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@article{DBLP:journals/corr/abs-2401-01817,
author = {Takuya Kiyokawa and
Kensuke Harada and
Weiwei Wan and
Tomoki Ishikura and
Naoya Miyaji and
Genichiro Matsuda},
title = {Many-Objective-Optimized Semi-Automated Robotic Disassembly Sequences},
journal = {CoRR},
volume = {abs/2401.01817},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2401.01817},
doi = {10.48550/ARXIV.2401.01817},
eprinttype = {arXiv},
eprint = {2401.01817},
timestamp = {Mon, 15 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2401-01817.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/csysl/UblRH23,
author = {Matthew Ubl and
Benjamin D. Robinson and
Matthew T. Hale},
title = {Anomaly Search Over Many Sequences With Switching Costs},
journal = {{IEEE} Control. Syst. Lett.},
volume = {7},
pages = {3006--3011},
year = {2023},
url = {https://doi.org/10.1109/LCSYS.2023.3290212},
doi = {10.1109/LCSYS.2023.3290212},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/csysl/UblRH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/WedellSW23,
author = {Eleanor Wedell and
Chengze Shen and
Tandy J. Warnow},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {{BATCH-SCAMPP:} Scaling Phylogenetic Placement Methods to Place Many
Sequences (Abstract)},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {3:1--3:2},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.3},
doi = {10.4230/LIPICS.WABI.2023.3},
timestamp = {Tue, 29 Aug 2023 16:25:19 +0200},
biburl = {https://dblp.org/rec/conf/wabi/WedellSW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2303-09647,
author = {Matthew Ubl and
Benjamin D. Robinson and
Matthew T. Hale},
title = {Anomaly Search Over Many Sequences With Switching Costs},
journal = {CoRR},
volume = {abs/2303.09647},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2303.09647},
doi = {10.48550/ARXIV.2303.09647},
eprinttype = {arXiv},
eprint = {2303.09647},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2303-09647.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/msr/JesseD22,
author = {Kevin Jesse and
Premkumar T. Devanbu},
title = {ManyTypes4TypeScript: {A} Comprehensive TypeScript Dataset for Sequence-Based
Type Inference},
booktitle = {19th {IEEE/ACM} International Conference on Mining Software Repositories,
{MSR} 2022, Pittsburgh, PA, USA, May 23-24, 2022},
pages = {294--298},
publisher = {{ACM}},
year = {2022},
url = {https://doi.org/10.1145/3524842.3528507},
doi = {10.1145/3524842.3528507},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/msr/JesseD22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isci/DuranteFI21,
author = {Fabrizio Durante and
Juan Fern{\'{a}}ndez{-}S{\'{a}}nchez and
C. Ignazzi},
title = {Operators invariant under finitely many input changes with applications
to aggregation of sequences},
journal = {Inf. Sci.},
volume = {560},
pages = {271--282},
year = {2021},
url = {https://doi.org/10.1016/j.ins.2021.01.040},
doi = {10.1016/J.INS.2021.01.040},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/isci/DuranteFI21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/taslp/LiuCWWLM21,
author = {Songxiang Liu and
Yuewen Cao and
Disong Wang and
Xixin Wu and
Xunying Liu and
Helen Meng},
title = {Any-to-Many Voice Conversion With Location-Relative Sequence-to-Sequence
Modeling},
journal = {{IEEE} {ACM} Trans. Audio Speech Lang. Process.},
volume = {29},
pages = {1717--1728},
year = {2021},
url = {https://doi.org/10.1109/TASLP.2021.3076867},
doi = {10.1109/TASLP.2021.3076867},
timestamp = {Tue, 15 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/taslp/LiuCWWLM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/access/BanoBY20,
author = {Shah Bano and
Maryam Bashir and
Irfan Younas},
title = {A Many-Objective Memetic Generalized Differential Evolution Algorithm
for {DNA} Sequence Design},
journal = {{IEEE} Access},
volume = {8},
pages = {222684--222699},
year = {2020},
url = {https://doi.org/10.1109/ACCESS.2020.3040752},
doi = {10.1109/ACCESS.2020.3040752},
timestamp = {Sat, 09 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/access/BanoBY20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/CostaST20,
author = {Evaldo Bezerra Costa and
Gabriel Pereira Silva and
Marcello Goulart Teixeira},
title = {An Approach to Parallel Algorithms for Long {DNA} Sequences Alignment
on Manycore Architecture},
journal = {J. Comput. Biol.},
volume = {27},
number = {8},
pages = {1248--1252},
year = {2020},
url = {https://doi.org/10.1089/cmb.2019.0362},
doi = {10.1089/CMB.2019.0362},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/CostaST20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jpdc/KarahodaEKTY20,
author = {Serta{\c{c}} Karahoda and
Osman Tufan Erenay and
Kamer Kaya and
Uraz Cengiz T{\"{u}}rker and
H{\"{u}}sn{\"{u}} Yenig{\"{u}}n},
title = {Multicore and manycore parallelization of cheap synchronizing sequence
heuristics},
journal = {J. Parallel Distributed Comput.},
volume = {140},
pages = {13--24},
year = {2020},
url = {https://doi.org/10.1016/j.jpdc.2020.02.009},
doi = {10.1016/J.JPDC.2020.02.009},
timestamp = {Mon, 04 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jpdc/KarahodaEKTY20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/XuCXZWYL20,
author = {Xiaoming Xu and
Yuandong Chan and
Kai Xu and
Jikai Zhang and
Xiaoning Wang and
Zekun Yin and
Weiguo Liu},
editor = {Taesung Park and
Young{-}Rae Cho and
Xiaohua Hu and
Illhoi Yoo and
Hyun Goo Woo and
Jianxin Wang and
Julio C. Facelli and
Seungyoon Nam and
Mingon Kang},
title = {SLPal: Accelerating Long Sequence Alignment on Many-Core and Multi-Core
Architectures},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2020, Virtual Event, South Korea, December 16-19, 2020},
pages = {2242--2249},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/BIBM49941.2020.9313429},
doi = {10.1109/BIBM49941.2020.9313429},
timestamp = {Fri, 09 Apr 2021 17:11:13 +0200},
biburl = {https://dblp.org/rec/conf/bibm/XuCXZWYL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/SelvitopiEGPAB20,
author = {Oguz Selvitopi and
Saliya Ekanayake and
Giulia Guidi and
Georgios A. Pavlopoulos and
Ariful Azad and
Aydin Bulu{\c{c}}},
editor = {Christine Cuicchi and
Irene Qualters and
William T. Kramer},
title = {Distributed many-to-many protein sequence alignment using sparse matrices},
booktitle = {Proceedings of the International Conference for High Performance Computing,
Networking, Storage and Analysis, {SC} 2020, Virtual Event / Atlanta,
Georgia, USA, November 9-19, 2020},
pages = {75},
publisher = {{IEEE/ACM}},
year = {2020},
url = {https://doi.org/10.1109/SC41405.2020.00079},
doi = {10.1109/SC41405.2020.00079},
timestamp = {Wed, 04 May 2022 13:02:27 +0200},
biburl = {https://dblp.org/rec/conf/sc/SelvitopiEGPAB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2009-02725,
author = {Songxiang Liu and
Yuewen Cao and
Disong Wang and
Xixin Wu and
Xunying Liu and
Helen Meng},
title = {Any-to-Many Voice Conversion with Location-Relative Sequence-to-Sequence
Modeling},
journal = {CoRR},
volume = {abs/2009.02725},
year = {2020},
url = {https://arxiv.org/abs/2009.02725},
eprinttype = {arXiv},
eprint = {2009.02725},
timestamp = {Fri, 18 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2009-02725.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2009-14467,
author = {Oguz Selvitopi and
Saliya Ekanayake and
Giulia Guidi and
Georgios A. Pavlopoulos and
Ariful Azad and
Aydin Bulu{\c{c}}},
title = {Distributed Many-to-Many Protein Sequence Alignment using Sparse Matrices},
journal = {CoRR},
volume = {abs/2009.14467},
year = {2020},
url = {https://arxiv.org/abs/2009.14467},
eprinttype = {arXiv},
eprint = {2009.14467},
timestamp = {Wed, 07 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2009-14467.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangLCSSL19,
author = {Jikai Zhang and
Haidong Lan and
Yuandong Chan and
Yuan Shang and
Bertil Schmidt and
Weiguo Liu},
title = {{BGSA:} a bit-parallel global sequence alignment toolkit for multi-core
and many-core architectures},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2306--2308},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty930},
doi = {10.1093/BIOINFORMATICS/BTY930},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangLCSSL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tii/PistolesiL19,
author = {Francesco Pistolesi and
Beatrice Lazzerini},
title = {TeMA: {A} Tensorial Memetic Algorithm for Many-Objective Parallel
Disassembly Sequence Planning in Product Refurbishment},
journal = {{IEEE} Trans. Ind. Informatics},
volume = {15},
number = {6},
pages = {3743--3753},
year = {2019},
url = {https://doi.org/10.1109/TII.2019.2904631},
doi = {10.1109/TII.2019.2904631},
timestamp = {Thu, 21 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tii/PistolesiL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cgo/TianQ0LR19,
author = {Ruiqin Tian and
Junqiao Qiu and
Zhijia Zhao and
Xu Liu and
Bin Ren},
editor = {Mahmut Taylan Kandemir and
Alexandra Jimborean and
Tipp Moseley},
title = {Transforming Query Sequences for High-Throughput {B+} Tree Processing
on Many-Core Processors},
booktitle = {{IEEE/ACM} International Symposium on Code Generation and Optimization,
{CGO} 2019, Washington, DC, USA, February 16-20, 2019},
pages = {96--108},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/CGO.2019.8661166},
doi = {10.1109/CGO.2019.8661166},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cgo/TianQ0LR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijflis/HwangK18,
author = {Sangheum Hwang and
Dohyun Kim},
title = {A Scalable Feature Based Clustering Algorithm for Sequences with Many
Distinct Items},
journal = {Int. J. Fuzzy Log. Intell. Syst.},
volume = {18},
number = {4},
pages = {316--325},
year = {2018},
url = {https://doi.org/10.5391/ijfis.2018.18.4.316},
doi = {10.5391/IJFIS.2018.18.4.316},
timestamp = {Tue, 24 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijflis/HwangK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cases/UrgesePBMA18,
author = {Gianvito Urgese and
Luca Peres and
Francesco Barchi and
Enrico Macii and
Andrea Acquaviva},
editor = {Tulika Mitra and
Akash Kumar},
title = {Multiple alignment of packet sequences for efficient communication
in a many-core neuromorphic system: work-in-progress},
booktitle = {Proceedings of the International Conference on Compilers, Architecture
and Synthesis for Embedded Systems, {CASES} 2018, Torino, Italy, September
30 - October 05, 2018},
pages = {3:1--3:2},
publisher = {{ACM}},
year = {2018},
url = {http://dl.acm.org/citation.cfm?id=3283555},
timestamp = {Tue, 06 Nov 2018 14:46:50 +0100},
biburl = {https://dblp.org/rec/conf/cases/UrgesePBMA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/BhattacharyyaSF18,
author = {Apratim Bhattacharyya and
Bernt Schiele and
Mario Fritz},
title = {Accurate and Diverse Sampling of Sequences Based on a "Best of Many"
Sample Objective},
booktitle = {2018 {IEEE} Conference on Computer Vision and Pattern Recognition,
{CVPR} 2018, Salt Lake City, UT, USA, June 18-22, 2018},
pages = {8485--8493},
publisher = {Computer Vision Foundation / {IEEE} Computer Society},
year = {2018},
url = {http://openaccess.thecvf.com/content\_cvpr\_2018/html/Bhattacharyya\_Accurate\_and\_Diverse\_CVPR\_2018\_paper.html},
doi = {10.1109/CVPR.2018.00885},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cvpr/BhattacharyyaSF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1806-07772,
author = {Apratim Bhattacharyya and
Bernt Schiele and
Mario Fritz},
title = {Accurate and Diverse Sampling of Sequences based on a "Best of Many"
Sample Objective},
journal = {CoRR},
volume = {abs/1806.07772},
year = {2018},
url = {http://arxiv.org/abs/1806.07772},
eprinttype = {arXiv},
eprint = {1806.07772},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1806-07772.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KavakLNAGAH17,
author = {Pinar Kavak and
Yen{-}Yi Lin and
Ibrahim Numanagic and
Hossein Asghari and
Tunga G{\"{u}}ng{\"{o}}r and
Can Alkan and
Faraz Hach},
title = {Discovery and genotyping of novel sequence insertions in many sequenced
individuals},
journal = {Bioinform.},
volume = {33},
number = {14},
pages = {i161--i169},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx254},
doi = {10.1093/BIOINFORMATICS/BTX254},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KavakLNAGAH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijpp/LiuHPWJW17,
author = {Pei Liu and
Ahmed Hemani and
Kolin Paul and
Christian Weis and
Matthias Jung and
Norbert Wehn},
title = {3D-Stacked Many-Core Architecture for Biological Sequence Analysis
Problems},
journal = {Int. J. Parallel Program.},
volume = {45},
number = {6},
pages = {1420--1460},
year = {2017},
url = {https://doi.org/10.1007/s10766-017-0495-0},
doi = {10.1007/S10766-017-0495-0},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijpp/LiuHPWJW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jirs/ManyamRCG17,
author = {Satyanarayana G. Manyam and
Sivakumar Rathinam and
David W. Casbeer and
Eloy Garc{\'{\i}}a},
title = {Tightly Bounding the Shortest Dubins Paths Through a Sequence of Points},
journal = {J. Intell. Robotic Syst.},
volume = {88},
number = {2-4},
pages = {495--511},
year = {2017},
url = {https://doi.org/10.1007/s10846-016-0459-4},
doi = {10.1007/S10846-016-0459-4},
timestamp = {Tue, 20 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jirs/ManyamRCG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/Krebber17,
author = {Manuel Krebber},
title = {Non-linear Associative-Commutative Many-to-One Pattern Matching with
Sequence Variables},
journal = {CoRR},
volume = {abs/1705.00907},
year = {2017},
url = {http://arxiv.org/abs/1705.00907},
eprinttype = {arXiv},
eprint = {1705.00907},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/Krebber17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Perez-Rodriguez16,
author = {Javier P{\'{e}}rez{-}Rodr{\'{\i}}guez and
Nicol{\'{a}}s Garc{\'{\i}}a{-}Pedrajas},
title = {Stepwise approach for combining many sources of evidence for site-recognition
in genomic sequences},
journal = {{BMC} Bioinform.},
volume = {17},
pages = {117},
year = {2016},
url = {https://doi.org/10.1186/s12859-016-0968-y},
doi = {10.1186/S12859-016-0968-Y},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Perez-Rodriguez16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jalc/Eger16,
author = {Steffen Eger},
title = {On the Number of Many-to-Many Alignments of Multiple Sequences},
journal = {J. Autom. Lang. Comb.},
volume = {20},
number = {1},
pages = {53--65},
year = {2016},
url = {https://doi.org/10.25596/jalc-2015-053},
doi = {10.25596/JALC-2015-053},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jalc/Eger16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/Hou0F16,
author = {Kaixi Hou and
Hao Wang and
Wu{-}chun Feng},
title = {AAlign: {A} {SIMD} Framework for Pairwise Sequence Alignment on x86-Based
Multi-and Many-Core Processors},
booktitle = {2016 {IEEE} International Parallel and Distributed Processing Symposium,
{IPDPS} 2016, Chicago, IL, USA, May 23-27, 2016},
pages = {780--789},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/IPDPS.2016.115},
doi = {10.1109/IPDPS.2016.115},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/Hou0F16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gc/MohamadRT15,
author = {Mustafa Mohamad and
David Rappaport and
Godfried Toussaint},
title = {Minimum Many-to-Many Matchings for Computing the Distance Between
Two Sequences},
journal = {Graphs Comb.},
volume = {31},
number = {5},
pages = {1637--1648},
year = {2015},
url = {https://doi.org/10.1007/s00373-014-1467-4},
doi = {10.1007/S00373-014-1467-4},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gc/MohamadRT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/scfbm/Zhou15,
author = {Carol Zhou},
title = {CombAlign: a code for generating a one-to-many sequence alignment
from a set of pairwise structure-based sequence alignments},
journal = {Source Code Biol. Medicine},
volume = {10},
pages = {9},
year = {2015},
url = {https://doi.org/10.1186/s13029-015-0039-1},
doi = {10.1186/S13029-015-0039-1},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/scfbm/Zhou15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/Eger15,
author = {Steffen Eger},
title = {Multiple Many-to-Many Sequence Alignment for Combining String-Valued
Variables: {A} {G2P} Experiment},
booktitle = {Proceedings of the 53rd Annual Meeting of the Association for Computational
Linguistics and the 7th International Joint Conference on Natural
Language Processing of the Asian Federation of Natural Language Processing,
{ACL} 2015, July 26-31, 2015, Beijing, China, Volume 1: Long Papers},
pages = {909--919},
publisher = {The Association for Computer Linguistics},
year = {2015},
url = {https://doi.org/10.3115/v1/p15-1088},
doi = {10.3115/V1/P15-1088},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl/Eger15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/ShihRR15,
author = {Min{-}Chi Shih and
Renuka Shenoy and
Kenneth Rose},
title = {2D hidden Markov model with spatially adaptive state-space for tracing
many cells in image sequence},
booktitle = {12th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2015, Brooklyn, NY, USA, April 16-19, 2015},
pages = {1452--1456},
publisher = {{IEEE}},
year = {2015},
url = {https://doi.org/10.1109/ISBI.2015.7164150},
doi = {10.1109/ISBI.2015.7164150},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/ShihRR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@inproceedings{DBLP:conf/ppig/Winder15,
author = {Russel Winder},
editor = {Melanie Coles and
Gail Ollis},
title = {Tales from the Workshops: {A} sequence of vignettes, episodes, observations,
and reflections on many years of trying to teach people programming},
booktitle = {Proceedings of the 26th Annual Workshop of the Psychology of Programming
Interest Group, {PPIG} 2015, Bournemouth, UK, July 15-17, 2015},
pages = {13},
publisher = {Psychology of Programming Interest Group},
year = {2015},
url = {http://ppig.org/library/paper/tales-workshops-sequence-vignettes-episodes-observations-and-reflections-many-years},
timestamp = {Mon, 16 May 2022 15:41:50 +0200},
biburl = {https://dblp.org/rec/conf/ppig/Winder15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/samos/LiuHP15,
author = {Pei Liu and
Ahmed Hemani and
Kolin Paul},
editor = {Dimitrios Soudris and
Luigi Carro},
title = {3D-stacked many-core architecture for biological sequence analysis
problems},
booktitle = {2015 International Conference on Embedded Computer Systems: Architectures,
Modeling, and Simulation, {SAMOS} 2015, Samos, Greece, July 19-23,
2015},
pages = {211--220},
publisher = {{IEEE}},
year = {2015},
url = {https://doi.org/10.1109/SAMOS.2015.7363678},
doi = {10.1109/SAMOS.2015.7363678},
timestamp = {Wed, 16 Oct 2019 14:14:52 +0200},
biburl = {https://dblp.org/rec/conf/samos/LiuHP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/corr/Eger15,
author = {Steffen Eger},
title = {On the Number of Many-to-Many Alignments of {N} Sequences},
journal = {CoRR},
volume = {abs/1511.00622},
year = {2015},
url = {http://arxiv.org/abs/1511.00622},
eprinttype = {arXiv},
eprint = {1511.00622},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/Eger15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/HuangDYLZG14,
author = {He Huang and
Yan Dong and
Zhi{-}Liang Yang and
Hao Luo and
Xi Zhang and
Feng Gao},
title = {Complete Sequence of pABTJ2, {A} Plasmid from Acinetobacter baumannii
MDR-TJ, Carrying Many Phage-like Elements},
journal = {Genom. Proteom. Bioinform.},
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pages = {172--177},
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url = {https://doi.org/10.1016/j.gpb.2014.05.001},
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timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/HuangDYLZG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijbc/Simpson14,
author = {David J. W. Simpson},
title = {Sequences of Periodic Solutions and Infinitely Many Coexisting Attractors
in the Border-Collision Normal Form},
journal = {Int. J. Bifurc. Chaos},
volume = {24},
number = {6},
year = {2014},
url = {https://doi.org/10.1142/S0218127414300183},
doi = {10.1142/S0218127414300183},
timestamp = {Wed, 27 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijbc/Simpson14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcphy/EkebergHA14,
author = {Magnus Ekeberg and
Tuomo Hartonen and
Erik Aurell},
title = {Fast pseudolikelihood maximization for direct-coupling analysis of
protein structure from many homologous amino-acid sequences},
journal = {J. Comput. Phys.},
volume = {276},
pages = {341--356},
year = {2014},
url = {https://doi.org/10.1016/j.jcp.2014.07.024},
doi = {10.1016/J.JCP.2014.07.024},
timestamp = {Wed, 19 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcphy/EkebergHA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmm/AfonsoNM14,
author = {Manya V. Afonso and
Jacinto C. Nascimento and
Jorge S. Marques},
title = {Automatic Estimation of Multiple Motion Fields From Video Sequences
Using a Region Matching Based Approach},
journal = {{IEEE} Trans. Multim.},
volume = {16},
number = {1},
pages = {1--14},
year = {2014},
url = {https://doi.org/10.1109/TMM.2013.2281023},
doi = {10.1109/TMM.2013.2281023},
timestamp = {Thu, 01 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmm/AfonsoNM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/hal/Tran12,
author = {Tuan Tu Tran},
title = {Bioinformatics Sequence Comparisons on Manycore Processors. (Comparaisons
de s{\'{e}}quences biologiques sur architecture massivement multi-c{\oe}urs)},
school = {Lille University of Science and Technology, France},
year = {2012},
url = {https://tel.archives-ouvertes.fr/tel-00832663},
timestamp = {Tue, 21 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/hal/Tran12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pc/DiazEHCDG11,
author = {David D{\'{\i}}az and
Francisco Jos{\'{e}} Esteban and
Pilar Hern{\'{a}}ndez and
Juan Antonio Caballero and
Gabriel Dorado and
Sergio G{\'{a}}lvez},
title = {Parallelizing and optimizing a bioinformatics pairwise sequence alignment
algorithm for many-core architecture},
journal = {Parallel Comput.},
volume = {37},
number = {4-5},
pages = {244--259},
year = {2011},
url = {https://doi.org/10.1016/j.parco.2011.03.003},
doi = {10.1016/J.PARCO.2011.03.003},
timestamp = {Sat, 22 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/pc/DiazEHCDG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sosym/MicskeiW11,
author = {Zolt{\'{a}}n Micskei and
H{\'{e}}l{\`{e}}ne Waeselynck},
title = {The many meanings of {UML} 2 Sequence Diagrams: a survey},
journal = {Softw. Syst. Model.},
volume = {10},
number = {4},
pages = {489--514},
year = {2011},
url = {https://doi.org/10.1007/s10270-010-0157-9},
doi = {10.1007/S10270-010-0157-9},
timestamp = {Fri, 18 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sosym/MicskeiW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@inproceedings{DBLP:conf/cccg/RappaportTM11,
author = {David Rappaport and
Godfried T. Toussaint and
Mustafa Mohamad},
title = {Minimum Many to Many Matchings for Computing the Distance Between
Two Sequences},
booktitle = {Proceedings of the 23rd Annual Canadian Conference on Computational
Geometry, Toronto, Ontario, Canada, August 10-12, 2011},
year = {2011},
url = {http://www.cccg.ca/proceedings/2011/papers/paper29.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cccg/RappaportTM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GalvezDHECD10,
author = {Sergio G{\'{a}}lvez and
David D{\'{\i}}az and
Pilar Hern{\'{a}}ndez and
Francisco Jos{\'{e}} Esteban and
Juan Antonio Caballero and
Gabriel Dorado},
title = {Next-generation bioinformatics: using many-core processor architecture
to develop a web service for sequence alignment},
journal = {Bioinform.},
volume = {26},
number = {5},
pages = {683--686},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq017},
doi = {10.1093/BIOINFORMATICS/BTQ017},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GalvezDHECD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@inproceedings{DBLP:conf/mse/TtofisKTM09,
author = {Christos Ttofis and
Christos Kyrkou and
Theocharis Theocharides and
Maria K. Michael},
title = {FPGA-based NoC-driven sequence of lab assignments for manycore systems},
booktitle = {{IEEE} International Conference on Microelectronic Systems Education,
{MSE} '09, San Francisco, CA, USA, July 25-27, 2009},
pages = {5--8},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/MSE.2009.5270845},
doi = {10.1109/MSE.2009.5270845},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/mse/TtofisKTM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@inproceedings{DBLP:conf/kes/GrecoT08,
author = {Gianluigi Greco and
Giorgio Terracina},
editor = {Ignac Lovrek and
Robert J. Howlett and
Lakhmi C. Jain},
title = {Measuring Sequence Similarity Trough Many-to-Many Frequent Correlations},
booktitle = {Knowledge-Based Intelligent Information and Engineering Systems, 12th
International Conference, {KES} 2008, Zagreb, Croatia, September 3-5,
2008, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {5177},
pages = {484--492},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-85563-7\_62},
doi = {10.1007/978-3-540-85563-7\_62},
timestamp = {Tue, 14 May 2019 10:00:51 +0200},
biburl = {https://dblp.org/rec/conf/kes/GrecoT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@inproceedings{DBLP:conf/pdcat/YeNLF08,
author = {Xiaochun Ye and
Van Hoa Nguyen and
Dominique Lavenier and
Dongrui Fan},
title = {Efficient Parallelization of a Protein Sequence Comparison Algorithm
on Manycore Architecture},
booktitle = {Ninth International Conference on Parallel and Distributed Computing,
Applications and Technologies, {PDCAT} 2008, Dunedin, Otago, New Zealand,
1-4 December 2008},
pages = {167--170},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/PDCAT.2008.28},
doi = {10.1109/PDCAT.2008.28},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/pdcat/YeNLF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bmcbi/ShihLPW07,
author = {Arthur Chun{-}Chieh Shih and
D. T. Lee and
Chin{-}Lin Peng and
Yu{-}Wei Wu},
title = {\emph{Phylo-mLogo}: an interactive and hierarchical multiple-logo
visualization tool for alignment of many sequences},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-63},
doi = {10.1186/1471-2105-8-63},
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biburl = {https://dblp.org/rec/journals/bmcbi/ShihLPW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@inproceedings{DBLP:conf/bibe/ZhangK07,
author = {Xu Zhang and
Tamer Kahveci},
title = {{QOMA2:} Optimizing the alignment of many sequences},
booktitle = {Proceedings of the 7th {IEEE} International Conference on Bioinformatics
and Bioengineering, {BIBE} 2007, October 14-17, 2007, Harvard Medical
School, Boston, MA, {USA}},
pages = {780--787},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/BIBE.2007.4375649},
doi = {10.1109/BIBE.2007.4375649},
timestamp = {Wed, 16 Oct 2019 14:14:56 +0200},
biburl = {https://dblp.org/rec/conf/bibe/ZhangK07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Serafim Batzoglou},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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@inproceedings{DBLP:conf/dbsec/AcarM04,
author = {Aybar C. Acar and
Amihai Motro},
editor = {Csilla Farkas and
Pierangela Samarati},
title = {Why Is this User Asking so Many Questions? Explaining Sequences of
Queries},
booktitle = {Research Directions in Data and Applications Security XVIII, {IFIP}
{TC11/WG} 11.3 Eighteenth Annual Conference on Data and Applications
Security, July 25-28, 2004, Sitges, Catalonia, Spain},
series = {{IFIP}},
volume = {144},
pages = {159--176},
publisher = {Kluwer/Springer},
year = {2004},
url = {https://doi.org/10.1007/1-4020-8128-6\_11},
doi = {10.1007/1-4020-8128-6\_11},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/dbsec/AcarM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@inproceedings{DBLP:conf/isaac/JaromczykL04,
author = {Jerzy W. Jaromczyk and
Zbigniew Lonc},
editor = {Rudolf Fleischer and
Gerhard Trippen},
title = {Sequences of Radius k: How to Fetch Many Huge Objects into Small Memory
for Pairwise Computations},
booktitle = {Algorithms and Computation, 15th International Symposium, {ISAAC}
2004, Hong Kong, China, December 20-22, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3341},
pages = {594--605},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30551-4\_52},
doi = {10.1007/978-3-540-30551-4\_52},
timestamp = {Tue, 14 May 2019 10:00:50 +0200},
biburl = {https://dblp.org/rec/conf/isaac/JaromczykL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/combinatorics/KucherovOR03,
author = {Gregory Kucherov and
Pascal Ochem and
Micha{\"{e}}l Rao},
title = {How Many Square Occurrences Must a Binary Sequence Contain?},
journal = {Electron. J. Comb.},
volume = {10},
year = {2003},
url = {https://doi.org/10.37236/1705},
doi = {10.37236/1705},
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biburl = {https://dblp.org/rec/journals/combinatorics/KucherovOR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/jcss/LiMW02,
author = {Ming Li and
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title = {Finding Similar Regions in Many Sequences},
journal = {J. Comput. Syst. Sci.},
volume = {65},
number = {1},
pages = {73--96},
year = {2002},
url = {https://doi.org/10.1006/jcss.2002.1823},
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timestamp = {Mon, 13 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcss/LiMW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Peter Bladon},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bioinformatics/Gotoh95,
author = {Osamu Gotoh},
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biburl = {https://dblp.org/rec/journals/bioinformatics/Gotoh95.bib},
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author = {Aviezri S. Fraenkel and
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bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bioinformatics/Roytberg92,
author = {Mikhail A. Roytberg},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/nar/KrishnanKJ86,
author = {G. Krishnan and
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title = {{DNA} sequence analysis: a procedure to find homologies among many
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author = {Cary Queen and
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title = {Improvements to a program for {DNA} analysis: a procedure to find
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biburl = {https://dblp.org/rec/journals/nar/QueenWK82.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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