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@article{DBLP:journals/isb/BogdanovDG03,
author = {Yuri F. Bogdanov and
Sergei Y. Dadashev and
Tatiana M. Grishaeva},
title = {In silico search for functionally similar proteins involved in meiosis
and recombination in evolutionarily distant organisms},
journal = {Silico Biol.},
volume = {3},
number = {1-2},
pages = {173--185},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00086},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/BogdanovDG03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/Carugo03,
author = {Oliviero Carugo},
title = {Prediction of protein polypeptide fragments exposed to the solvent},
journal = {Silico Biol.},
volume = {3},
number = {4},
pages = {417--428},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00106},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/Carugo03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/ChenH03,
author = {Ming Chen and
Ralf Hofest{\"{a}}dt},
title = {Quantitative Petri net model of gene regulated metabolic networks
in the cell},
journal = {Silico Biol.},
volume = {3},
number = {3},
pages = {347--365},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00101},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/ChenH03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/CreightonH03,
author = {Chad Creighton and
Samir Hanash},
title = {Expression of matrix metalloproteinase 9 (MMP-9/gelatinase {B)} in
adenocarcinomas strongly correlated with expression of immune response
genes},
journal = {Silico Biol.},
volume = {3},
number = {3},
pages = {301--311},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00097},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/CreightonH03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/Cuperlovic-CulfRNO03,
author = {Miroslava Cuperlovic{-}Culf and
Gilles A. Robichaud and
Michel Nardini and
Rodney Ouellette},
title = {Investigation of interaction between Pax5 isoforms and thioredoxin
using de novo modelling methods},
journal = {Silico Biol.},
volume = {3},
number = {4},
pages = {453--469},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00109},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/Cuperlovic-CulfRNO03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/DanilovaLG03,
author = {Ludmila V. Danilova and
Vassily A. Lyubetsky and
Mikhail S. Gelfand},
title = {An algorithm for identification of regulatory signals in unaligned
{DNA} sequences, its testing and parallel implementation},
journal = {Silico Biol.},
volume = {3},
number = {1-2},
pages = {33--47},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00075},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/DanilovaLG03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/DasC03,
author = {Soumita Das and
Keya Chaudhuri},
title = {Identification of a unique {IAHP} (IcmF associated homologous proteins)
cluster in Vibrio cholerae and other proteobacteria through in silico
analysis},
journal = {Silico Biol.},
volume = {3},
number = {3},
pages = {287--300},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00096},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/DasC03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/FreierHL03,
author = {Andreas Freier and
Ralf Hofest{\"{a}}dt and
Matthias Lange},
title = {{IIUDB:} An object-oriented system for modelling, integration and
analysis of gene controlled metabolic networks},
journal = {Silico Biol.},
volume = {3},
number = {1-2},
pages = {215--227},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00090},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/FreierHL03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/FuellenSCL03,
author = {Georg Fuellen and
Michael Spitzer and
Paul Cullen and
Stefan Lorkowski},
title = {BLASTing proteomes, yielding phylogenies},
journal = {Silico Biol.},
volume = {3},
number = {3},
pages = {313--319},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00098},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/FuellenSCL03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/Galitsky03,
author = {Boris A. Galitsky},
title = {Revealing the set of mutually correlated positions for the protein
families of immunoglobulin fold},
journal = {Silico Biol.},
volume = {3},
number = {3},
pages = {241--264},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00093},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/Galitsky03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/GorbanZP03,
author = {Alexander N. Gorban and
Andrei Yu. Zinovyev and
Tatyana G. Popova},
title = {Seven clusters in genomic triplet distributions},
journal = {Silico Biol.},
volume = {3},
number = {4},
pages = {471--482},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00110},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/GorbanZP03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/JanakiJ03,
author = {Chintalapati Janaki and
Rajendra R. Joshi},
title = {Accelerating comparative genomics using parallel computing},
journal = {Silico Biol.},
volume = {3},
number = {4},
pages = {429--440},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00107},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/JanakiJ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/KalininaMSGR03,
author = {Olga V. Kalinina and
Vsevolod J. Makeev and
Roman A. Sutormin and
Mikhail S. Gelfand and
Aleksandra B. Rakhmaninova},
title = {The channel in transporters is formed by residues that are rare in
transmembrane helices},
journal = {Silico Biol.},
volume = {3},
number = {1-2},
pages = {197--204},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00088},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/KalininaMSGR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/KazakovVGOO03,
author = {Alexei E. Kazakov and
Olga Vassieva and
Mikhail S. Gelfand and
Andrei Osterman and
Ross A. Overbeek},
title = {Bioinformatics classification and functional analysis of PhoH homologs},
journal = {Silico Biol.},
volume = {3},
number = {1-2},
pages = {3--15},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00073},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/KazakovVGOO03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/KeckW03,
author = {Hans{-}Peter Keck and
Thomas Wetter},
title = {Functional classification of proteins using a nearest neighbour algorithm},
journal = {Silico Biol.},
volume = {3},
number = {3},
pages = {265--275},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00094},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/KeckW03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/Kel-MargoulisTKGHLW03,
author = {Olga V. Kel{-}Margoulis and
Dmitri Tchekmenev and
Alexander E. Kel and
Ellen G{\"{o}}{\ss}ling and
Klaus Hornischer and
Birgit Lewicki{-}Potapov and
Edgar Wingender},
title = {Composition-sensitive analysis of the human genome for regulatory
signals},
journal = {Silico Biol.},
volume = {3},
number = {1-2},
pages = {145--171},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00084},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/Kel-MargoulisTKGHLW03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/KolchanovH03,
author = {Nikolay A. Kolchanov and
Ralf Hofest{\"{a}}dt},
title = {The 3rd International Conference on Bioinformatics of Genome Regulation
and Structure {(BGRS} 2002) - Preface},
journal = {Silico Biol.},
volume = {3},
number = {1-2},
pages = {1--2},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00072},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/KolchanovH03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/LevitskyK03,
author = {Victor G. Levitsky and
Alexey V. Katokhin},
title = {Recognition of eukaryotic promoters using a genetic algorithm based
on iterative discriminant analysis},
journal = {Silico Biol.},
volume = {3},
number = {1-2},
pages = {81--87},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00079},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/LevitskyK03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/LockwoodF03,
author = {Christopher R. Lockwood and
Timothy M. Frayling},
title = {Combining genome and mouse knockout expression data to highlight binding
sites for the transcription factor HNF1alpha},
journal = {Silico Biol.},
volume = {3},
number = {1-2},
pages = {57--70},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00077},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/LockwoodF03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/LyubetskyV03,
author = {Vassily A. Lyubetsky and
Vladimir V. V'yugin},
title = {Methods of horizontal gene transfer determination using phylogenetic
data},
journal = {Silico Biol.},
volume = {3},
number = {1-2},
pages = {17--31},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00074},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/LyubetskyV03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/MatsunoTADMM03,
author = {Hiroshi Matsuno and
Yukiko Tanaka and
Hitoshi Aoshima and
Atsushi Doi and
Mika Matsui and
Satoru Miyano},
title = {Biopathways representation and simulation on hybrid functional Petri
net},
journal = {Silico Biol.},
volume = {3},
number = {3},
pages = {389--404},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00103},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/MatsunoTADMM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/NandiKR03,
author = {Tannistha Nandi and
Krishnamoorthy Kannan and
Srinivasan Ramachandran},
title = {The low complexity proteins from enteric pathogenic bacteria: Taxonomic
parallels embedded in diversity},
journal = {Silico Biol.},
volume = {3},
number = {3},
pages = {277--285},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00095},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/NandiKR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/NizolenkoBNYG03,
author = {Lily Ph. Nizolenko and
Alexander G. Bachinsky and
Andrey N. Naumochkin and
Andrey A. Yarigin and
Dmitry A. Grigorovich},
title = {Database of patterns PROF{\_}PAT, used to detect local similarities},
journal = {Silico Biol.},
volume = {3},
number = {1-2},
pages = {205--213},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00089},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/NizolenkoBNYG03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/PetrowskySB03,
author = {Nikolai Petrovsky and
Christian Sch{\"{o}}nbach and
Vladimir Brusic},
title = {Bioinformatic strategies for better understanding of immune function},
journal = {Silico Biol.},
volume = {3},
number = {4},
pages = {411--416},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00105},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/PetrowskySB03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/PospisilHPR03,
author = {Heike Pospisil and
Alexander Herrmann and
Harald Pankow and
Jens G. Reich},
title = {A database on alternative splice forms on the Integrated Genetic Map
Service {(IGMS)}},
journal = {Silico Biol.},
volume = {3},
number = {1-2},
pages = {229--234},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00091},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/PospisilHPR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/SchwarzlHSF03,
author = {Sonja M. Schwarzl and
Danzhi Huang and
Jeremy C. Smith and
Stefan Fischer},
title = {How well does charge reparametrisation account for solvent screening
in molecular mechanics calculations? The example of myosin},
journal = {Silico Biol.},
volume = {3},
number = {1-2},
pages = {187--196},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00087},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/SchwarzlHSF03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/ShelestKGW03,
author = {Ekaterina Shelest and
Alexander E. Kel and
Ellen G{\"{o}}{\ss}ling and
Edgar Wingender},
title = {Prediction of potential C/EBP/NF-kappaB composite elements using matrix-based
search methods},
journal = {Silico Biol.},
volume = {3},
number = {1-2},
pages = {71--79},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00078},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/ShelestKGW03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/SmirnovaS03,
author = {Olga G. Smirnova and
Irina L. Stepanenko},
title = {Application of filter technology in Photomorphogenesis Gene Network},
journal = {Silico Biol.},
volume = {3},
number = {1-2},
pages = {117--125},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00082},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/SmirnovaS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/SpirovH03,
author = {Alexander V. Spirov and
David M. Holloway},
title = {Making the body plan: Precision in the genetic hierarchy of Drosophila
embryo segmentation},
journal = {Silico Biol.},
volume = {3},
number = {1-2},
pages = {89--100},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00080},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/SpirovH03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/StavrovskayaM03,
author = {Elena D. Stavrovskaya and
Andrey A. Mironov},
title = {Two genetic algorithms for identification of regulatory signals},
journal = {Silico Biol.},
volume = {3},
number = {1-2},
pages = {49--56},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00076},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/StavrovskayaM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/TakaiJ03,
author = {Daiya Takai and
Peter A. Jones},
title = {The CpG Island Searcher: {A} new {WWW} resource},
journal = {Silico Biol.},
volume = {3},
number = {3},
pages = {235--240},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00092},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/TakaiJ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/TchuraevG03,
author = {Rustem N. Tchuraev and
Alexander V. Galimzyanov},
title = {Parametric stability evaluation in computer experiments on the mathematical
model of Drosophila control gene subnetwork},
journal = {Silico Biol.},
volume = {3},
number = {1-2},
pages = {101--115},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00081},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/TchuraevG03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/TechM03,
author = {Maike Tech and
Rainer Merkl},
title = {{YACOP:} Enhanced gene prediction obtained by a combination of existing
methods},
journal = {Silico Biol.},
volume = {3},
number = {4},
pages = {441--451},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00108},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/TechM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/VandenbogaertM03,
author = {Mathias Vandenbogaert and
Vsevolod J. Makeev},
title = {Analysis of bacterial RM-Systems through genome-scale analysis and
related taxonomic issues},
journal = {Silico Biol.},
volume = {3},
number = {1-2},
pages = {127--143},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00083},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/VandenbogaertM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/VossHK03,
author = {Klaus Voss and
Monika Heiner and
Ina Koch},
title = {Steady state analysis of metabolic pathways using Petri nets},
journal = {Silico Biol.},
volume = {3},
number = {3},
pages = {367--387},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00102},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/VossHK03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/WiezerM03,
author = {Arnim Wiezer and
Rainer Merkl},
title = {secureBLAST},
journal = {Silico Biol.},
volume = {3},
number = {4},
pages = {405--409},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00104},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/WiezerM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/Zevedei-OanceaS03,
author = {Ionela Zevedei{-}Oancea and
Stefan Schuster},
title = {Topological analysis of metabolic networks based on Petri net theory},
journal = {Silico Biol.},
volume = {3},
number = {3},
pages = {323--345},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00100},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/Zevedei-OanceaS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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