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@inproceedings{DBLP:conf/cmsb/AbbasRBSG17,
  author       = {Houssam Abbas and
                  Al{\"{e}}na Rodionova and
                  Ezio Bartocci and
                  Scott A. Smolka and
                  Radu Grosu},
  editor       = {J{\'{e}}r{\^{o}}me Feret and
                  Heinz Koeppl},
  title        = {Quantitative Regular Expressions for Arrhythmia Detection Algorithms},
  booktitle    = {Computational Methods in Systems Biology - 15th International Conference,
                  {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10545},
  pages        = {23--39},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67471-1\_2},
  doi          = {10.1007/978-3-319-67471-1\_2},
  timestamp    = {Mon, 18 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cmsb/AbbasRBSG17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/cmsb/BarnatBBDHPS17,
  author       = {Jiri Barnat and
                  Nikola Benes and
                  Lubos Brim and
                  Martin Demko and
                  Matej Hajnal and
                  Samuel Pastva and
                  David Safr{\'{a}}nek},
  editor       = {J{\'{e}}r{\^{o}}me Feret and
                  Heinz Koeppl},
  title        = {Detecting Attractors in Biological Models with Uncertain Parameters},
  booktitle    = {Computational Methods in Systems Biology - 15th International Conference,
                  {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10545},
  pages        = {40--56},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67471-1\_3},
  doi          = {10.1007/978-3-319-67471-1\_3},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cmsb/BarnatBBDHPS17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/cmsb/BianeD17,
  author       = {C{\'{e}}lia Biane and
                  Franck Delaplace},
  editor       = {J{\'{e}}r{\^{o}}me Feret and
                  Heinz Koeppl},
  title        = {Abduction Based Drug Target Discovery Using Boolean Control Network},
  booktitle    = {Computational Methods in Systems Biology - 15th International Conference,
                  {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10545},
  pages        = {57--73},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67471-1\_4},
  doi          = {10.1007/978-3-319-67471-1\_4},
  timestamp    = {Mon, 18 Sep 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cmsb/BianeD17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/cmsb/BobaH17,
  author       = {Patrick Boba and
                  Kay Hamacher},
  editor       = {J{\'{e}}r{\^{o}}me Feret and
                  Heinz Koeppl},
  title        = {TransferEntropyPT: An {R} Package to Assess Transfer Entropies via
                  Permutation Tests},
  booktitle    = {Computational Methods in Systems Biology - 15th International Conference,
                  {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10545},
  pages        = {285--290},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67471-1\_17},
  doi          = {10.1007/978-3-319-67471-1\_17},
  timestamp    = {Mon, 18 Sep 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cmsb/BobaH17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/cmsb/CamporesiFL17,
  author       = {Ferdinanda Camporesi and
                  J{\'{e}}r{\^{o}}me Feret and
                  Kim Quy{\^{e}}n L{\'{y}}},
  editor       = {J{\'{e}}r{\^{o}}me Feret and
                  Heinz Koeppl},
  title        = {KaDE: {A} Tool to Compile Kappa Rules into (Reduced) {ODE} Models},
  booktitle    = {Computational Methods in Systems Biology - 15th International Conference,
                  {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10545},
  pages        = {291--299},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67471-1\_18},
  doi          = {10.1007/978-3-319-67471-1\_18},
  timestamp    = {Mon, 18 Sep 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cmsb/CamporesiFL17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/cmsb/CarcanoFS17,
  author       = {Arthur Carcano and
                  Fran{\c{c}}ois Fages and
                  Sylvain Soliman},
  editor       = {J{\'{e}}r{\^{o}}me Feret and
                  Heinz Koeppl},
  title        = {Probably Approximately Correct Learning of Regulatory Networks from
                  Time-Series Data},
  booktitle    = {Computational Methods in Systems Biology - 15th International Conference,
                  {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10545},
  pages        = {74--90},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67471-1\_5},
  doi          = {10.1007/978-3-319-67471-1\_5},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/cmsb/CarcanoFS17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/cmsb/CoquetTLD17,
  author       = {Jean Coquet and
                  Nathalie Th{\'{e}}ret and
                  Vincent Legagneux and
                  Olivier Dameron},
  editor       = {J{\'{e}}r{\^{o}}me Feret and
                  Heinz Koeppl},
  title        = {Identifying Functional Families of Trajectories in Biological Pathways
                  by Soft Clustering: Application to TGF-{\(\beta\)} Signaling},
  booktitle    = {Computational Methods in Systems Biology - 15th International Conference,
                  {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10545},
  pages        = {91--107},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67471-1\_6},
  doi          = {10.1007/978-3-319-67471-1\_6},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cmsb/CoquetTLD17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/cmsb/CumminsGHM17,
  author       = {Bree Cummins and
                  Tom{\'{a}}s Gedeon and
                  Shaun Harker and
                  Konstantin Mischaikow},
  editor       = {J{\'{e}}r{\^{o}}me Feret and
                  Heinz Koeppl},
  title        = {Database of Dynamic Signatures Generated by Regulatory Networks {(DSGRN)}},
  booktitle    = {Computational Methods in Systems Biology - 15th International Conference,
                  {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10545},
  pages        = {300--308},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67471-1\_19},
  doi          = {10.1007/978-3-319-67471-1\_19},
  timestamp    = {Mon, 18 Sep 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cmsb/CumminsGHM17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/cmsb/FagesGBP17,
  author       = {Fran{\c{c}}ois Fages and
                  Guillaume Le Guludec and
                  Olivier Bournez and
                  Amaury Pouly},
  editor       = {J{\'{e}}r{\^{o}}me Feret and
                  Heinz Koeppl},
  title        = {Strong Turing Completeness of Continuous Chemical Reaction Networks
                  and Compilation of Mixed Analog-Digital Programs},
  booktitle    = {Computational Methods in Systems Biology - 15th International Conference,
                  {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10545},
  pages        = {108--127},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67471-1\_7},
  doi          = {10.1007/978-3-319-67471-1\_7},
  timestamp    = {Mon, 18 Sep 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cmsb/FagesGBP17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/cmsb/HarmerCLO17,
  author       = {Russ Harmer and
                  Yves{-}Stan Le Cornec and
                  S{\'{e}}bastien L{\'{e}}gar{\'{e}} and
                  Ievgeniia Oshurko},
  editor       = {J{\'{e}}r{\^{o}}me Feret and
                  Heinz Koeppl},
  title        = {Bio-Curation for Cellular Signalling: The {KAMI} Project},
  booktitle    = {Computational Methods in Systems Biology - 15th International Conference,
                  {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10545},
  pages        = {3--19},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67471-1\_1},
  doi          = {10.1007/978-3-319-67471-1\_1},
  timestamp    = {Mon, 18 Sep 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cmsb/HarmerCLO17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/cmsb/KlingerH17,
  author       = {Emmanuel Klinger and
                  Jan Hasenauer},
  editor       = {J{\'{e}}r{\^{o}}me Feret and
                  Heinz Koeppl},
  title        = {A Scheme for Adaptive Selection of Population Sizes in Approximate
                  Bayesian Computation - Sequential Monte Carlo},
  booktitle    = {Computational Methods in Systems Biology - 15th International Conference,
                  {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10545},
  pages        = {128--144},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67471-1\_8},
  doi          = {10.1007/978-3-319-67471-1\_8},
  timestamp    = {Mon, 18 Sep 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cmsb/KlingerH17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/cmsb/LiangWTRSM17,
  author       = {Kai{-}Wen Liang and
                  Qinsi Wang and
                  Cheryl Telmer and
                  Divyaa Ravichandran and
                  Peter Spirtes and
                  Natasa Miskov{-}Zivanov},
  editor       = {J{\'{e}}r{\^{o}}me Feret and
                  Heinz Koeppl},
  title        = {Methods to Expand Cell Signaling Models Using Automated Reading and
                  Model Checking},
  booktitle    = {Computational Methods in Systems Biology - 15th International Conference,
                  {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10545},
  pages        = {145--159},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67471-1\_9},
  doi          = {10.1007/978-3-319-67471-1\_9},
  timestamp    = {Mon, 18 Sep 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cmsb/LiangWTRSM17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/cmsb/LuckGWW17,
  author       = {Alexander L{\"{u}}ck and
                  Pascal Giehr and
                  J{\"{o}}rn Walter and
                  Verena Wolf},
  editor       = {J{\'{e}}r{\^{o}}me Feret and
                  Heinz Koeppl},
  title        = {A Stochastic Model for the Formation of Spatial Methylation Patterns},
  booktitle    = {Computational Methods in Systems Biology - 15th International Conference,
                  {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10545},
  pages        = {160--178},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67471-1\_10},
  doi          = {10.1007/978-3-319-67471-1\_10},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cmsb/LuckGWW17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/cmsb/MandonHP17,
  author       = {Hugues Mandon and
                  Stefan Haar and
                  Lo{\"{\i}}c Paulev{\'{e}}},
  editor       = {J{\'{e}}r{\^{o}}me Feret and
                  Heinz Koeppl},
  title        = {Temporal Reprogramming of Boolean Networks},
  booktitle    = {Computational Methods in Systems Biology - 15th International Conference,
                  {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10545},
  pages        = {179--195},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67471-1\_11},
  doi          = {10.1007/978-3-319-67471-1\_11},
  timestamp    = {Mon, 18 Sep 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cmsb/MandonHP17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/cmsb/MiraglioBCF17,
  author       = {Benjamin Miraglio and
                  Gilles Bernot and
                  Jean{-}Paul Comet and
                  Christine Risso{-}de Faverney},
  editor       = {J{\'{e}}r{\^{o}}me Feret and
                  Heinz Koeppl},
  title        = {Detecting Toxicity Pathways with a Formal Framework Based on Equilibrium
                  Changes},
  booktitle    = {Computational Methods in Systems Biology - 15th International Conference,
                  {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10545},
  pages        = {196--213},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67471-1\_12},
  doi          = {10.1007/978-3-319-67471-1\_12},
  timestamp    = {Mon, 18 Sep 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cmsb/MiraglioBCF17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/cmsb/PaolettiLSL17,
  author       = {Nicola Paoletti and
                  Kin Sum Liu and
                  Scott A. Smolka and
                  Shan Lin},
  editor       = {J{\'{e}}r{\^{o}}me Feret and
                  Heinz Koeppl},
  title        = {Data-Driven Robust Control for Type 1 Diabetes Under Meal and Exercise
                  Uncertainties},
  booktitle    = {Computational Methods in Systems Biology - 15th International Conference,
                  {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10545},
  pages        = {214--232},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67471-1\_13},
  doi          = {10.1007/978-3-319-67471-1\_13},
  timestamp    = {Wed, 10 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/cmsb/PaolettiLSL17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/cmsb/Pauleve17,
  author       = {Lo{\"{\i}}c Paulev{\'{e}}},
  editor       = {J{\'{e}}r{\^{o}}me Feret and
                  Heinz Koeppl},
  title        = {Pint: {A} Static Analyzer for Transient Dynamics of Qualitative Networks
                  with IPython Interface},
  booktitle    = {Computational Methods in Systems Biology - 15th International Conference,
                  {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10545},
  pages        = {309--316},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67471-1\_20},
  doi          = {10.1007/978-3-319-67471-1\_20},
  timestamp    = {Mon, 18 Sep 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cmsb/Pauleve17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/cmsb/SchwiegerS17,
  author       = {Robert Schwieger and
                  Heike Siebert},
  editor       = {J{\'{e}}r{\^{o}}me Feret and
                  Heinz Koeppl},
  title        = {Graph Representations of Monotonic Boolean Model Pools},
  booktitle    = {Computational Methods in Systems Biology - 15th International Conference,
                  {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10545},
  pages        = {233--248},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67471-1\_14},
  doi          = {10.1007/978-3-319-67471-1\_14},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/cmsb/SchwiegerS17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/cmsb/TalcottK17,
  author       = {Carolyn L. Talcott and
                  Merrill Knapp},
  editor       = {J{\'{e}}r{\^{o}}me Feret and
                  Heinz Koeppl},
  title        = {Explaining Response to Drugs Using Pathway Logic},
  booktitle    = {Computational Methods in Systems Biology - 15th International Conference,
                  {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10545},
  pages        = {249--264},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67471-1\_15},
  doi          = {10.1007/978-3-319-67471-1\_15},
  timestamp    = {Mon, 18 Sep 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cmsb/TalcottK17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/cmsb/ZhouRWT17,
  author       = {Jun Zhou and
                  R. Ramanathan and
                  Weng{-}Fai Wong and
                  P. S. Thiagarajan},
  editor       = {J{\'{e}}r{\^{o}}me Feret and
                  Heinz Koeppl},
  title        = {Automated Property Synthesis of ODEs Based Bio-pathways Models},
  booktitle    = {Computational Methods in Systems Biology - 15th International Conference,
                  {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10545},
  pages        = {265--282},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67471-1\_16},
  doi          = {10.1007/978-3-319-67471-1\_16},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cmsb/ZhouRWT17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@proceedings{DBLP:conf/cmsb/2017,
  editor       = {J{\'{e}}r{\^{o}}me Feret and
                  Heinz Koeppl},
  title        = {Computational Methods in Systems Biology - 15th International Conference,
                  {CMSB} 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10545},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67471-1},
  doi          = {10.1007/978-3-319-67471-1},
  isbn         = {978-3-319-67470-4},
  timestamp    = {Tue, 14 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cmsb/2017.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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