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@inproceedings{DBLP:conf/bcb/ChoudheryI23,
  author       = {Sanjeevani Choudhery and
                  Thomas R. Ioerger},
  editor       = {May D. Wang and
                  Byung{-}Jun Yoon},
  title        = {Dual {ICA} to extract interacting sets of genes and conditions from
                  transcriptomic data},
  booktitle    = {Proceedings of the 14th {ACM} International Conference on Bioinformatics,
                  Computational Biology, and Health Informatics, {BCB} 2023, Houston,
                  TX, USA, September 3-6, 2023},
  pages        = {8:1--8:13},
  publisher    = {{ACM}},
  year         = {2023},
  url          = {https://doi.org/10.1145/3584371.3612968},
  doi          = {10.1145/3584371.3612968},
  timestamp    = {Fri, 27 Oct 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/ChoudheryI23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/DuttaBCIM20,
  author       = {Esha Dutta and
                  Ananya Bothra and
                  Theodora Chaspari and
                  Thomas Ioerger and
                  Bobak J. Mortazavi},
  title        = {Reinforcement Learning using {EEG} signals for Therapeutic Use of
                  Music in Emotion Management},
  booktitle    = {42nd Annual International Conference of the {IEEE} Engineering in
                  Medicine {\&} Biology Society, {EMBC} 2020, Montreal, QC, Canada,
                  July 20-24, 2020},
  pages        = {5553--5556},
  publisher    = {{IEEE}},
  year         = {2020},
  url          = {https://doi.org/10.1109/EMBC44109.2020.9175586},
  doi          = {10.1109/EMBC44109.2020.9175586},
  timestamp    = {Fri, 25 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/embc/DuttaBCIM20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SubramaniyamDZS19,
  author       = {Siddharth Subramaniyam and
                  Michael A. DeJesus and
                  Anisha Zaveri and
                  Clare M. Smith and
                  Richard Baker and
                  Sabine Ehrt and
                  Dirk Schnappinger and
                  Christopher M. Sassetti and
                  Thomas R. Ioerger},
  title        = {Statistical analysis of variability in TnSeq data across conditions
                  using zero-inflated negative binomial regression},
  journal      = {{BMC} Bioinform.},
  volume       = {20},
  number       = {1},
  pages        = {603:1--603:15},
  year         = {2019},
  url          = {https://doi.org/10.1186/s12859-019-3156-z},
  doi          = {10.1186/S12859-019-3156-Z},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/SubramaniyamDZS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LaiI18,
  author       = {Yi{-}Pin Lai and
                  Thomas R. Ioerger},
  title        = {A statistical method to identify recombination in bacterial genomes
                  based on {SNP} incompatibility},
  journal      = {{BMC} Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {450:1--450:15},
  year         = {2018},
  url          = {https://doi.org/10.1186/s12859-018-2456-z},
  doi          = {10.1186/S12859-018-2456-Z},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/LaiI18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/EllenbargerKHGI18,
  author       = {Jill F. Ellenbarger and
                  Inna V. Krieger and
                  Hsiao{-}Ling Huang and
                  Silvia G{\'{o}}mez{-}Coca and
                  Thomas R. Ioerger and
                  James C. Sacchettini and
                  Steven E. Wheeler and
                  Kim R. Dunbar},
  title        = {Anion-{\(\pi\)} Interactions in Computer-Aided Drug Design: Modeling
                  the Inhibition of Malate Synthase by Phenyl-Diketo Acids},
  journal      = {J. Chem. Inf. Model.},
  volume       = {58},
  number       = {10},
  pages        = {2085--2091},
  year         = {2018},
  url          = {https://doi.org/10.1021/acs.jcim.8b00417},
  doi          = {10.1021/ACS.JCIM.8B00417},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/EllenbargerKHGI18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/HaspelIA17,
  author       = {Nurit Haspel and
                  Thomas R. Ioerger and
                  Hisham Al{-}Mubaid},
  title        = {Introduction to selected papers from the 8th International Conference
                  on Bioinformatics and Computational Biology {(BICOB} 2016)},
  journal      = {J. Bioinform. Comput. Biol.},
  volume       = {15},
  number       = {3},
  pages        = {1702002:1--1702002:2},
  year         = {2017},
  url          = {https://doi.org/10.1142/S0219720017020024},
  doi          = {10.1142/S0219720017020024},
  timestamp    = {Wed, 24 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jbcb/HaspelIA17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LaiI17,
  author       = {Yi{-}Pin Lai and
                  Thomas R. Ioerger},
  editor       = {Nurit Haspel and
                  Lenore J. Cowen and
                  Amarda Shehu and
                  Tamer Kahveci and
                  Giuseppe Pozzi},
  title        = {A Compatibility Approach to Identify Recombination Breakpoints in
                  Bacterial and Viral Genomes},
  booktitle    = {Proceedings of the 8th {ACM} International Conference on Bioinformatics,
                  Computational Biology, and Health Informatics, {BCB} 2017, Boston,
                  MA, USA, August 20-23, 2017},
  pages        = {11--20},
  publisher    = {{ACM}},
  year         = {2017},
  url          = {https://doi.org/10.1145/3107411.3107432},
  doi          = {10.1145/3107411.3107432},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/LaiI17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/DeJesusI16,
  author       = {Michael A. DeJesus and
                  Thomas R. Ioerger},
  title        = {Normalization of transposon-mutant library sequencing datasets to
                  improve identification of conditionally essential genes},
  journal      = {J. Bioinform. Comput. Biol.},
  volume       = {14},
  number       = {3},
  pages        = {1642004:1--1642004:20},
  year         = {2016},
  url          = {https://doi.org/10.1142/S021972001642004X},
  doi          = {10.1142/S021972001642004X},
  timestamp    = {Wed, 24 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jbcb/DeJesusI16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/DeJesusABSI15,
  author       = {Michael A. DeJesus and
                  Chaitra Ambadipudi and
                  Richard Baker and
                  Christopher M. Sassetti and
                  Thomas R. Ioerger},
  title        = {{TRANSIT} - {A} Software Tool for Himar1 TnSeq Analysis},
  journal      = {PLoS Comput. Biol.},
  volume       = {11},
  number       = {10},
  year         = {2015},
  url          = {https://doi.org/10.1371/journal.pcbi.1004401},
  doi          = {10.1371/JOURNAL.PCBI.1004401},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/DeJesusABSI15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DeJesusI15,
  author       = {Michael A. DeJesus and
                  Thomas R. Ioerger},
  title        = {Capturing Uncertainty by Modeling Local Transposon Insertion Frequencies
                  Improves Discrimination of Essential Genes},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {12},
  number       = {1},
  pages        = {92--102},
  year         = {2015},
  url          = {https://doi.org/10.1109/TCBB.2014.2326857},
  doi          = {10.1109/TCBB.2014.2326857},
  timestamp    = {Mon, 03 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/DeJesusI15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeJesusZSRSI13,
  author       = {Michael A. DeJesus and
                  Yanjia J. Zhang and
                  Christopher M. Sassetti and
                  Eric J. Rubin and
                  James C. Sacchettini and
                  Thomas R. Ioerger},
  title        = {Bayesian analysis of gene essentiality based on sequencing of transposon
                  insertion libraries},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {695--703},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt043},
  doi          = {10.1093/BIOINFORMATICS/BTT043},
  timestamp    = {Sun, 06 Oct 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DeJesusZSRSI13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DeJesusI13,
  author       = {Michael A. DeJesus and
                  Thomas R. Ioerger},
  title        = {A Hidden Markov Model for identifying essential and growth-defect
                  regions in bacterial genomes from transposon insertion sequencing
                  data},
  journal      = {{BMC} Bioinform.},
  volume       = {14},
  pages        = {303},
  year         = {2013},
  url          = {https://doi.org/10.1186/1471-2105-14-303},
  doi          = {10.1186/1471-2105-14-303},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/DeJesusI13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/DeJesusI13,
  author       = {Michael A. DeJesus and
                  Thomas R. Ioerger},
  editor       = {Jing Gao},
  title        = {Improving discrimination of essential genes by modeling local insertion
                  frequencies in transposon mutagenesis data},
  booktitle    = {{ACM} Conference on Bioinformatics, Computational Biology and Biomedical
                  Informatics. {ACM-BCB} 2013, Washington, DC, USA, September 22-25,
                  2013},
  pages        = {144},
  publisher    = {{ACM}},
  year         = {2013},
  url          = {https://doi.org/10.1145/2506583.2506610},
  doi          = {10.1145/2506583.2506610},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/DeJesusI13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/PaiSI08,
  author       = {Reetal Pai and
                  James C. Sacchettini and
                  Thomas R. Ioerger},
  editor       = {Hamid R. Arabnia and
                  Mary Qu Yang and
                  Jack Y. Yang},
  title        = {Analysis of Protein-Ligand Interactions Using Localized Stereochemical
                  Features},
  booktitle    = {International Conference on Bioinformatics {\&} Computational
                  Biology, {BIOCOMP} 2008, July 14-17, 2008, Las Vegas Nevada, USA,
                  2 Volumes},
  pages        = {666--673},
  publisher    = {{CSREA} Press},
  year         = {2008},
  timestamp    = {Fri, 06 Feb 2009 11:52:50 +0100},
  biburl       = {https://dblp.org/rec/conf/biocomp/PaiSI08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/PaiSI08a,
  author       = {Reetal Pai and
                  James C. Sacchettini and
                  Thomas R. Ioerger},
  editor       = {Hamid R. Arabnia and
                  Mary Qu Yang and
                  Jack Y. Yang},
  title        = {Specificity Normalization for Identifying Selective Inhibitors in
                  Virtual Screening},
  booktitle    = {International Conference on Bioinformatics {\&} Computational
                  Biology, {BIOCOMP} 2008, July 14-17, 2008, Las Vegas Nevada, USA,
                  2 Volumes},
  pages        = {787--793},
  publisher    = {{CSREA} Press},
  year         = {2008},
  timestamp    = {Fri, 06 Feb 2009 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/biocomp/PaiSI08a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GopalMRPSSI07,
  author       = {Kreshna Gopal and
                  Erik McKee and
                  Tod D. Romo and
                  Reetal Pai and
                  Jacob N. Smith and
                  James C. Sacchettini and
                  Thomas R. Ioerger},
  title        = {Crystallographic protein model-building on the web},
  journal      = {Bioinform.},
  volume       = {23},
  number       = {3},
  pages        = {375--377},
  year         = {2007},
  url          = {https://doi.org/10.1093/bioinformatics/btl584},
  doi          = {10.1093/BIOINFORMATICS/BTL584},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GopalMRPSSI07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/GopalSI07,
  author       = {Kreshna Gopal and
                  James C. Sacchettini and
                  Thomas R. Ioerger},
  title        = {Database Approaches and Data Representation in Structural Bioinformatics},
  booktitle    = {Proceedings of the 7th {IEEE} International Conference on Bioinformatics
                  and Bioengineering, {BIBE} 2007, October 14-17, 2007, Harvard Medical
                  School, Boston, MA, {USA}},
  pages        = {425--432},
  publisher    = {{IEEE} Computer Society},
  year         = {2007},
  url          = {https://doi.org/10.1109/BIBE.2007.4375597},
  doi          = {10.1109/BIBE.2007.4375597},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bibe/GopalSI07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/flairs/CreelMI07,
  author       = {James Creel and
                  Christopher Menzel and
                  Thomas R. Ioerger},
  editor       = {David Wilson and
                  Geoff Sutcliffe},
  title        = {Intention Is Commitment with Expectation},
  booktitle    = {Proceedings of the Twentieth International Florida Artificial Intelligence
                  Research Society Conference, May 7-9, 2007, Key West, Florida, {USA}},
  pages        = {50--55},
  publisher    = {{AAAI} Press},
  year         = {2007},
  url          = {http://www.aaai.org/Library/FLAIRS/2007/flairs07-011.php},
  timestamp    = {Wed, 26 Oct 2022 08:35:25 +0200},
  biburl       = {https://dblp.org/rec/conf/flairs/CreelMI07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icdm/GopalI07,
  author       = {Kreshna Gopal and
                  Thomas R. Ioerger},
  title        = {Distance Metric Learning through Optimization of Ranking},
  booktitle    = {Workshops Proceedings of the 7th {IEEE} International Conference on
                  Data Mining {(ICDM} 2007), October 28-31, 2007, Omaha, Nebraska, {USA}},
  pages        = {201--206},
  publisher    = {{IEEE} Computer Society},
  year         = {2007},
  url          = {https://doi.org/10.1109/ICDMW.2007.113},
  doi          = {10.1109/ICDMW.2007.113},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/icdm/GopalI07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/aim/GopalRMPSSI06,
  author       = {Kreshna Gopal and
                  Tod D. Romo and
                  Erik McKee and
                  Reetal Pai and
                  Jacob N. Smith and
                  James C. Sacchettini and
                  Thomas R. Ioerger},
  title        = {{TEXTAL:} Crystallographic Protein Model Building Using {AI} and Pattern
                  Recognition},
  journal      = {{AI} Mag.},
  volume       = {27},
  number       = {3},
  pages        = {15--24},
  year         = {2006},
  url          = {https://doi.org/10.1609/aimag.v27i3.1889},
  doi          = {10.1609/AIMAG.V27I3.1889},
  timestamp    = {Tue, 25 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/aim/GopalRMPSSI06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tkde/FanYMIV06,
  author       = {Xiaocong Fan and
                  John Yen and
                  Michael S. Miller and
                  Thomas R. Ioerger and
                  Richard A. Volz},
  title        = {{MALLET-A} Multi-Agent Logic Language for Encoding Teamwork},
  journal      = {{IEEE} Trans. Knowl. Data Eng.},
  volume       = {18},
  number       = {1},
  pages        = {123--138},
  year         = {2006},
  url          = {https://doi.org/10.1109/TKDE.2006.13},
  doi          = {10.1109/TKDE.2006.13},
  timestamp    = {Sat, 20 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tkde/FanYMIV06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/flairs/PalmerI06,
  author       = {Victor Palmer and
                  Thomas R. Ioerger},
  editor       = {Geoff Sutcliffe and
                  Randy Goebel},
  title        = {Coalition Formation Meets Information Theory},
  booktitle    = {Proceedings of the Nineteenth International Florida Artificial Intelligence
                  Research Society Conference, Melbourne Beach, Florida, USA, May 11-13,
                  2006},
  pages        = {98--99},
  publisher    = {{AAAI} Press},
  year         = {2006},
  url          = {http://www.aaai.org/Library/FLAIRS/2006/flairs06-017.php},
  timestamp    = {Wed, 26 Oct 2022 08:35:26 +0200},
  biburl       = {https://dblp.org/rec/conf/flairs/PalmerI06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ecra/HeI05,
  author       = {Linli He and
                  Thomas R. Ioerger},
  title        = {Combining bundle search with buyer coalition formation in electronic
                  markets: {A} distributed approach through explicit negotiation},
  journal      = {Electron. Commer. Res. Appl.},
  volume       = {4},
  number       = {4},
  pages        = {329--344},
  year         = {2005},
  url          = {https://doi.org/10.1016/j.elerap.2005.06.006},
  doi          = {10.1016/J.ELERAP.2005.06.006},
  timestamp    = {Sat, 22 Feb 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ecra/HeI05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/expert/RomoGMKPSSI05,
  author       = {Tod D. Romo and
                  Kreshna Gopal and
                  Erik McKee and
                  Lalji Kanbi and
                  Reetal Pai and
                  Jacob N. Smith and
                  James C. Sacchettini and
                  Thomas R. Ioerger},
  title        = {{TEXTAL:} AI-Based Structural Determination for X-ray Protein Crystallography},
  journal      = {{IEEE} Intell. Syst.},
  volume       = {20},
  number       = {6},
  pages        = {59--63},
  year         = {2005},
  url          = {https://doi.org/10.1109/MIS.2005.114},
  doi          = {10.1109/MIS.2005.114},
  timestamp    = {Fri, 06 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/expert/RomoGMKPSSI05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/GopalRSI05,
  author       = {Kreshna Gopal and
                  Tod D. Romo and
                  James C. Sacchettini and
                  Thomas R. Ioerger},
  title        = {Determining Relevant Features to Recognize Electron Density Patterns
                  in X-ray Protein Crystallography},
  journal      = {J. Bioinform. Comput. Biol.},
  volume       = {3},
  number       = {3},
  pages        = {645--676},
  year         = {2005},
  url          = {https://doi.org/10.1142/S0219720005001272},
  doi          = {10.1142/S0219720005001272},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jbcb/GopalRSI05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/GopalRMCKPSSI05,
  author       = {Kreshna Gopal and
                  Tod D. Romo and
                  Erik McKee and
                  Kevin Childs and
                  Lalji Kanbi and
                  Reetal Pai and
                  Jacob N. Smith and
                  James C. Sacchettini and
                  Thomas R. Ioerger},
  editor       = {Manuela M. Veloso and
                  Subbarao Kambhampati},
  title        = {TEXTAL{\texttrademark}: Automated Crystallographic Protein Structure
                  Determination},
  booktitle    = {Proceedings, The Twentieth National Conference on Artificial Intelligence
                  and the Seventeenth Innovative Applications of Artificial Intelligence
                  Conference, July 9-13, 2005, Pittsburgh, Pennsylvania, {USA}},
  pages        = {1483--1490},
  publisher    = {{AAAI} Press / The {MIT} Press},
  year         = {2005},
  timestamp    = {Sat, 10 Nov 2012 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/aaai/GopalRMCKPSSI05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/atal/ZhangVI05,
  author       = {Yu Zhang and
                  Richard A. Volz and
                  Thomas R. Ioerger},
  editor       = {Frank Dignum and
                  Virginia Dignum and
                  Sven Koenig and
                  Sarit Kraus and
                  Munindar P. Singh and
                  Michael J. Wooldridge},
  title        = {Observation-based proactive communication in team cooperation},
  booktitle    = {4th International Joint Conference on Autonomous Agents and Multiagent
                  Systems {(AAMAS} 2005), July 25-29, 2005, Utrecht, The Netherlands},
  pages        = {1321--1322},
  publisher    = {{ACM}},
  year         = {2005},
  url          = {https://doi.org/10.1145/1082473.1082753},
  doi          = {10.1145/1082473.1082753},
  timestamp    = {Mon, 08 Jul 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/atal/ZhangVI05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icai/CaoVIM05,
  author       = {Sen Cao and
                  Richard A. Volz and
                  Thomas R. Ioerger and
                  Michael S. Miller},
  editor       = {Hamid R. Arabnia and
                  Rose Joshua},
  title        = {On Proactive Helping Behaviors In Teamwork},
  booktitle    = {Proceedings of the 2005 International Conference on Artificial Intelligence,
                  {ICAI} 2005, Las Vegas, Nevada, USA, June 27-30, 2005, Volume 2},
  pages        = {974--980},
  publisher    = {{CSREA} Press},
  year         = {2005},
  timestamp    = {Tue, 31 Jan 2006 12:59:04 +0100},
  biburl       = {https://dblp.org/rec/conf/icai/CaoVIM05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sac/HeI05,
  author       = {Linli He and
                  Thomas R. Ioerger},
  editor       = {Hisham Haddad and
                  Lorie M. Liebrock and
                  Andrea Omicini and
                  Roger L. Wainwright},
  title        = {Forming resource-sharing coalitions: a distributed resource allocation
                  mechanism for self-interested agents in computational grids},
  booktitle    = {Proceedings of the 2005 {ACM} Symposium on Applied Computing (SAC),
                  Santa Fe, New Mexico, USA, March 13-17, 2005},
  pages        = {84--91},
  publisher    = {{ACM}},
  year         = {2005},
  url          = {https://doi.org/10.1145/1066677.1066700},
  doi          = {10.1145/1066677.1066700},
  timestamp    = {Tue, 06 Nov 2018 11:06:45 +0100},
  biburl       = {https://dblp.org/rec/conf/sac/HeI05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/smc/ZhangIV05,
  author       = {Yu Zhang and
                  Thomas R. Ioerger and
                  Richard A. Volz},
  title        = {Decision-theoretic proactive communication in multiagent teamwork},
  booktitle    = {Proceedings of the {IEEE} International Conference on Systems, Man
                  and Cybernetics, Waikoloa, Hawaii, USA, October 10-12, 2005},
  pages        = {3903--3908},
  publisher    = {{IEEE}},
  year         = {2005},
  url          = {https://doi.org/10.1109/ICSMC.2005.1571755},
  doi          = {10.1109/ICSMC.2005.1571755},
  timestamp    = {Mon, 08 Jul 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/smc/ZhangIV05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ACMicec/HeI04,
  author       = {Linli He and
                  Thomas R. Ioerger},
  editor       = {Marijn Janssen and
                  Henk G. Sol and
                  Ren{\'{e}} W. Wagenaar},
  title        = {Combining bundle search with buyer coalition formation in electronic
                  markets: a distributed approach through explicit negotiation},
  booktitle    = {Proceedings of the 6th International Conference on Electronic Commerce,
                  {ICEC} 2004, Delft, The Netherlands, October 25-27, 2004},
  series       = {{ACM} International Conference Proceeding Series},
  volume       = {60},
  pages        = {95--104},
  publisher    = {{ACM}},
  year         = {2004},
  url          = {https://doi.org/10.1145/1052220.1052233},
  doi          = {10.1145/1052220.1052233},
  timestamp    = {Fri, 08 Sep 2023 14:37:35 +0200},
  biburl       = {https://dblp.org/rec/conf/ACMicec/HeI04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/atal/HeI04,
  author       = {Linli He and
                  Thomas R. Ioerger},
  title        = {Combining Bundle Search with Buyer Coalition Formation in Electronic
                  Markets: {A} Distributed Approach through Negotiation},
  booktitle    = {3rd International Joint Conference on Autonomous Agents and Multiagent
                  Systems {(AAMAS} 2004), 19-23 August 2004, New York, NY, {USA}},
  pages        = {1440--1441},
  publisher    = {{IEEE} Computer Society},
  year         = {2004},
  url          = {https://doi.ieeecomputersociety.org/10.1109/AAMAS.2004.10292},
  doi          = {10.1109/AAMAS.2004.10292},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/atal/HeI04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/GopalRSI04,
  author       = {Kreshna Gopal and
                  Tod D. Romo and
                  James C. Sacchettini and
                  Thomas R. Ioerger},
  title        = {Weighting Features to Recognize 3D Patterns of Electron Density in
                  X-Ray Protein Crystallography},
  booktitle    = {3rd International {IEEE} Computer Society Computational Systems Bioinformatics
                  Conference, {CSB} 2004, Stanford, CA, USA, August 16-19, 2004},
  pages        = {255--265},
  publisher    = {{IEEE} Computer Society},
  year         = {2004},
  url          = {https://doi.org/10.1109/CSB.2004.1332439},
  doi          = {10.1109/CSB.2004.1332439},
  timestamp    = {Thu, 23 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/csb/GopalRSI04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/flairs/Ioerger04,
  author       = {Thomas R. Ioerger},
  editor       = {Valerie Barr and
                  Zdravko Markov},
  title        = {Reasoning about Beliefs, Observability, and Information Exchange in
                  Teamwork},
  booktitle    = {Proceedings of the Seventeenth International Florida Artificial Intelligence
                  Research Society Conference, Miami Beach, Florida, {USA}},
  pages        = {430--435},
  publisher    = {{AAAI} Press},
  year         = {2004},
  url          = {http://www.aaai.org/Library/FLAIRS/2004/flairs04-075.php},
  timestamp    = {Wed, 26 Oct 2022 08:35:30 +0200},
  biburl       = {https://dblp.org/rec/conf/flairs/Ioerger04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icai/GopalRSI04,
  author       = {Kreshna Gopal and
                  Tod D. Romo and
                  James C. Sacchettini and
                  Thomas R. Ioerger},
  editor       = {Hamid R. Arabnia},
  title        = {Evaluation of Geometric {\&} Probabilistic Distance Measures To
                  Retrieve Electron Density Patterns for Protein Structure Determination},
  booktitle    = {Proceedings of the International Conference on Artificial Intelligence,
                  {IC-AI} '04, June 21-24, 2004, Las Vegas, Nevada, USA, Volume 1},
  pages        = {427--432},
  publisher    = {{CSREA} Press},
  year         = {2004},
  timestamp    = {Fri, 19 Nov 2004 14:58:57 +0100},
  biburl       = {https://dblp.org/rec/conf/icai/GopalRSI04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icai/HeI04,
  author       = {Linli He and
                  Thomas R. Ioerger},
  editor       = {Hamid R. Arabnia},
  title        = {Task-Oriented Computational Economic-Based Distributed Resource Allocation
                  Mechanisms for Computational Grids},
  booktitle    = {Proceedings of the International Conference on Artificial Intelligence,
                  {IC-AI} '04, June 21-24, 2004, Las Vegas, Nevada, USA, Volume 1},
  pages        = {462--468},
  publisher    = {{CSREA} Press},
  year         = {2004},
  timestamp    = {Fri, 19 Nov 2004 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/icai/HeI04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icai/HeI04a,
  author       = {Linli He and
                  Thomas R. Ioerger},
  editor       = {Hamid R. Arabnia and
                  Youngsong Mun},
  title        = {An Efficient Heuristic Bundle Search Algorithm for Buyers in Electronic
                  Markets},
  booktitle    = {Proceedings of the International Conference on Artificial Intelligence,
                  {IC-AI} '04, Volume 2 {\&} Proceedings of the International Conference
                  on Machine Learning; Models, Technologies {\&} Applications, {MLMTA}
                  '04, June 21-24, 2004, Las Vegas, Nevada, {USA}},
  pages        = {729--735},
  publisher    = {{CSREA} Press},
  year         = {2004},
  timestamp    = {Fri, 19 Nov 2004 15:01:48 +0100},
  biburl       = {https://dblp.org/rec/conf/icai/HeI04a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmla/GopalRSI04,
  author       = {Kreshna Gopal and
                  Tod D. Romo and
                  James C. Sacchettini and
                  Thomas R. Ioerger},
  editor       = {Mehmed M. Kantardzic and
                  Mariofanna G. Milanova and
                  Olfa Nasraoui},
  title        = {Efficient retrieval of electron density patterns for modeling proteins
                  by X-ray crystallography},
  booktitle    = {Proceedings of the 2004 International Conference on Machine Learning
                  and Applications - {ICMLA} 2004, 16-18 December 2004, Louisville,
                  KY, {USA}},
  pages        = {380--387},
  publisher    = {{IEEE} Computer Society},
  year         = {2004},
  url          = {https://doi.org/10.1109/ICMLA.2004.1383539},
  doi          = {10.1109/ICMLA.2004.1383539},
  timestamp    = {Wed, 16 Oct 2019 14:14:53 +0200},
  biburl       = {https://dblp.org/rec/conf/icmla/GopalRSI04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sac/ZhangVlY04,
  author       = {Yu Zhang and
                  Richard A. Volz and
                  Thomas R. Ioerger and
                  John Yen},
  editor       = {Hisham Haddad and
                  Andrea Omicini and
                  Roger L. Wainwright and
                  Lorie M. Liebrock},
  title        = {A decision-theoretic approach for designing proactive communication
                  in multi-agent teamwork},
  booktitle    = {Proceedings of the 2004 {ACM} Symposium on Applied Computing (SAC),
                  Nicosia, Cyprus, March 14-17, 2004},
  pages        = {64--71},
  publisher    = {{ACM}},
  year         = {2004},
  url          = {https://doi.org/10.1145/967900.967917},
  doi          = {10.1145/967900.967917},
  timestamp    = {Mon, 08 Jul 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/sac/ZhangVlY04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijseke/XuVIY03,
  author       = {Dianxiang Xu and
                  Richard A. Volz and
                  Thomas R. Ioerger and
                  John Yen},
  title        = {Modeling and Analyzing Multi-Agent Behaviors Using Predicate/Transition
                  Nets},
  journal      = {Int. J. Softw. Eng. Knowl. Eng.},
  volume       = {13},
  number       = {1},
  pages        = {103--124},
  year         = {2003},
  url          = {https://doi.org/10.1142/S0218194003001184},
  doi          = {10.1142/S0218194003001184},
  timestamp    = {Wed, 22 Jul 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ijseke/XuVIY03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cikm/WidyantoroIY03,
  author       = {Dwi H. Widyantoro and
                  Thomas R. Ioerger and
                  John Yen},
  title        = {Tracking changes in user interests with a few relevance judgments},
  booktitle    = {Proceedings of the 2003 {ACM} {CIKM} International Conference on Information
                  and Knowledge Management, New Orleans, Louisiana, USA, November 2-8,
                  2003},
  pages        = {548--551},
  publisher    = {{ACM}},
  year         = {2003},
  url          = {https://doi.org/10.1145/956863.956970},
  doi          = {10.1145/956863.956970},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/cikm/WidyantoroIY03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iaai/GopalPIRS03,
  author       = {Kreshna Gopal and
                  Reetal Pai and
                  Thomas R. Ioerger and
                  Tod D. Romo and
                  James C. Sacchettini},
  editor       = {John Riedl and
                  Randall W. Hill Jr.},
  title        = {TEXTAL\({}^{\mbox{TM}}\): Artificial Intelligence Techniques for Automated
                  Protein Structure Determination},
  booktitle    = {Proceedings of the Fifteenth Conference on Innovative Applications
                  of Artificial Intelligence, August 12-14, 2003, Acapulco, Mexico},
  pages        = {93--100},
  publisher    = {{AAAI}},
  year         = {2003},
  url          = {http://www.aaai.org/Library/IAAI/2003/iaai03-013.php},
  timestamp    = {Mon, 04 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/iaai/GopalPIRS03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icai/HeI03,
  author       = {Linli He and
                  Thomas R. Ioerger},
  editor       = {Hamid R. Arabnia and
                  Rose Joshua and
                  Youngsong Mun},
  title        = {A Quantitative Model of Capabilities in Multi-Agent Systems},
  booktitle    = {Proceedings of the International Conference on Artificial Intelligence,
                  {IC-AI} '03, June 23 - 26, 2003, Las Vegas, Nevada, USA, Volume 2},
  pages        = {730--736},
  publisher    = {{CSREA} Press},
  year         = {2003},
  timestamp    = {Fri, 10 Oct 2003 13:38:40 +0200},
  biburl       = {https://dblp.org/rec/conf/icai/HeI03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icai/XuMVI03,
  author       = {Dianxiang Xu and
                  Michael S. Miller and
                  Richard A. Volz and
                  Thomas R. Ioerger},
  editor       = {Hamid R. Arabnia and
                  Rose Joshua and
                  Youngsong Mun},
  title        = {Collaborative Agents for {C2} Teamwork Simulation},
  booktitle    = {Proceedings of the International Conference on Artificial Intelligence,
                  {IC-AI} '03, June 23 - 26, 2003, Las Vegas, Nevada, USA, Volume 2},
  pages        = {723--729},
  publisher    = {{CSREA} Press},
  year         = {2003},
  timestamp    = {Fri, 10 Oct 2003 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/icai/XuMVI03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/GaneshSI03,
  author       = {R. Ganesh and
                  Deborah A. Siegele and
                  Thomas R. Ioerger},
  editor       = {Russ B. Altman and
                  A. Keith Dunker and
                  Lawrence Hunter and
                  Teri E. Klein},
  title        = {{MOPAC:} MOtif Finding by Preprocessing and Agglomerative Clustering
                  from Microarrays},
  booktitle    = {Proceedings of the 8th Pacific Symposium on Biocomputing, {PSB} 2003,
                  Lihue, Hawaii, USA, January 3-7, 2003},
  pages        = {41--52},
  year         = {2003},
  url          = {http://psb.stanford.edu/psb-online/proceedings/psb03/ganesh.pdf},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/psb/GaneshSI03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fuzzIEEE/RozichIY02,
  author       = {Ryan Rozich and
                  Thomas R. Ioerger and
                  Ronald R. Yager},
  title        = {{FURL-A} theory revision approach to learning fuzzy rules},
  booktitle    = {Proceedings of the 2002 {IEEE} International Conference on Fuzzy Systems,
                  FUZZ-IEEE'02, Honolulu, Hawaii, USA, May 12 - 17, 2002},
  pages        = {791--796},
  publisher    = {{IEEE}},
  year         = {2002},
  url          = {https://doi.org/10.1109/FUZZ.2002.1005094},
  doi          = {10.1109/FUZZ.2002.1005094},
  timestamp    = {Mon, 09 Aug 2021 14:54:02 +0200},
  biburl       = {https://dblp.org/rec/conf/fuzzIEEE/RozichIY02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icai/CaoVIZ02,
  author       = {Sen Cao and
                  Richard A. Volz and
                  Thomas R. Ioerger and
                  Yu Zhang},
  editor       = {Hamid R. Arabnia and
                  Youngsong Mun},
  title        = {Role-Based and Agent-Oriental Teamwork Modeling},
  booktitle    = {Proceedings of the International Conference on Artificial Intelligence,
                  {IC-AI} '02, June 24 - 27, 2002, Las Vegas, Nevada, USA, Volume 3},
  pages        = {1190},
  publisher    = {{CSREA} Press},
  year         = {2002},
  timestamp    = {Mon, 08 Jul 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/icai/CaoVIZ02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icai/XuVI02,
  author       = {Dianxiang Xu and
                  Richard A. Volz and
                  Thomas R. Ioerger},
  editor       = {Hamid R. Arabnia and
                  Youngsong Mun},
  title        = {Generating Parallel Based on Planning Graph Analysis of Predicate/Transition
                  Nets},
  booktitle    = {Proceedings of the International Conference on Artificial Intelligence,
                  {IC-AI} '02, June 24 - 27, 2002, Las Vegas, Nevada, USA, Volume 1},
  pages        = {440--446},
  publisher    = {{CSREA} Press},
  year         = {2002},
  timestamp    = {Fri, 31 Oct 2003 09:10:09 +0100},
  biburl       = {https://dblp.org/rec/conf/icai/XuVI02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icai/ZhangVICY02,
  author       = {Yu Zhang and
                  Richard A. Volz and
                  Thomas R. Ioerger and
                  Sen Cao and
                  John Yen},
  editor       = {Hamid R. Arabnia and
                  Youngsong Mun},
  title        = {Proactive Information Exchange During Team Cooperation},
  booktitle    = {Proceedings of the International Conference on Artificial Intelligence,
                  {IC-AI} '02, June 24 - 27, 2002, Las Vegas, Nevada, USA, Volume 1},
  pages        = {341--346},
  publisher    = {{CSREA} Press},
  year         = {2002},
  timestamp    = {Mon, 08 Jul 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/icai/ZhangVICY02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icdm/WidyantoroIY02,
  author       = {Dwi H. Widyantoro and
                  Thomas R. Ioerger and
                  John Yen},
  title        = {An Incremental Approach to Building a Cluster Hierarchy},
  booktitle    = {Proceedings of the 2002 {IEEE} International Conference on Data Mining
                  {(ICDM} 2002), 9-12 December 2002, Maebashi City, Japan},
  pages        = {705--708},
  publisher    = {{IEEE} Computer Society},
  year         = {2002},
  url          = {https://doi.org/10.1109/ICDM.2002.1184034},
  doi          = {10.1109/ICDM.2002.1184034},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/icdm/WidyantoroIY02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icpr/TaoIS02,
  author       = {Yu Tao and
                  Thomas R. Ioerger and
                  James C. Sacchettini},
  title        = {Extracting Fractal Features for Analyzing Protein Structure},
  booktitle    = {16th International Conference on Pattern Recognition, {ICPR} 2002,
                  Quebec, Canada, August 11-15, 2002},
  pages        = {482--485},
  publisher    = {{IEEE} Computer Society},
  year         = {2002},
  url          = {https://doi.org/10.1109/ICPR.2002.1048343},
  doi          = {10.1109/ICPR.2002.1048343},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/icpr/TaoIS02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/seke/XuVIY02,
  author       = {Dianxiang Xu and
                  Richard A. Volz and
                  Thomas R. Ioerger and
                  John Yen},
  title        = {Modeling and verifying multi-agent behaviors using predicate/transition
                  nets},
  booktitle    = {Proceedings of the 14th international conference on Software engineering
                  and knowledge engineering, {SEKE} 2002, Ischia, Italy, July 15-19,
                  2002},
  pages        = {193--200},
  publisher    = {{ACM}},
  year         = {2002},
  url          = {https://doi.org/10.1145/568760.568794},
  doi          = {10.1145/568760.568794},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/seke/XuVIY02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/aai/BiggersI01,
  author       = {Keith E. Biggers and
                  Thomas R. Ioerger},
  title        = {Automatic Generation of Communication and Teamwork within Multi-Agent
                  Teams},
  journal      = {Appl. Artif. Intell.},
  volume       = {15},
  number       = {10},
  pages        = {875--916},
  year         = {2001},
  url          = {https://doi.org/10.1080/088395101753242679},
  doi          = {10.1080/088395101753242679},
  timestamp    = {Tue, 25 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/aai/BiggersI01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jasis/WidyantoroIY01,
  author       = {Dwi H. Widyantoro and
                  Thomas R. Ioerger and
                  John Yen},
  title        = {Learning user interest dynamics with a three-descriptor representation},
  journal      = {J. Assoc. Inf. Sci. Technol.},
  volume       = {52},
  number       = {3},
  pages        = {212--225},
  year         = {2001},
  url          = {https://doi.org/10.1002/1532-2890(2000)9999:9999\<::AID-ASI1615\>3.0.CO;2-O},
  doi          = {10.1002/1532-2890(2000)9999:9999\<::AID-ASI1615\>3.0.CO;2-O},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jasis/WidyantoroIY01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/agents/JohnsonI01,
  author       = {J. Colby Johnson and
                  Thomas R. Ioerger},
  editor       = {Elisabeth Andr{\'{e}} and
                  Sandip Sen and
                  Claude Frasson and
                  J{\"{o}}rg P. M{\"{u}}ller},
  title        = {A formal model of responsibilities in agent-based teams},
  booktitle    = {Proceedings of the Fifth International Conference on Autonomous Agents,
                  {AGENTS} 2001, Montreal, Canada, May 28 - June 1, 2001},
  pages        = {157--158},
  publisher    = {{ACM}},
  year         = {2001},
  url          = {https://doi.org/10.1145/375735.376035},
  doi          = {10.1145/375735.376035},
  timestamp    = {Sat, 30 Sep 2023 09:33:47 +0200},
  biburl       = {https://dblp.org/rec/conf/agents/JohnsonI01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cec/YangWIY01,
  author       = {Linyu Yang and
                  Dwi H. Widyantoro and
                  Thomas Ioerger and
                  John Yen},
  title        = {An entropy-based adaptive genetic algorithm for learning classification
                  rules},
  booktitle    = {Proceedings of the 2001 Congress on Evolutionary Computation, {CEC}
                  2001, COEX, Seoul, Korea, May 27-30, 2001},
  pages        = {790--796},
  publisher    = {{IEEE}},
  year         = {2001},
  url          = {https://doi.org/10.1109/CEC.2001.934271},
  doi          = {10.1109/CEC.2001.934271},
  timestamp    = {Sat, 08 Jan 2022 01:38:02 +0100},
  biburl       = {https://dblp.org/rec/conf/cec/YangWIY01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icip/TaoIT01,
  author       = {Yu Tao and
                  Thomas R. Ioerger and
                  Yuan Yan Tang},
  title        = {Extraction of rotation invariant signature based on fractal geometry},
  booktitle    = {Proceedings of the 2001 International Conference on Image Processing,
                  {ICIP} 2001, Thessaloniki, Greece, October 7-10, 2001},
  pages        = {1090--1093},
  publisher    = {{IEEE}},
  year         = {2001},
  url          = {https://doi.org/10.1109/ICIP.2001.959239},
  doi          = {10.1109/ICIP.2001.959239},
  timestamp    = {Thu, 24 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/icip/TaoIT01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcai/YenYIMXV01,
  author       = {John Yen and
                  Jianwen Yin and
                  Thomas R. Ioerger and
                  Michael S. Miller and
                  Dianxiang Xu and
                  Richard A. Volz},
  editor       = {Bernhard Nebel},
  title        = {{CAST:} Collaborative Agents for Simulating Teamwork},
  booktitle    = {Proceedings of the Seventeenth International Joint Conference on Artificial
                  Intelligence, {IJCAI} 2001, Seattle, Washington, USA, August 4-10,
                  2001},
  pages        = {1135--1144},
  publisher    = {Morgan Kaufmann},
  year         = {2001},
  timestamp    = {Tue, 20 Aug 2019 16:18:14 +0200},
  biburl       = {https://dblp.org/rec/conf/ijcai/YenYIMXV01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/aamas/El-NasrYI00,
  author       = {Magy Seif El{-}Nasr and
                  John Yen and
                  Thomas R. Ioerger},
  title        = {FLAME-Fuzzy Logic Adaptive Model of Emotions},
  journal      = {Auton. Agents Multi Agent Syst.},
  volume       = {3},
  number       = {3},
  pages        = {219--257},
  year         = {2000},
  url          = {https://doi.org/10.1023/A:1010030809960},
  doi          = {10.1023/A:1010030809960},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/aamas/El-NasrYI00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/GopalI00,
  author       = {Kreshna Gopal and
                  Thomas R. Ioerger},
  editor       = {Henry A. Kautz and
                  Bruce W. Porter},
  title        = {An Adaptive Planner Based on Learning of Planning Performance},
  booktitle    = {Proceedings of the Seventeenth National Conference on Artificial Intelligence
                  and Twelfth Conference on on Innovative Applications of Artificial
                  Intelligence, July 30 - August 3, 2000, Austin, Texas, {USA}},
  pages        = {1073},
  publisher    = {{AAAI} Press / The {MIT} Press},
  year         = {2000},
  url          = {http://www.aaai.org/Library/AAAI/2000/aaai00-156.php},
  timestamp    = {Tue, 05 Sep 2023 09:10:47 +0200},
  biburl       = {https://dblp.org/rec/conf/aaai/GopalI00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/agents/YinMIYV00,
  author       = {Jianwen Yin and
                  Michael S. Miller and
                  Thomas R. Ioerger and
                  John Yen and
                  Richard A. Volz},
  editor       = {Carles Sierra and
                  Maria L. Gini and
                  Jeffrey S. Rosenschein},
  title        = {A knowledge-based approach for designing intelligent team training
                  systems},
  booktitle    = {Proceedings of the Fourth International Conference on Autonomous Agents,
                  {AGENTS} 2000, Barcelona, Catalonia, Spain, June 3-7, 2000},
  pages        = {427--434},
  publisher    = {{ACM}},
  year         = {2000},
  url          = {https://doi.org/10.1145/336595.337560},
  doi          = {10.1145/336595.337560},
  timestamp    = {Tue, 06 Nov 2018 11:07:01 +0100},
  biburl       = {https://dblp.org/rec/conf/agents/YinMIYV00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/its/MillerYVIY00,
  author       = {Michael S. Miller and
                  Jianwen Yin and
                  Richard A. Volz and
                  Thomas R. Ioerger and
                  John Yen},
  editor       = {Gilles Gauthier and
                  Claude Frasson and
                  Kurt VanLehn},
  title        = {Training Teams with Collaborative Agents},
  booktitle    = {Intelligent Tutoring Systems, 5th International Conference, {ITS}
                  2000, Montr{\'{e}}al, Canada, June 19-23, 2000, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {1839},
  pages        = {63--72},
  publisher    = {Springer},
  year         = {2000},
  url          = {https://doi.org/10.1007/3-540-45108-0\_10},
  doi          = {10.1007/3-540-45108-0\_10},
  timestamp    = {Tue, 14 May 2019 10:00:48 +0200},
  biburl       = {https://dblp.org/rec/conf/its/MillerYVIY00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/Ioerger99,
  author       = {Thomas R. Ioerger},
  editor       = {Jim Hendler and
                  Devika Subramanian},
  title        = {Detecting Feature Interactions from Accuracies of Random Feature Subsets},
  booktitle    = {Proceedings of the Sixteenth National Conference on Artificial Intelligence
                  and Eleventh Conference on Innovative Applications of Artificial Intelligence,
                  July 18-22, 1999, Orlando, Florida, {USA}},
  pages        = {350--357},
  publisher    = {{AAAI} Press / The {MIT} Press},
  year         = {1999},
  url          = {http://www.aaai.org/Library/AAAI/1999/aaai99-051.php},
  timestamp    = {Tue, 05 Sep 2023 09:10:47 +0200},
  biburl       = {https://dblp.org/rec/conf/aaai/Ioerger99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/agents/El-NasirIY99,
  author       = {Magy Seif El{-}Nasr and
                  Thomas R. Ioerger and
                  John Yen},
  editor       = {Oren Etzioni and
                  J{\"{o}}rg P. M{\"{u}}ller and
                  Jeffrey M. Bradshaw},
  title        = {{PETEEI:} {A} {PET} With Evolving Emotional Intelligence},
  booktitle    = {Proceedings of the Third Annual Conference on Autonomous Agents, {AGENTS}
                  1999, Seattle, WA, USA, May 1-5, 1999},
  pages        = {9--15},
  publisher    = {{ACM}},
  year         = {1999},
  url          = {https://doi.org/10.1145/301136.301150},
  doi          = {10.1145/301136.301150},
  timestamp    = {Tue, 06 Nov 2018 11:07:01 +0100},
  biburl       = {https://dblp.org/rec/conf/agents/El-NasirIY99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ca/El-NasrIYHP99,
  author       = {Magy Seif El{-}Nasr and
                  Thomas R. Ioerger and
                  John Yen and
                  Donald H. House and
                  Frederic I. Parke},
  title        = {Emotionally Expressive Agents},
  booktitle    = {Computer Animation 1999, {CA} 1999, Geneva, Switzerland, May 26-28,
                  1999},
  pages        = {48--57},
  publisher    = {{IEEE} Computer Society},
  year         = {1999},
  url          = {https://doi.org/10.1109/CA.1999.781198},
  doi          = {10.1109/CA.1999.781198},
  timestamp    = {Thu, 23 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ca/El-NasrIYHP99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cikm/WidyantoroIY99,
  author       = {Dwi H. Widyantoro and
                  Thomas R. Ioerger and
                  John Yen},
  title        = {An Adaptive Algorithm for Learning Changes in User Interests},
  booktitle    = {Proceedings of the 1999 {ACM} {CIKM} International Conference on Information
                  and Knowledge Management, Kansas City, Missouri, USA, November 2-6,
                  1999},
  pages        = {405--412},
  publisher    = {{ACM}},
  year         = {1999},
  url          = {https://doi.org/10.1145/319950.323230},
  doi          = {10.1145/319950.323230},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/cikm/WidyantoroIY99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/IoergerHCS99,
  author       = {Thomas R. Ioerger and
                  Thomas Holton and
                  Jon A. Christopher and
                  James C. Sacchettini},
  editor       = {Thomas Lengauer and
                  Reinhard Schneider and
                  Peer Bork and
                  Douglas L. Brutlag and
                  Janice I. Glasgow and
                  Hans{-}Werner Mewes and
                  Ralf Zimmer},
  title        = {{TEXTAL:} {A} Pattern Recognition System for Interpreting Electron
                  Density Maps},
  booktitle    = {Proceedings of the Seventh International Conference on Intelligent
                  Systems for Molecular Biology, August 6-10, 1999, Heidelberg, Germany},
  pages        = {130--137},
  publisher    = {{AAAI}},
  year         = {1999},
  url          = {http://www.aaai.org/Library/ISMB/1999/ismb99-016.php},
  timestamp    = {Mon, 24 Jun 2013 09:48:15 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/IoergerHCS99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/Ioerger97,
  author       = {Thomas R. Ioerger},
  editor       = {Benjamin Kuipers and
                  Bonnie L. Webber},
  title        = {Integrating a Spatial Reasoner with a Resolution Theorem-Prover},
  booktitle    = {Proceedings of the Fourteenth National Conference on Artificial Intelligence
                  and Ninth Innovative Applications of Artificial Intelligence Conference,
                  {AAAI} 97, {IAAI} 97, July 27-31, 1997, Providence, Rhode Island,
                  {USA}},
  pages        = {145--152},
  publisher    = {{AAAI} Press / The {MIT} Press},
  year         = {1997},
  url          = {http://www.aaai.org/Library/AAAI/1997/aaai97-023.php},
  timestamp    = {Tue, 05 Sep 2023 08:53:09 +0200},
  biburl       = {https://dblp.org/rec/conf/aaai/Ioerger97.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/Ioerger97,
  author       = {Thomas R. Ioerger},
  editor       = {Terry Gaasterland and
                  Peter D. Karp and
                  Kevin Karplus and
                  Christos A. Ouzounis and
                  Chris Sander and
                  Alfonso Valencia},
  title        = {The Context-Dependence of Amino Acid Properties},
  booktitle    = {Proceedings of the 5th International Conference on Intelligent Systems
                  for Molecular Biology, Halkidiki, Greece, June 21-26, 1997},
  pages        = {157--166},
  publisher    = {{AAAI}},
  year         = {1997},
  url          = {http://www.aaai.org/Library/ISMB/1997/ismb97-024.php},
  timestamp    = {Thu, 13 Dec 2012 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/Ioerger97.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ml/IoergerRS95,
  author       = {Thomas R. Ioerger and
                  Larry A. Rendell and
                  Shankar Subramaniam},
  title        = {Searching for Representations to Improve Protein Sequence Fold-Class
                  Prediction},
  journal      = {Mach. Learn.},
  volume       = {21},
  number       = {1-2},
  pages        = {151--175},
  year         = {1995},
  url          = {https://doi.org/10.1007/BF00993383},
  doi          = {10.1007/BF00993383},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ml/IoergerRS95.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cogsci/Ioerger94,
  author       = {Thomas R. Ioerger},
  title        = {The Manipulation of Images to Handle Indeterminacy in Spatial Reasoning},
  journal      = {Cogn. Sci.},
  volume       = {18},
  number       = {4},
  pages        = {551--593},
  year         = {1994},
  url          = {https://doi.org/10.1207/s15516709cog1804\_2},
  doi          = {10.1207/S15516709COG1804\_2},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cogsci/Ioerger94.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/IoergerRS93,
  author       = {Thomas R. Ioerger and
                  Larry A. Rendell and
                  Shankar Subramaniam},
  editor       = {Lawrence Hunter and
                  David B. Searls and
                  Jude W. Shavlik},
  title        = {Constructive Induction and Protein Tertiary Structure Prediction},
  booktitle    = {Proceedings of the 1st International Conference on Intelligent Systems
                  for Molecular Biology, Bethesda, MD, USA, July 1993},
  pages        = {198--206},
  publisher    = {{AAAI}},
  year         = {1993},
  url          = {http://www.aaai.org/Library/ISMB/1993/ismb93-023.php},
  timestamp    = {Thu, 13 Dec 2012 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/IoergerRS93.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}