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@inproceedings{DBLP:conf/bionlp/ApostolovaT10,
  author       = {Emilia Apostolova and
                  Noriko Tomuro},
  editor       = {K. Bretonnel Cohen and
                  Dina Demner{-}Fushman and
                  Sophia Ananiadou and
                  John Pestian and
                  Jun'ichi Tsujii and
                  Bonnie L. Webber},
  title        = {Exploring Surface-Level Heuristics for Negation and Speculation Discovery
                  in Clinical Texts},
  booktitle    = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
                  BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
  pages        = {81--82},
  publisher    = {Association for Computational Linguistics},
  year         = {2010},
  url          = {https://aclanthology.org/W10-1910/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bionlp/ApostolovaT10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bionlp/BjorneGPTS10,
  author       = {Jari Bj{\"{o}}rne and
                  Filip Ginter and
                  Sampo Pyysalo and
                  Jun'ichi Tsujii and
                  Tapio Salakoski},
  editor       = {K. Bretonnel Cohen and
                  Dina Demner{-}Fushman and
                  Sophia Ananiadou and
                  John Pestian and
                  Jun'ichi Tsujii and
                  Bonnie L. Webber},
  title        = {Scaling up Biomedical Event Extraction to the Entire PubMed},
  booktitle    = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
                  BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
  pages        = {28--36},
  publisher    = {Association for Computational Linguistics},
  year         = {2010},
  url          = {https://aclanthology.org/W10-1904/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bionlp/BjorneGPTS10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bionlp/ChowdhuryL10,
  author       = {Md. Faisal Mahbub Chowdhury and
                  Alberto Lavelli},
  editor       = {K. Bretonnel Cohen and
                  Dina Demner{-}Fushman and
                  Sophia Ananiadou and
                  John Pestian and
                  Jun'ichi Tsujii and
                  Bonnie L. Webber},
  title        = {Disease Mention Recognition with Specific Features},
  booktitle    = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
                  BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
  pages        = {83--90},
  publisher    = {Association for Computational Linguistics},
  year         = {2010},
  url          = {https://aclanthology.org/W10-1911/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bionlp/ChowdhuryL10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bionlp/FrunzaI10,
  author       = {Oana Frunza and
                  Diana Inkpen},
  editor       = {K. Bretonnel Cohen and
                  Dina Demner{-}Fushman and
                  Sophia Ananiadou and
                  John Pestian and
                  Jun'ichi Tsujii and
                  Bonnie L. Webber},
  title        = {Extraction of Disease-Treatment Semantic Relations from Biomedical
                  Sentences},
  booktitle    = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
                  BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
  pages        = {91--98},
  publisher    = {Association for Computational Linguistics},
  year         = {2010},
  url          = {https://aclanthology.org/W10-1912/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bionlp/FrunzaI10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bionlp/GernerNB10,
  author       = {Martin Gerner and
                  Goran Nenadic and
                  Casey M. Bergman},
  editor       = {K. Bretonnel Cohen and
                  Dina Demner{-}Fushman and
                  Sophia Ananiadou and
                  John Pestian and
                  Jun'ichi Tsujii and
                  Bonnie L. Webber},
  title        = {An Exploration of Mining Gene Expression Mentions and Their Anatomical
                  Locations from Biomedical Text},
  booktitle    = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
                  BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
  pages        = {72--80},
  publisher    = {Association for Computational Linguistics},
  year         = {2010},
  url          = {https://aclanthology.org/W10-1909/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bionlp/GernerNB10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bionlp/GuoKLSSS10,
  author       = {Yufan Guo and
                  Anna Korhonen and
                  Maria Liakata and
                  Ilona Silins and
                  Lin Sun and
                  Ulla Stenius},
  editor       = {K. Bretonnel Cohen and
                  Dina Demner{-}Fushman and
                  Sophia Ananiadou and
                  John Pestian and
                  Jun'ichi Tsujii and
                  Bonnie L. Webber},
  title        = {Identifying the Information Structure of Scientific Abstracts: An
                  Investigation of Three Different Schemes},
  booktitle    = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
                  BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
  pages        = {99--107},
  publisher    = {Association for Computational Linguistics},
  year         = {2010},
  url          = {https://aclanthology.org/W10-1913/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bionlp/GuoKLSSS10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bionlp/HeimonenBS10,
  author       = {Juho Heimonen and
                  Jari Bj{\"{o}}rne and
                  Tapio Salakoski},
  editor       = {K. Bretonnel Cohen and
                  Dina Demner{-}Fushman and
                  Sophia Ananiadou and
                  John Pestian and
                  Jun'ichi Tsujii and
                  Bonnie L. Webber},
  title        = {Reconstruction of Semantic Relationships from Their Projections in
                  Biomolecular Domain},
  booktitle    = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
                  BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
  pages        = {108--116},
  publisher    = {Association for Computational Linguistics},
  year         = {2010},
  url          = {https://aclanthology.org/W10-1914/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bionlp/HeimonenBS10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bionlp/JhaE10,
  author       = {Mukund Jha and
                  Noemie Elhadad},
  editor       = {K. Bretonnel Cohen and
                  Dina Demner{-}Fushman and
                  Sophia Ananiadou and
                  John Pestian and
                  Jun'ichi Tsujii and
                  Bonnie L. Webber},
  title        = {Cancer Stage Prediction Based on Patient Online Discourse},
  booktitle    = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
                  BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
  pages        = {64--71},
  publisher    = {Association for Computational Linguistics},
  year         = {2010},
  url          = {https://aclanthology.org/W10-1908/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bionlp/JhaE10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bionlp/KilicogluFRMR10,
  author       = {Halil Kilicoglu and
                  Marcelo Fiszman and
                  Graciela Rosemblat and
                  Sean Marimpietri and
                  Thomas C. Rindflesch},
  editor       = {K. Bretonnel Cohen and
                  Dina Demner{-}Fushman and
                  Sophia Ananiadou and
                  John Pestian and
                  Jun'ichi Tsujii and
                  Bonnie L. Webber},
  title        = {Arguments of Nominals in Semantic Interpretation of Biomedical Text},
  booktitle    = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
                  BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
  pages        = {46--54},
  publisher    = {Association for Computational Linguistics},
  year         = {2010},
  url          = {https://aclanthology.org/W10-1906/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bionlp/KilicogluFRMR10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bionlp/LandeghemPOP10,
  author       = {Sofie Van Landeghem and
                  Sampo Pyysalo and
                  Tomoko Ohta and
                  Yves Van de Peer},
  editor       = {K. Bretonnel Cohen and
                  Dina Demner{-}Fushman and
                  Sophia Ananiadou and
                  John Pestian and
                  Jun'ichi Tsujii and
                  Bonnie L. Webber},
  title        = {Integration of Static Relations to Enhance Event Extraction from Text},
  booktitle    = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
                  BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
  pages        = {144--152},
  publisher    = {Association for Computational Linguistics},
  year         = {2010},
  url          = {https://aclanthology.org/W10-1921/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bionlp/LandeghemPOP10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bionlp/LeamanWSSYG10,
  author       = {Robert Leaman and
                  Laura Wojtulewicz and
                  Ryan Sullivan and
                  Annie Skariah and
                  Jian Yang and
                  Graciela Gonzalez},
  editor       = {K. Bretonnel Cohen and
                  Dina Demner{-}Fushman and
                  Sophia Ananiadou and
                  John Pestian and
                  Jun'ichi Tsujii and
                  Bonnie L. Webber},
  title        = {Towards Internet-Age Pharmacovigilance: Extracting Adverse Drug Reactions
                  from User Posts in Health-Related Social Networks},
  booktitle    = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
                  BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
  pages        = {117--125},
  publisher    = {Association for Computational Linguistics},
  year         = {2010},
  url          = {https://aclanthology.org/W10-1915/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bionlp/LeamanWSSYG10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bionlp/LiuHZ10,
  author       = {Jingchen Liu and
                  Minlie Huang and
                  Xiaoyan Zhu},
  editor       = {K. Bretonnel Cohen and
                  Dina Demner{-}Fushman and
                  Sophia Ananiadou and
                  John Pestian and
                  Jun'ichi Tsujii and
                  Bonnie L. Webber},
  title        = {Recognizing Biomedical Named Entities Using Skip-Chain Conditional
                  Random Fields},
  booktitle    = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
                  BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
  pages        = {10--18},
  publisher    = {Association for Computational Linguistics},
  year         = {2010},
  url          = {https://aclanthology.org/W10-1902/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bionlp/LiuHZ10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bionlp/MiwaPHT10,
  author       = {Makoto Miwa and
                  Sampo Pyysalo and
                  Tadayoshi Hara and
                  Jun'ichi Tsujii},
  editor       = {K. Bretonnel Cohen and
                  Dina Demner{-}Fushman and
                  Sophia Ananiadou and
                  John Pestian and
                  Jun'ichi Tsujii and
                  Bonnie L. Webber},
  title        = {A Comparative Study of Syntactic Parsers for Event Extraction},
  booktitle    = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
                  BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
  pages        = {37--45},
  publisher    = {Association for Computational Linguistics},
  year         = {2010},
  url          = {https://aclanthology.org/W10-1905/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bionlp/MiwaPHT10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bionlp/Morante10,
  author       = {Roser Morante},
  editor       = {K. Bretonnel Cohen and
                  Dina Demner{-}Fushman and
                  Sophia Ananiadou and
                  John Pestian and
                  Jun'ichi Tsujii and
                  Bonnie L. Webber},
  title        = {Semantic Role Labeling of Gene Regulation Events: Preliminary Results},
  booktitle    = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
                  BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
  pages        = {126--127},
  publisher    = {Association for Computational Linguistics},
  year         = {2010},
  url          = {https://aclanthology.org/W10-1916/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bionlp/Morante10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bionlp/NaderiW10,
  author       = {Nona Naderi and
                  Ren{\'{e}} Witte},
  editor       = {K. Bretonnel Cohen and
                  Dina Demner{-}Fushman and
                  Sophia Ananiadou and
                  John Pestian and
                  Jun'ichi Tsujii and
                  Bonnie L. Webber},
  title        = {Ontology-Based Extraction and Summarization of Protein Mutation Impact
                  Information},
  booktitle    = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
                  BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
  pages        = {128--129},
  publisher    = {Association for Computational Linguistics},
  year         = {2010},
  url          = {https://aclanthology.org/W10-1917/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bionlp/NaderiW10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bionlp/OhtaPMKT10,
  author       = {Tomoko Ohta and
                  Sampo Pyysalo and
                  Makoto Miwa and
                  Jin{-}Dong Kim and
                  Jun'ichi Tsujii},
  editor       = {K. Bretonnel Cohen and
                  Dina Demner{-}Fushman and
                  Sophia Ananiadou and
                  John Pestian and
                  Jun'ichi Tsujii and
                  Bonnie L. Webber},
  title        = {Event Extraction for Post-Translational Modifications},
  booktitle    = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
                  BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
  pages        = {19--27},
  publisher    = {Association for Computational Linguistics},
  year         = {2010},
  url          = {https://aclanthology.org/W10-1903/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bionlp/OhtaPMKT10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bionlp/ParkC10,
  author       = {Heekyong Park and
                  Jinwook Choi},
  editor       = {K. Bretonnel Cohen and
                  Dina Demner{-}Fushman and
                  Sophia Ananiadou and
                  John Pestian and
                  Jun'ichi Tsujii and
                  Bonnie L. Webber},
  title        = {Extracting Distinctive Features of Swine {(H1N1)} Flu through Data
                  Mining Clinical Documents},
  booktitle    = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
                  BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
  pages        = {130--131},
  publisher    = {Association for Computational Linguistics},
  year         = {2010},
  url          = {https://aclanthology.org/W10-1918/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bionlp/ParkC10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bionlp/PlazaSD10,
  author       = {Laura Plaza and
                  Mark Stevenson and
                  Alberto D{\'{\i}}az},
  editor       = {K. Bretonnel Cohen and
                  Dina Demner{-}Fushman and
                  Sophia Ananiadou and
                  John Pestian and
                  Jun'ichi Tsujii and
                  Bonnie L. Webber},
  title        = {Improving Summarization of Biomedical Documents Using Word Sense Disambiguation},
  booktitle    = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
                  BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
  pages        = {55--63},
  publisher    = {Association for Computational Linguistics},
  year         = {2010},
  url          = {https://aclanthology.org/W10-1907/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bionlp/PlazaSD10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bionlp/PyysaloOCSMSTA10,
  author       = {Sampo Pyysalo and
                  Tomoko Ohta and
                  Han{-}Cheol Cho and
                  Daniel E. Sullivan and
                  Chunhong Mao and
                  Bruno W. S. Sobral and
                  Jun'ichi Tsujii and
                  Sophia Ananiadou},
  editor       = {K. Bretonnel Cohen and
                  Dina Demner{-}Fushman and
                  Sophia Ananiadou and
                  John Pestian and
                  Jun'ichi Tsujii and
                  Bonnie L. Webber},
  title        = {Towards Event Extraction from Full Texts on Infectious Diseases},
  booktitle    = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
                  BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
  pages        = {132--140},
  publisher    = {Association for Computational Linguistics},
  year         = {2010},
  url          = {https://aclanthology.org/W10-1919/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bionlp/PyysaloOCSMSTA10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bionlp/StubbsH10,
  author       = {Amber Stubbs and
                  Benjamin Harshfield},
  editor       = {K. Bretonnel Cohen and
                  Dina Demner{-}Fushman and
                  Sophia Ananiadou and
                  John Pestian and
                  Jun'ichi Tsujii and
                  Bonnie L. Webber},
  title        = {Applying the {TARSQI} Toolkit to Augment Text Mining of EHRs},
  booktitle    = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
                  BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
  pages        = {141--143},
  publisher    = {Association for Computational Linguistics},
  year         = {2010},
  url          = {https://aclanthology.org/W10-1920/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bionlp/StubbsH10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bionlp/Vlachos10,
  author       = {Andreas Vlachos},
  editor       = {K. Bretonnel Cohen and
                  Dina Demner{-}Fushman and
                  Sophia Ananiadou and
                  John Pestian and
                  Jun'ichi Tsujii and
                  Bonnie L. Webber},
  title        = {Two Strong Baselines for the BioNLP 2009 Event Extraction Task},
  booktitle    = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
                  BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
  pages        = {1--9},
  publisher    = {Association for Computational Linguistics},
  year         = {2010},
  url          = {https://aclanthology.org/W10-1901/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bionlp/Vlachos10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@proceedings{DBLP:conf/bionlp/2010,
  editor       = {K. Bretonnel Cohen and
                  Dina Demner{-}Fushman and
                  Sophia Ananiadou and
                  John Pestian and
                  Jun'ichi Tsujii and
                  Bonnie L. Webber},
  title        = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
                  BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
  publisher    = {Association for Computational Linguistics},
  year         = {2010},
  url          = {https://aclanthology.org/volumes/W10-19/},
  isbn         = {978-1-932432-73-2},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bionlp/2010.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

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