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@article{DBLP:journals/datascience/DavidRCLCGHKKLOPKRSWWBMABCC23,
  author       = {Romain David and
                  Audrey S. Richard and
                  Claire Connellan and
                  Katharina B. Lauer and
                  Maria Luisa Chiusano and
                  Carole A. Goble and
                  Martin Houde and
                  Isabel Kemmer and
                  Antje Keppler and
                  Philippe Lieutaud and
                  Christian Ohmann and
                  Maria Panagiotopoulou and
                  Sara Raza Khan and
                  Arina Rybina and
                  Stian Soiland{-}Reyes and
                  Charlotte Wit and
                  Rudolf Wittner and
                  Rafael Andrade Buono and
                  Sarah Arnaud Marsh and
                  Pauline Audergon and
                  Dylan Bonfils and
                  Jos{\'{e}} Mar{\'{\i}}a Carazo and
                  Remi Charrel and
                  Frederik Coppens and
                  Wolfgang Fecke and
                  Claudia Filippone and
                  Eva G. Alvarez and
                  Sheraz Gul and
                  Henning Hermjakob and
                  Katja Herzog and
                  Petr Holub and
                  Lukasz Kozera and
                  Allyson L. Lister and
                  Jos{\'{e}} L{\'{o}}pez{-}Coronado and
                  B{\'{e}}n{\'{e}}dicte Madon and
                  Kurt Majcen and
                  William Martin and
                  Wolfgang M{\"{u}}ller and
                  Elli Papadopoulou and
                  Christine M. A. Prat and
                  Paolo Romano and
                  Susanna{-}Assunta Sansone and
                  Gary Saunders and
                  Niklas Blomberg and
                  Jonathan Ewbank},
  title        = {Umbrella Data Management Plans to Integrate {FAIR} Data: Lessons From
                  the ISIDORe and {BY-COVID} Consortia for Pandemic Preparedness},
  journal      = {Data Sci. J.},
  volume       = {22},
  pages        = {35},
  year         = {2023},
  url          = {https://doi.org/10.5334/dsj-2023-035},
  doi          = {10.5334/DSJ-2023-035},
  timestamp    = {Fri, 24 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/datascience/DavidRCLCGHKKLOPKRSWWBMABCC23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/HiltemannRGHLBJWBGGRBMSCDSBPGDFF23,
  author       = {Saskia D. Hiltemann and
                  Helena Rasche and
                  Simon L. Gladman and
                  Hans{-}Rudolf Hotz and
                  Delphine Larivi{\`{e}}re and
                  Daniel J. Blankenberg and
                  Pratik D. Jagtap and
                  Thomas Wollmann and
                  Anthony Bretaudeau and
                  Nadia Gou{\'{e}} and
                  Timothy J. Griffin and
                  Coline Royaux and
                  Yvan Le Bras and
                  Subina P. Mehta and
                  Anna Syme and
                  Frederik Coppens and
                  Bert Droesbeke and
                  Nicola Soranzo and
                  Wendi A. Bacon and
                  Fotis E. Psomopoulos and
                  Crist{\'{o}}bal Gallardo{-}Alba and
                  John Davis and
                  Melanie Christine F{\"{o}}ll and
                  Matthias Fahrner and
                  Maria A. Doyle and
                  Beatriz Serrano{-}Solano and
                  Anne Fouilloux and
                  Peter van Heusden and
                  Wolfgang Maier and
                  Dave Clements and
                  Florian Heyl and
                  The Galaxy Team and
                  Bj{\"{o}}rn A. Gr{\"{u}}ning and
                  B{\'{e}}r{\'{e}}nice Batut},
  title        = {Galaxy Training: {A} powerful framework for teaching!},
  journal      = {PLoS Comput. Biol.},
  volume       = {19},
  number       = {1},
  year         = {2023},
  url          = {https://doi.org/10.1371/journal.pcbi.1010752},
  doi          = {10.1371/JOURNAL.PCBI.1010752},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/HiltemannRGHLBJWBGGRBMSCDSBPGDFF23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cordi/FatimaABBWGC23,
  author       = {Nazeefa Fatima and
                  Pinar Alper and
                  Frederico Bianchini and
                  Korbinian B{\"{o}}sl and
                  Ulrike Wittig and
                  Carole A. Goble and
                  Frederik Coppens},
  editor       = {York Sure{-}Vetter and
                  Carole A. Goble},
  title        = {RDMkit: The Research Data Management Toolkit for Life Sciences},
  booktitle    = {1st Conference on Research Data Infrastructure - Connecting Communities,
                  CoRDI 2023, Karlsruhe, Germany, September 12-14, 2023},
  publisher    = {{TIB} Open Publishing},
  year         = {2023},
  url          = {https://doi.org/10.52825/cordi.v1i.251},
  doi          = {10.52825/CORDI.V1I.251},
  timestamp    = {Mon, 01 Apr 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cordi/FatimaABBWGC23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cordi/GobleBSOEDMR0GL23,
  author       = {Carole A. Goble and
                  Finn Bacall and
                  Stian Soiland{-}Reyes and
                  Stuart Owen and
                  Ignacio Eguinoa and
                  Bert Droesbeke and
                  Herv{\'{e}} M{\'{e}}nager and
                  Laura Rodr{\'{\i}}guez{-}Navas and
                  Jos{\'{e}} Mar{\'{\i}}a Fern{\'{a}}ndez and
                  Bj{\"{o}}rn A. Gr{\"{u}}ning and
                  Simone Leo and
                  Luca Pireddu and
                  Michael R. Crusoe and
                  Johan Gustafsson and
                  Salvador Capella{-}Guti{\'{e}}rrez and
                  Frederik Coppens},
  editor       = {York Sure{-}Vetter and
                  Carole A. Goble},
  title        = {The EOSC-Life Workflow Collaboratory for the Life Sciences},
  booktitle    = {1st Conference on Research Data Infrastructure - Connecting Communities,
                  CoRDI 2023, Karlsruhe, Germany, September 12-14, 2023},
  publisher    = {{TIB} Open Publishing},
  year         = {2023},
  url          = {https://doi.org/10.52825/cordi.v1i.352},
  doi          = {10.52825/CORDI.V1I.352},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cordi/GobleBSOEDMR0GL23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2304-00019,
  author       = {Rafael Ferreira da Silva and
                  Rosa M. Badia and
                  Venkat Bala and
                  Debbie Bard and
                  Peer{-}Timo Bremer and
                  Ian Buckley and
                  Silvina Ca{\'{\i}}no{-}Lores and
                  Kyle Chard and
                  Carole A. Goble and
                  Shantenu Jha and
                  Daniel S. Katz and
                  Daniel E. Laney and
                  Manish Parashar and
                  Fr{\'{e}}d{\'{e}}ric Suter and
                  Nick Tyler and
                  Thomas D. Uram and
                  Ilkay Altintas and
                  Stefan Andersson and
                  William Arndt and
                  Juan Aznar and
                  Jonathan Bader and
                  Bartosz Balis and
                  Chris Blanton and
                  Kelly Rosa Braghetto and
                  Aharon Brodutch and
                  Paul Brunk and
                  Henri Casanova and
                  Alba Cervera{-}Lierta and
                  Justin Chigu and
                  Tain{\~{a}} Coleman and
                  Nick Collier and
                  Iacopo Colonnelli and
                  Frederik Coppens and
                  Michael R. Crusoe and
                  Will Cunningham and
                  Bruno de Paula Kinoshita and
                  Paolo Di Tommaso and
                  Charles M. Doutriaux and
                  Matthew Downton and
                  Wael R. Elwasif and
                  Bjoern Enders and
                  Chris Erdmann and
                  Thomas Fahringer and
                  Ludmilla Figueiredo and
                  Rosa Filgueira and
                  Martin Foltin and
                  Anne Fouilloux and
                  Luiz Gadelha and
                  Andy Gallo and
                  Artur Garc{\'{\i}}a{-}S{\'{a}}ez and
                  et al.},
  title        = {Workflows Community Summit 2022: {A} Roadmap Revolution},
  journal      = {CoRR},
  volume       = {abs/2304.00019},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2304.00019},
  doi          = {10.48550/ARXIV.2304.00019},
  eprinttype    = {arXiv},
  eprint       = {2304.00019},
  timestamp    = {Sun, 20 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2304-00019.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiyanageBDEFGHJ22,
  author       = {Isuru Udara Liyanage and
                  Tony Burdett and
                  Bert Droesbeke and
                  Karoly Erdos and
                  Rolando Fernandez and
                  Alasdair J. G. Gray and
                  Muhammad Haseeb and
                  Simon Jupp and
                  Flavia Penim and
                  Cyril Pommier and
                  Philippe Rocca{-}Serra and
                  M{\'{e}}lanie Courtot and
                  Frederik Coppens},
  title        = {{ELIXIR} biovalidator for semantic validation of life science metadata},
  journal      = {Bioinform.},
  volume       = {38},
  number       = {11},
  pages        = {3141--3142},
  year         = {2022},
  url          = {https://doi.org/10.1093/bioinformatics/btac195},
  doi          = {10.1093/BIOINFORMATICS/BTAC195},
  timestamp    = {Wed, 27 Jul 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LiyanageBDEFGHJ22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/datasci/Soiland-ReyesSC22,
  author       = {Stian Soiland{-}Reyes and
                  Peter Sefton and
                  Merc{\`{e}} Crosas and
                  Leyla Jael Castro and
                  Frederik Coppens and
                  Jos{\'{e}} Mar{\'{\i}}a Fern{\'{a}}ndez and
                  Daniel Garijo and
                  Bj{\"{o}}rn A. Gr{\"{u}}ning and
                  Marco La Rosa and
                  Simone Leo and
                  Eoghan {\'{O}} Carrag{\'{a}}in and
                  Marc Portier and
                  Ana Trisovic and
                  RO{-}Crate Community and
                  Paul Groth and
                  Carole A. Goble},
  title        = {Packaging research artefacts with RO-Crate},
  journal      = {Data Sci.},
  volume       = {5},
  number       = {2},
  pages        = {97--138},
  year         = {2022},
  url          = {https://doi.org/10.3233/ds-210053},
  doi          = {10.3233/DS-210053},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/datasci/Soiland-ReyesSC22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dint/Serrano-SolanoF22,
  author       = {Beatriz Serrano{-}Solano and
                  Anne Fouilloux and
                  Ignacio Eguinoa and
                  Mat{\'{u}}s Kalas and
                  Bj{\"{o}}rn A. Gr{\"{u}}ning and
                  Frederik Coppens},
  title        = {Galaxy: {A} Decade of Realising {CWFR} Concepts},
  journal      = {Data Intell.},
  volume       = {4},
  number       = {2},
  pages        = {358--371},
  year         = {2022},
  url          = {https://doi.org/10.1162/dint\_a\_00136},
  doi          = {10.1162/DINT\_A\_00136},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/dint/Serrano-SolanoF22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AfganNGBGSOMLSF22,
  author       = {Enis Afgan and
                  Anton Nekrutenko and
                  Bj{\"{o}}rn A. Gr{\"{u}}ning and
                  Daniel J. Blankenberg and
                  Jeremy Goecks and
                  Michael C. Schatz and
                  Alexander E. Ostrovsky and
                  Alexandru Mahmoud and
                  Andrew J. Lonie and
                  Anna Syme and
                  Anne Fouilloux and
                  Anthony Bretaudeau and
                  Anup Kumar and
                  Arthur C. Eschenlauer and
                  Assunta D. Desanto and
                  Aysam Guerler and
                  Beatriz Serrano{-}Solano and
                  B{\'{e}}r{\'{e}}nice Batut and
                  Bradley W. Langhorst and
                  Bridget Carr and
                  Bryan A. Raubenolt and
                  Cameron J. Hyde and
                  Catherine J. Bromhead and
                  Christopher B. Barnett and
                  Coline Royaux and
                  Crist{\'{o}}bal Gallardo and
                  Daniel J. Fornika and
                  Dannon Baker and
                  Dave Bouvier and
                  Dave Clements and
                  David A. de Lima Morais and
                  David Lopez Tabernero and
                  Delphine Larivi{\`{e}}re and
                  Engy Nasr and
                  Federico Zambelli and
                  Florian Heyl and
                  Fotis E. Psomopoulos and
                  Frederik Coppens and
                  Gareth R. Price and
                  Gianmauro Cuccuru and
                  Gildas Le Corguill{\'{e}} and
                  Gregory Von Kuster and
                  Gulsum Gudukbay and
                  Helena Rasche and
                  Hans{-}Rudolf Hotz and
                  Ignacio Eguinoa and
                  Igor V. Makunin and
                  Isuru Ranawaka and
                  James Taylor and
                  Jayadev Joshi and
                  Jennifer Hillman{-}Jackson and
                  John Chilton and
                  Kaivan Kamali and
                  Keith Suderman and
                  Krzysztof Poterlowicz and
                  Yvan Le Bras and
                  Lucille Lopez{-}Delisle and
                  Luke Sargent and
                  Madeline E. Bassetti and
                  Marco Antonio Tangaro and
                  Marius van den Beek and
                  Martin Cech and
                  Matthias Bernt and
                  Matthias Fahrner and
                  Mehmet Tekman and
                  Melanie Christine F{\"{o}}ll and
                  Michael R. Crusoe and
                  Miguel Roncoroni and
                  Natalie Kucher and
                  Nate Coraor and
                  Nicholas Stoler and
                  Nick Rhodes and
                  Nicola Soranzo and
                  Niko Pinter and
                  Nuwan Goonasekera and
                  Pablo A. Moreno and
                  Pavankumar Videm and
                  Petera Melanie and
                  Pietro Mandreoli and
                  Pratik D. Jagtap and
                  Qiang Gu and
                  Ralf J. M. Weber and
                  Ross Lazarus and
                  Ruben H. P. Vorderman and
                  Saskia D. Hiltemann and
                  Sergey Golitsynskiy and
                  Shilpa Garg and
                  Simon A. Bray and
                  Simon L. Gladman and
                  Simone Leo and
                  Subina P. Mehta and
                  Timothy J. Griffin and
                  Vahid Jalili and
                  Yves Vandenbrouck and
                  Victor Wen and
                  Vijay K. Nagampalli and
                  Wendi A. Bacon and
                  Willem L. De Koning and
                  Wolfgang Maier and
                  Peter J. Briggs},
  title        = {The Galaxy platform for accessible, reproducible and collaborative
                  biomedical analyses: 2022 update},
  journal      = {Nucleic Acids Res.},
  volume       = {50},
  number       = {{W1}},
  pages        = {345--351},
  year         = {2022},
  url          = {https://doi.org/10.1093/nar/gkac247},
  doi          = {10.1093/NAR/GKAC247},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/AfganNGBGSOMLSF22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BelSWKBCV22,
  author       = {Michiel Van Bel and
                  Francesca Silvestri and
                  Eric M. Weitz and
                  Lukasz Kreft and
                  Alexander Botzki and
                  Frederik Coppens and
                  Klaas Vandepoele},
  title        = {{PLAZA} 5.0: extending the scope and power of comparative and functional
                  genomics in plants},
  journal      = {Nucleic Acids Res.},
  volume       = {50},
  number       = {{D1}},
  pages        = {1468--1474},
  year         = {2022},
  url          = {https://doi.org/10.1093/nar/gkab1024},
  doi          = {10.1093/NAR/GKAB1024},
  timestamp    = {Tue, 06 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/BelSWKBCV22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BrackCSOLWGDCGE22,
  author       = {Paul Brack and
                  Peter Crowther and
                  Stian Soiland{-}Reyes and
                  Stuart Owen and
                  Douglas Lowe and
                  Alan R. Williams and
                  Quentin Groom and
                  Mathias Dillen and
                  Frederik Coppens and
                  Bj{\"{o}}rn A. Gr{\"{u}}ning and
                  Ignacio Eguinoa and
                  Philip Ewels and
                  Carole A. Goble},
  title        = {Ten simple rules for making a software tool workflow-ready},
  journal      = {PLoS Comput. Biol.},
  volume       = {18},
  number       = {3},
  year         = {2022},
  url          = {https://doi.org/10.1371/journal.pcbi.1009823},
  doi          = {10.1371/JOURNAL.PCBI.1009823},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/BrackCSOLWGDCGE22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RoncoroniDERDYG21,
  author       = {Miguel Roncoroni and
                  Bert Droesbeke and
                  Ignacio Eguinoa and
                  Kim De Ruyck and
                  Flora D'anna and
                  Dilmurat Yusuf and
                  Bj{\"{o}}rn A. Gr{\"{u}}ning and
                  Rolf Backofen and
                  Frederik Coppens},
  title        = {A SARS-CoV-2 sequence submission tool for the European Nucleotide
                  Archive},
  journal      = {Bioinform.},
  volume       = {37},
  number       = {21},
  pages        = {3983--3985},
  year         = {2021},
  url          = {https://doi.org/10.1093/bioinformatics/btab421},
  doi          = {10.1093/BIOINFORMATICS/BTAB421},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RoncoroniDERDYG21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/works-ws/SilvaCCABBCCNEF21,
  author       = {Rafael Ferreira da Silva and
                  Henri Casanova and
                  Kyle Chard and
                  Ilkay Altintas and
                  Rosa M. Badia and
                  Bartosz Balis and
                  Tain{\~{a}} Coleman and
                  Frederik Coppens and
                  Frank Di Natale and
                  Bjoern Enders and
                  Thomas Fahringer and
                  Rosa Filgueira and
                  Grigori Fursin and
                  Daniel Garijo and
                  Carole A. Goble and
                  Dorran Howell and
                  Shantenu Jha and
                  Daniel S. Katz and
                  Daniel E. Laney and
                  Ulf Leser and
                  Maciej Malawski and
                  Kshitij Mehta and
                  Lo{\"{\i}}c Pottier and
                  Jonathan Ozik and
                  J. Luc Peterson and
                  Lavanya Ramakrishnan and
                  Stian Soiland{-}Reyes and
                  Douglas Thain and
                  Matthew Wolf},
  title        = {A Community Roadmap for Scientific Workflows Research and Development},
  booktitle    = {2021 {IEEE} Workshop on Workflows in Support of Large-Scale Science
                  (WORKS), St. Louis, MO, USA, November 15, 2021},
  pages        = {81--90},
  publisher    = {{IEEE}},
  year         = {2021},
  url          = {https://doi.org/10.1109/WORKS54523.2021.00016},
  doi          = {10.1109/WORKS54523.2021.00016},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/works-ws/SilvaCCABBCCNEF21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-05177,
  author       = {Rafael Ferreira da Silva and
                  Henri Casanova and
                  Kyle Chard and
                  Tain{\~{a}} Coleman and
                  Dan Laney and
                  Dong H. Ahn and
                  Shantenu Jha and
                  Dorran Howell and
                  Stian Soiland{-}Reyes and
                  Ilkay Altintas and
                  Douglas Thain and
                  Rosa Filgueira and
                  Yadu N. Babuji and
                  Rosa M. Badia and
                  Bartosz Balis and
                  Silvina Ca{\'{\i}}no{-}Lores and
                  Scott Callaghan and
                  Frederik Coppens and
                  Michael R. Crusoe and
                  Kaushik De and
                  Frank Di Natale and
                  Tu Mai Anh Do and
                  Bjoern Enders and
                  Thomas Fahringer and
                  Anne Fouilloux and
                  Grigori Fursin and
                  Alban Gaignard and
                  Alex Ganose and
                  Daniel Garijo and
                  Sandra Gesing and
                  Carole A. Goble and
                  Adil Hasan and
                  Sebastiaan Huber and
                  Daniel S. Katz and
                  Ulf Leser and
                  Douglas Lowe and
                  Bertram Lud{\"{a}}scher and
                  Ketan Maheshwari and
                  Maciej Malawski and
                  Rajiv Mayani and
                  Kshitij Mehta and
                  Andr{\'{e}} Merzky and
                  Todd S. Munson and
                  Jonathan Ozik and
                  Lo{\"{\i}}c Pottier and
                  Sashko Ristov and
                  Mehdi Roozmeh and
                  Renan Souza and
                  Fr{\'{e}}d{\'{e}}ric Suter and
                  Benjam{\'{\i}}n Tovar and
                  Matteo Turilli and
                  Karan Vahi and
                  Alvaro Vidal{-}Torreira and
                  Wendy R. Whitcup and
                  Michael Wilde and
                  Alan R. Williams and
                  Matthew Wolf and
                  Justin M. Wozniak},
  title        = {Workflows Community Summit: Advancing the State-of-the-art of Scientific
                  Workflows Management Systems Research and Development},
  journal      = {CoRR},
  volume       = {abs/2106.05177},
  year         = {2021},
  url          = {https://arxiv.org/abs/2106.05177},
  eprinttype    = {arXiv},
  eprint       = {2106.05177},
  timestamp    = {Sun, 17 Dec 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2106-05177.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2108-06503,
  author       = {Stian Soiland{-}Reyes and
                  Peter Sefton and
                  Merc{\`{e}} Crosas and
                  Leyla Jael Castro and
                  Frederik Coppens and
                  Jos{\'{e}} Mar{\'{\i}}a Fern{\'{a}}ndez and
                  Daniel Garijo and
                  Bj{\"{o}}rn A. Gr{\"{u}}ning and
                  Marco La Rosa and
                  Simone Leo and
                  Eoghan {\'{O}} Carrag{\'{a}}in and
                  Marc Portier and
                  Ana Trisovic and
                  RO{-}Crate Community and
                  Paul Groth and
                  Carole A. Goble},
  title        = {Packaging research artefacts with RO-Crate},
  journal      = {CoRR},
  volume       = {abs/2108.06503},
  year         = {2021},
  url          = {https://arxiv.org/abs/2108.06503},
  eprinttype    = {arXiv},
  eprint       = {2108.06503},
  timestamp    = {Fri, 07 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2108-06503.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2110-02168,
  author       = {Rafael Ferreira da Silva and
                  Henri Casanova and
                  Kyle Chard and
                  Ilkay Altintas and
                  Rosa M. Badia and
                  Bartosz Balis and
                  Tain{\~{a}} Coleman and
                  Frederik Coppens and
                  Frank Di Natale and
                  Bjoern Enders and
                  Thomas Fahringer and
                  Rosa Filgueira and
                  Grigori Fursin and
                  Daniel Garijo and
                  Carole A. Goble and
                  Dorran Howell and
                  Shantenu Jha and
                  Daniel S. Katz and
                  Daniel E. Laney and
                  Ulf Leser and
                  Maciej Malawski and
                  Kshitij Mehta and
                  Lo{\"{\i}}c Pottier and
                  Jonathan Ozik and
                  J. Luc Peterson and
                  Lavanya Ramakrishnan and
                  Stian Soiland{-}Reyes and
                  Douglas Thain and
                  Matthew Wolf},
  title        = {A Community Roadmap for Scientific Workflows Research and Development},
  journal      = {CoRR},
  volume       = {abs/2110.02168},
  year         = {2021},
  url          = {https://arxiv.org/abs/2110.02168},
  eprinttype    = {arXiv},
  eprint       = {2110.02168},
  timestamp    = {Sun, 20 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2110-02168.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ro/Coppens19,
  author       = {Frederik Coppens},
  title        = {The Data Life Cycle in Practice: an Infrastructure Point of View},
  booktitle    = {Proceedings of Workshop on Research Objects (RO2019), San Diego, CA,
                  USA, September 24, 2019},
  year         = {2019},
  url          = {https://doi.org/10.5281/zenodo.3270824},
  doi          = {10.5281/ZENODO.3270824},
  timestamp    = {Thu, 16 Jul 2020 14:32:50 +0200},
  biburl       = {https://dblp.org/rec/conf/ro/Coppens19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BelDVKBPCV18,
  author       = {Michiel Van Bel and
                  Tim Diels and
                  Emmelien Vancaester and
                  Lukasz Kreft and
                  Alexander Botzki and
                  Yves Van de Peer and
                  Frederik Coppens and
                  Klaas Vandepoele},
  title        = {{PLAZA} 4.0: an integrative resource for functional, evolutionary
                  and comparative plant genomics},
  journal      = {Nucleic Acids Res.},
  volume       = {46},
  number       = {Database-Issue},
  pages        = {D1190--D1196},
  year         = {2018},
  url          = {https://doi.org/10.1093/nar/gkx1002},
  doi          = {10.1093/NAR/GKX1002},
  timestamp    = {Sun, 25 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/BelDVKBPCV18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MiettinenIKPBBC18,
  author       = {Karel Miettinen and
                  Sabrina I{\~{n}}igo and
                  Lukasz Kreft and
                  Jacob Pollier and
                  Christof De Bo and
                  Alexander Botzki and
                  Frederik Coppens and
                  S{\o}ren Bak and
                  Alain Goossens},
  title        = {The TriForC database: a comprehensive up-to-date resource of plant
                  triterpene biosynthesis},
  journal      = {Nucleic Acids Res.},
  volume       = {46},
  number       = {Database-Issue},
  pages        = {D586--D594},
  year         = {2018},
  url          = {https://doi.org/10.1093/nar/gkx925},
  doi          = {10.1093/NAR/GKX925},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/MiettinenIKPBBC18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KreftBCVB17,
  author       = {Lukasz Kreft and
                  Alexander Botzki and
                  Frederik Coppens and
                  Klaas Vandepoele and
                  Michiel Van Bel},
  title        = {PhyD3: a phylogenetic tree viewer with extended phyloXML support for
                  functional genomics data visualization},
  journal      = {Bioinform.},
  volume       = {33},
  number       = {18},
  pages        = {2946--2947},
  year         = {2017},
  url          = {https://doi.org/10.1093/bioinformatics/btx324},
  doi          = {10.1093/BIOINFORMATICS/BTX324},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KreftBCVB17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/IsonRMKRCABBBBB16,
  author       = {Jon C. Ison and
                  Kristoffer Rapacki and
                  Herv{\'{e}} M{\'{e}}nager and
                  Mat{\'{u}}s Kalas and
                  Emil Rydza and
                  Piotr Chmura and
                  Christian Anthon and
                  Niall Beard and
                  Karel Berka and
                  Dan M. Bolser and
                  Tim Booth and
                  Anthony Bretaudeau and
                  Jan Brezovsky and
                  Rita Casadio and
                  Gianni Cesareni and
                  Frederik Coppens and
                  Michael Cornell and
                  Gianmauro Cuccuru and
                  Kristian Davidsen and
                  Gianluca Della Vedova and
                  Tunca Dogan and
                  Olivia Doppelt{-}Azeroual and
                  Laura Emery and
                  Elisabeth Gasteiger and
                  Thomas Gatter and
                  Tatyana Goldberg and
                  Marie Grosjean and
                  Bj{\"{o}}rn A. Gr{\"{u}}ning and
                  Manuela Helmer{-}Citterich and
                  Hans Ienasescu and
                  Vassilios Ioannidis and
                  Martin Closter Jespersen and
                  Rafael C. Jim{\'{e}}nez and
                  Nick S. Juty and
                  Peter Juvan and
                  Maximilian Koch and
                  Camille Laibe and
                  Jing{-}Woei Li and
                  Luana Licata and
                  Fabien Mareuil and
                  Ivan Micetic and
                  Rune M{\o}llegaard Friborg and
                  S{\'{e}}bastien Moretti and
                  Chris Morris and
                  Steffen M{\"{o}}ller and
                  Aleksandra Nenadic and
                  Hedi Peterson and
                  Giuseppe Profiti and
                  Peter M. Rice and
                  Paolo Romano and
                  Paola Roncaglia and
                  Rabie Saidi and
                  Andrea Schafferhans and
                  Veit Schw{\"{a}}mmle and
                  Callum Smith and
                  Maria Maddalena Sperotto and
                  Heinz Stockinger and
                  Radka Svobodov{\'{a}} Varekov{\'{a}} and
                  Silvio C. E. Tosatto and
                  Victor de la Torre and
                  Paolo Uva and
                  Allegra Via and
                  Guy Yachdav and
                  Federico Zambelli and
                  Gert Vriend and
                  Burkhard Rost and
                  Helen E. Parkinson and
                  Peter L{\o}ngreen and
                  S{\o}ren Brunak},
  title        = {Tools and data services registry: a community effort to document bioinformatics
                  resources},
  journal      = {Nucleic Acids Res.},
  volume       = {44},
  number       = {Database-Issue},
  pages        = {38--47},
  year         = {2016},
  url          = {https://doi.org/10.1093/nar/gkv1116},
  doi          = {10.1093/NAR/GKV1116},
  timestamp    = {Thu, 25 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/IsonRMKRCABBBBB16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/HendrickxBCDHKMVV08,
  author       = {Iris Hendrickx and
                  Gosse Bouma and
                  Frederik Coppens and
                  Walter Daelemans and
                  V{\'{e}}ronique Hoste and
                  Geert Kloosterman and
                  Anne{-}Marie Mineur and
                  Joeri Van Der Vloet and
                  Jean{-}Luc Verschelde},
  title        = {A Coreference Corpus and Resolution System for Dutch},
  booktitle    = {Proceedings of the International Conference on Language Resources
                  and Evaluation, {LREC} 2008, 26 May - 1 June 2008, Marrakech, Morocco},
  publisher    = {European Language Resources Association},
  year         = {2008},
  url          = {http://www.lrec-conf.org/proceedings/lrec2008/summaries/49.html},
  timestamp    = {Mon, 19 Aug 2019 15:22:28 +0200},
  biburl       = {https://dblp.org/rec/conf/lrec/HendrickxBCDHKMVV08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/otm/ZhaoKKCVTM04,
  author       = {Gang Zhao and
                  John Kingston and
                  Koen Kerremans and
                  Frederik Coppens and
                  Ruben Verlinden and
                  Rita Temmerman and
                  Robert Meersman},
  editor       = {Robert Meersman and
                  Zahir Tari and
                  Angelo Corsaro},
  title        = {Engineering an Ontology of Financial Securities Fraud},
  booktitle    = {On the Move to Meaningful Internet Systems 2004: {OTM} 2004 Workshops:
                  {OTM} Confederated International Workshops and Posters, GADA, JTRES,
                  MIOS, WORM, WOSE, PhDS, and {INTEROP} 2004, Agia Napa, Cyprus, October
                  25-29, 2004. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {3292},
  pages        = {605--620},
  publisher    = {Springer},
  year         = {2004},
  url          = {https://doi.org/10.1007/978-3-540-30470-8\_73},
  doi          = {10.1007/978-3-540-30470-8\_73},
  timestamp    = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/otm/ZhaoKKCVTM04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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