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@article{DBLP:journals/jcb/AgapieAG14, author = {Alexandru Agapie and Anca Andreica and Marius Giuclea}, title = {Probabilistic Cellular Automata}, journal = {J. Comput. Biol.}, volume = {21}, number = {9}, pages = {699--708}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0074}, doi = {10.1089/CMB.2014.0074}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/AgapieAG14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/AlexeevZ14, author = {Nikita Alexeev and Peter Zograf}, title = {Random Matrix Approach to the Distribution of Genomic Distance}, journal = {J. Comput. Biol.}, volume = {21}, number = {8}, pages = {622--631}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0066}, doi = {10.1089/CMB.2013.0066}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/AlexeevZ14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BadrH14, author = {Eman Badr and Lenwood S. Heath}, title = {Identifying Splicing Regulatory Elements with de Bruijn Graphs}, journal = {J. Comput. Biol.}, volume = {21}, number = {12}, pages = {880--897}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0183}, doi = {10.1089/CMB.2014.0183}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/BadrH14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BartolucciP14, author = {Francesco Bartolucci and Silvia Pandolfi}, title = {A New Constant Memory Recursion for Hidden Markov Models}, journal = {J. Comput. Biol.}, volume = {21}, number = {2}, pages = {99--117}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0096}, doi = {10.1089/CMB.2013.0096}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/BartolucciP14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BerettaBVPR14, author = {Stefano Beretta and Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Raffaella Rizzi}, title = {Modeling Alternative Splicing Variants from RNA-Seq Data with Isoform Graphs}, journal = {J. Comput. Biol.}, volume = {21}, number = {1}, pages = {16--40}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0112}, doi = {10.1089/CMB.2013.0112}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/BerettaBVPR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BurdenLF14, author = {Conrad J. Burden and Paul C. Leopardi and Sylvain For{\^{e}}t}, title = {The Distribution of Word Matches Between Markovian Sequences with Periodic Boundary Conditions}, journal = {J. Comput. Biol.}, volume = {21}, number = {1}, pages = {41--63}, year = {2014}, url = {https://doi.org/10.1089/cmb.2012.0277}, doi = {10.1089/CMB.2012.0277}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/BurdenLF14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/CalifanoKS14, author = {Andrea Califano and Manolis Kellis and Gustavo Stolovitzky}, title = {{RECOMB/ISCB} Systems Biology, Regulatory Genomics, and {DREAM} 2013 Special Issue}, journal = {J. Comput. Biol.}, volume = {21}, number = {5}, pages = {371--372}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.009p}, doi = {10.1089/CMB.2014.009P}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/CalifanoKS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/CarmelMTZ14, author = {Amir Carmel and Noa Musa{-}Lempel and Dekel Tsur and Michal Ziv{-}Ukelson}, title = {The Worst Case Complexity of Maximum Parsimony}, journal = {J. Comput. Biol.}, volume = {21}, number = {11}, pages = {799--808}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0128}, doi = {10.1089/CMB.2014.0128}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/CarmelMTZ14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/ChenGSW14, author = {William Y. C. Chen and Qiang{-}Hui Guo and Lisa Hui Sun and Jian Wang}, title = {Zigzag Stacks and \emph{m}-Regular Linear Stacks}, journal = {J. Comput. Biol.}, volume = {21}, number = {12}, pages = {915--935}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0133}, doi = {10.1089/CMB.2014.0133}, timestamp = {Wed, 01 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/ChenGSW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/ClearyBGHIIJLNRWTV14, author = {John G. Cleary and Ross Braithwaite and Kurt Gaastra and Brian S. Hilbush and Stuart Inglis and Sean A. Irvine and Alan Jackson and Richard Littin and Sahar Nohzadeh{-}Malakshah and Mehul Rathod and David Ware and Len Trigg and Francisco M. de la Vega}, title = {Joint Variant and \emph{De Novo} Mutation Identification on Pedigrees from High-Throughput Sequencing Data}, journal = {J. Comput. Biol.}, volume = {21}, number = {6}, pages = {405--419}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0029}, doi = {10.1089/CMB.2014.0029}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/ClearyBGHIIJLNRWTV14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/CominF14, author = {Matteo Comin and Montse Farreras}, title = {Parallel Continuous Flow: {A} Parallel Suffix Tree Construction Tool for Whole Genomes}, journal = {J. Comput. Biol.}, volume = {21}, number = {4}, pages = {330--344}, year = {2014}, url = {https://doi.org/10.1089/cmb.2012.0256}, doi = {10.1089/CMB.2012.0256}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/CominF14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/DhifliSN14, author = {Wajdi Dhifli and Rabie Saidi and Engelbert Mephu Nguifo}, title = {Smoothing 3D Protein Structure Motifs Through Graph Mining and Amino Acid Similarities}, journal = {J. Comput. Biol.}, volume = {21}, number = {2}, pages = {162--172}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0092}, doi = {10.1089/CMB.2013.0092}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/DhifliSN14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/DingLDSC14, author = {Yang Ding and William Andrew Lorenz and Iv{\'{a}}n Dot{\'{u}} and Evan Senter and Peter Clote}, title = {Computing the Probability of {RNA} Hairpin and Multiloop Formation}, journal = {J. Comput. Biol.}, volume = {21}, number = {3}, pages = {201--218}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0148}, doi = {10.1089/CMB.2013.0148}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/DingLDSC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/FerraroSFNG14, author = {Maria Brigida Ferraro and Marco Savarese and Giuseppina Di Fruscio and Vincenzo Nigro and Mario Rosario Guarracino}, title = {Prediction of Rare Single-Nucleotide Causative Mutations for Muscular Diseases in Pooled Next-Generation Sequencing Experiments}, journal = {J. Comput. Biol.}, volume = {21}, number = {9}, pages = {665--675}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0037}, doi = {10.1089/CMB.2014.0037}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/FerraroSFNG14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/FuR14, author = {Benjamin M. M. Fu and Christian M. Reidys}, title = {Shapes of Interacting {RNA} Complexes}, journal = {J. Comput. Biol.}, volume = {21}, number = {9}, pages = {649--664}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0107}, doi = {10.1089/CMB.2014.0107}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/FuR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/GalasSSI14, author = {David J. Galas and Nikita A. Sakhanenko and Alexander Skupin and Tomasz M. Ignac}, title = {Describing the Complexity of Systems: Multivariable "Set Complexity" and the Information Basis of Systems Biology}, journal = {J. Comput. Biol.}, volume = {21}, number = {2}, pages = {118--140}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0039}, doi = {10.1089/CMB.2013.0039}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/GalasSSI14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/GamermannMCUC14, author = {Daniel Gamermann and Arnau Montagud and J. Alberto Conejero and Javier F. Urchuegu{\'{\i}}a and Pedro Fern{\'{a}}ndez de C{\'{o}}rdoba}, title = {New Approach for Phylogenetic Tree Recovery Based on Genome-Scale Metabolic Networks}, journal = {J. Comput. Biol.}, volume = {21}, number = {7}, pages = {508--519}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0150}, doi = {10.1089/CMB.2013.0150}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/GamermannMCUC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/GillSA14, author = {Nivit Gill and Shailendra Singh and Trilok Chand Aseri}, title = {Computational Disease Gene Prioritization: An Appraisal}, journal = {J. Comput. Biol.}, volume = {21}, number = {6}, pages = {456--465}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0158}, doi = {10.1089/CMB.2013.0158}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/GillSA14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/GoreckiE14, author = {Pawel G{\'{o}}recki and Oliver Eulenstein}, title = {DrML: Probabilistic Modeling of Gene Duplications}, journal = {J. Comput. Biol.}, volume = {21}, number = {1}, pages = {89--98}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0078}, doi = {10.1089/CMB.2013.0078}, timestamp = {Fri, 17 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/GoreckiE14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/HanLR14, author = {Hillary S. W. Han and Thomas J. X. Li and Christian M. Reidys}, title = {Combinatorics of \emph{{\(\gamma\)}}-Structures}, journal = {J. Comput. Biol.}, volume = {21}, number = {8}, pages = {591--608}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0128}, doi = {10.1089/CMB.2013.0128}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/HanLR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/HaqueSH14, author = {Md. Muksitul Haque and Michael K. Skinner and Lawrence B. Holder}, title = {Imbalanced Class Learning in Epigenetics}, journal = {J. Comput. Biol.}, volume = {21}, number = {7}, pages = {492--507}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0008}, doi = {10.1089/CMB.2014.0008}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/HaqueSH14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/HasegawaMYIMA14, author = {Takanori Hasegawa and Tomoya Mori and Rui Yamaguchi and Seiya Imoto and Satoru Miyano and Tatsuya Akutsu}, title = {An Efficient Data Assimilation Schema for Restoration and Extension of Gene Regulatory Networks Using Time-Course Observation Data}, journal = {J. Comput. Biol.}, volume = {21}, number = {11}, pages = {785--798}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0171}, doi = {10.1089/CMB.2014.0171}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/HasegawaMYIMA14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/HochbergM14, author = {Robert Hochberg and Treena Larrew Milam}, title = {Data Structures for Parsimony Correlation and Biosequence Co-Evolution}, journal = {J. Comput. Biol.}, volume = {21}, number = {4}, pages = {361--369}, year = {2014}, url = {https://doi.org/10.1089/cmb.2008.0107}, doi = {10.1089/CMB.2008.0107}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/HochbergM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/HsiehS14, author = {Mu{-}Fen Hsieh and Sing{-}Hoi Sze}, title = {Finding Alignments of Conserved Graphlets in Protein Interaction Networks}, journal = {J. Comput. Biol.}, volume = {21}, number = {3}, pages = {234--246}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0130}, doi = {10.1089/CMB.2013.0130}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/HsiehS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/HuH14, author = {Wei Hu and John Hu}, title = {Prediction of siRNA Potency Using Sparse Logistic Regression}, journal = {J. Comput. Biol.}, volume = {21}, number = {6}, pages = {420--427}, year = {2014}, url = {https://doi.org/10.1089/cmb.2009.0115}, doi = {10.1089/CMB.2009.0115}, timestamp = {Sun, 06 Oct 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/HuH14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/HuoJ14, author = {Yunzhang Huo and Ping Ji}, title = {Continuous-Time Markov Chain-Based Flux Analysis in Metabolism}, journal = {J. Comput. Biol.}, volume = {21}, number = {9}, pages = {691--698}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0073}, doi = {10.1089/CMB.2014.0073}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/HuoJ14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/IllnerFT14, author = {Katrin Illner and Christiane Fuchs and Fabian J. Theis}, title = {Bayesian Blind Source Separation for Data with Network Structure}, journal = {J. Comput. Biol.}, volume = {21}, number = {11}, pages = {855--865}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0117}, doi = {10.1089/CMB.2014.0117}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/IllnerFT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/IrvahnM14, author = {Jan Irvahn and Vladimir N. Minin}, title = {Phylogenetic Stochastic Mapping Without Matrix Exponentiation}, journal = {J. Comput. Biol.}, volume = {21}, number = {9}, pages = {676--690}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0062}, doi = {10.1089/CMB.2014.0062}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/IrvahnM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/KakourouVM14, author = {Alexia Kakourou and Werner Vach and Bart J. A. Mertens}, title = {Combination Approaches Improve Predictive Performance of Diagnostic Rules for Mass-Spectrometry Proteomic Data}, journal = {J. Comput. Biol.}, volume = {21}, number = {12}, pages = {898--914}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0125}, doi = {10.1089/CMB.2014.0125}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/KakourouVM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/KannanW14, author = {Lavanya Kannan and Ward C. Wheeler}, title = {Exactly Computing the Parsimony Scores on Phylogenetic Networks Using Dynamic Programming}, journal = {J. Comput. Biol.}, volume = {21}, number = {4}, pages = {303--319}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0134}, doi = {10.1089/CMB.2013.0134}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/KannanW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/Khan14, author = {Abdul Arif Khan}, title = {\emph{In Silico} Prediction of \emph{Escherichia coli} Proteins Targeting the Host Cell Nucleus, with Special Reference to Their Role in Colon Cancer Etiology}, journal = {J. Comput. Biol.}, volume = {21}, number = {6}, pages = {466--475}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0001}, doi = {10.1089/CMB.2014.0001}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/Khan14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/KimX14, author = {Seyoung Kim and Eric P. Xing}, title = {Exploiting Genome Structure in Association Analysis}, journal = {J. Comput. Biol.}, volume = {21}, number = {4}, pages = {345--360}, year = {2014}, url = {https://doi.org/10.1089/cmb.2009.0224}, doi = {10.1089/CMB.2009.0224}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/KimX14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/KlieNS14, author = {Sebastian Klie and Zoran Nikoloski and Joachim Selbig}, title = {Biological Cluster Evaluation for Gene Function Prediction}, journal = {J. Comput. Biol.}, volume = {21}, number = {6}, pages = {428--445}, year = {2014}, url = {https://doi.org/10.1089/cmb.2009.0129}, doi = {10.1089/CMB.2009.0129}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/KlieNS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/KonopkaGK14, author = {Bogumil Konopka and Tomasz Golda and Malgorzata Kotulska}, title = {Evaluating the Significance of Protein Functional Similarity Based on Gene Ontology}, journal = {J. Comput. Biol.}, volume = {21}, number = {11}, pages = {809--822}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0181}, doi = {10.1089/CMB.2014.0181}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/KonopkaGK14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/Kovac14, author = {Jakub Kov{\'{a}}c}, title = {On the Complexity of Rearrangement Problems under the Breakpoint Distance}, journal = {J. Comput. Biol.}, volume = {21}, number = {1}, pages = {1--15}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0004}, doi = {10.1089/CMB.2013.0004}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/Kovac14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/KundetiRD14, author = {Vamsi Kundeti and Sanguthevar Rajasekaran and Hieu Dinh}, title = {Border Length Minimization Problem on a Square Array}, journal = {J. Comput. Biol.}, volume = {21}, number = {6}, pages = {446--455}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0127}, doi = {10.1089/CMB.2013.0127}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/KundetiRD14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/LeePFT14, author = {Heewook Lee and Ellen Popodi and Patricia L. Foster and Haixu Tang}, title = {Detection of Structural Variants Involving Repetitive Regions in the Reference Genome}, journal = {J. Comput. Biol.}, volume = {21}, number = {3}, pages = {219--233}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0129}, doi = {10.1089/CMB.2013.0129}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/LeePFT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/LevtovAFKV14, author = {Nissan Levtov and Sandeep Amberkar and Zakharia M. Frenkel and Lars Kaderali and Zeev Volkovich}, title = {Detecting Non-Uniform Clusters in Large-Scale Interaction Graphs}, journal = {J. Comput. Biol.}, volume = {21}, number = {2}, pages = {173--183}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0095}, doi = {10.1089/CMB.2013.0095}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/LevtovAFKV14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/LiWCHS14, author = {Chuanxi Li and Rujing Wang and Peng Chen and He Huang and Yaru Su}, title = {Interaction Relation Ontology Learning}, journal = {J. Comput. Biol.}, volume = {21}, number = {1}, pages = {80--88}, year = {2014}, url = {https://doi.org/10.1089/cmb.2012.0009}, doi = {10.1089/CMB.2012.0009}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/LiWCHS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/LiuDWSL14, author = {Lizhen Liu and Xuemin Dai and Hanshi Wang and Wei Song and Jingli Lu}, title = {A Weighted Multipath Measurement Based on Gene Ontology for Estimating Gene Products Similarity}, journal = {J. Comput. Biol.}, volume = {21}, number = {12}, pages = {964--974}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0143}, doi = {10.1089/CMB.2014.0143}, timestamp = {Thu, 01 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/LiuDWSL14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/MaghawryMG14, author = {Huda Amin Maghawry and Mostafa G. M. Mostafa and Tarek F. Gharib}, title = {A New Protein Structure Representation for Efficient Protein Function Prediction}, journal = {J. Comput. Biol.}, volume = {21}, number = {12}, pages = {936--946}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0137}, doi = {10.1089/CMB.2014.0137}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/MaghawryMG14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/MazzaGS14, author = {Arnon Mazza and Irit Gat{-}Viks and Roded Sharan}, title = {Elucidating Influenza Inhibition Pathways via Network Reconstruction}, journal = {J. Comput. Biol.}, volume = {21}, number = {5}, pages = {394--404}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0147}, doi = {10.1089/CMB.2013.0147}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/MazzaGS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/MontgolfierRR14, author = {Fabien de Montgolfier and Mathieu Raffinot and Irena Rusu}, title = {Easy Identification of Generalized Common and Conserved Nested Intervals}, journal = {J. Comput. Biol.}, volume = {21}, number = {7}, pages = {520--533}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0146}, doi = {10.1089/CMB.2013.0146}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/MontgolfierRR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/Neuwald14, author = {Andrew F. Neuwald}, title = {A Bayesian Sampler for Optimization of Protein Domain Hierarchies}, journal = {J. Comput. Biol.}, volume = {21}, number = {3}, pages = {269--286}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0099}, doi = {10.1089/CMB.2013.0099}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/Neuwald14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/Neuwald14a, author = {Andrew F. Neuwald}, title = {Evaluating, Comparing, and Interpreting Protein Domain Hierarchies}, journal = {J. Comput. Biol.}, volume = {21}, number = {4}, pages = {287--302}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0098}, doi = {10.1089/CMB.2013.0098}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/Neuwald14a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/NguyenVW14, author = {Nha Nguyen and An P. N. Vo and Kyoung{-}Jae Won}, title = {A Wavelet Approach to Detect Enriched Regions and Explore Epigenomic Landscapes}, journal = {J. Comput. Biol.}, volume = {21}, number = {11}, pages = {846--854}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0095}, doi = {10.1089/CMB.2014.0095}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/NguyenVW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/NoeM14, author = {Laurent No{\'{e}} and Donald E. K. Martin}, title = {A Coverage Criterion for Spaced Seeds and Its Applications to Support Vector Machine String Kernels and \emph{k}-Mer Distances}, journal = {J. Comput. Biol.}, volume = {21}, number = {12}, pages = {947--963}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0173}, doi = {10.1089/CMB.2014.0173}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/NoeM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/ONeillFE14, author = {Patrick K. O'Neill and Robert Forder and Ivan Erill}, title = {Informational Requirements for Transcriptional Regulation}, journal = {J. Comput. Biol.}, volume = {21}, number = {5}, pages = {373--384}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0032}, doi = {10.1089/CMB.2014.0032}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/ONeillFE14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/OuangraouaR14, author = {A{\"{\i}}da Ouangraoua and Mathieu Raffinot}, title = {On the Identification of Conflicting Contiguities in Ancestral Genome Reconstruction}, journal = {J. Comput. Biol.}, volume = {21}, number = {1}, pages = {64--79}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0086}, doi = {10.1089/CMB.2013.0086}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/OuangraouaR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/PerisM14, author = {Guillermo Peris and Andr{\'{e}}s Marzal}, title = {Statistical Significance of Normalized Global Alignment}, journal = {J. Comput. Biol.}, volume = {21}, number = {3}, pages = {257--268}, year = {2014}, url = {https://doi.org/10.1089/cmb.2012.0167}, doi = {10.1089/CMB.2012.0167}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/PerisM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/PlewczynskiPGRG14, author = {Dariusz Plewczynski and Anna Philips and Marcin von Grotthuss and Leszek Rychlewski and Krzysztof Ginalski}, title = {HarmonyDOCK: The Structural Analysis of Poses in Protein-Ligand Docking}, journal = {J. Comput. Biol.}, volume = {21}, number = {3}, pages = {247--256}, year = {2014}, url = {https://doi.org/10.1089/cmb.2009.0111}, doi = {10.1089/CMB.2009.0111}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/PlewczynskiPGRG14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/RaduC14, author = {Alex Radu and Michael A. Charleston}, title = {Node Fingerprinting: An Efficient Heuristic for Aligning Biological Networks}, journal = {J. Comput. Biol.}, volume = {21}, number = {10}, pages = {760--770}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0114}, doi = {10.1089/CMB.2014.0114}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/RaduC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/RamKTS14, author = {Hari Ram and Alok Kumar and Lebin Thomas and Ved Pal Singh}, title = {\emph{In silico} Approach to Study Adaptive Divergence in Nucleotide Composition of the 16S rRNA Gene Among Bacteria Thriving Under Different Temperature Regimes}, journal = {J. Comput. Biol.}, volume = {21}, number = {10}, pages = {753--759}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0116}, doi = {10.1089/CMB.2014.0116}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/RamKTS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/ReyesVD14, author = {Jos{\'{e}} Santos Reyes and Pablo Villot and Mart{\'{\i}}n Di{\'{e}}guez}, title = {Emergent Protein Folding Modeled with Evolved Neural Cellular Automata Using the 3D {HP} Model}, journal = {J. Comput. Biol.}, volume = {21}, number = {11}, pages = {823--845}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0077}, doi = {10.1089/CMB.2014.0077}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/ReyesVD14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/SaravanaramanCB14, author = {Ponne Saravanaraman and Raj Kumar Chinnadurai and Rathanam Boopathy}, title = {A New Role for the Nonpathogenic Nonsynonymous Single-Nucleotide Polymorphisms of Acetylcholinesterase in the Treatment of Alzheimer's Disease: {A} Computational Study}, journal = {J. Comput. Biol.}, volume = {21}, number = {8}, pages = {632--647}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0005}, doi = {10.1089/CMB.2014.0005}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/SaravanaramanCB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/SharovNQDLSK14, author = {Alexei A. Sharov and Akira Nishiyama and Yong Qian and Dawood B. Dudekula and Dan L. Longo and David Schlessinger and Minoru S. H. Ko}, title = {Chromatin Properties of Regulatory {DNA} Probed by Manipulation of Transcription Factors}, journal = {J. Comput. Biol.}, volume = {21}, number = {8}, pages = {569--577}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0126}, doi = {10.1089/CMB.2013.0126}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/SharovNQDLSK14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/Stepancic14, author = {Ziva Stepancic}, title = {Enhancing Gibbs Sampling Method for Motif Finding in {DNA} with Initial Graph Representation of Sequences}, journal = {J. Comput. Biol.}, volume = {21}, number = {10}, pages = {741--752}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0106}, doi = {10.1089/CMB.2014.0106}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/Stepancic14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/TabbZHR14, author = {Loni Philip Tabb and Wei Zhao and Jingyu Huang and Gail L. Rosen}, title = {Characterizing the Empirical Distribution of Prokaryotic Genome \emph{n}-mers in the Presence of Nullomers}, journal = {J. Comput. Biol.}, volume = {21}, number = {10}, pages = {732--740}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0108}, doi = {10.1089/CMB.2014.0108}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/TabbZHR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/TzouLPHL14, author = {Wen{-}Shyong Tzou and Ying{-}Tsang Lo and Tun{-}Wen Pai and Chin{-}Hua Hu and Chung{-}Hao Li}, title = {Stochastic Simulation of Notch Signaling Reveals Novel Factors That Mediate the Differentiation of Neural Stem Cells}, journal = {J. Comput. Biol.}, volume = {21}, number = {7}, pages = {548--567}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0022}, doi = {10.1089/CMB.2014.0022}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/TzouLPHL14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/VexlerCY14, author = {Albert Vexler and Xiwei Chen and Jihnhee Yu}, title = {Evaluations and Comparisons of Treatment Effects Based on Best Combinations of Biomarkers with Applications to Biomedical Studies}, journal = {J. Comput. Biol.}, volume = {21}, number = {9}, pages = {709--721}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0097}, doi = {10.1089/CMB.2014.0097}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/VexlerCY14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/Voorkamp14, author = {Josh Voorkamp}, title = {Maximal Acyclic Agreement Forests}, journal = {J. Comput. Biol.}, volume = {21}, number = {10}, pages = {723--731}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0093}, doi = {10.1089/CMB.2014.0093}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/Voorkamp14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/WaldispuhlOWDBB14, author = {J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl and Charles W. O'Donnell and Sebastian Will and Srinivas Devadas and Rolf Backofen and Bonnie Berger}, title = {Simultaneous Alignment and Folding of Protein Sequences}, journal = {J. Comput. Biol.}, volume = {21}, number = {7}, pages = {477--491}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0163}, doi = {10.1089/CMB.2013.0163}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/WaldispuhlOWDBB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/WangJI14, author = {Junshan Wang and Ajay Jasra and Maria De Iorio}, title = {Computational Methods for a Class of Network Models}, journal = {J. Comput. Biol.}, volume = {21}, number = {2}, pages = {141--161}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0082}, doi = {10.1089/CMB.2013.0082}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/WangJI14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/WangMC14, author = {Xun Wang and Ying Miao and Minquan Cheng}, title = {Finding Motifs in {DNA} Sequences Using Low-Dispersion Sequences}, journal = {J. Comput. Biol.}, volume = {21}, number = {4}, pages = {320--329}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0054}, doi = {10.1089/CMB.2013.0054}, timestamp = {Tue, 29 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/WangMC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/WangXS14, author = {Zhiyong Wang and Jinbo Xu and Xinghua Shi}, title = {Finding Alternative Expression Quantitative Trait Loci by Exploring Sparse Model Space}, journal = {J. Comput. Biol.}, volume = {21}, number = {5}, pages = {385--393}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0026}, doi = {10.1089/CMB.2014.0026}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/WangXS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/X14, title = {Correction: Journal of Computational Biology: 2014; 21/4: 303-319}, journal = {J. Comput. Biol.}, volume = {21}, number = {6}, pages = {476}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.Cor1}, doi = {10.1089/CMB.2014.COR1}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/X14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/YinYW14, author = {Changchuan Yin and Xuemeng E. Yin and Jiasong Wang}, title = {A Novel Method for Comparative Analysis of {DNA} Sequences by Ramanujan-Fourier Transform}, journal = {J. Comput. Biol.}, volume = {21}, number = {12}, pages = {867--879}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0120}, doi = {10.1089/CMB.2014.0120}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/YinYW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/ZhengKT14, author = {Chaozhi Zheng and Mary K. Kuhner and Elizabeth A. Thompson}, title = {Joint Inference of Identity by Descent Along Multiple Chromosomes from Population Samples}, journal = {J. Comput. Biol.}, volume = {21}, number = {3}, pages = {185--200}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0140}, doi = {10.1089/CMB.2013.0140}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/ZhengKT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/ZhengZ14, author = {Yu Zheng and Louxin Zhang}, title = {Are the Duplication Cost and Robinson-Foulds Distance Equivalent?}, journal = {J. Comput. Biol.}, volume = {21}, number = {8}, pages = {578--590}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0021}, doi = {10.1089/CMB.2014.0021}, timestamp = {Tue, 12 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/ZhengZ14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/ZhongZ14, author = {Cuncong Zhong and Shaojie Zhang}, title = {Simultaneous Folding of Alternative {RNA} Structures with Mutual Constraints: An Application to Next-Generation Sequencing-based {RNA} Structure Probing}, journal = {J. Comput. Biol.}, volume = {21}, number = {8}, pages = {609--621}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0044}, doi = {10.1089/CMB.2013.0044}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/ZhongZ14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/ZhuH14, author = {Peican Zhu and Jie Han}, title = {Asynchronous Stochastic Boolean Networks as Gene Network Models}, journal = {J. Comput. Biol.}, volume = {21}, number = {10}, pages = {771--783}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0057}, doi = {10.1089/CMB.2014.0057}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/ZhuH14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/ZhukovaS14, author = {Anna Zhukova and David James Sherman}, title = {Knowledge-based Generalization of Metabolic Models}, journal = {J. Comput. Biol.}, volume = {21}, number = {7}, pages = {534--547}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0143}, doi = {10.1089/CMB.2013.0143}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/ZhukovaS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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