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@article{DBLP:journals/biodatamining/Al-AjlanA18,
author = {Amani Al{-}Ajlan and
Achraf El Allali},
title = {Feature selection for gene prediction in metagenomic fragments},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {9:1--9:12},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0170-z},
doi = {10.1186/S13040-018-0170-Z},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/Al-AjlanA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ArabnejadDBWHM18,
author = {M. Arabnejad and
Bryan A. Dawkins and
William S. Bush and
Bill C. White and
A. R. Harkness and
Brett A. McKinney},
title = {Transition-transversion encoding and genetic relationship metric in
ReliefF feature selection improves pathway enrichment in {GWAS}},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {23:1--23:17},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0186-4},
doi = {10.1186/S13040-018-0186-4},
timestamp = {Tue, 13 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ArabnejadDBWHM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/BouzagloCT18,
author = {David Bouzaglo and
Israel Chasida and
Elishai Ezra Tsur},
title = {Distributed retrieval engine for the development of cloud-deployed
biological databases},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {26:1--26:10},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0185-5},
doi = {10.1186/S13040-018-0185-5},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/BouzagloCT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/BresterKTVRRSK18,
author = {Christina Brester and
Jussi Kauhanen and
Tomi{-}Pekka Tuomainen and
Sari Voutilainen and
Mauno R{\"{o}}nkk{\"{o}} and
Kimmo Ronkainen and
Eugene Semenkin and
Mikko Kolehmainen},
title = {Evolutionary methods for variable selection in the epidemiological
modeling of cardiovascular diseases},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {18:1--18:14},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0180-x},
doi = {10.1186/S13040-018-0180-X},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/BresterKTVRRSK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/CappelliFW18,
author = {Eleonora Cappelli and
Giovanni Felici and
Emanuel Weitschek},
title = {Combining {DNA} methylation and {RNA} sequencing data of cancer for
supervised knowledge extraction},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {22:1--22:23},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0184-6},
doi = {10.1186/S13040-018-0184-6},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/CappelliFW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/CarrasquinhaVLV18,
author = {Eunice Carrasquinha and
Andr{\'{e}} Ver{\'{\i}}ssimo and
Marta B. Lopes and
Susana Vinga},
title = {Identification of influential observations in high-dimensional cancer
survival data through the rank product test},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {1:1--1:14},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0162-z},
doi = {10.1186/S13040-018-0162-Z},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/CarrasquinhaVLV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ChenTWDHG18,
author = {Kathleen M. Chen and
Jie Tan and
Gregory P. Way and
Georgia Doing and
Deborah A. Hogan and
Casey S. Greene},
title = {PathCORE-T: identifying and visualizing globally co-occurring pathways
in large transcriptomic compendia},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {14:1--14:20},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0175-7},
doi = {10.1186/S13040-018-0175-7},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ChenTWDHG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/DorpinghausSJ18,
author = {Jens D{\"{o}}rpinghaus and
Sebastian Schaaf and
Marc Jacobs},
title = {Soft document clustering using a novel graph covering approach},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {11:1--11:20},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0172-x},
doi = {10.1186/S13040-018-0172-X},
timestamp = {Wed, 14 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/DorpinghausSJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/EfimovaTPVADOKL18,
author = {Daria Efimova and
Alexander V. Tyakht and
Anna S. Popenko and
Anatoly N. Vasilyev and
Ilya A. Altukhov and
Nikita V. Dovidchenko and
Vera Odintsova and
Natalya Klimenko and
Robert Loshkarev and
Maria Pashkova and
Anna Elizarova and
Viktoriya Voroshilova and
Sergei Slavskii and
Yury Pekov and
Ekaterina Filippova and
Tatiana Shashkova and
Evgenii Levin and
Dmitry G. Alexeev},
title = {Knomics-Biota - a system for exploratory analysis of human gut microbiota
data},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {25:1--25:7},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0187-3},
doi = {10.1186/S13040-018-0187-3},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/EfimovaTPVADOKL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/FerreroA18,
author = {Enrico Ferrero and
Pankaj Agarwal},
title = {Connecting genetics and gene expression data for target prioritisation
and drug repositioning},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {7:1--7:9},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0171-y},
doi = {10.1186/S13040-018-0171-Y},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/FerreroA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Gutierrez-Aviles18,
author = {David Guti{\'{e}}rrez{-}Avil{\'{e}}s and
Ra{\'{u}}l Gir{\'{a}}ldez and
Francisco Javier Gil{-}Cumbreras and
Cristina Rubio{-}Escudero},
title = {{TRIQ:} a new method to evaluate triclusters},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {15:1--15:29},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0177-5},
doi = {10.1186/S13040-018-0177-5},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Gutierrez-Aviles18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LeeSKYP18,
author = {Seungyeoun Lee and
Donghee Son and
Yongkang Kim and
Wenbao Yu and
Taesung Park},
title = {Unified Cox model based multifactor dimensionality reduction method
for gene-gene interaction analysis of the survival phenotype},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {27:1--27:13},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0189-1},
doi = {10.1186/S13040-018-0189-1},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/LeeSKYP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LiLDS18,
author = {Catherine Li and
Juyon Lee and
Jessica Ding and
Shuying Sun},
title = {Integrative analysis of gene expression and methylation data for breast
cancer cell lines},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {13:1--13:16},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0174-8},
doi = {10.1186/S13040-018-0174-8},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LiLDS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LiLXDXH18,
author = {Weifu Li and
Jing Liu and
Chi Xiao and
Hao Deng and
Qiwei Xie and
Hua Han},
title = {A fast forward 3D connection algorithm for mitochondria and synapse
segmentations from serial {EM} images},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {24:1--24:15},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0183-7},
doi = {10.1186/S13040-018-0183-7},
timestamp = {Fri, 15 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LiLXDXH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MathurRMSM18,
author = {Ravi Mathur and
Daniel M. Rotroff and
Jun Ma and
Ali Shojaie and
Alison A. Motsinger{-}Reif},
title = {Gene set analysis methods: a systematic comparison},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {8:1--8:19},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0166-8},
doi = {10.1186/S13040-018-0166-8},
timestamp = {Mon, 31 Oct 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/MathurRMSM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MrzicMBMCGL18,
author = {Aida Mrzic and
Pieter Meysman and
Wout Bittremieux and
Pieter Moris and
Boris Cule and
Bart Goethals and
Kris Laukens},
title = {Grasping frequent subgraph mining for bioinformatics applications},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {20:1--20:24},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0181-9},
doi = {10.1186/S13040-018-0181-9},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MrzicMBMCGL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/NepomucenoTNA18,
author = {Juan A. Nepomuceno and
Alicia Troncoso and
Isabel A. Nepomuceno{-}Chamorro and
Jes{\'{u}}s S. Aguilar{-}Ruiz},
title = {Pairwise gene GO-based measures for biclustering of high-dimensional
expression data},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {4:1--4:19},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0165-9},
doi = {10.1186/S13040-018-0165-9},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/NepomucenoTNA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Parraga-AlavaDI18,
author = {Jorge Parraga{-}Alava and
M{\'{a}}rcio Dorn and
Mario Inostroza{-}Ponta},
title = {A multi-objective gene clustering algorithm guided by apriori biological
knowledge with intensification and diversification strategies},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {16:1--16:22},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0178-4},
doi = {10.1186/S13040-018-0178-4},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Parraga-AlavaDI18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PietteM18,
author = {Elizabeth R. Piette and
Jason H. Moore},
title = {Improving machine learning reproducibility in genetic association
studies with proportional instance cross validation {(PICV)}},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {6:1--6:11},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0167-7},
doi = {10.1186/S13040-018-0167-7},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/PietteM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/QinL18,
author = {Wenyi Qin and
Hui Lu},
title = {A novel joint analysis framework improves identification of differentially
expressed genes in cross disease transcriptomic analysis},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {3:1--3:17},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0163-y},
doi = {10.1186/S13040-018-0163-Y},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/QinL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SipperFAM18,
author = {Moshe Sipper and
Weixuan Fu and
Karuna Ahuja and
Jason H. Moore},
title = {Investigating the parameter space of evolutionary algorithms},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {2:1--2:14},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0164-x},
doi = {10.1186/S13040-018-0164-X},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SipperFAM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SipperUM18,
author = {Moshe Sipper and
Ryan J. Urbanowicz and
Jason H. Moore},
title = {To know the objective is not (necessarily) to know the objective function},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {21:1--21:3},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0182-8},
doi = {10.1186/S13040-018-0182-8},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/SipperUM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/TiptonCHGKSDDMG18,
author = {Laura Tipton and
Karen T. Cuenco and
Laurence Huang and
Ruth M. Greenblatt and
Eric Kleerup and
Frank C. Sciurba and
Steven R. Duncan and
Michael P. Donahoe and
Alison Morris and
Elodie Ghedin},
title = {Measuring associations between the microbiota and repeated measures
of continuous clinical variables using a lasso-penalized generalized
linear mixed model},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {12:1--12:20},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0173-9},
doi = {10.1186/S13040-018-0173-9},
timestamp = {Tue, 04 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/TiptonCHGKSDDMG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ToFR18,
author = {Kimberly To and
Rebecca C. Fry and
David M. Reif},
title = {Characterizing the effects of missing data and evaluating imputation
methods for chemical prioritization applications using ToxPi},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {10:1--10:12},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0169-5},
doi = {10.1186/S13040-018-0169-5},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ToFR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/VermaLZVDLLUMKR18,
author = {Shefali S. Verma and
Anastasia Lucas and
Xinyuan Zhang and
Yogasudha Veturi and
Scott M. Dudek and
Binglan Li and
Ruowang Li and
Ryan J. Urbanowicz and
Jason H. Moore and
Dokyoon Kim and
Marylyn D. Ritchie},
title = {Collective feature selection to identify crucial epistatic variants},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {5:1--5:22},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0168-6},
doi = {10.1186/S13040-018-0168-6},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/VermaLZVDLLUMKR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/YangWLCC18,
author = {Cheng{-}Hong Yang and
Kuo{-}Chuan Wu and
Yu{-}Shiun Lin and
Li{-}Yeh Chuang and
Hsueh{-}Wei Chang},
title = {Protein folding prediction in the {HP} model using ions motion optimization
with a greedy algorithm},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {17:1--17:14},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0176-6},
doi = {10.1186/S13040-018-0176-6},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/YangWLCC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZhangWDX18,
author = {Jing Zhang and
Dan Wu and
Yiqin Dai and
Jianjiang Xu},
title = {Functional relevance for central cornea thickness-associated genetic
variants by using integrative analyses},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {19:1--19:13},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0179-3},
doi = {10.1186/S13040-018-0179-3},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ZhangWDX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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