},
title = {The Kernel of Maximum Agreement Subtrees},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1023--1031},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.11},
doi = {10.1109/TCBB.2012.11},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SwensonCPS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TangWGSK12,
author = {Yang Tang and
Zidong Wang and
Huijun Gao and
Stephen Swift and
J{\"{u}}rgen Kurths},
title = {A Constrained Evolutionary Computation Method for Detecting Controlling
Regions of Cortical Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1569--1581},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.124},
doi = {10.1109/TCBB.2012.124},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TangWGSK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/TorresEDHMTD12,
author = {Jos{\'{e}} Salavert Torres and
Ignacio Blanquer Espert and
Andr{\'{e}}s Tom{\'{a}}s Dominguez and
Vicente Hern{\'{a}}ndez and
Ignacio Medina and
Joaqu{\'{\i}}n T{\'{a}}rraga and
Joaqu{\'{\i}}n Dopazo},
title = {Using GPUs for the Exact Alignment of Short-Read Genetic Sequences
by Means of the Burrows-Wheeler Transform},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1245--1256},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.49},
doi = {10.1109/TCBB.2012.49},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/TorresEDHMTD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Tsai12,
author = {Richard Tzong{-}Han Tsai},
title = {Improving Protein-Protein Interaction Pair Ranking with an Integrated
Global Association Score},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1690--1695},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.99},
doi = {10.1109/TCBB.2012.99},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Tsai12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/VasicRK12,
author = {Bane Vasic and
Vida Ravanmehr and
Anantha Raman Krishnan},
title = {An Information Theoretic Approach to Constructing Robust Boolean Gene
Regulatory Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {52--65},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.61},
doi = {10.1109/TCBB.2011.61},
timestamp = {Mon, 17 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/VasicRK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WanS12,
author = {Lin Wan and
Fengzhu Sun},
title = {{CEDER:} Accurate Detection of Differentially Expressed Genes by Combining
Significance of Exons Using RNA-Seq},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1281--1292},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.83},
doi = {10.1109/TCBB.2012.83},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WanS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Wang12,
author = {Biing{-}Feng Wang},
title = {Output-Sensitive Algorithms for Finding the Nested Common Intervals
of Two General Sequences},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {548--559},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.112},
doi = {10.1109/TCBB.2011.112},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Wang12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangBPKND12,
author = {Chong Wang and
Peter Beyerlein and
Heike Pospisil and
Antje Krause and
Chris D. Nugent and
Werner Dubitzky},
title = {An Efficient Method for Modeling Kinetic Behavior of Channel Proteins
in Cardiomyocytes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {40--51},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.84},
doi = {10.1109/TCBB.2011.84},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangBPKND12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangHWP12,
author = {Jianxin Wang and
Yuannan Huang and
Fang{-}Xiang Wu and
Yi Pan},
title = {Symmetry Compression Method for Discovering Network Motifs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1776--1789},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.119},
doi = {10.1109/TCBB.2012.119},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangHWP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangKLL12,
author = {Biing{-}Feng Wang and
Chung{-}Chin Kuo and
Shang{-}Ju Liu and
Chien{-}Hsin Lin},
title = {A New Efficient Algorithm for the Gene-Team Problem on General Sequences},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {330--344},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.96},
doi = {10.1109/TCBB.2011.96},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangKLL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangLWP12,
author = {Jianxin Wang and
Min Li and
Huan Wang and
Yi Pan},
title = {Identification of Essential Proteins Based on Edge Clustering Coefficient},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1070--1080},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.147},
doi = {10.1109/TCBB.2011.147},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangLWP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangMWA12,
author = {Daifeng Wang and
Mia K. Markey and
Claus O. Wilke and
Ari Arapostathis},
title = {Eigen-Genomic System Dynamic-Pattern Analysis {(ESDA):} Modeling mRNA
Degradation and Self-Regulation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {430--437},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.150},
doi = {10.1109/TCBB.2011.150},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangMWA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangZJH12,
author = {Shu{-}Ling Wang and
Yi{-}Hai Zhu and
Wei Jia and
De{-}Shuang Huang},
title = {Robust Classification Method of Tumor Subtype by Using Correlation
Filters},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {580--591},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.135},
doi = {10.1109/TCBB.2011.135},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangZJH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Willson12,
author = {Stephen J. Willson},
title = {{CSD} Homomorphisms between Phylogenetic Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1128--1138},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.52},
doi = {10.1109/TCBB.2012.52},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/Willson12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WongCLY12,
author = {Thomas K. F. Wong and
Y. S. Chiu and
Tak Wah Lam and
Siu{-}Ming Yiu},
title = {Memory Efficient Algorithms for Structural Alignment of RNAs with
Pseudoknots},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {161--168},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.66},
doi = {10.1109/TCBB.2011.66},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WongCLY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WuDSYZ12,
author = {Meng{-}Yun Wu and
Dao{-}Qing Dai and
Yu Shi and
Hong Yan and
Xiao{-}Fei Zhang},
title = {Biomarker Identification and Cancer Classification Based on Microarray
Data Using Laplace Naive Bayes Model with Mean Shrinkage},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1649--1662},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.105},
doi = {10.1109/TCBB.2012.105},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WuDSYZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XiangPH12,
author = {Yang Xiang and
Philip R. O. Payne and
Kun Huang},
title = {Transactional Database Transformation and Its Application in Prioritizing
Human Disease Genes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {294--304},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.58},
doi = {10.1109/TCBB.2011.58},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XiangPH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XuTL12,
author = {Yun Xu and
Da Teng and
YiMing Lei},
title = {MinePhos: {A} Literature Mining System for Protein Phoshphorylation
Information Extraction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {311--315},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.85},
doi = {10.1109/TCBB.2011.85},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XuTL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangCYC12,
author = {Cheng{-}Hong Yang and
Yu{-}Huei Cheng and
Cheng{-}Huei Yang and
Li{-}Yeh Chuang},
title = {Mutagenic Primer Design for Mismatch {PCR-RFLP} {SNP} Genotyping Using
a Genetic Algorithm},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {837--845},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.25},
doi = {10.1109/TCBB.2012.25},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangCYC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangHYY12,
author = {Chao Yang and
Zengyou He and
Can Yang and
Weichuan Yu},
title = {Peptide Reranking with Protein-Peptide Correspondence and Precursor
Peak Intensity Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1212--1219},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.29},
doi = {10.1109/TCBB.2012.29},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangHYY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YangMWZZY12,
author = {Pengyi Yang and
Jie Ma and
Penghao Wang and
Yunping Zhu and
Bing Bing Zhou and
Jean Yee Hwa Yang},
title = {Improving X!Tandem on Peptide Identification from Mass Spectrometry
by Self-Boosted Percolator},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {5},
pages = {1273--1280},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.86},
doi = {10.1109/TCBB.2012.86},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YangMWZZY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YoonL12,
author = {Yongwook Yoon and
Gary Geunbae Lee},
title = {Subcellular Localization Prediction through Boosting Association Rules},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {609--618},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.131},
doi = {10.1109/TCBB.2011.131},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YoonL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuHB12,
author = {Lei Yu and
Yue Han and
Michael E. Berens},
title = {Stable Gene Selection from Microarray Data via Sample Weighting},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {1},
pages = {262--272},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.47},
doi = {10.1109/TCBB.2011.47},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuHB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuLYWH12,
author = {Zhiwen Yu and
Le Li and
Jane You and
Hau{-}San Wong and
Guoqiang Han},
title = {SC{\({^3}\)}: Triple Spectral Clustering-Based Consensus Clustering
Framework for Class Discovery from Cancer Gene Expression Profiles},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {6},
pages = {1751--1765},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.108},
doi = {10.1109/TCBB.2012.108},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuLYWH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuanCCM12,
author = {Yinyin Yuan and
Christina Curtis and
Carlos Caldas and
Florian Markowetz},
title = {A Sparse Regulatory Network of Copy-Number Driven Gene Expression
Reveals Putative Breast Cancer Oncogenes},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {947--954},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.105},
doi = {10.1109/TCBB.2011.105},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuanCCM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZengWLDL12,
author = {Nianyin Zeng and
Zidong Wang and
Yurong Li and
Min Du and
Xiaohui Liu},
title = {A Hybrid {EKF} and Switching {PSO} Algorithm for Joint State and Parameter
Estimation of Lateral Flow Immunoassay Models},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {321--329},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.140},
doi = {10.1109/TCBB.2011.140},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZengWLDL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangD12,
author = {Xiao{-}Fei Zhang and
Dao{-}Qing Dai},
title = {A Framework for Incorporating Functional Interrelationships into Protein
Function Prediction Algorithms},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {740--753},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.148},
doi = {10.1109/TCBB.2011.148},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangDL12,
author = {Xiao{-}Fei Zhang and
Dao{-}Qing Dai and
Xiao{-}Xin Li},
title = {Protein Complexes Discovery Based on Protein-Protein Interaction Data
via a Regularized Sparse Generative Network Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {857--870},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.20},
doi = {10.1109/TCBB.2012.20},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangDL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangLH12,
author = {Yong Zhang and
Peng Li and
Garng M. Huang},
title = {Quantifying Dynamic Stability of Genetic Memory Circuits},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {871--884},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.132},
doi = {10.1109/TCBB.2011.132},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangLH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangLYWL12,
author = {Yijia Zhang and
Hongfei Lin and
Zhihao Yang and
Jian Wang and
Yanpeng Li},
title = {Hash Subgraph Pairwise Kernel for Protein-Protein Interaction Extraction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1190--1202},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.50},
doi = {10.1109/TCBB.2012.50},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangLYWL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangM12,
author = {Xiuwei Zhang and
Bernard M. E. Moret},
title = {Refining Regulatory Networks through Phylogenetic Transfer of Information},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1032--1045},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.62},
doi = {10.1109/TCBB.2012.62},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangWSX12,
author = {Shaohong Zhang and
Hau{-}San Wong and
Ying Shen and
Dongqing Xie},
title = {A New Unsupervised Feature Ranking Method for Gene Expression Data
Based on Consensus Affinity},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1257--1263},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.34},
doi = {10.1109/TCBB.2012.34},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangWSX12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZoppisGBCMGFGSBMAM12,
author = {Italo Zoppis and
Erica Gianazza and
Massimiliano Borsani and
Clizia Chinello and
Veronica Mainini and
Carmen Galbusera and
Carlo Ferrarese and
Gloria Galimberti and
Alessandro Sorbi and
Barbara Borroni and
Fulvio Magni and
Marco Antoniotti and
Giancarlo Mauri},
title = {Mutual Information Optimization for Mass Spectra Data Alignment},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {934--939},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.80},
doi = {10.1109/TCBB.2011.80},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZoppisGBCMGFGSBMAM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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