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@article{DBLP:journals/algorithms/TurkiRT23,
  author       = {Turki Turki and
                  Sanjiban Sekhar Roy and
                  Y{-}h. Taguchi},
  title        = {Optimized Tensor Decomposition and Principal Component Analysis Outperforming
                  State-of-the-Art Methods When Analyzing Histone Modification Chromatin
                  Immunoprecipitation Profiles},
  journal      = {Algorithms},
  volume       = {16},
  number       = {9},
  pages        = {401},
  year         = {2023},
  url          = {https://doi.org/10.3390/a16090401},
  doi          = {10.3390/A16090401},
  timestamp    = {Wed, 24 Jan 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/algorithms/TurkiRT23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/DeckerGRbCKCP22,
  author       = {Katherine Decker and
                  Ye Gao and
                  Kevin Rychel and
                  Tahani Al bulushi and
                  Siddharth M. Chauhan and
                  Donghyuk Kim and
                  Byung{-}Kwan Cho and
                  Bernhard O. Palsson},
  title        = {proChIPdb: a chromatin immunoprecipitation database for prokaryotic
                  organisms},
  journal      = {Nucleic Acids Res.},
  volume       = {50},
  number       = {{D1}},
  pages        = {1077--1090},
  year         = {2022},
  url          = {https://doi.org/10.1093/nar/gkab1043},
  doi          = {10.1093/NAR/GKAB1043},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/DeckerGRbCKCP22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/KurtenbachRH19,
  author       = {Stefan Kurtenbach and
                  Rohit Reddy and
                  J. William Harbour},
  title        = {ChIPprimersDB: a public repository of verified qPCR primers for chromatin
                  immunoprecipitation (ChIP)},
  journal      = {Nucleic Acids Res.},
  volume       = {47},
  number       = {Database-Issue},
  pages        = {D46--D49},
  year         = {2019},
  url          = {https://doi.org/10.1093/nar/gky813},
  doi          = {10.1093/NAR/GKY813},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/KurtenbachRH19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/MainaHMGSRLR14,
  author       = {Ciira Wa Maina and
                  Antti Honkela and
                  Filomena Matarese and
                  Korbinian Grote and
                  Hendrik G. Stunnenberg and
                  George Reid and
                  Neil D. Lawrence and
                  Magnus Rattray},
  title        = {Inference of {RNA} Polymerase {II} Transcription Dynamics from Chromatin
                  Immunoprecipitation Time Course Data},
  journal      = {PLoS Comput. Biol.},
  volume       = {10},
  number       = {5},
  year         = {2014},
  url          = {https://doi.org/10.1371/journal.pcbi.1003598},
  doi          = {10.1371/JOURNAL.PCBI.1003598},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/MainaHMGSRLR14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ejbsb/ZhaoSD08,
  author       = {Wentao Zhao and
                  Erchin Serpedin and
                  Edward R. Dougherty},
  title        = {Recovering Genetic Regulatory Networks from Chromatin Immunoprecipitation
                  and Steady-State Microarray Data},
  journal      = {{EURASIP} J. Bioinform. Syst. Biol.},
  volume       = {2008},
  year         = {2008},
  url          = {https://doi.org/10.1155/2008/248747},
  doi          = {10.1155/2008/248747},
  timestamp    = {Thu, 18 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ejbsb/ZhaoSD08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/iccS/VegaRS08,
  author       = {Vinsensius B. Vega and
                  Yijun Ruan and
                  Wing{-}Kin Sung},
  editor       = {Marian Bubak and
                  G. Dick van Albada and
                  Jack J. Dongarra and
                  Peter M. A. Sloot},
  title        = {A Streamlined and Generalized Analysis of Chromatin ImmunoPrecipitation
                  Paired-End diTag Data},
  booktitle    = {Computational Science - {ICCS} 2008, 8th International Conference,
                  Krak{\'{o}}w, Poland, June 23-25, 2008, Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {5103},
  pages        = {130--139},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-69389-5\_16},
  doi          = {10.1007/978-3-540-69389-5\_16},
  timestamp    = {Fri, 27 Dec 2019 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/iccS/VegaRS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/MacIsaacGNOSGYF06,
  author       = {Kenzie D. MacIsaac and
                  D. Benjamin Gordon and
                  Lena Nekludova and
                  Duncan T. Odom and
                  Joerg Schreiber and
                  David K. Gifford and
                  Richard A. Young and
                  Ernest Fraenkel},
  title        = {A hypothesis-based approach for identifying the binding specificity
                  of regulatory proteins from chromatin immunoprecipitation data},
  journal      = {Bioinform.},
  volume       = {22},
  number       = {4},
  pages        = {423--429},
  year         = {2006},
  url          = {https://doi.org/10.1093/bioinformatics/bti815},
  doi          = {10.1093/BIOINFORMATICS/BTI815},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MacIsaacGNOSGYF06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/GhoshHSSG06,
  author       = {Srinka Ghosh and
                  Heather A. Hirsch and
                  Edward A. Sekinger and
                  Kevin Struhl and
                  Thomas R. Gingeras},
  title        = {Rank-statistics based enrichment-site prediction algorithm developed
                  for chromatin immunoprecipitation on chip experiments},
  journal      = {{BMC} Bioinform.},
  volume       = {7},
  pages        = {434},
  year         = {2006},
  url          = {https://doi.org/10.1186/1471-2105-7-434},
  doi          = {10.1186/1471-2105-7-434},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/GhoshHSSG06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}