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@article{DBLP:journals/taes/LeiMWWSW24,
  author       = {Jiakun Lei and
                  Tao Meng and
                  Kun Wang and
                  Wei{-}Jia Wang and
                  Shujian Sun and
                  Lei Wang},
  title        = {Adaptive Reduced-Attitude Control for Spacecraft Boresight Alignment
                  With Safety Constraints and Accuracy Requirements},
  journal      = {{IEEE} Trans. Aerosp. Electron. Syst.},
  volume       = {60},
  number       = {4},
  pages        = {3936--3953},
  year         = {2024},
  url          = {https://doi.org/10.1109/TAES.2024.3373718},
  doi          = {10.1109/TAES.2024.3373718},
  timestamp    = {Sun, 08 Sep 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/taes/LeiMWWSW24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2402-12187,
  author       = {Leo Hyun Park and
                  Jaeuk Kim and
                  Myung Gyo Oh and
                  Jaewoo Park and
                  Taekyoung Kwon},
  title        = {Adversarial Feature Alignment: Balancing Robustness and Accuracy in
                  Deep Learning via Adversarial Training},
  journal      = {CoRR},
  volume       = {abs/2402.12187},
  year         = {2024},
  url          = {https://doi.org/10.48550/arXiv.2402.12187},
  doi          = {10.48550/ARXIV.2402.12187},
  eprinttype    = {arXiv},
  eprint       = {2402.12187},
  timestamp    = {Thu, 21 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2402-12187.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2407-20391,
  author       = {Seong Hun Lee and
                  Javier Civera},
  title        = {Alignment Scores: Robust Metrics for Multiview Pose Accuracy Evaluation},
  journal      = {CoRR},
  volume       = {abs/2407.20391},
  year         = {2024},
  url          = {https://doi.org/10.48550/arXiv.2407.20391},
  doi          = {10.48550/ARXIV.2407.20391},
  eprinttype    = {arXiv},
  eprint       = {2407.20391},
  timestamp    = {Wed, 21 Aug 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2407-20391.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2408-00307,
  author       = {Gareth Seneque and
                  Lap{-}Hang Ho and
                  Ariel Kuperman and
                  Nafise Erfanian Saeedi and
                  Jeffrey Molendijk},
  title        = {{ABC} Align: Large Language Model Alignment for Safety {\&} Accuracy},
  journal      = {CoRR},
  volume       = {abs/2408.00307},
  year         = {2024},
  url          = {https://doi.org/10.48550/arXiv.2408.00307},
  doi          = {10.48550/ARXIV.2408.00307},
  eprinttype    = {arXiv},
  eprint       = {2408.00307},
  timestamp    = {Fri, 06 Sep 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2408-00307.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/LiuZSXQY23,
  author       = {Zi Liu and
                  Yi{-}Heng Zhu and
                  Long{-}Chen Shen and
                  Xuan Xiao and
                  Wangren Qiu and
                  Dong{-}Jun Yu},
  title        = {Integrating unsupervised language model with multi-view multiple sequence
                  alignments for high-accuracy inter-chain contact prediction},
  journal      = {Comput. Biol. Medicine},
  volume       = {166},
  pages        = {107529},
  year         = {2023},
  url          = {https://doi.org/10.1016/j.compbiomed.2023.107529},
  doi          = {10.1016/J.COMPBIOMED.2023.107529},
  timestamp    = {Sat, 08 Jun 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cbm/LiuZSXQY23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/spl/WangB23,
  author       = {Shuoyao Wang and
                  Suzhi Bi},
  title        = {Improving Beam Alignment Accuracy in mmWave Communication Systems
                  With Auxiliary Tasks},
  journal      = {{IEEE} Signal Process. Lett.},
  volume       = {30},
  pages        = {992--996},
  year         = {2023},
  url          = {https://doi.org/10.1109/LSP.2023.3300190},
  doi          = {10.1109/LSP.2023.3300190},
  timestamp    = {Fri, 18 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/spl/WangB23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tim/WangZCLTLKZW23,
  author       = {Guanqiang Wang and
                  Chi{-}Zhou Zhang and
                  Ming{-}Song Chen and
                  Yong{-}Chen Lin and
                  Xianghua Tan and
                  Pei Liang and
                  Yu{-}Xin Kang and
                  Weidong Zeng and
                  Qiu Wang},
  title        = {Yolo-MSAPF: Multiscale Alignment Fusion With Parallel Feature Filtering
                  Model for High Accuracy Weld Defect Detection},
  journal      = {{IEEE} Trans. Instrum. Meas.},
  volume       = {72},
  pages        = {1--14},
  year         = {2023},
  url          = {https://doi.org/10.1109/TIM.2023.3302372},
  doi          = {10.1109/TIM.2023.3302372},
  timestamp    = {Thu, 31 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tim/WangZCLTLKZW23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ShenLWW23,
  author       = {Chengze Shen and
                  Baqiao Liu and
                  Kelly P. Williams and
                  Tandy J. Warnow},
  editor       = {Djamal Belazzougui and
                  A{\"{\i}}da Ouangraoua},
  title        = {{EMMA:} Adding Sequences into a Constraint Alignment with High Accuracy
                  and Scalability (Abstract)},
  booktitle    = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
                  2023, September 4-6, 2023, Houston, TX, {USA}},
  series       = {LIPIcs},
  volume       = {273},
  pages        = {2:1--2:2},
  publisher    = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
  year         = {2023},
  url          = {https://doi.org/10.4230/LIPIcs.WABI.2023.2},
  doi          = {10.4230/LIPICS.WABI.2023.2},
  timestamp    = {Wed, 21 Aug 2024 22:46:00 +0200},
  biburl       = {https://dblp.org/rec/conf/wabi/ShenLWW23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2305-19645,
  author       = {Jiakun Lei and
                  Tao Meng and
                  Kun Wang and
                  Weijia Wang and
                  Shujian Sun and
                  Lei Wang},
  title        = {Adaptive Reduced Attitude Control for Spacecraft Boresight Alignment
                  under Multiple Constraints with Guaranteed Accuracy},
  journal      = {CoRR},
  volume       = {abs/2305.19645},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2305.19645},
  doi          = {10.48550/ARXIV.2305.19645},
  eprinttype    = {arXiv},
  eprint       = {2305.19645},
  timestamp    = {Wed, 07 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2305-19645.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/aeog/NotaNH22,
  author       = {E. W. Nota and
                  W. Nijland and
                  T. de Haas},
  title        = {Improving UAV-SfM time-series accuracy by co-alignment and contributions
                  of ground control or {RTK} positioning},
  journal      = {Int. J. Appl. Earth Obs. Geoinformation},
  volume       = {109},
  pages        = {102772},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.jag.2022.102772},
  doi          = {10.1016/J.JAG.2022.102772},
  timestamp    = {Tue, 31 May 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/aeog/NotaNH22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShenZW22,
  author       = {Chengze Shen and
                  Paul Zaharias and
                  Tandy J. Warnow},
  title        = {MAGUS+eHMMs: improved multiple sequence alignment accuracy for fragmentary
                  sequences},
  journal      = {Bioinform.},
  volume       = {38},
  number       = {4},
  pages        = {918--924},
  year         = {2022},
  url          = {https://doi.org/10.1093/bioinformatics/btab788},
  doi          = {10.1093/BIOINFORMATICS/BTAB788},
  timestamp    = {Tue, 28 Feb 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ShenZW22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TagashiraA22,
  author       = {Masaki Tagashira and
                  Kiyoshi Asai},
  title        = {ConsAlifold: considering {RNA} structural alignments improves prediction
                  accuracy of {RNA} consensus secondary structures},
  journal      = {Bioinform.},
  volume       = {38},
  number       = {3},
  pages        = {710--719},
  year         = {2022},
  url          = {https://doi.org/10.1093/bioinformatics/btab738},
  doi          = {10.1093/BIOINFORMATICS/BTAB738},
  timestamp    = {Fri, 21 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TagashiraA22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sensors/ChoiPK22,
  author       = {Yeongjun Choi and
                  Suyeul Park and
                  Seok Kim},
  title        = {GCP-Based Automated Fine Alignment Method for Improving the Accuracy
                  of Coordinate Information on {UAV} Point Cloud Data},
  journal      = {Sensors},
  volume       = {22},
  number       = {22},
  pages        = {8735},
  year         = {2022},
  url          = {https://doi.org/10.3390/s22228735},
  doi          = {10.3390/S22228735},
  timestamp    = {Tue, 31 Jan 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/sensors/ChoiPK22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/taes/OuyangW22b,
  author       = {Wei Ouyang and
                  Yuanxin Wu},
  title        = {Optimization-Based Strapdown Attitude Alignment for High-Accuracy
                  Systems: Covariance Analysis With Applications},
  journal      = {{IEEE} Trans. Aerosp. Electron. Syst.},
  volume       = {58},
  number       = {5},
  pages        = {4053--4069},
  year         = {2022},
  url          = {https://doi.org/10.1109/TAES.2022.3157570},
  doi          = {10.1109/TAES.2022.3157570},
  timestamp    = {Sun, 13 Nov 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/taes/OuyangW22b.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cogsci/MattesP22,
  author       = {Bj{\"{o}}rn Mattes and
                  Stephanie Pieschl},
  editor       = {Jennifer Culbertson and
                  Hugh Rabagliati and
                  Ver{\'{o}}nica C. Ramenzoni and
                  Andrew Perfors},
  title        = {An Alignment of Standards Enhances Metacognitive Judgment Accuracy
                  in Explanatory Knowledge Tasks with Internet Search},
  booktitle    = {Proceedings of the 44th Annual Meeting of the Cognitive Science Society,
                  CogSci 2022, Toronto, ON, Canada, July 27-30, 2022},
  publisher    = {cognitivesciencesociety.org},
  year         = {2022},
  url          = {https://escholarship.org/uc/item/2vt834qk},
  timestamp    = {Tue, 30 Apr 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cogsci/MattesP22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/YanCA22,
  author       = {Yiqing Yan and
                  Nimisha Chaturvedi and
                  Raja Appuswamy},
  title        = {Optimizing the Accuracy of Randomized Embedding for Sequence Alignment},
  booktitle    = {{IEEE} International Parallel and Distributed Processing Symposium,
                  {IPDPS} Workshops 2022, Lyon, France, May 30 - June 3, 2022},
  pages        = {144--151},
  publisher    = {{IEEE}},
  year         = {2022},
  url          = {https://doi.org/10.1109/IPDPSW55747.2022.00036},
  doi          = {10.1109/IPDPSW55747.2022.00036},
  timestamp    = {Mon, 08 Aug 2022 16:44:20 +0200},
  biburl       = {https://dblp.org/rec/conf/ipps/YanCA22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/basesearch/Zakeri21,
  author       = {Mohsen Zakeri},
  title        = {Optimizing the accuracy of Lightweight Methods for Short Read Alignment
                  and Quantification},
  school       = {University of Maryland, College Park, MD, {USA}},
  year         = {2021},
  url          = {https://hdl.handle.net/1903/28383},
  doi          = {10.13016/L07S-WUJR},
  timestamp    = {Wed, 04 May 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/phd/basesearch/Zakeri21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Li21,
  author       = {Heng Li},
  title        = {New strategies to improve minimap2 alignment accuracy},
  journal      = {Bioinform.},
  volume       = {37},
  number       = {23},
  pages        = {4572--4574},
  year         = {2021},
  url          = {https://doi.org/10.1093/bioinformatics/btab705},
  doi          = {10.1093/BIOINFORMATICS/BTAB705},
  timestamp    = {Sat, 25 Dec 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Li21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sensors/BedkowskiNKSJKK21,
  author       = {Janusz Bedkowski and
                  Hubert Nowak and
                  Blazej Kubiak and
                  Witold Studzinski and
                  Maciej Janeczek and
                  Szymon Karas and
                  Adam Kopaczewski and
                  Przemyslaw Makosiej and
                  Jaroslaw Koszuk and
                  Michal Pec and
                  Krzysztof Miksa},
  title        = {A Novel Approach to Global Positioning System Accuracy Assessment,
                  Verified on LiDAR Alignment of One Million Kilometers at a Continent
                  Scale, as a Foundation for Autonomous {DRIVING} Safety Analysis},
  journal      = {Sensors},
  volume       = {21},
  number       = {17},
  pages        = {5691},
  year         = {2021},
  url          = {https://doi.org/10.3390/s21175691},
  doi          = {10.3390/S21175691},
  timestamp    = {Wed, 08 Sep 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/sensors/BedkowskiNKSJKK21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/BlodgettS20,
  author       = {Austin Blodgett and
                  Nathan Schneider},
  editor       = {Chengqing Zong and
                  Fei Xia and
                  Wenjie Li and
                  Roberto Navigli},
  title        = {Probabilistic, Structure-Aware Algorithms for Improved Variety, Accuracy,
                  and Coverage of {AMR} Alignments},
  booktitle    = {Proceedings of the 59th Annual Meeting of the Association for Computational
                  Linguistics and the 11th International Joint Conference on Natural
                  Language Processing, {ACL/IJCNLP} 2021, (Volume 1: Long Papers), Virtual
                  Event, August 1-6, 2021},
  pages        = {3310--3321},
  publisher    = {Association for Computational Linguistics},
  year         = {2021},
  url          = {https://doi.org/10.18653/v1/2021.acl-long.257},
  doi          = {10.18653/V1/2021.ACL-LONG.257},
  timestamp    = {Mon, 22 Nov 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/acl/BlodgettS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acssc/MarandiJRF21,
  author       = {Mostafa Khalili Marandi and
                  Christoph Jans and
                  Wolfgang Rave and
                  Gerhard P. Fettweis},
  title        = {Evaluation of Detection Accuracy and Efficiency of Considered Beam
                  Alignment Strategies for mmWave Massive {MIMO} Systems},
  booktitle    = {55th Asilomar Conference on Signals, Systems, and Computers, {ACSSC}
                  2021, Pacific Grove, CA, USA, October 31 - November 3, 2021},
  pages        = {664--671},
  publisher    = {{IEEE}},
  year         = {2021},
  url          = {https://doi.org/10.1109/IEEECONF53345.2021.9723262},
  doi          = {10.1109/IEEECONF53345.2021.9723262},
  timestamp    = {Tue, 08 Mar 2022 11:22:10 +0100},
  biburl       = {https://dblp.org/rec/conf/acssc/MarandiJRF21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-06002,
  author       = {Austin Blodgett and
                  Nathan Schneider},
  title        = {Probabilistic, Structure-Aware Algorithms for Improved Variety, Accuracy,
                  and Coverage of {AMR} Alignments},
  journal      = {CoRR},
  volume       = {abs/2106.06002},
  year         = {2021},
  url          = {https://arxiv.org/abs/2106.06002},
  eprinttype    = {arXiv},
  eprint       = {2106.06002},
  timestamp    = {Mon, 22 Nov 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2106-06002.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2108-13446,
  author       = {Albert Jim{\'{e}}nez Sanfiz and
                  Mohamed Akrout},
  title        = {Benchmarking the Accuracy and Robustness of Feedback Alignment Algorithms},
  journal      = {CoRR},
  volume       = {abs/2108.13446},
  year         = {2021},
  url          = {https://arxiv.org/abs/2108.13446},
  eprinttype    = {arXiv},
  eprint       = {2108.13446},
  timestamp    = {Fri, 03 Sep 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2108-13446.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/access/LiHWLZ20,
  author       = {Guanqing Li and
                  Shengxiang Huang and
                  Xinpeng Wang and
                  Chenfeng Li and
                  Wen Zhang},
  title        = {A New Alignment and Breakthrough Accuracy Optimization Strategy in
                  Long Immersed Tunnel Surveys},
  journal      = {{IEEE} Access},
  volume       = {8},
  pages        = {228326--228336},
  year         = {2020},
  url          = {https://doi.org/10.1109/ACCESS.2020.3046635},
  doi          = {10.1109/ACCESS.2020.3046635},
  timestamp    = {Thu, 20 Jun 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/access/LiHWLZ20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PolyanovskyLET20,
  author       = {Valery Polyanovsky and
                  Alexander Lifanov and
                  Natalia G. Esipova and
                  Vladimir G. Tumanyan},
  title        = {The ranging of amino acids substitution matrices of various types
                  in accordance with the alignment accuracy criterion},
  journal      = {{BMC} Bioinform.},
  volume       = {21-S},
  number       = {11},
  pages        = {294},
  year         = {2020},
  url          = {https://doi.org/10.1186/s12859-020-03616-0},
  doi          = {10.1186/S12859-020-03616-0},
  timestamp    = {Fri, 25 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/PolyanovskyLET20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijon/WangTC20,
  author       = {Teng Wang and
                  Xinjie Tong and
                  Wenzhe Cai},
  title        = {Attention-based face alignment: {A} solution to speed/accuracy trade-off},
  journal      = {Neurocomputing},
  volume       = {400},
  pages        = {86--96},
  year         = {2020},
  url          = {https://doi.org/10.1016/j.neucom.2020.03.023},
  doi          = {10.1016/J.NEUCOM.2020.03.023},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ijon/WangTC20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tim/HuangZDLZ20,
  author       = {Yulong Huang and
                  Zheng Zhang and
                  Siyuan Du and
                  Youfu Li and
                  Yonggang Zhang},
  title        = {A High-Accuracy GPS-Aided Coarse Alignment Method for MEMS-Based {SINS}},
  journal      = {{IEEE} Trans. Instrum. Meas.},
  volume       = {69},
  number       = {10},
  pages        = {7914--7932},
  year         = {2020},
  url          = {https://doi.org/10.1109/TIM.2020.2983578},
  doi          = {10.1109/TIM.2020.2983578},
  timestamp    = {Thu, 05 Sep 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tim/HuangZDLZ20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismar/LeuzeSDM20,
  author       = {Christoph Leuze and
                  Supriya Sathyanarayana and
                  Bruce L. Daniel and
                  Jennifer A. McNab},
  title        = {Landmark-based mixed-reality perceptual alignment of medical imaging
                  data and accuracy validation in living subjects},
  booktitle    = {2020 {IEEE} International Symposium on Mixed and Augmented Reality,
                  {ISMAR} 2020, Recife/Porto de Galinhas, Brazil, November 9-13, 2020},
  pages        = {659--664},
  publisher    = {{IEEE}},
  year         = {2020},
  url          = {https://doi.org/10.1109/ISMAR50242.2020.00095},
  doi          = {10.1109/ISMAR50242.2020.00095},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismar/LeuzeSDM20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sensors/YangCW19,
  author       = {Ping Yang and
                  Xiyuan Chen and
                  Junwei Wang},
  title        = {Decoupling of Airborne Dynamic Bending Deformation Angle and Its Application
                  in the High-Accuracy Transfer Alignment Process},
  journal      = {Sensors},
  volume       = {19},
  number       = {1},
  pages        = {214},
  year         = {2019},
  url          = {https://doi.org/10.3390/s19010214},
  doi          = {10.3390/S19010214},
  timestamp    = {Sun, 02 Jun 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/sensors/YangCW19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/3dic/JouveSCBFRM19,
  author       = {Amadine Jouve and
                  Lo{\"{\i}}c Sanchez and
                  Cl{\'{e}}ment Castan and
                  Nicolas Bresson and
                  Frank Fournel and
                  Nicolas Raynaud and
                  Pascal Metzger},
  title        = {Die to Wafer Direct Hybid Bonding Demonstration with High Alignment
                  Accuracy and Electrical Yields},
  booktitle    = {2019 International 3D Systems Integration Conference (3DIC), Sendai,
                  Japan, October 8-10, 2019},
  pages        = {1--7},
  publisher    = {{IEEE}},
  year         = {2019},
  url          = {https://doi.org/10.1109/3DIC48104.2019.9058905},
  doi          = {10.1109/3DIC48104.2019.9058905},
  timestamp    = {Thu, 20 May 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/3dic/JouveSCBFRM19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismir/GadermaierW19,
  author       = {Thassilo Gadermaier and
                  Gerhard Widmer},
  editor       = {Arthur Flexer and
                  Geoffroy Peeters and
                  Juli{\'{a}}n Urbano and
                  Anja Volk},
  title        = {A Study of Annotation and Alignment Accuracy for Performance Comparison
                  in Complex Orchestral Music},
  booktitle    = {Proceedings of the 20th International Society for Music Information
                  Retrieval Conference, {ISMIR} 2019, Delft, The Netherlands, November
                  4-8, 2019},
  pages        = {769--775},
  year         = {2019},
  url          = {http://archives.ismir.net/ismir2019/paper/000094.pdf},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismir/GadermaierW19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@misc{DBLP:data/10/GadermaierW19,
  author       = {Thassilo Gadermaier and
                  Gerhard Widmer},
  title        = {A Study of Annotation and Alignment Accuracy for Performance Comparison
                  in Complex Orchestral Music (Version 0.1)},
  publisher    = {Zenodo},
  year         = {2019},
  month        = oct,
  howpublished = {\url{https://doi.org/10.5281/zenodo.3260499}},
  note         = {Accessed on YYYY-MM-DD.},
  url          = {https://doi.org/10.5281/zenodo.3260499},
  doi          = {10.5281/ZENODO.3260499},
  timestamp    = {Fri, 19 Jul 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/data/10/GadermaierW19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1910-07394,
  author       = {Thassilo Gadermaier and
                  Gerhard Widmer},
  title        = {A Study of Annotation and Alignment Accuracy for Performance Comparison
                  in Complex Orchestral Music},
  journal      = {CoRR},
  volume       = {abs/1910.07394},
  year         = {2019},
  url          = {http://arxiv.org/abs/1910.07394},
  eprinttype    = {arXiv},
  eprint       = {1910.07394},
  timestamp    = {Tue, 22 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1910-07394.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShresthaYA18,
  author       = {Anish Man Singh Shrestha and
                  Naruki Yoshikawa and
                  Kiyoshi Asai},
  title        = {Combining probabilistic alignments with read pair information improves
                  accuracy of split-alignments},
  journal      = {Bioinform.},
  volume       = {34},
  number       = {21},
  pages        = {3631--3637},
  year         = {2018},
  url          = {https://doi.org/10.1093/bioinformatics/bty398},
  doi          = {10.1093/BIOINFORMATICS/BTY398},
  timestamp    = {Mon, 25 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ShresthaYA18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/SarkarZMP18,
  author       = {Hirak Sarkar and
                  Mohsen Zakeri and
                  Laraib Malik and
                  Rob Patro},
  editor       = {Amarda Shehu and
                  Cathy H. Wu and
                  Christina Boucher and
                  Jing Li and
                  Hongfang Liu and
                  Mihai Pop},
  title        = {Towards Selective-Alignment: Bridging the Accuracy Gap between Alignment-Based
                  and Alignment-Free Transcript Quantification},
  booktitle    = {Proceedings of the 2018 {ACM} International Conference on Bioinformatics,
                  Computational Biology, and Health Informatics, {BCB} 2018, Washington,
                  DC, USA, August 29 - September 01, 2018},
  pages        = {27--36},
  publisher    = {{ACM}},
  year         = {2018},
  url          = {https://doi.org/10.1145/3233547.3233589},
  doi          = {10.1145/3233547.3233589},
  timestamp    = {Mon, 10 Jun 2024 20:41:10 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/SarkarZMP18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/globecom/OzawaOPJTN18,
  author       = {Masayoshi Ozawa and
                  Tomoaki Ohtsuki and
                  Fereidoun H. Panahi and
                  Wenjie Jiang and
                  Yasushi Takatori and
                  Tadao Nakagawa},
  title        = {A Low-Complexity High-Accuracy {AR} Based Channel Prediction Method
                  for Interference Alignment},
  booktitle    = {{IEEE} Global Communications Conference, {GLOBECOM} 2018, Abu Dhabi,
                  United Arab Emirates, December 9-13, 2018},
  pages        = {1--7},
  publisher    = {{IEEE}},
  year         = {2018},
  url          = {https://doi.org/10.1109/GLOCOM.2018.8647292},
  doi          = {10.1109/GLOCOM.2018.8647292},
  timestamp    = {Fri, 29 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/globecom/OzawaOPJTN18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1802-02438,
  author       = {Hoda Mohammadzade and
                  Amirhossein Sayyafan and
                  Benyamin Ghojogh},
  title        = {Pixel-Level Alignment of Facial Images for High Accuracy Recognition
                  Using Ensemble of Patches},
  journal      = {CoRR},
  volume       = {abs/1802.02438},
  year         = {2018},
  url          = {http://arxiv.org/abs/1802.02438},
  eprinttype    = {arXiv},
  eprint       = {1802.02438},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1802-02438.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/BeheraJJKDM17,
  author       = {Narayan Behera and
                  M. S. Jeevitesh and
                  Justin Jose and
                  Krishna Kant and
                  Alpana Dey and
                  Javed Mazher},
  editor       = {Petros Koumoutsakos and
                  Michael Lees and
                  Valeria V. Krzhizhanovskaya and
                  Jack J. Dongarra and
                  Peter M. A. Sloot},
  title        = {Higher accuracy protein multiple sequence alignments by genetic algorithm},
  booktitle    = {International Conference on Computational Science, {ICCS} 2017, 12-14
                  June 2017, Zurich, Switzerland},
  series       = {Procedia Computer Science},
  volume       = {108},
  pages        = {1135--1144},
  publisher    = {Elsevier},
  year         = {2017},
  url          = {https://doi.org/10.1016/j.procs.2017.05.100},
  doi          = {10.1016/J.PROCS.2017.05.100},
  timestamp    = {Thu, 08 Jul 2021 16:04:01 +0200},
  biburl       = {https://dblp.org/rec/conf/iccS/BeheraJJKDM17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DeBlasioK17,
  author       = {Dan F. DeBlasio and
                  John D. Kececioglu},
  editor       = {S{\"{u}}leyman Cenk Sahinalp},
  title        = {Boosting Alignment Accuracy by Adaptive Local Realignment},
  booktitle    = {Research in Computational Molecular Biology - 21st Annual International
                  Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10229},
  pages        = {1--17},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-56970-3\_1},
  doi          = {10.1007/978-3-319-56970-3\_1},
  timestamp    = {Sat, 30 May 2020 20:04:52 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/DeBlasioK17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuSS16,
  author       = {Ruifeng Hu and
                  Guibo Sun and
                  Xiaobo Sun},
  title        = {LSCplus: a fast solution for improving long read accuracy by short
                  read alignment},
  journal      = {{BMC} Bioinform.},
  volume       = {17},
  pages        = {451:1--451:9},
  year         = {2016},
  url          = {https://doi.org/10.1186/s12859-016-1316-y},
  doi          = {10.1186/S12859-016-1316-Y},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/HuSS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icb/RathgebHUB16,
  author       = {Christian Rathgeb and
                  Heinz Hofbauer and
                  Andreas Uhl and
                  Christoph Busch},
  title        = {TripleA: Accelerated accuracy-preserving alignment for iris-codes},
  booktitle    = {International Conference on Biometrics, {ICB} 2016, Halmstad, Sweden,
                  June 13-16, 2016},
  pages        = {1--8},
  publisher    = {{IEEE}},
  year         = {2016},
  url          = {https://doi.org/10.1109/ICB.2016.7550063},
  doi          = {10.1109/ICB.2016.7550063},
  timestamp    = {Tue, 05 Jan 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/icb/RathgebHUB16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/16/WuRLBB16,
  author       = {Thomas D. Wu and
                  Jens Reeder and
                  Michael Lawrence and
                  Gabe Becker and
                  Matthew J. Brauer},
  editor       = {Ewy A Math{\'{e}} and
                  Sean R. Davis},
  title        = {{GMAP} and {GSNAP} for Genomic Sequence Alignment: Enhancements to
                  Speed, Accuracy, and Functionality},
  booktitle    = {Statistical Genomics - Methods and Protocols},
  series       = {Methods in Molecular Biology},
  volume       = {1418},
  pages        = {283--334},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-1-4939-3578-9\_15},
  doi          = {10.1007/978-1-4939-3578-9\_15},
  timestamp    = {Fri, 15 Mar 2024 13:51:10 +0100},
  biburl       = {https://dblp.org/rec/books/sp/16/WuRLBB16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VijayanSM15,
  author       = {Vipin Vijayan and
                  Vikram Saraph and
                  Tijana Milenkovic},
  title        = {{MAGNA++:} Maximizing Accuracy in Global Network Alignment via both
                  node and edge conservation},
  journal      = {Bioinform.},
  volume       = {31},
  number       = {14},
  pages        = {2409--2411},
  year         = {2015},
  url          = {https://doi.org/10.1093/bioinformatics/btv161},
  doi          = {10.1093/BIOINFORMATICS/BTV161},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/VijayanSM15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emnlp/Eger15,
  author       = {Steffen Eger},
  editor       = {Llu{\'{\i}}s M{\`{a}}rquez and
                  Chris Callison{-}Burch and
                  Jian Su and
                  Daniele Pighin and
                  Yuval Marton},
  title        = {Do we need bigram alignment models? On the effect of alignment quality
                  on transduction accuracy in {G2P}},
  booktitle    = {Proceedings of the 2015 Conference on Empirical Methods in Natural
                  Language Processing, {EMNLP} 2015, Lisbon, Portugal, September 17-21,
                  2015},
  pages        = {1175--1185},
  publisher    = {The Association for Computational Linguistics},
  year         = {2015},
  url          = {https://doi.org/10.18653/v1/d15-1139},
  doi          = {10.18653/V1/D15-1139},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/emnlp/Eger15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nems/KondoMLM15,
  author       = {Masahiro Kondo and
                  Hidetoshi Miyashita and
                  Sang{-}Seok Lee and
                  Nobuo Matsuoka},
  title        = {Tentative bonding effect for maintaining alignment accuracy in bonding
                  utilizing thick {SU8} as an adhesive material},
  booktitle    = {10th {IEEE} International Conference on Nano/Micro Engineered and
                  Molecular Systems, {NEMS} 2015, Xi'an, China, April 7-11, 2015},
  pages        = {487--490},
  publisher    = {{IEEE}},
  year         = {2015},
  url          = {https://doi.org/10.1109/NEMS.2015.7147474},
  doi          = {10.1109/NEMS.2015.7147474},
  timestamp    = {Wed, 16 Oct 2019 14:14:49 +0200},
  biburl       = {https://dblp.org/rec/conf/nems/KondoMLM15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SaraphM14,
  author       = {Vikram Saraph and
                  Tijana Milenkovic},
  title        = {{MAGNA:} Maximizing Accuracy in Global Network Alignment},
  journal      = {Bioinform.},
  volume       = {30},
  number       = {20},
  pages        = {2931--2940},
  year         = {2014},
  url          = {https://doi.org/10.1093/bioinformatics/btu409},
  doi          = {10.1093/BIOINFORMATICS/BTU409},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SaraphM14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/KawabataN14,
  author       = {Takeshi Kawabata and
                  Haruki Nakamura},
  title        = {3D Flexible Alignment Using 2D Maximum Common Substructure: Dependence
                  of Prediction Accuracy on Target-Reference Chemical Similarity},
  journal      = {J. Chem. Inf. Model.},
  volume       = {54},
  number       = {7},
  pages        = {1850--1863},
  year         = {2014},
  url          = {https://doi.org/10.1021/ci500006d},
  doi          = {10.1021/CI500006D},
  timestamp    = {Fri, 06 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/KawabataN14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tim/LamonacaGM14,
  author       = {Francesco Lamonaca and
                  Domenico Grimaldi and
                  Rosario Morello},
  title        = {Dynamic Scheduling of Trigger Command for Sub-Microsecond Alignment
                  Accuracy in Distributed Measurement System},
  journal      = {{IEEE} Trans. Instrum. Meas.},
  volume       = {63},
  number       = {7},
  pages        = {1795--1803},
  year         = {2014},
  url          = {https://doi.org/10.1109/TIM.2014.2299526},
  doi          = {10.1109/TIM.2014.2299526},
  timestamp    = {Mon, 08 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tim/LamonacaGM14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ITGspeech/HeckmannMK14,
  author       = {Martin Heckmann and
                  Paschalis Mikias and
                  Dorothea Kolossa},
  title        = {The Impact of Word Alignment Accuracy on Audio-visual Word Prominence
                  Detection},
  booktitle    = {Proceedings of the 11th {ITG} Symposium on Speech Communication, Erlangen,
                  Germany, September 24-26, 2014},
  pages        = {1--4},
  publisher    = {{IEEE}},
  year         = {2014},
  url          = {https://ieeexplore.ieee.org/document/6926049/},
  timestamp    = {Wed, 11 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ITGspeech/HeckmannMK14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icuimc/SeoTC14,
  author       = {Jongkyu Seo and
                  Haesung Tak and
                  Hwan{-}Gue Cho},
  editor       = {Suk{-}Han Lee and
                  Sang{-}Wook Kim and
                  Lajos Hanzo and
                  Roslan Ismail},
  title        = {Multi-level sequence alignment: a trade-off between speed and accuracy
                  in similar text searching},
  booktitle    = {The 8th International Conference on Ubiquitous Information Management
                  and Communication, {ICUIMC} '14, Siem Reap, Cambodia - January 09
                  - 11, 2014},
  pages        = {73:1--73:8},
  publisher    = {{ACM}},
  year         = {2014},
  url          = {https://doi.org/10.1145/2557977.2558053},
  doi          = {10.1145/2557977.2558053},
  timestamp    = {Thu, 23 May 2019 16:33:14 +0200},
  biburl       = {https://dblp.org/rec/conf/icuimc/SeoTC14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/basesearch/Li13h,
  author       = {Yaoman Li},
  title        = {Efficient methods for improving the sensitivity and accuracy of {RNA}
                  alignments and structure prediction},
  school       = {University of Hong Kong, Pokfulam, Hong Kong},
  year         = {2013},
  url          = {https://doi.org/10.5353/th\_b5153733},
  doi          = {10.5353/TH\_B5153733},
  timestamp    = {Wed, 04 May 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/phd/basesearch/Li13h.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HongCCHCCSCJ13,
  author       = {Changjin Hong and
                  Nathan L. Clement and
                  Spencer Clement and
                  Saher Sue Hammoud and
                  Douglas T. Carrell and
                  Bradley R. Cairns and
                  Quinn Snell and
                  Mark J. Clement and
                  William Evan Johnson},
  title        = {Probabilistic alignment leads to improved accuracy and read coverage
                  for bisulfite sequencing data},
  journal      = {{BMC} Bioinform.},
  volume       = {14},
  pages        = {337},
  year         = {2013},
  url          = {https://doi.org/10.1186/1471-2105-14-337},
  doi          = {10.1186/1471-2105-14-337},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/HongCCHCCSCJ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmic/WuQC13,
  author       = {Wei Wu and
                  Shiqiao Qin and
                  Sheng Chen},
  title        = {Coupling influence of ship dynamic flexure on high accuracy transfer
                  alignment},
  journal      = {Int. J. Model. Identif. Control.},
  volume       = {19},
  number       = {3},
  pages        = {224--234},
  year         = {2013},
  url          = {https://doi.org/10.1504/IJMIC.2013.055429},
  doi          = {10.1504/IJMIC.2013.055429},
  timestamp    = {Thu, 17 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ijmic/WuQC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KececiogluD13,
  author       = {John D. Kececioglu and
                  Dan F. DeBlasio},
  title        = {Accuracy Estimation and Parameter Advising for Protein Multiple Sequence
                  Alignment},
  journal      = {J. Comput. Biol.},
  volume       = {20},
  number       = {4},
  pages        = {259--279},
  year         = {2013},
  url          = {https://doi.org/10.1089/cmb.2013.0007},
  doi          = {10.1089/CMB.2013.0007},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/KececiogluD13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tbe/HughesRMSP13,
  author       = {Cecilia Hughes and
                  Olivier Rouvi{\`{e}}re and
                  Florence Mege{-}Lechevallier and
                  R{\'{e}}mi Souchon and
                  R{\'{e}}my Prost},
  title        = {Robust Alignment of Prostate Histology Slices With Quantified Accuracy},
  journal      = {{IEEE} Trans. Biomed. Eng.},
  volume       = {60},
  number       = {2},
  pages        = {281--291},
  year         = {2013},
  url          = {https://doi.org/10.1109/TBME.2012.2225835},
  doi          = {10.1109/TBME.2012.2225835},
  timestamp    = {Wed, 02 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tbe/HughesRMSP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tjs/OrobitgCGRN13,
  author       = {Miquel Orobitg and
                  Fernando Cores and
                  Fernando Guirado and
                  Concepci{\'{o}} Roig and
                  C{\'{e}}dric Notredame},
  title        = {Improving multiple sequence alignment biological accuracy through
                  genetic algorithms},
  journal      = {J. Supercomput.},
  volume       = {65},
  number       = {3},
  pages        = {1076--1088},
  year         = {2013},
  url          = {https://doi.org/10.1007/s11227-012-0856-9},
  doi          = {10.1007/S11227-012-0856-9},
  timestamp    = {Fri, 22 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tjs/OrobitgCGRN13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pvm/OrobitgLGCN13,
  author       = {Miquel Orobitg and
                  Jordi Llad{\'{o}}s and
                  Fernando Guirado and
                  Fernando Cores and
                  C{\'{e}}dric Notredame},
  editor       = {Jack J. Dongarra and
                  Javier Garc{\'{\i}}a Blas and
                  Jes{\'{u}}s Carretero},
  title        = {Scalability and accuracy improvements of consistency-based multiple
                  sequence alignment tools},
  booktitle    = {20th European {MPI} Users's Group Meeting, EuroMPI '13, Madrid, Spain
                  - September 15 - 18, 2013},
  pages        = {259--264},
  publisher    = {{ACM}},
  year         = {2013},
  url          = {https://doi.org/10.1145/2488551.2488583},
  doi          = {10.1145/2488551.2488583},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/pvm/OrobitgLGCN13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/KuljusL13,
  author       = {Kristi Kuljus and
                  J{\"{u}}ri Lember},
  title        = {On the accuracy of the Viterbi alignment},
  journal      = {CoRR},
  volume       = {abs/1307.7948},
  year         = {2013},
  url          = {http://arxiv.org/abs/1307.7948},
  eprinttype    = {arXiv},
  eprint       = {1307.7948},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/KuljusL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/ChenMCC12,
  author       = {Tung{-}Chien Chen and
                  Tsung{-}Chuan Ma and
                  Yun{-}Yu Chen and
                  Liang{-}Gee Chen},
  title        = {Low power and high accuracy spike sorting microprocessor with on-line
                  interpolation and re-alignment in 90nm {CMOS} process},
  booktitle    = {Annual International Conference of the {IEEE} Engineering in Medicine
                  and Biology Society, {EMBC} 2012, San Diego, CA, USA, August 28 -
                  September 1, 2012},
  pages        = {4485--4488},
  publisher    = {{IEEE}},
  year         = {2012},
  url          = {https://doi.org/10.1109/EMBC.2012.6346963},
  doi          = {10.1109/EMBC.2012.6346963},
  timestamp    = {Wed, 16 Oct 2019 14:14:50 +0200},
  biburl       = {https://dblp.org/rec/conf/embc/ChenMCC12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icassp/OgawaHN12,
  author       = {Atsunori Ogawa and
                  Takaaki Hori and
                  Atsushi Nakamura},
  title        = {Error type classification and word accuracy estimation using alignment
                  features from word confusion network},
  booktitle    = {2012 {IEEE} International Conference on Acoustics, Speech and Signal
                  Processing, {ICASSP} 2012, Kyoto, Japan, March 25-30, 2012},
  pages        = {4925--4928},
  publisher    = {{IEEE}},
  year         = {2012},
  url          = {https://doi.org/10.1109/ICASSP.2012.6289024},
  doi          = {10.1109/ICASSP.2012.6289024},
  timestamp    = {Wed, 16 Oct 2019 14:14:52 +0200},
  biburl       = {https://dblp.org/rec/conf/icassp/OgawaHN12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/micai/AlbaAGS12,
  author       = {Alfonso Alba and
                  Ruth Aguilar{-}Ponce and
                  Javier{-}Flavio Vigueras G{\'{o}}mez and
                  Edgar Arce Santana},
  editor       = {Ildar Z. Batyrshin and
                  Miguel Gonz{\'{a}}lez{-}Mendoza},
  title        = {Phase Correlation Based Image Alignment with Subpixel Accuracy},
  booktitle    = {Advances in Artificial Intelligence - 11th Mexican International Conference
                  on Artificial Intelligence, {MICAI} 2012, San Luis Potos{\'{\i}},
                  Mexico, October 27 - November 4, 2012. Revised Selected Papers, Part
                  {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {7629},
  pages        = {171--182},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-3-642-37807-2\_15},
  doi          = {10.1007/978-3-642-37807-2\_15},
  timestamp    = {Wed, 04 May 2022 08:39:24 +0200},
  biburl       = {https://dblp.org/rec/conf/micai/AlbaAGS12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/HughesRMSP12,
  author       = {Cecilia Hughes and
                  Olivier Rouvi{\`{e}}re and
                  Florence Mege{-}Lechevallier and
                  R{\'{e}}mi Souchon and
                  R{\'{e}}my Prost},
  editor       = {David R. Haynor and
                  S{\'{e}}bastien Ourselin},
  title        = {Robust alignment of prostate histology slices with quantified accuracy},
  booktitle    = {Medical Imaging 2012: Image Processing, San Diego, California, USA,
                  February 4, 2012},
  series       = {{SPIE} Proceedings},
  volume       = {8314},
  pages        = {83141N},
  publisher    = {{SPIE}},
  year         = {2012},
  url          = {https://doi.org/10.1117/12.911257},
  doi          = {10.1117/12.911257},
  timestamp    = {Sun, 04 Jun 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miip/HughesRMSP12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DeBlasioWK12,
  author       = {Dan F. DeBlasio and
                  Travis J. Wheeler and
                  John D. Kececioglu},
  editor       = {Benny Chor},
  title        = {Estimating the Accuracy of Multiple Alignments and its Use in Parameter
                  Advising},
  booktitle    = {Research in Computational Molecular Biology - 16th Annual International
                  Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {7262},
  pages        = {45--59},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-3-642-29627-7\_5},
  doi          = {10.1007/978-3-642-29627-7\_5},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/DeBlasioWK12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MengesNM11,
  author       = {Fabian Menges and
                  Giuseppe Narzisi and
                  Bud Mishra},
  title        = {TotalReCaller: improved accuracy and performance via integrated alignment
                  and base-calling},
  journal      = {Bioinform.},
  volume       = {27},
  number       = {17},
  pages        = {2330--2337},
  year         = {2011},
  url          = {https://doi.org/10.1093/bioinformatics/btr393},
  doi          = {10.1093/BIOINFORMATICS/BTR393},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MengesNM11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MirarabW11,
  author       = {Siavash Mirarab and
                  Tandy J. Warnow},
  title        = {{FASTSP:} linear time calculation of alignment accuracy},
  journal      = {Bioinform.},
  volume       = {27},
  number       = {23},
  pages        = {3250--3258},
  year         = {2011},
  url          = {https://doi.org/10.1093/bioinformatics/btr553},
  doi          = {10.1093/BIOINFORMATICS/BTR553},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MirarabW11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/iajit/SalamehZM11,
  author       = {Mohammad Salameh and
                  Rached Zantout and
                  Nashat Mansour},
  title        = {Improving the accuracy of English-Arabic statistical sentence alignment},
  journal      = {Int. Arab J. Inf. Technol.},
  volume       = {8},
  number       = {2},
  pages        = {171--177},
  year         = {2011},
  url          = {http://iajit.org/index.php?option=com\_content\&task=view\&id=524\&Itemid=305},
  timestamp    = {Thu, 16 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/iajit/SalamehZM11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SahraeianY11,
  author       = {Sayed Mohammad Ebrahim Sahraeian and
                  Byung{-}Jun Yoon},
  title        = {PicXAA-Web: a web-based platform for non-progressive maximum expected
                  accuracy alignment of multiple biological sequences},
  journal      = {Nucleic Acids Res.},
  volume       = {39},
  number       = {Web-Server-Issue},
  pages        = {8--12},
  year         = {2011},
  url          = {https://doi.org/10.1093/nar/gkr244},
  doi          = {10.1093/NAR/GKR244},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/SahraeianY11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/otm/ChowdhuryD11,
  author       = {Nafisa Afrin Chowdhury and
                  Dejing Dou},
  editor       = {Robert Meersman and
                  Tharam S. Dillon and
                  Pilar Herrero and
                  Akhil Kumar and
                  Manfred Reichert and
                  Li Qing and
                  Beng Chin Ooi and
                  Ernesto Damiani and
                  Douglas C. Schmidt and
                  Jules White and
                  Manfred Hauswirth and
                  Pascal Hitzler and
                  Mukesh K. Mohania},
  title        = {Improving the Accuracy of Ontology Alignment through Ensemble Fuzzy
                  Clustering},
  booktitle    = {On the Move to Meaningful Internet Systems: {OTM} 2011 - Confederated
                  International Conferences: CoopIS, DOA-SVI, and {ODBASE} 2011, Hersonissos,
                  Crete, Greece, October 17-21, 2011, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {7045},
  pages        = {826--833},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-25106-1\_30},
  doi          = {10.1007/978-3-642-25106-1\_30},
  timestamp    = {Thu, 14 Oct 2021 10:28:28 +0200},
  biburl       = {https://dblp.org/rec/conf/otm/ChowdhuryD11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/basesearch/Hudek10,
  author       = {Alexander K. Hudek},
  title        = {Improvements in the Accuracy of Pairwise Genomic Alignment},
  school       = {University of Waterloo, Ontario, Canada},
  year         = {2010},
  url          = {https://hdl.handle.net/10012/5074},
  timestamp    = {Wed, 04 May 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/phd/basesearch/Hudek10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SierkSBP10,
  author       = {Michael L. Sierk and
                  Michael E. Smoot and
                  Ellen J. Bass and
                  William R. Pearson},
  title        = {Improving pairwise sequence alignment accuracy using near-optimal
                  protein sequence alignments},
  journal      = {{BMC} Bioinform.},
  volume       = {11},
  pages        = {146},
  year         = {2010},
  url          = {https://doi.org/10.1186/1471-2105-11-146},
  doi          = {10.1186/1471-2105-11-146},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/SierkSBP10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/WolberSB10,
  author       = {Gerhard Wolber and
                  Thomas Seidel and
                  Fabian Bendix},
  title        = {3D pharmacophore alignments: does improved geometric accuracy affect
                  virtual screening performance?},
  journal      = {J. Cheminformatics},
  volume       = {2},
  number       = {{S-1}},
  pages        = {10},
  year         = {2010},
  url          = {https://doi.org/10.1186/1758-2946-2-S1-O10},
  doi          = {10.1186/1758-2946-2-S1-O10},
  timestamp    = {Thu, 14 Feb 2019 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcheminf/WolberSB10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/3dic/FukushimaIBMLTK10,
  author       = {Takafumi Fukushima and
                  Eiji Iwata and
                  Jichoel Bea and
                  Mariappan Murugesan and
                  Kang Wook Lee and
                  Tetsu Tanaka and
                  Mitsumasa Koyanagi},
  title        = {Evaluation of alignment accuracy on chip-to-wafer self-assembly and
                  mechanism on the direct chip bonding at room temperature},
  booktitle    = {{IEEE} International Conference on 3D System Integration, 3DIC 2010,
                  Munich, Germany, 16-18 November 2010},
  pages        = {1--5},
  publisher    = {{IEEE}},
  year         = {2010},
  url          = {https://doi.org/10.1109/3DIC.2010.5751436},
  doi          = {10.1109/3DIC.2010.5751436},
  timestamp    = {Tue, 16 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/3dic/FukushimaIBMLTK10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/imt/YamadaGY09,
  author       = {Shinsuke Yamada and
                  Osamu Gotoh and
                  Hayato Yamana},
  title        = {Improvement in Speed and Accuracy of Multiple Sequence Alignment Program
                  {PRIME}},
  journal      = {Inf. Media Technol.},
  volume       = {4},
  number       = {2},
  pages        = {317--327},
  year         = {2009},
  url          = {https://doi.org/10.11185/imt.4.317},
  doi          = {10.11185/IMT.4.317},
  timestamp    = {Thu, 05 Sep 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/imt/YamadaGY09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuNRLW09,
  author       = {Kevin Liu and
                  Serita M. Nelesen and
                  Sindhu Raghavan and
                  C. Randal Linder and
                  Tandy J. Warnow},
  title        = {Barking Up The Wrong Treelength: The Impact of Gap Penalty on Alignment
                  and Tree Accuracy},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {6},
  number       = {1},
  pages        = {7--21},
  year         = {2009},
  url          = {https://doi.org/10.1109/TCBB.2008.63},
  doi          = {10.1109/TCBB.2008.63},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/LiuNRLW09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismir/Niedermayer09,
  author       = {Bernhard Niedermayer},
  editor       = {Keiji Hirata and
                  George Tzanetakis and
                  Kazuyoshi Yoshii},
  title        = {Improving Accuracy of Polyphonic Music-to-Score Alignment},
  booktitle    = {Proceedings of the 10th International Society for Music Information
                  Retrieval Conference, {ISMIR} 2009, Kobe International Conference
                  Center, Kobe, Japan, October 26-30, 2009},
  pages        = {585--590},
  publisher    = {International Society for Music Information Retrieval},
  year         = {2009},
  url          = {http://ismir2009.ismir.net/proceedings/PS4-2.pdf},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismir/Niedermayer09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PoleksicF08,
  author       = {Aleksandar Poleksic and
                  Mark A. Fienup},
  title        = {Optimizing the size of the sequence profiles to increase the accuracy
                  of protein sequence alignments generated by profile-profile algorithms},
  journal      = {Bioinform.},
  volume       = {24},
  number       = {9},
  pages        = {1145--1153},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn097},
  doi          = {10.1093/BIOINFORMATICS/BTN097},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PoleksicF08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KatohT08,
  author       = {Kazutaka Katoh and
                  Hiroyuki Toh},
  title        = {Improved accuracy of multiple ncRNA alignment by incorporating structural
                  information into a MAFFT-based framework},
  journal      = {{BMC} Bioinform.},
  volume       = {9},
  year         = {2008},
  url          = {https://doi.org/10.1186/1471-2105-9-212},
  doi          = {10.1186/1471-2105-9-212},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/KatohT08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhengK08,
  author       = {Ce Zheng and
                  Lukasz A. Kurgan},
  title        = {Prediction of beta-turns at over 80{\%} accuracy based on an ensemble
                  of predicted secondary structures and multiple alignments},
  journal      = {{BMC} Bioinform.},
  volume       = {9},
  year         = {2008},
  url          = {https://doi.org/10.1186/1471-2105-9-430},
  doi          = {10.1186/1471-2105-9-430},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/ZhengK08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/rose/WenC08,
  author       = {Chun{-}Ming Wen and
                  Ming{-}Yang Cheng},
  title        = {Positioning accuracy improvement of a vision-based optical fiber alignment
                  stage powered by a Piezo-Actuator},
  booktitle    = {2008 International Workshop on Robotic and Sensors Environments, {ROSE}
                  2008, Ottawa, Ontario, Canada, October 17-18, 2008},
  pages        = {70--75},
  publisher    = {{IEEE}},
  year         = {2008},
  url          = {https://doi.org/10.1109/ROSE.2008.4669183},
  doi          = {10.1109/ROSE.2008.4669183},
  timestamp    = {Wed, 16 Oct 2019 14:14:52 +0200},
  biburl       = {https://dblp.org/rec/conf/rose/WenC08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimL07a,
  author       = {Changhoon Kim and
                  Byungkook Lee},
  title        = {Accuracy of structure-based sequence alignment of automatic methods},
  journal      = {{BMC} Bioinform.},
  volume       = {8},
  year         = {2007},
  url          = {https://doi.org/10.1186/1471-2105-8-355},
  doi          = {10.1186/1471-2105-8-355},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/KimL07a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmg/Buzen07,
  author       = {Jeffrey P. Buzen},
  title        = {Improving Simulation Accuracy through the use of Synthetic Alignment
                  Intervals},
  booktitle    = {33rd International Computer Measurement Group Conference, December
                  2-7, 2007, San Diego, CA, USA, Proceedings},
  pages        = {147--158},
  publisher    = {Computer Measurement Group},
  year         = {2007},
  url          = {http://www.cmg.org/?s2member\_file\_download=/proceedings/2007/7100.pdf},
  timestamp    = {Wed, 17 Jul 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cmg/Buzen07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icnc/HuoS07,
  author       = {Hongwei Huo and
                  Vojislav Stojkovic},
  editor       = {Jingsheng Lei and
                  JingTao Yao and
                  Qingfu Zhang},
  title        = {A simulated annealing algorithm for multiple sequence alignment with
                  guaranteed accuracy},
  booktitle    = {Third International Conference on Natural Computation, {ICNC} 2007,
                  Haikou, Hainan, China, 24-27 August 2007, Volume 2},
  pages        = {270--274},
  publisher    = {{IEEE} Computer Society},
  year         = {2007},
  url          = {https://doi.org/10.1109/ICNC.2007.139},
  doi          = {10.1109/ICNC.2007.139},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/icnc/HuoS07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/PhilpsA07,
  author       = {Elizabeth B. Philps and
                  Sarah J. Aivano},
  editor       = {Josien P. W. Pluim and
                  Joseph M. Reinhardt},
  title        = {Evaluation of accuracy and workflow between different alignment techniques
                  for correction of {CTAC} and {PET} misalignment in cardiac {PET-CT}
                  imaging},
  booktitle    = {Medical Imaging 2007: Image Processing, San Diego, CA, United States,
                  17-22 February 2007},
  series       = {{SPIE} Proceedings},
  volume       = {6512},
  pages        = {65124J},
  publisher    = {{SPIE}},
  year         = {2007},
  url          = {https://doi.org/10.1117/12.713599},
  doi          = {10.1117/12.713599},
  timestamp    = {Wed, 23 May 2018 13:19:32 +0200},
  biburl       = {https://dblp.org/rec/conf/miip/PhilpsA07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArmougomPMHBKN06,
  author       = {Fabrice Armougom and
                  Olivier Poirot and
                  S{\'{e}}bastien Moretti and
                  Desmond G. Higgins and
                  Phillip Bucher and
                  Vladimir Keduas and
                  C{\'{e}}dric Notredame},
  title        = {{APDB:} a web server to evaluate the accuracy of sequence alignments
                  using structural information},
  journal      = {Bioinform.},
  volume       = {22},
  number       = {19},
  pages        = {2439--2440},
  year         = {2006},
  url          = {https://doi.org/10.1093/bioinformatics/btl404},
  doi          = {10.1093/BIOINFORMATICS/BTL404},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ArmougomPMHBKN06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Cartwright06,
  author       = {Reed A. Cartwright},
  title        = {Logarithmic gap costs decrease alignment accuracy},
  journal      = {{BMC} Bioinform.},
  volume       = {7},
  pages        = {527},
  year         = {2006},
  url          = {https://doi.org/10.1186/1471-2105-7-527},
  doi          = {10.1186/1471-2105-7-527},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/Cartwright06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MontgomerieSGW06,
  author       = {Scott Montgomerie and
                  Shan Sundararaj and
                  Warren J. Gallin and
                  David S. Wishart},
  title        = {Improving the accuracy of protein secondary structure prediction using
                  structural alignment},
  journal      = {{BMC} Bioinform.},
  volume       = {7},
  pages        = {301},
  year         = {2006},
  url          = {https://doi.org/10.1186/1471-2105-7-301},
  doi          = {10.1186/1471-2105-7-301},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/MontgomerieSGW06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NuinWT06,
  author       = {Paulo A. S. Nuin and
                  Zhouzhi Wang and
                  Elisabeth R. M. Tillier},
  title        = {The accuracy of several multiple sequence alignment programs for proteins},
  journal      = {{BMC} Bioinform.},
  volume       = {7},
  pages        = {471},
  year         = {2006},
  url          = {https://doi.org/10.1186/1471-2105-7-471},
  doi          = {10.1186/1471-2105-7-471},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/NuinWT06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YamadaGY06,
  author       = {Shinsuke Yamada and
                  Osamu Gotoh and
                  Hayato Yamana},
  title        = {Improvement in accuracy of multiple sequence alignment using novel
                  group-to-group sequence alignment algorithm with piecewise linear
                  gap cost},
  journal      = {{BMC} Bioinform.},
  volume       = {7},
  pages        = {524},
  year         = {2006},
  url          = {https://doi.org/10.1186/1471-2105-7-524},
  doi          = {10.1186/1471-2105-7-524},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/YamadaGY06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/ArmougomMKN06,
  author       = {Fabrice Armougom and
                  S{\'{e}}bastien Moretti and
                  Vladimir Keduas and
                  C{\'{e}}dric Notredame},
  title        = {The iRMSD: a local measure of sequence alignment accuracy using structural
                  information},
  booktitle    = {Proceedings 14th International Conference on Intelligent Systems for
                  Molecular Biology 2006, Fortaleza, Brazil, August 6-10, 2006},
  pages        = {35--39},
  year         = {2006},
  url          = {https://doi.org/10.1093/bioinformatics/btl218},
  doi          = {10.1093/BIOINFORMATICS/BTL218},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/ArmougomMKN06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Rosenberg05a,
  author       = {Michael S. Rosenberg},
  title        = {Multiple sequence alignment accuracy and evolutionary distance estimation},
  journal      = {{BMC} Bioinform.},
  volume       = {6},
  pages        = {278},
  year         = {2005},
  url          = {https://doi.org/10.1186/1471-2105-6-278},
  doi          = {10.1186/1471-2105-6-278},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/Rosenberg05a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/Xu05,
  author       = {Jinbo Xu},
  title        = {Fold Recognition by Predicted Alignment Accuracy},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {2},
  number       = {2},
  pages        = {157--165},
  year         = {2005},
  url          = {https://doi.org/10.1109/TCBB.2005.24},
  doi          = {10.1109/TCBB.2005.24},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/Xu05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChakrabartiBAS04,
  author       = {Saikat Chakrabarti and
                  Nitin Bhardwaj and
                  Prem A. Anand and
                  Ramanathan Sowdhamini},
  title        = {Improvement of alignment accuracy utilizing sequentially conserved
                  motifs},
  journal      = {{BMC} Bioinform.},
  volume       = {5},
  pages        = {167},
  year         = {2004},
  url          = {https://doi.org/10.1186/1471-2105-5-167},
  doi          = {10.1186/1471-2105-5-167},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/ChakrabartiBAS04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/Edgar04,
  author       = {Robert C. Edgar},
  title        = {{MUSCLE:} Multiple Sequence Alignment with Improved Accuracy and Speed},
  booktitle    = {3rd International {IEEE} Computer Society Computational Systems Bioinformatics
                  Conference, {CSB} 2004, Stanford, CA, USA, August 16-19, 2004},
  pages        = {728--729},
  publisher    = {{IEEE} Computer Society},
  year         = {2004},
  url          = {https://doi.org/10.1109/CSB.2004.1332560},
  doi          = {10.1109/CSB.2004.1332560},
  timestamp    = {Thu, 23 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/csb/Edgar04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icba/ZhaoGSY04,
  author       = {Sanqiang Zhao and
                  Wen Gao and
                  Shiguang Shan and
                  Baocai Yin},
  editor       = {David Zhang and
                  Anil K. Jain},
  title        = {Enhance the Alignment Accuracy of Active Shape Models Using Elastic
                  Graph Matching},
  booktitle    = {Biometric Authentication, First International Conference, {ICBA} 2004,
                  Hong Kong, China, July 15-17, 2004, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {3072},
  pages        = {52--58},
  publisher    = {Springer},
  year         = {2004},
  url          = {https://doi.org/10.1007/978-3-540-25948-0\_8},
  doi          = {10.1007/978-3-540-25948-0\_8},
  timestamp    = {Tue, 14 May 2019 10:00:53 +0200},
  biburl       = {https://dblp.org/rec/conf/icba/ZhaoGSY04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/ChenLHMM04,
  author       = {Lei Chen and
                  Yang Liu and
                  Mary P. Harper and
                  Eduardo Maia and
                  Susan McRoy},
  title        = {Evaluating Factors Impacting the Accuracy of Forced Alignments in
                  a Multimodal Corpus},
  booktitle    = {Proceedings of the Fourth International Conference on Language Resources
                  and Evaluation, {LREC} 2004, May 26-28, 2004, Lisbon, Portugal},
  publisher    = {European Language Resources Association},
  year         = {2004},
  url          = {http://www.lrec-conf.org/proceedings/lrec2004/summaries/307.htm},
  timestamp    = {Mon, 19 Aug 2019 15:22:43 +0200},
  biburl       = {https://dblp.org/rec/conf/lrec/ChenLHMM04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/ndltd/Chen03,
  author       = {Carl Gang Chen},
  title        = {Beam alignment and image metrology for scanning beam interference
                  lithography: fabricating gratings with nanometer phase accuracy},
  school       = {Massachusetts Institute of Technology, Cambridge, MA, {USA}},
  year         = {2003},
  url          = {https://hdl.handle.net/1721.1/16950},
  timestamp    = {Wed, 04 May 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/phd/ndltd/Chen03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RaghavaSABB03,
  author       = {G. P. S. Raghava and
                  Stephen M. J. Searle and
                  Patrick C. Audley and
                  Jonathan D. Barber and
                  Geoffrey J. Barton},
  title        = {OXBench: {A} benchmark for evaluation of protein multiple sequence
                  alignment accuracy},
  journal      = {{BMC} Bioinform.},
  volume       = {4},
  pages        = {47},
  year         = {2003},
  url          = {https://doi.org/10.1186/1471-2105-4-47},
  doi          = {10.1186/1471-2105-4-47},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/RaghavaSABB03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/propor/PauloO03,
  author       = {S{\'{e}}rgio Paulo and
                  Lu{\'{\i}}s C. Oliveira},
  editor       = {Nuno J. Mamede and
                  Jorge Baptista and
                  Isabel Trancoso and
                  Maria das Gra{\c{c}}as Volpe Nunes},
  title        = {Improving the Accuracy of the Speech Synthesis Based Phonetic Alignment
                  Using Multiple Acoustic Features},
  booktitle    = {Computational Processing of the Portuguese Language, 6th International
                  Workshop, {PROPOR} 2003, Faro, Portugal, June 26-27, 2003. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {2721},
  pages        = {31--39},
  publisher    = {Springer},
  year         = {2003},
  url          = {https://doi.org/10.1007/3-540-45011-4\_5},
  doi          = {10.1007/3-540-45011-4\_5},
  timestamp    = {Fri, 27 Mar 2020 09:00:22 +0100},
  biburl       = {https://dblp.org/rec/conf/propor/PauloO03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Griffiths-JonesB02,
  author       = {Sam Griffiths{-}Jones and
                  Alex Bateman},
  title        = {The use of structure information to increase alignment accuracy does
                  not aid homologue detection with profile HMMs},
  journal      = {Bioinform.},
  volume       = {18},
  number       = {9},
  pages        = {1243--1249},
  year         = {2002},
  url          = {https://doi.org/10.1093/bioinformatics/18.9.1243},
  doi          = {10.1093/BIOINFORMATICS/18.9.1243},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Griffiths-JonesB02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KahsayWDGD02,
  author       = {Robel Y. Kahsay and
                  Guoli Wang and
                  Nataraj Dongre and
                  Guang R. Gao and
                  Roland L. Dunbrack Jr.},
  title        = {{CASA:} a server for the critical assessment of protein sequence alignment
                  accuracy},
  journal      = {Bioinform.},
  volume       = {18},
  number       = {3},
  pages        = {496--497},
  year         = {2002},
  url          = {https://doi.org/10.1093/bioinformatics/18.3.496},
  doi          = {10.1093/BIOINFORMATICS/18.3.496},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KahsayWDGD02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/Sippl00,
  author       = {Wolfgang Sippl},
  title        = {Receptor-based 3D {QSAR} analysis of estrogen receptor ligands - merging
                  the accuracy of receptor-based alignments with the computational efficiency
                  of ligand-based methods},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {14},
  number       = {6},
  pages        = {559--572},
  year         = {2000},
  url          = {https://doi.org/10.1023/A:1008115913787},
  doi          = {10.1023/A:1008115913787},
  timestamp    = {Thu, 16 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/Sippl00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HolmesD98,
  author       = {Ian Holmes and
                  Richard Durbin},
  title        = {Dynamic Programming Alignment Accuracy},
  journal      = {J. Comput. Biol.},
  volume       = {5},
  number       = {3},
  pages        = {493--504},
  year         = {1998},
  url          = {https://doi.org/10.1089/cmb.1998.5.493},
  doi          = {10.1089/CMB.1998.5.493},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/HolmesD98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mt/SimardP98,
  author       = {Michel Simard and
                  Pierre Plamondon},
  title        = {Bilingual Sentence Alignment: Balancing Robustness and Accuracy},
  journal      = {Mach. Transl.},
  volume       = {13},
  number       = {1},
  pages        = {59--80},
  year         = {1998},
  url          = {https://doi.org/10.1023/A:1008010319408},
  doi          = {10.1023/A:1008010319408},
  timestamp    = {Tue, 24 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/mt/SimardP98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HolmesD98,
  author       = {Ian Holmes and
                  Richard Durbin},
  editor       = {Sorin Istrail and
                  Pavel A. Pevzner and
                  Michael S. Waterman},
  title        = {Dynamic programming alignment accuracy},
  booktitle    = {Proceedings of the Second Annual International Conference on Research
                  in Computational Molecular Biology, {RECOMB} 1998, New York, NY, USA,
                  March 22-25, 1998},
  pages        = {102--108},
  publisher    = {{ACM}},
  year         = {1998},
  url          = {https://doi.org/10.1145/279069.279102},
  doi          = {10.1145/279069.279102},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/HolmesD98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amta/SimardP96,
  author       = {Michel Simard and
                  Pierre Plamondon},
  title        = {Bilingual sentence alignment: balancing robustness and accuracy},
  booktitle    = {Conference of the Association for Machine Translation in the Americas,
                  {AMTA} 1996, Montreal, Canada, October 2-5, 1996},
  year         = {1996},
  url          = {https://aclanthology.org/1996.amta-1.14/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/amta/SimardP96.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/wsscs/GauthierLMBL89,
  author       = {David Gauthier and
                  Martin D. Levine and
                  Alfred S. Malowany and
                  N. Begnoche and
                  G. Lefebvre},
  editor       = {Adam Krzyzak and
                  Tony Kasvand and
                  Ching Y. Suen},
  title        = {Measuring the Alignment accuracy of Surface Mount assembly Circuit
                  Board masks},
  booktitle    = {Computer Vision and Shape Recognition},
  series       = {World Scientific Series in Computer Science},
  volume       = {14},
  pages        = {1--20},
  publisher    = {World Scientific},
  year         = {1989},
  url          = {https://doi.org/10.1142/9789814434362\_0001},
  doi          = {10.1142/9789814434362\_0001},
  timestamp    = {Tue, 16 May 2017 14:24:25 +0200},
  biburl       = {https://dblp.org/rec/series/wsscs/GauthierLMBL89.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}