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@inproceedings{DBLP:conf/iclr/LiuYSW024,
author = {Xuefeng Liu and
Takuma Yoneda and
Rick Stevens and
Matthew R. Walter and
Yuxin Chen},
title = {Blending Imitation and Reinforcement Learning for Robust Policy Improvement},
booktitle = {The Twelfth International Conference on Learning Representations,
{ICLR} 2024, Vienna, Austria, May 7-11, 2024},
publisher = {OpenReview.net},
year = {2024},
url = {https://openreview.net/forum?id=eJ0dzPJq1F},
timestamp = {Mon, 29 Jul 2024 16:19:40 +0200},
biburl = {https://dblp.org/rec/conf/iclr/LiuYSW024.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/LiuTDJS24,
author = {Xuefeng Liu and
Chih{-}chan Tien and
Peng Ding and
Songhao Jiang and
Rick L. Stevens},
title = {Entropy-Reinforced Planning with Large Language Models for Drug Discovery},
booktitle = {Forty-first International Conference on Machine Learning, {ICML} 2024,
Vienna, Austria, July 21-27, 2024},
publisher = {OpenReview.net},
year = {2024},
url = {https://openreview.net/forum?id=F3Ds71Xgo1},
timestamp = {Mon, 02 Sep 2024 16:45:29 +0200},
biburl = {https://dblp.org/rec/conf/icml/LiuTDJS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/VasanGBRBSV24,
author = {Archit Vasan and
Ozan G{\"{o}}kdemir and
Alexander Brace and
Arvind Ramanathan and
Thomas S. Brettin and
Rick Stevens and
Venkatram Vishwanath},
title = {High Performance Binding Affinity Prediction with a Transformer-Based
Surrogate Model},
booktitle = {{IEEE} International Parallel and Distributed Processing Symposium,
{IPDPS} 2024 - Workshop, San Francisco, CA, USA, May 27-31, 2024},
pages = {571--580},
publisher = {{IEEE}},
year = {2024},
url = {https://doi.org/10.1109/IPDPSW63119.2024.00114},
doi = {10.1109/IPDPSW63119.2024.00114},
timestamp = {Wed, 07 Aug 2024 14:14:07 +0200},
biburl = {https://dblp.org/rec/conf/ipps/VasanGBRBSV24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2402-03480,
author = {Nathaniel Hudson and
J. Gregory Pauloski and
Matt Baughman and
Alok Kamatar and
Mansi Sakarvadia and
Logan T. Ward and
Ryan Chard and
Andr{\'{e}} Bauer and
Maksim Levental and
Wenyi Wang and
Will Engler and
Owen Price Skelly and
Ben Blaiszik and
Rick Stevens and
Kyle Chard and
Ian T. Foster},
title = {Trillion Parameter {AI} Serving Infrastructure for Scientific Discovery:
{A} Survey and Vision},
journal = {CoRR},
volume = {abs/2402.03480},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2402.03480},
doi = {10.48550/ARXIV.2402.03480},
eprinttype = {arXiv},
eprint = {2402.03480},
timestamp = {Mon, 12 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2402-03480.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2406-06348,
author = {Ashka Shah and
Adela DePavia and
Nathaniel Hudson and
Ian T. Foster and
Rick Stevens},
title = {Causal Discovery over High-Dimensional Structured Hypothesis Spaces
with Causal Graph Partitioning},
journal = {CoRR},
volume = {abs/2406.06348},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2406.06348},
doi = {10.48550/ARXIV.2406.06348},
eprinttype = {arXiv},
eprint = {2406.06348},
timestamp = {Sat, 13 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2406-06348.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2406-07025,
author = {Xuefeng Liu and
Chih{-}chan Tien and
Peng Ding and
Songhao Jiang and
Rick L. Stevens},
title = {Entropy-Reinforced Planning with Large Language Models for Drug Discovery},
journal = {CoRR},
volume = {abs/2406.07025},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2406.07025},
doi = {10.48550/ARXIV.2406.07025},
eprinttype = {arXiv},
eprint = {2406.07025},
timestamp = {Mon, 08 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2406-07025.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cgf/KaleCSRSP23,
author = {Bharat Kale and
Austin Clyde and
Maoyuan Sun and
Arvind Ramanathan and
Rick Stevens and
Michael E. Papka},
title = {ChemoGraph: Interactive Visual Exploration of the Chemical Space},
journal = {Comput. Graph. Forum},
volume = {42},
number = {3},
pages = {13--24},
year = {2023},
url = {https://doi.org/10.1111/cgf.14807},
doi = {10.1111/CGF.14807},
timestamp = {Mon, 01 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cgf/KaleCSRSP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijhpca/ZvyaginBHDZBCKPMMIOVPWHEFXLSNRDV23,
author = {Maxim Zvyagin and
Alexander Brace and
Kyle Hippe and
Yuntian Deng and
Bin Zhang and
Cindy Orozco Bohorquez and
Austin Clyde and
Bharat Kale and
Danilo Perez{-}Rivera and
Heng Ma and
Carla M. Mann and
Michael W. Irvin and
Defne G. Ozgulbas and
Natalia Vassilieva and
J. Gregory Pauloski and
Logan T. Ward and
Val{\'{e}}rie Hayot{-}Sasson and
Murali Emani and
Sam Foreman and
Zhen Xie and
Diangen Lin and
Maulik Shukla and
Weili Nie and
Josh Romero and
Christian Dallago and
Arash Vahdat and
Chaowei Xiao and
Thomas Gibbs and
Ian T. Foster and
James J. Davis and
Michael E. Papka and
Thomas S. Brettin and
Rick Stevens and
Anima Anandkumar and
Venkatram Vishwanath and
Arvind Ramanathan},
title = {GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary
dynamics},
journal = {Int. J. High Perform. Comput. Appl.},
volume = {37},
number = {6},
pages = {683--705},
year = {2023},
url = {https://doi.org/10.1177/10943420231201154},
doi = {10.1177/10943420231201154},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijhpca/ZvyaginBHDZBCKPMMIOVPWHEFXLSNRDV23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/OlsonABCCDDDDKKLLMMMNNOOPPPPSSSTTVV23,
author = {Robert D. Olson and
Rida Assaf and
Thomas S. Brettin and
Neal Conrad and
Clark Cucinell and
James J. Davis and
Donald M. Dempsey and
Allan Dickerman and
Emily M. Dietrich and
Ronald W. Kenyon and
Mehmet Kuscuoglu and
Elliot J. Lefkowitz and
Jian Lu and
Dustin Machi and
Catherine Macken and
Chunhong Mao and
Anna Maria Niewiadomska and
Marcus Nguyen and
Gary J. Olsen and
Jamie C. Overbeek and
Bruce D. Parrello and
Victoria Parrello and
Jacob s Porter and
Gordon D. Pusch and
Maulik Shukla and
Indresh Singh and
Lucy Stewart and
Gene Tan and
Chris Thomas and
Margo VanOeffelen and
Veronika Vonstein and
Zachary S. Wallace and
Andrew S. Warren and
Alice R. Wattam and
Fangfang Xia and
Hyun Seung Yoo and
Yun Zhang and
Christian M. Zmasek and
Richard H. Scheuermann and
Rick L. Stevens},
title = {Introducing the Bacterial and Viral Bioinformatics Resource Center
{(BV-BRC):} a resource combining PATRIC, {IRD} and ViPR},
journal = {Nucleic Acids Res.},
volume = {51},
number = {{D1}},
pages = {678--689},
year = {2023},
url = {https://doi.org/10.1093/nar/gkac1003},
doi = {10.1093/NAR/GKAC1003},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/OlsonABCCDDDDKKLLMMMNNOOPPPPSSSTTVV23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bdc/HudsonPBKSWC0LW23,
author = {Nathaniel Hudson and
J. Gregory Pauloski and
Matt Baughman and
Alok Kamatar and
Mansi Sakarvadia and
Logan T. Ward and
Ryan Chard and
Andr{\'{e}} Bauer and
Maksim Levental and
Wenyi Wang and
Will Engler and
Owen Price Skelly and
Ben Blaiszik and
Rick Stevens and
Kyle Chard and
Ian T. Foster},
title = {Trillion Parameter {AI} Serving Infrastructure for Scientific Discovery:
{A} Survey and Vision},
booktitle = {Proceedings of the {IEEE/ACM} 10th International Conference on Big
Data Computing, Applications and Technologies, {BDCAT} 2023, Taormina
(Messina), Italy, December 4-7, 2023},
pages = {15:1--15:10},
publisher = {{ACM}},
year = {2023},
url = {https://doi.org/10.1145/3632366.3632396},
doi = {10.1145/3632366.3632396},
timestamp = {Mon, 15 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bdc/HudsonPBKSWC0LW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eScience/WozniakJWWPBS23,
author = {Justin M. Wozniak and
Rajeev Jain and
Andreas Wilke and
Rylie Weaver and
Alexander Partin and
Thomas S. Brettin and
Rick Stevens},
title = {An Automation Framework for Comparison of Cancer Response Models Across
Configurations},
booktitle = {19th {IEEE} International Conference on e-Science, e-Science 2023,
Limassol, Cyprus, October 9-13, 2023},
pages = {1--10},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/e-Science58273.2023.10254830},
doi = {10.1109/E-SCIENCE58273.2023.10254830},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/eScience/WozniakJWWPBS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmla/ChenRKCCQYCRSDL23,
author = {Wei Chen and
Yihui Ren and
Ai Kagawa and
Matthew R. Carbone and
Samuel Yen{-}Chi Chen and
Xiaohui Qu and
Shinjae Yoo and
Austin Clyde and
Arvind Ramanathan and
Rick L. Stevens and
Hubertus Van Dam and
Deyu Lu},
title = {Transferable Graph Neural Fingerprint Models for Quick Response to
Future Bio-Threats},
booktitle = {International Conference on Machine Learning and Applications, {ICMLA}
2023, Jacksonville, FL, USA, December 15-17, 2023},
pages = {800--807},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/ICMLA58977.2023.00117},
doi = {10.1109/ICMLA58977.2023.00117},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icmla/ChenRKCCQYCRSDL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/WeberSBATTJFLS023,
author = {Maurice Weber and
Carlo Siebenschuh and
Rory Butler and
Anton Alexandrov and
Valdemar Thanner and
Georgios Tsolakis and
Haris Jabbar and
Ian T. Foster and
Bo Li and
Rick Stevens and
Ce Zhang},
editor = {Alice Oh and
Tristan Naumann and
Amir Globerson and
Kate Saenko and
Moritz Hardt and
Sergey Levine},
title = {WordScape: a Pipeline to extract multilingual, visually rich Documents
with Layout Annotations from Web Crawl Data},
booktitle = {Advances in Neural Information Processing Systems 36: Annual Conference
on Neural Information Processing Systems 2023, NeurIPS 2023, New Orleans,
LA, USA, December 10 - 16, 2023},
year = {2023},
url = {http://papers.nips.cc/paper\_files/paper/2023/hash/52c1ce1a0eaf61e8b6e3a899c1b9c61f-Abstract-Datasets\_and\_Benchmarks.html},
timestamp = {Tue, 23 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/nips/WeberSBATTJFLS023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pasc/ShahRHS23,
author = {Ashka Shah and
Arvind Ramanathan and
Val{\'{e}}rie Hayot{-}Sasson and
Rick Stevens},
editor = {Axel Huebl and
Cristina Silvano and
Timothy Robinson},
title = {Causal Discovery and Optimal Experimental Design for Genome-Scale
Biological Network Recovery},
booktitle = {Proceedings of the Platform for Advanced Scientific Computing Conference,
{PASC} 2023, Davos, Switzerland, June 26-28, 2023},
pages = {1:1--1:11},
publisher = {{ACM}},
year = {2023},
url = {https://doi.org/10.1145/3592979.3593400},
doi = {10.1145/3592979.3593400},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/pasc/ShahRHS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/NarykovZBEPSVDS23,
author = {Oleksandr Narykov and
Yitan Zhu and
Thomas S. Brettin and
Yvonne A. Evrard and
Alexander Partin and
Maulik Shukla and
Priyanka Vasanthakumari and
James H. Doroshow and
Rick Stevens},
title = {Entropy-Based Regularization on Deep Learning Models for Anti-Cancer
Drug Response Prediction},
booktitle = {Proceedings of the {SC} '23 Workshops of The International Conference
on High Performance Computing, Network, Storage, and Analysis, {SC-W}
2023, Denver, CO, USA, November 12-17, 2023},
pages = {121--122},
publisher = {{ACM}},
year = {2023},
url = {https://doi.org/10.1145/3624062.3624080},
doi = {10.1145/3624062.3624080},
timestamp = {Tue, 28 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/NarykovZBEPSVDS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/VasanBSRV23,
author = {Archit Vasan and
Thomas S. Brettin and
Rick Stevens and
Arvind Ramanathan and
Venkatram Vishwanath},
title = {Scalable Lead Prediction with Transformers using {HPC} resources},
booktitle = {Proceedings of the {SC} '23 Workshops of The International Conference
on High Performance Computing, Network, Storage, and Analysis, {SC-W}
2023, Denver, CO, USA, November 12-17, 2023},
pages = {123},
publisher = {{ACM}},
year = {2023},
url = {https://doi.org/10.1145/3624062.3624081},
doi = {10.1145/3624062.3624081},
timestamp = {Tue, 28 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/VasanBSRV23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/whispers/HeXS23,
author = {Miao Tony He and
Fangfang Xia and
Rick L. Stevens},
title = {Deep Fair Partition for Hyperspectral Image Classification},
booktitle = {13th Workshop on Hyperspectral Imaging and Signal Processing: Evolution
in Remote Sensing, {WHISPERS} 2023, Athens, Greece, October 31 - November
2, 2023},
pages = {1--12},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/WHISPERS61460.2023.10431031},
doi = {10.1109/WHISPERS61460.2023.10431031},
timestamp = {Fri, 01 Mar 2024 14:06:59 +0100},
biburl = {https://dblp.org/rec/conf/whispers/HeXS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2304-03210,
author = {Ashka Shah and
Arvind Ramanathan and
Val{\'{e}}rie Hayot{-}Sasson and
Rick Stevens},
title = {Causal Discovery and Optimal Experimental Design for Genome-Scale
Biological Network Recovery},
journal = {CoRR},
volume = {abs/2304.03210},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2304.03210},
doi = {10.48550/ARXIV.2304.03210},
eprinttype = {arXiv},
eprint = {2304.03210},
timestamp = {Thu, 20 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2304-03210.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2308-01921,
author = {Wei Chen and
Yihui Ren and
Ai Kagawa and
Matthew R. Carbone and
Samuel Yen{-}Chi Chen and
Xiaohui Qu and
Shinjae Yoo and
Austin Clyde and
Arvind Ramanathan and
Rick L. Stevens and
Hubertus Johannes Jacobus Van Dam and
Deyu Lu},
title = {Transferable Graph Neural Fingerprint Models for Quick Response to
Future Bio-Threats},
journal = {CoRR},
volume = {abs/2308.01921},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2308.01921},
doi = {10.48550/ARXIV.2308.01921},
eprinttype = {arXiv},
eprint = {2308.01921},
timestamp = {Tue, 05 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2308-01921.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2308-09793,
author = {Rafael Vescovi and
Tobias Ginsburg and
Kyle Hippe and
Doga Ozgulbas and
Casey Stone and
Abraham Stroka and
Rory Butler and
Ben Blaiszik and
Tom Brettin and
Kyle Chard and
Mark Hereld and
Arvind Ramanathan and
Rick Stevens and
Aikaterini Vriza and
Jie Xu and
Qingteng Zhang and
Ian T. Foster},
title = {Towards a Modular Architecture for Science Factories},
journal = {CoRR},
volume = {abs/2308.09793},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2308.09793},
doi = {10.48550/ARXIV.2308.09793},
eprinttype = {arXiv},
eprint = {2308.09793},
timestamp = {Fri, 25 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2308-09793.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2310-01737,
author = {Xuefeng Liu and
Takuma Yoneda and
Rick L. Stevens and
Matthew R. Walter and
Yuxin Chen},
title = {Blending Imitation and Reinforcement Learning for Robust Policy Improvement},
journal = {CoRR},
volume = {abs/2310.01737},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2310.01737},
doi = {10.48550/ARXIV.2310.01737},
eprinttype = {arXiv},
eprint = {2310.01737},
timestamp = {Thu, 19 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2310-01737.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2310-04610,
author = {Shuaiwen Leon Song and
Bonnie Kruft and
Minjia Zhang and
Conglong Li and
Shiyang Chen and
Chengming Zhang and
Masahiro Tanaka and
Xiaoxia Wu and
Jeff Rasley and
Ammar Ahmad Awan and
Connor Holmes and
Martin Cai and
Adam Ghanem and
Zhongzhu Zhou and
Yuxiong He and
Pete Luferenko and
Divya Kumar and
Jonathan A. Weyn and
Ruixiong Zhang and
Sylwester Klocek and
Volodymyr Vragov and
Mohammed AlQuraishi and
Gustaf Ahdritz and
Christina Floristean and
Cristina Negri and
Rao Kotamarthi and
Venkatram Vishwanath and
Arvind Ramanathan and
Sam Foreman and
Kyle Hippe and
Troy Arcomano and
Romit Maulik and
Maxim Zvyagin and
Alexander Brace and
Bin Zhang and
Cindy Orozco Bohorquez and
Austin Clyde and
Bharat Kale and
Danilo Perez{-}Rivera and
Heng Ma and
Carla M. Mann and
Michael W. Irvin and
J. Gregory Pauloski and
Logan T. Ward and
Val{\'{e}}rie Hayot{-}Sasson and
Murali Emani and
Zhen Xie and
Diangen Lin and
Maulik Shukla and
Ian T. Foster and
James J. Davis and
Michael E. Papka and
Thomas S. Brettin and
Prasanna Balaprakash and
Gina Tourassi and
John Gounley and
Heidi A. Hanson and
Thomas E. Potok and
Massimiliano Lupo Pasini and
Kate Evans and
Dan Lu and
Dalton D. Lunga and
Junqi Yin and
Sajal Dash and
Feiyi Wang and
Mallikarjun Shankar and
Isaac Lyngaas and
Xiao Wang and
Guojing Cong and
Pei Zhang and
Ming Fan and
Siyan Liu and
Adolfy Hoisie and
Shinjae Yoo and
Yihui Ren and
William Tang and
Kyle Felker and
Alexey Svyatkovskiy and
Hang Liu and
Ashwin M. Aji and
Angela Dalton and
Michael J. Schulte and
Karl Schulz and
Yuntian Deng and
Weili Nie and
Josh Romero and
Christian Dallago and
Arash Vahdat and
Chaowei Xiao and
Thomas Gibbs and
Anima Anandkumar and
Rick Stevens},
title = {DeepSpeed4Science Initiative: Enabling Large-Scale Scientific Discovery
through Sophisticated {AI} System Technologies},
journal = {CoRR},
volume = {abs/2310.04610},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2310.04610},
doi = {10.48550/ARXIV.2310.04610},
eprinttype = {arXiv},
eprint = {2310.04610},
timestamp = {Fri, 23 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2310-04610.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2312-10188,
author = {Maurice Weber and
Carlo Siebenschuh and
Rory Butler and
Anton Alexandrov and
Valdemar Thanner and
Georgios Tsolakis and
Haris Jabbar and
Ian T. Foster and
Bo Li and
Rick Stevens and
Ce Zhang},
title = {WordScape: a Pipeline to extract multilingual, visually rich Documents
with Layout Annotations from Web Crawl Data},
journal = {CoRR},
volume = {abs/2312.10188},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2312.10188},
doi = {10.48550/ARXIV.2312.10188},
eprinttype = {arXiv},
eprint = {2312.10188},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2312-10188.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/XiaABBGCCDDDEFG22,
author = {Fangfang Xia and
Jonathan E. Allen and
Prasanna Balaprakash and
Thomas S. Brettin and
Cristina Garcia{-}Cardona and
Austin Clyde and
Judith D. Cohn and
James H. Doroshow and
Xiaotian Duan and
Veronika Dubinkina and
Yvonne A. Evrard and
Ya Ju Fan and
Jason Gans and
Stewart He and
Pinyi Lu and
Sergei Maslov and
Alexander Partin and
Maulik Shukla and
Eric A. Stahlberg and
Justin M. Wozniak and
Hyun Seung Yoo and
George F. Zaki and
Yitan Zhu and
Rick Stevens},
title = {A cross-study analysis of drug response prediction in cancer cell
lines},
journal = {Briefings Bioinform.},
volume = {23},
number = {1},
year = {2022},
url = {https://doi.org/10.1093/bib/bbab356},
doi = {10.1093/BIB/BBAB356},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/XiaABBGCCDDDEFG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/WallaceDNOSSZZS22,
author = {Zachary S. Wallace and
James J. Davis and
Anna Maria Niewiadomska and
Robert D. Olson and
Maulik Shukla and
Rick Stevens and
Yun Zhang and
Christian M. Zmasek and
Richard H. Scheuermann},
title = {Early detection of emerging SARS-CoV-2 variants of interest for experimental
evaluation},
journal = {Frontiers Bioinform.},
volume = {2},
year = {2022},
url = {https://doi.org/10.3389/fbinf.2022.1020189},
doi = {10.3389/FBINF.2022.1020189},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fbinf/WallaceDNOSSZZS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijhpca/TrifanGSLBZMCCH22,
author = {Anda Trifan and
Defne Gorgun and
Michael Salim and
Zongyi Li and
Alexander Brace and
Maxim Zvyagin and
Heng Ma and
Austin Clyde and
David Clark and
David J. Hardy and
Tom Burnley and
Lei Huang and
John D. McCalpin and
Murali Emani and
Hyenseung Yoo and
Junqi Yin and
Aristeidis Tsaris and
Vishal Subbiah and
Tanveer Raza and
Jessica Liu and
Noah Trebesch and
Geoffrey Wells and
Venkatesh Mysore and
Tom Gibbs and
James C. Phillips and
S. Chakra Chennubhotla and
Ian T. Foster and
Rick Stevens and
Anima Anandkumar and
Venkatram Vishwanath and
John E. Stone and
Emad Tajkhorshid and
Sarah A. Harris and
Arvind Ramanathan},
title = {Intelligent resolution: Integrating Cryo-EM with AI-driven multi-resolution
simulations to observe the severe acute respiratory syndrome coronavirus-2
replication-transcription machinery in action},
journal = {Int. J. High Perform. Comput. Appl.},
volume = {36},
number = {5-6},
pages = {603--623},
year = {2022},
url = {https://doi.org/10.1177/10943420221113513},
doi = {10.1177/10943420221113513},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijhpca/TrifanGSLBZMCCH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/ClydeGKMBBBBCCC22,
author = {Austin Clyde and
Stephanie Galanie and
Daniel W. Kneller and
Heng Ma and
Yadu N. Babuji and
Ben Blaiszik and
Alexander Brace and
Thomas S. Brettin and
Kyle Chard and
Ryan Chard and
Leighton Coates and
Ian T. Foster and
Darin Hauner and
Vilmos Kertesz and
Neeraj Kumar and
Hyungro Lee and
Zhuozhao Li and
Andr{\'{e}} Merzky and
Jurgen G. Schmidt and
Li Tan and
Mikhail Titov and
Anda Trifan and
Matteo Turilli and
Hubertus Van Dam and
Srinivas C. Chennubhotla and
Shantenu Jha and
Andrey Kovalevsky and
Arvind Ramanathan and
Martha S. Head and
Rick Stevens},
title = {High-Throughput Virtual Screening and Validation of a SARS-CoV-2 Main
Protease Noncovalent Inhibitor},
journal = {J. Chem. Inf. Model.},
volume = {62},
number = {1},
pages = {116--128},
year = {2022},
url = {https://doi.org/10.1021/acs.jcim.1c00851},
doi = {10.1021/ACS.JCIM.1C00851},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/ClydeGKMBBBBCCC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/WuCCCPVSCBJKHSN22,
author = {Yulun Wu and
Nicholas Choma and
Andrew Deru Chen and
Mikaela Cashman and
{\'{E}}rica Teixeira Prates and
Ver{\'{o}}nica G. Melesse Vergara and
Manesh Shah and
Austin Clyde and
Thomas S. Brettin and
Wibe Albert de Jong and
Neeraj Kumar and
Martha S. Head and
Rick L. Stevens and
Peter Nugent and
Daniel A. Jacobson and
James B. Brown},
title = {Spatial Graph Attention and Curiosity-driven Policy for Antiviral
Drug Discovery},
booktitle = {The Tenth International Conference on Learning Representations, {ICLR}
2022, Virtual Event, April 25-29, 2022},
publisher = {OpenReview.net},
year = {2022},
url = {https://openreview.net/forum?id=kavTY\_\_jxp},
timestamp = {Sat, 20 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iclr/WuCCCPVSCBJKHSN22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2207-06030,
author = {Xuefeng Liu and
Fangfang Xia and
Rick L. Stevens and
Yuxin Chen},
title = {Cost-Effective Online Contextual Model Selection},
journal = {CoRR},
volume = {abs/2207.06030},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2207.06030},
doi = {10.48550/ARXIV.2207.06030},
eprinttype = {arXiv},
eprint = {2207.06030},
timestamp = {Tue, 25 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2207-06030.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2211-10442,
author = {Alexander Partin and
Thomas S. Brettin and
Yitan Zhu and
Oleksandr Narykov and
Austin Clyde and
Jamie Overbeek and
Rick L. Stevens},
title = {Deep learning methods for drug response prediction in cancer: predominant
and emerging trends},
journal = {CoRR},
volume = {abs/2211.10442},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2211.10442},
doi = {10.48550/ARXIV.2211.10442},
eprinttype = {arXiv},
eprint = {2211.10442},
timestamp = {Thu, 24 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2211-10442.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/VanOeffelenNABD21,
author = {Margo VanOeffelen and
Marcus Nguyen and
Derya Aytan{-}Aktug and
Thomas S. Brettin and
Emily M. Dietrich and
Ronald W. Kenyon and
Dustin Machi and
Chunhong Mao and
Robert Olson and
Gordon D. Pusch and
Maulik Shukla and
Rick Stevens and
Veronika Vonstein and
Andrew S. Warren and
Alice R. Wattam and
Hyun Seung Yoo and
James J. Davis},
title = {A genomic data resource for predicting antimicrobial resistance from
laboratory-derived antimicrobial susceptibility phenotypes},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab313},
doi = {10.1093/BIB/BBAB313},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/VanOeffelenNABD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PartinBEZYXJCSF21,
author = {Alexander Partin and
Thomas S. Brettin and
Yvonne A. Evrard and
Yitan Zhu and
Hyun Seung Yoo and
Fangfang Xia and
Songhao Jiang and
Austin Clyde and
Maulik Shukla and
Michael Fonstein and
James H. Doroshow and
Rick L. Stevens},
title = {Learning curves for drug response prediction in cancer cell lines},
journal = {{BMC} Bioinform.},
volume = {22},
number = {1},
pages = {252},
year = {2021},
url = {https://doi.org/10.1186/s12859-021-04163-y},
doi = {10.1186/S12859-021-04163-Y},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PartinBEZYXJCSF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cse/EmaniVAPSFJLNSK21,
author = {Murali Emani and
Venkatram Vishwanath and
Corey Adams and
Michael E. Papka and
Rick Stevens and
Laura Florescu and
Sumti Jairath and
William Liu and
Tejas Nama and
Arvind Sujeeth and
Volodymyr V. Kindratenko and
Anne C. Elster},
title = {Accelerating Scientific Applications With SambaNova Reconfigurable
Dataflow Architecture},
journal = {Comput. Sci. Eng.},
volume = {23},
number = {2},
pages = {114--119},
year = {2021},
url = {https://doi.org/10.1109/MCSE.2021.3057203},
doi = {10.1109/MCSE.2021.3057203},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cse/EmaniVAPSFJLNSK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icons2/ZhaoWGSX21,
author = {Zixuan Zhao and
Nathan Wycoff and
Neil Getty and
Rick Stevens and
Fangfang Xia},
editor = {Thomas E. Potok and
Melika Payvand and
Catherine D. Schuman and
Prasanna Date and
Mutsumi Kimura and
Cory E. Merkel and
Brad Aimone and
Sonia M. Buckley and
Yiran Chen and
Gregory Cohen and
Todd Hylton and
Robert M. Patton and
Robinson E. Pino and
Garrett S. Rose},
title = {Neko: a Library for Exploring Neuromorphic Learning Rules},
booktitle = {{ICONS} 2021: International Conference on Neuromorphic Systems 2021,
Knoxville, TN, USA, July 27-29, 2021},
pages = {9:1--9:5},
publisher = {{ACM}},
year = {2021},
url = {https://doi.org/10.1145/3477145.3477155},
doi = {10.1145/3477145.3477155},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icons2/ZhaoWGSX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icpp/SaadiABBBBBCCCC21,
author = {Aymen Al Saadi and
Dario Alf{\`{e}} and
Yadu N. Babuji and
Agastya Bhati and
Ben Blaiszik and
Alexander Brace and
Thomas S. Brettin and
Kyle Chard and
Ryan Chard and
Austin Clyde and
Peter V. Coveney and
Ian T. Foster and
Tom Gibbs and
Shantenu Jha and
Kristopher Keipert and
Dieter Kranzlm{\"{u}}ller and
Thorsten Kurth and
Hyungro Lee and
Zhuozhao Li and
Heng Ma and
Gerald Mathias and
Andr{\'{e}} Merzky and
Alexander Partin and
Arvind Ramanathan and
Ashka Shah and
Abraham C. Stern and
Rick Stevens and
Li Tan and
Mikhail Titov and
Anda Trifan and
Aristeidis Tsaris and
Matteo Turilli and
Huub J. J. Van Dam and
Shunzhou Wan and
David Wifling and
Junqi Yin},
editor = {Xian{-}He Sun and
Sameer Shende and
Laxmikant V. Kal{\'{e}} and
Yong Chen},
title = {{IMPECCABLE:} Integrated Modeling PipelinE for {COVID} Cure by Assessing
Better LEads},
booktitle = {{ICPP} 2021: 50th International Conference on Parallel Processing,
Lemont, IL, USA, August 9 - 12, 2021},
pages = {40:1--40:12},
publisher = {{ACM}},
year = {2021},
url = {https://doi.org/10.1145/3472456.3473524},
doi = {10.1145/3472456.3473524},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icpp/SaadiABBBBBCCCC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pasc/LeeMTTTABBCCMRS21,
author = {Hyungro Lee and
Andr{\'{e}} Merzky and
Li Tan and
Mikhail Titov and
Matteo Turilli and
Dario Alf{\`{e}} and
Agastya Bhati and
Alex Brace and
Austin Clyde and
Peter V. Coveney and
Heng Ma and
Arvind Ramanathan and
Rick Stevens and
Anda Trifan and
Hubertus Van Dam and
Shunzhou Wan and
Sean R. Wilkinson and
Shantenu Jha},
editor = {Timothy Robinson},
title = {Scalable {HPC} {\&} {AI} infrastructure for {COVID-19} therapeutics},
booktitle = {{PASC} '21: Platform for Advanced Scientific Computing Conference,
Geneva, Switzerland, July 5-9, 2021},
pages = {2:1--2:13},
publisher = {{ACM}},
year = {2021},
url = {https://doi.org/10.1145/3468267.3470573},
doi = {10.1145/3468267.3470573},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/pasc/LeeMTTTABBCCMRS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/EgeleBGVXSL21,
author = {Romain {\'{E}}gel{\'{e}} and
Prasanna Balaprakash and
Isabelle Guyon and
Venkatram Vishwanath and
Fangfang Xia and
Rick Stevens and
Zhengying Liu},
editor = {Bronis R. de Supinski and
Mary W. Hall and
Todd Gamblin},
title = {AgEBO-tabular: joint neural architecture and hyperparameter search
with autotuned data-parallel training for tabular data},
booktitle = {International Conference for High Performance Computing, Networking,
Storage and Analysis, {SC} 2021, St. Louis, Missouri, USA, November
14-19, 2021},
pages = {30},
publisher = {{ACM}},
year = {2021},
url = {https://doi.org/10.1145/3458817.3476203},
doi = {10.1145/3458817.3476203},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sc/EgeleBGVXSL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2103-02843,
author = {Agastya P. Bhati and
Shunzhou Wan and
Dario Alf{\`{e}} and
Austin R. Clyde and
Mathis Bode and
Li Tan and
Mikhail Titov and
Andr{\'{e}} Merzky and
Matteo Turilli and
Shantenu Jha and
Roger R. Highfield and
Walter Rocchia and
Nicola Scafuri and
Sauro Succi and
Dieter Kranzlm{\"{u}}ller and
Gerald Mathias and
David Wifling and
Yann Donon and
Alberto Di Meglio and
Sofia Vallecorsa and
Heng Ma and
Anda Trifan and
Arvind Ramanathan and
Tom Brettin and
Alexander Partin and
Fangfang Xia and
Xiaotan Duan and
Rick Stevens and
Peter V. Coveney},
title = {Pandemic Drugs at Pandemic Speed: Accelerating {COVID-19} Drug Discovery
with Hybrid Machine Learning- and Physics-based Simulations on High
Performance Computers},
journal = {CoRR},
volume = {abs/2103.02843},
year = {2021},
url = {https://arxiv.org/abs/2103.02843},
eprinttype = {arXiv},
eprint = {2103.02843},
timestamp = {Mon, 15 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2103-02843.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2103-06867,
author = {Austin Clyde and
Arvind Ramanathan and
Rick Stevens},
title = {Scaffold Embeddings: Learning the Structure Spanned by Chemical Fragments,
Scaffolds and Compounds},
journal = {CoRR},
volume = {abs/2103.06867},
year = {2021},
url = {https://arxiv.org/abs/2103.06867},
eprinttype = {arXiv},
eprint = {2103.06867},
timestamp = {Tue, 16 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2103-06867.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2105-00324,
author = {Zixuan Zhao and
Nathan Wycoff and
Neil Getty and
Rick Stevens and
Fangfang Xia},
title = {Neko: a Library for Exploring Neuromorphic Learning Rules},
journal = {CoRR},
volume = {abs/2105.00324},
year = {2021},
url = {https://arxiv.org/abs/2105.00324},
eprinttype = {arXiv},
eprint = {2105.00324},
timestamp = {Wed, 12 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2105-00324.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-02190,
author = {Yulun Wu and
Nicholas Choma and
Andrew Deru Chen and
Mikaela Cashman and
{\'{E}}rica T. Prates and
Manesh Shah and
Ver{\'{o}}nica G. Melesse Vergara and
Austin Clyde and
Thomas S. Brettin and
Wibe A. de Jong and
Neeraj Kumar and
Martha S. Head and
Rick L. Stevens and
Peter Nugent and
Daniel A. Jacobson and
James B. Brown},
title = {Spatial Graph Attention and Curiosity-driven Policy for Antiviral
Drug Discovery},
journal = {CoRR},
volume = {abs/2106.02190},
year = {2021},
url = {https://arxiv.org/abs/2106.02190},
eprinttype = {arXiv},
eprint = {2106.02190},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2106-02190.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-07036,
author = {Austin Clyde and
Thomas S. Brettin and
Alexander Partin and
Hyun Seung Yoo and
Yadu N. Babuji and
Ben Blaiszik and
Andr{\'{e}} Merzky and
Matteo Turilli and
Shantenu Jha and
Arvind Ramanathan and
Rick Stevens},
title = {Protein-Ligand Docking Surrogate Models: {A} SARS-CoV-2 Benchmark
for Deep Learning Accelerated Virtual Screening},
journal = {CoRR},
volume = {abs/2106.07036},
year = {2021},
url = {https://arxiv.org/abs/2106.07036},
eprinttype = {arXiv},
eprint = {2106.07036},
timestamp = {Wed, 16 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2106-07036.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2111-13786,
author = {Luca Pion{-}Tonachini and
Kristofer E. Bouchard and
H{\'{e}}ctor Garc{\'{\i}}a Mart{\'{\i}}n and
Sean Peisert and
W. Bradley Holtz and
Anil Aswani and
Dipankar Dwivedi and
Haruko M. Wainwright and
Ghanshyam Pilania and
Benjamin Nachman and
Babetta L. Marrone and
Nicola Falco and
Prabhat and
Daniel B. Arnold and
Alejandro Wolf{-}Yadlin and
Sarah Powers and
Sharlee Climer and
Quinn Jackson and
Ty Carlson and
Michael Sohn and
Petrus H. Zwart and
Neeraj Kumar and
Amy Justice and
Claire J. Tomlin and
Daniel A. Jacobson and
Gos Micklem and
Georgios V. Gkoutos and
Peter J. Bickel and
Jean{-}Baptiste Cazier and
Juliane M{\"{u}}ller and
Bobbie{-}Jo Webb{-}Robertson and
Rick Stevens and
Mark Anderson and
Kenneth Kreutz{-}Delgado and
Michael W. Mahoney and
James B. Brown},
title = {Learning from learning machines: a new generation of {AI} technology
to meet the needs of science},
journal = {CoRR},
volume = {abs/2111.13786},
year = {2021},
url = {https://arxiv.org/abs/2111.13786},
eprinttype = {arXiv},
eprint = {2111.13786},
timestamp = {Thu, 06 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2111-13786.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/0002WABBBCCDDGG20,
author = {James J. Davis and
Alice R. Wattam and
Ramy K. Aziz and
Thomas S. Brettin and
Ralph Butler and
Rory Butler and
Philippe Chlenski and
Neal Conrad and
Allan Dickerman and
Emily M. Dietrich and
Joseph L. Gabbard and
Svetlana Gerdes and
Andrew Guard and
Ronald W. Kenyon and
Dustin Machi and
Chunhong Mao and
Daniel E. Murphy{-}Olson and
Marcus Nguyen and
Eric K. Nordberg and
Gary J. Olsen and
Robert Olson and
Jamie C. Overbeek and
Ross A. Overbeek and
Bruce D. Parrello and
Gordon D. Pusch and
Maulik Shukla and
Chris Thomas and
Margo VanOeffelen and
Veronika Vonstein and
Andrew S. Warren and
Fangfang Xia and
Dawen Xie and
Hyun Seung Yoo and
Rick Stevens},
title = {The {PATRIC} Bioinformatics Resource Center: expanding data and analysis
capabilities},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D606--D612},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz943},
doi = {10.1093/NAR/GKZ943},
timestamp = {Fri, 04 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/0002WABBBCCDDGG20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/IEEEpact/Stevens20,
author = {Rick Stevens},
editor = {Vivek Sarkar and
Hyesoon Kim},
title = {Overview of {HPC} and {AI} Computing for {COVID-19} in the {US}},
booktitle = {{PACT} '20: International Conference on Parallel Architectures and
Compilation Techniques, Virtual Event, GA, USA, October 3-7, 2020},
pages = {1},
publisher = {{ACM}},
year = {2020},
url = {https://doi.org/10.1145/3410463.3418602},
doi = {10.1145/3410463.3418602},
timestamp = {Fri, 23 Oct 2020 10:46:26 +0200},
biburl = {https://dblp.org/rec/conf/IEEEpact/Stevens20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/WozniakYMNCOBS20,
author = {Justin M. Wozniak and
Hyun Seung Yoo and
Jamaludin Mohd{-}Yusof and
Bogdan Nicolae and
Nicholson T. Collier and
Jonathan Ozik and
Thomas S. Brettin and
Rick Stevens},
title = {High-bypass Learning: Automated Detection of Tumor Cells That Significantly
Impact Drug Response},
booktitle = {6th {IEEE/ACM} Workshop on Machine Learning in High Performance Computing
Environments, and 1st Workshop on Artificial Intelligence and Machine
Learning for Scientific Applications {MLHPC/AI4S} 2020, Atlanta, GA,
USA, November 12, 2020},
pages = {40--49},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/MLHPCAI4S51975.2020.00012},
doi = {10.1109/MLHPCAI4S51975.2020.00012},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sc/WozniakYMNCOBS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2005-00095,
author = {Austin Clyde and
Tom Brettin and
Alexander Partin and
Maulik Shaulik and
Hyun Seung Yoo and
Yvonne A. Evrard and
Yitan Zhu and
Fangfang Xia and
Rick Stevens},
title = {A Systematic Approach to Featurization for Cancer Drug Sensitivity
Predictions with Deep Learning},
journal = {CoRR},
volume = {abs/2005.00095},
year = {2020},
url = {https://arxiv.org/abs/2005.00095},
eprinttype = {arXiv},
eprint = {2005.00095},
timestamp = {Fri, 08 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2005-00095.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2005-05431,
author = {Neil Getty and
Thomas S. Brettin and
Dong Jin and
Rick Stevens and
Fangfang Xia},
title = {Deep Medical Image Analysis with Representation Learning and Neuromorphic
Computing},
journal = {CoRR},
volume = {abs/2005.05431},
year = {2020},
url = {https://arxiv.org/abs/2005.05431},
eprinttype = {arXiv},
eprint = {2005.05431},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2005-05431.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2005-09572,
author = {Yitan Zhu and
Thomas S. Brettin and
Yvonne A. Evrard and
Alexander Partin and
Fangfang Xia and
Maulik Shukla and
Hyun Seung Yoo and
James H. Doroshow and
Rick Stevens},
title = {Ensemble Transfer Learning for the Prediction of Anti-Cancer Drug
Response},
journal = {CoRR},
volume = {abs/2005.09572},
year = {2020},
url = {https://arxiv.org/abs/2005.09572},
eprinttype = {arXiv},
eprint = {2005.09572},
timestamp = {Fri, 22 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2005-09572.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2006-01171,
author = {Austin Clyde and
Xiaotian Duan and
Rick Stevens},
title = {Regression Enrichment Surfaces: a Simple Analysis Technique for Virtual
Drug Screening Models},
journal = {CoRR},
volume = {abs/2006.01171},
year = {2020},
url = {https://arxiv.org/abs/2006.01171},
eprinttype = {arXiv},
eprint = {2006.01171},
timestamp = {Tue, 09 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2006-01171.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2006-02431,
author = {Yadu N. Babuji and
Ben Blaiszik and
Tom Brettin and
Kyle Chard and
Ryan Chard and
Austin Clyde and
Ian T. Foster and
Zhi Hong and
Shantenu Jha and
Zhuozhao Li and
Xuefeng Liu and
Arvind Ramanathan and
Yi Ren and
Nicholaus Saint and
Marcus Schwarting and
Rick Stevens and
Hubertus Van Dam and
Rick Wagner},
title = {Targeting SARS-CoV-2 with {AI-} and HPC-enabled Lead Generation: {A}
First Data Release},
journal = {CoRR},
volume = {abs/2006.02431},
year = {2020},
url = {https://arxiv.org/abs/2006.02431},
eprinttype = {arXiv},
eprint = {2006.02431},
timestamp = {Wed, 21 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2006-02431.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2010-06574,
author = {Aymen Al Saadi and
Dario Alf{\`{e}} and
Yadu N. Babuji and
Agastya Bhati and
Ben Blaiszik and
Thomas S. Brettin and
Kyle Chard and
Ryan Chard and
Peter V. Coveney and
Anda Trifan and
Alex Brace and
Austin Clyde and
Ian T. Foster and
Tom Gibbs and
Shantenu Jha and
Kristopher Keipert and
Thorsten Kurth and
Dieter Kranzlm{\"{u}}ller and
Hyungro Lee and
Zhuozhao Li and
Heng Ma and
Andr{\'{e}} Merzky and
Gerald Mathias and
Alexander Partin and
Junqi Yin and
Arvind Ramanathan and
Ashka Shah and
Abraham C. Stern and
Rick Stevens and
Li Tan and
Mikhail Titov and
Aristeidis Tsaris and
Matteo Turilli and
Huub J. J. Van Dam and
Shunzhou Wan and
David Wifling},
title = {{IMPECCABLE:} Integrated Modeling PipelinE for {COVID} Cure by Assessing
Better LEads},
journal = {CoRR},
volume = {abs/2010.06574},
year = {2020},
url = {https://arxiv.org/abs/2010.06574},
eprinttype = {arXiv},
eprint = {2010.06574},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2010-06574.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2010-10517,
author = {Hyungro Lee and
Andr{\'{e}} Merzky and
Li Tan and
Mikhail Titov and
Matteo Turilli and
Dario Alf{\`{e}} and
Agastya Bhati and
Alex Brace and
Austin Clyde and
Peter V. Coveney and
Heng Ma and
Arvind Ramanathan and
Rick Stevens and
Anda Trifan and
Hubertus Van Dam and
Shunzhou Wan and
Sean R. Wilkinson and
Shantenu Jha},
title = {Scalable {HPC} and {AI} Infrastructure for {COVID-19} Therapeutics},
journal = {CoRR},
volume = {abs/2010.10517},
year = {2020},
url = {https://arxiv.org/abs/2010.10517},
eprinttype = {arXiv},
eprint = {2010.10517},
timestamp = {Thu, 22 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2010-10517.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2011-12466,
author = {Alexander Partin and
Thomas S. Brettin and
Yvonne A. Evrard and
Yitan Zhu and
Hyun Seung Yoo and
Fangfang Xia and
Songhao Jiang and
Austin Clyde and
Maulik Shukla and
Michael Fonstein and
James H. Doroshow and
Rick Stevens},
title = {Learning Curves for Drug Response Prediction in Cancer Cell Lines},
journal = {CoRR},
volume = {abs/2011.12466},
year = {2020},
url = {https://arxiv.org/abs/2011.12466},
eprinttype = {arXiv},
eprint = {2011.12466},
timestamp = {Tue, 01 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2011-12466.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AntonopoulosAAB19,
author = {Dionysios A. Antonopoulos and
Rida Assaf and
Ramy Karam Aziz and
Thomas S. Brettin and
Christopher Bun and
Neal Conrad and
James J. Davis and
Emily M. Dietrich and
Terry Disz and
Svetlana Gerdes and
Ronald W. Kenyon and
Dustin Machi and
Chunhong Mao and
Daniel E. Murphy{-}Olson and
Eric K. Nordberg and
Gary J. Olsen and
Robert Olson and
Ross A. Overbeek and
Bruce D. Parrello and
Gordon D. Pusch and
John Santerre and
Maulik Shukla and
Rick L. Stevens and
Margo VanOeffelen and
Veronika Vonstein and
Andrew S. Warren and
Alice R. Wattam and
Fangfang Xia and
Hyun Seung Yoo},
title = {{PATRIC} as a unique resource for studying antimicrobial resistance},
journal = {Briefings Bioinform.},
volume = {20},
number = {4},
pages = {1094--1102},
year = {2019},
url = {https://doi.org/10.1093/bib/bbx083},
doi = {10.1093/BIB/BBX083},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/AntonopoulosAAB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icpp/WuTWSBX19,
author = {Xingfu Wu and
Valerie E. Taylor and
Justin M. Wozniak and
Rick Stevens and
Thomas S. Brettin and
Fangfang Xia},
title = {Performance, Energy, and Scalability Analysis and Improvement of Parallel
Cancer Deep Learning {CANDLE} Benchmarks},
booktitle = {Proceedings of the 48th International Conference on Parallel Processing,
{ICPP} 2019, Kyoto, Japan, August 05-08, 2019},
pages = {78:1--78:11},
publisher = {{ACM}},
year = {2019},
url = {https://doi.org/10.1145/3337821.3337905},
doi = {10.1145/3337821.3337905},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icpp/WuTWSBX19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/BalaprakashESWV19,
author = {Prasanna Balaprakash and
Romain Egele and
Misha Salim and
Stefan M. Wild and
Venkatram Vishwanath and
Fangfang Xia and
Tom Brettin and
Rick Stevens},
editor = {Michela Taufer and
Pavan Balaji and
Antonio J. Pe{\~{n}}a},
title = {Scalable reinforcement-learning-based neural architecture search for
cancer deep learning research},
booktitle = {Proceedings of the International Conference for High Performance Computing,
Networking, Storage and Analysis, {SC} 2019, Denver, Colorado, USA,
November 17-19, 2019},
pages = {37:1--37:33},
publisher = {{ACM}},
year = {2019},
url = {https://doi.org/10.1145/3295500.3356202},
doi = {10.1145/3295500.3356202},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sc/BalaprakashESWV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1909-00311,
author = {Prasanna Balaprakash and
Romain Egele and
Misha Salim and
Stefan M. Wild and
Venkatram Vishwanath and
Fangfang Xia and
Tom Brettin and
Rick Stevens},
title = {Scalable Reinforcement-Learning-Based Neural Architecture Search for
Cancer Deep Learning Research},
journal = {CoRR},
volume = {abs/1909.00311},
year = {2019},
url = {http://arxiv.org/abs/1909.00311},
eprinttype = {arXiv},
eprint = {1909.00311},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1909-00311.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WozniakJBOCBXBS18,
author = {Justin M. Wozniak and
Rajeev Jain and
Prasanna Balaprakash and
Jonathan Ozik and
Nicholson T. Collier and
John Bauer and
Fangfang Xia and
Thomas S. Brettin and
Rick Stevens and
Jamaludin Mohd{-}Yusof and
Cristina Garcia{-}Cardona and
Brian Van Essen and
Matthew Baughman},
title = {CANDLE/Supervisor: a workflow framework for machine learning applied
to cancer research},
journal = {{BMC} Bioinform.},
volume = {19-S},
number = {18},
pages = {59--69},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2508-4},
doi = {10.1186/S12859-018-2508-4},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WozniakJBOCBXBS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XiaSBGCAMHDESS18,
author = {Fangfang Xia and
Maulik Shukla and
Thomas S. Brettin and
Cristina Garcia{-}Cardona and
Judith D. Cohn and
Jonathan E. Allen and
Sergei Maslov and
Susan L. Holbeck and
James H. Doroshow and
Yvonne A. Evrard and
Eric A. Stahlberg and
Rick L. Stevens},
title = {Predicting tumor cell line response to drug pairs with deep learning},
journal = {{BMC} Bioinform.},
volume = {19-S},
number = {18},
pages = {71--79},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2509-3},
doi = {10.1186/S12859-018-2509-3},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/XiaSBGCAMHDESS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijhpca/AschMBBBBBCCSDD18,
author = {Mark Asch and
Terry Moore and
Rosa M. Badia and
Micah Beck and
Peter H. Beckman and
T. Bidot and
Fran{\c{c}}ois Bodin and
Franck Cappello and
Alok N. Choudhary and
Bronis R. de Supinski and
Ewa Deelman and
Jack J. Dongarra and
Anshu Dubey and
Geoffrey C. Fox and
H. Fu and
Sergi Girona and
William Gropp and
Michael A. Heroux and
Yutaka Ishikawa and
Katarzyna Keahey and
David E. Keyes and
Bill Kramer and
J.{-}F. Lavignon and
Y. Lu and
Satoshi Matsuoka and
Bernd Mohr and
Daniel A. Reed and
S. Requena and
Joel H. Saltz and
Thomas C. Schulthess and
Rick L. Stevens and
D. Martin Swany and
Alexander S. Szalay and
William M. Tang and
G. Varoquaux and
Jean{-}Pierre Vilotte and
Robert W. Wisniewski and
Z. Xu and
Igor Zacharov},
title = {Big data and extreme-scale computing},
journal = {Int. J. High Perform. Comput. Appl.},
volume = {32},
number = {4},
pages = {435--479},
year = {2018},
url = {https://doi.org/10.1177/1094342018778123},
doi = {10.1177/1094342018778123},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijhpca/AschMBBBBBCCSDD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/ZakiWOCBS18,
author = {George F. Zaki and
Justin M. Wozniak and
Jonathan Ozik and
Nicholson T. Collier and
Thomas S. Brettin and
Rick Stevens},
title = {Portable and Reusable Deep Learning Infrastructure with Containers
to Accelerate Cancer Studies},
booktitle = {Proceedings of the 4th International Workshop on Extreme Scale Programming
Models and Middleware, ESPM2@SC 2018, Dallas, Texas, November 11-16,
2018},
pages = {54--61},
publisher = {{IEEE}},
year = {2018},
url = {https://doi.org/10.1109/ESPM2.2018.00011},
doi = {10.1109/ESPM2.2018.00011},
timestamp = {Fri, 26 Jul 2019 14:45:32 +0200},
biburl = {https://dblp.org/rec/conf/sc/ZakiWOCBS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1804-11002,
author = {Edmon Begoli and
Jim Brase and
Bambi DeLaRosa and
Penelope Jones and
Dimitri Kusnezov and
Jason Paragas and
Rick Stevens and
Frederick H. Streitz and
Georgia D. Tourassi},
title = {Precision Medicine as an Accelerator for Next Generation Cognitive
Supercomputing},
journal = {CoRR},
volume = {abs/1804.11002},
year = {2018},
url = {http://arxiv.org/abs/1804.11002},
eprinttype = {arXiv},
eprint = {1804.11002},
timestamp = {Sat, 20 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1804-11002.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WattamDABBBCDDG17,
author = {Alice R. Wattam and
James J. Davis and
Rida Assaf and
S{\'{e}}bastien Boisvert and
Thomas S. Brettin and
Christopher Bun and
Neal Conrad and
Emily M. Dietrich and
Terry Disz and
Joseph L. Gabbard and
Svetlana Gerdes and
Christopher S. Henry and
Ronald W. Kenyon and
Dustin Machi and
Chunhong Mao and
Eric K. Nordberg and
Gary J. Olsen and
Daniel E. Murphy{-}Olson and
Robert Olson and
Ross A. Overbeek and
Bruce D. Parrello and
Gordon D. Pusch and
Maulik Shukla and
Veronika Vonstein and
Andrew S. Warren and
Fangfang Xia and
Hyun Seung Yoo and
Rick L. Stevens},
title = {Improvements to PATRIC, the all-bacterial Bioinformatics Database
and Analysis Resource Center},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D535--D542},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1017},
doi = {10.1093/NAR/GKW1017},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WattamDABBBCDDG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/Stevens17,
author = {Rick Stevens},
editor = {H. Howie Huang and
Jon B. Weissman and
Adriana Iamnitchi and
Alexandru Iosup},
title = {Deep Learning in Cancer and Infectious Disease: Novel Driver Problems
for Future {HPC} Architecture},
booktitle = {Proceedings of the 26th International Symposium on High-Performance
Parallel and Distributed Computing, {HPDC} 2017, Washington, DC, USA,
June 26-30, 2017},
pages = {65},
publisher = {{ACM}},
year = {2017},
url = {https://doi.org/10.1145/3078597.3091526},
doi = {10.1145/3078597.3091526},
timestamp = {Tue, 06 Nov 2018 11:07:20 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/Stevens17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/OverbeekOPODDEGPSVWXS14,
author = {Ross A. Overbeek and
Robert Olson and
Gordon D. Pusch and
Gary J. Olsen and
James J. Davis and
Terry Disz and
Robert A. Edwards and
Svetlana Gerdes and
Bruce D. Parrello and
Maulik Shukla and
Veronika Vonstein and
Alice R. Wattam and
Fangfang Xia and
Rick Stevens},
title = {The {SEED} and the Rapid Annotation of microbial genomes using Subsystems
Technology {(RAST)}},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {206--214},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1226},
doi = {10.1093/NAR/GKT1226},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/OverbeekOPODDEGPSVWXS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WattamADDDGGGHKMMNOOPSSSSVWWWYZZS14,
author = {Alice R. Wattam and
David Abraham and
Oral Dalay and
Terry Disz and
Timothy Driscoll and
Joseph L. Gabbard and
Joseph J. Gillespie and
Roger Gough and
Deborah Hix and
Ronald W. Kenyon and
Dustin Machi and
Chunhong Mao and
Eric K. Nordberg and
Robert Olson and
Ross A. Overbeek and
Gordon D. Pusch and
Maulik Shukla and
Julie Schulman and
Rick L. Stevens and
Daniel E. Sullivan and
Veronika Vonstein and
Andrew S. Warren and
Rebecca Will and
Meredith J. C. Wilson and
Hyun Seung Yoo and
Chengdong Zhang and
Yan Zhang and
Bruno W. S. Sobral},
title = {PATRIC, the bacterial bioinformatics database and analysis resource},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {581--591},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1099},
doi = {10.1093/NAR/GKT1099},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WattamADDDGGGHKMMNOOPSSSSVWWWYZZS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eit/El-BathyGAESS14,
author = {Naser El{-}Bathy and
Clay S. Gloster Jr. and
Ghassan Azar and
Mohammed El{-}Bathy and
Gordon Stein and
Ricky Stevenson},
title = {Intelligent surveillance lifecycle architecture for epidemiological
data clustering using Twitter and novel genetic algorithm},
booktitle = {{IEEE} International Conference on Electro/Information Technology,
{EIT} 2014, Milwaukee, WI, USA, June 5-7, 2014},
pages = {149--155},
publisher = {{IEEE}},
year = {2014},
url = {https://doi.org/10.1109/EIT.2014.6871753},
doi = {10.1109/EIT.2014.6871753},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/eit/El-BathyGAESS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmmm/PesceLHVSWD13,
author = {Lorenzo L. Pesce and
Hyong Chol Lee and
Mark Hereld and
Sid Visser and
Rick L. Stevens and
Albert Wildeman and
Wim van Drongelen},
title = {Large-Scale Modeling of Epileptic Seizures: Scaling Properties of
Two Parallel Neuronal Network Simulation Algorithms},
journal = {Comput. Math. Methods Medicine},
volume = {2013},
pages = {182145:1--182145:10},
year = {2013},
url = {https://doi.org/10.1155/2013/182145},
doi = {10.1155/2013/182145},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cmmm/PesceLHVSWD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EdwardsODPVSO12,
author = {Robert A. Edwards and
Robert Olson and
Terry Disz and
Gordon D. Pusch and
Veronika Vonstein and
Rick Stevens and
Ross A. Overbeek},
title = {Real Time Metagenomics: Using \emph{k}-mers to annotate metagenomes},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3316--3317},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts599},
doi = {10.1093/BIOINFORMATICS/BTS599},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EdwardsODPVSO12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eit/El-BathyGAESS12,
author = {Naser El{-}Bathy and
Clay Gloster and
Ghassan Azar and
Mohammed El{-}Bathy and
Gordon Stein and
Ricky Stevenson},
title = {Intelligent teaching models for {STEM} related careers using a service-oriented
architecture and management science},
booktitle = {2012 {IEEE} International Conference on Electro/Information Technology,
Indianapolis, IN, USA, May 6-8, 2012},
pages = {1--7},
publisher = {{IEEE}},
year = {2012},
url = {https://doi.org/10.1109/EIT.2012.6220720},
doi = {10.1109/EIT.2012.6220720},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/eit/El-BathyGAESS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijhpca/DongarraBM11,
author = {Jack J. Dongarra and
Peter H. Beckman and
Terry Moore and
Patrick Aerts and
Giovanni Aloisio and
Jean{-}Claude Andre and
David Barkai and
Jean{-}Yves Berthou and
Taisuke Boku and
Bertrand Braunschweig and
Franck Cappello and
Barbara M. Chapman and
Xuebin Chi and
Alok N. Choudhary and
Sudip S. Dosanjh and
Thom H. Dunning and
Sandro Fiore and
Al Geist and
Bill Gropp and
Robert J. Harrison and
Mark Hereld and
Michael A. Heroux and
Adolfy Hoisie and
Koh Hotta and
Zhong Jin and
Yutaka Ishikawa and
Fred Johnson and
Sanjay Kale and
Richard Kenway and
David E. Keyes and
Bill Kramer and
Jes{\'{u}}s Labarta and
Alain Lichnewsky and
Thomas Lippert and
Bob Lucas and
Barney Maccabe and
Satoshi Matsuoka and
Paul Messina and
Peter Michielse and
Bernd Mohr and
Matthias S. M{\"{u}}ller and
Wolfgang E. Nagel and
Hiroshi Nakashima and
Michael E. Papka and
Daniel A. Reed and
Mitsuhisa Sato and
Edward Seidel and
John Shalf and
David Skinner and
Marc Snir and
Thomas L. Sterling and
Rick Stevens and
Frederick H. Streitz and
Bob Sugar and
Shinji Sumimoto and
William M. Tang and
John A. Taylor and
Rajeev Thakur and
Anne E. Trefethen and
Mateo Valero and
Aad J. van der Steen and
Jeffrey S. Vetter and
Peg Williams and
Robert W. Wisniewski and
Katherine A. Yelick},
title = {The International Exascale Software Project roadmap},
journal = {Int. J. High Perform. Comput. Appl.},
volume = {25},
number = {1},
pages = {3--60},
year = {2011},
url = {https://doi.org/10.1177/1094342010391989},
doi = {10.1177/1094342010391989},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijhpca/DongarraBM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ieeehpcs/Stevens11,
author = {Rick L. Stevens},
editor = {Waleed W. Smari and
John P. McIntire},
title = {{HPCS} 2011 keynotes: Tuesday keynote {I:} High-performance computing
and biology: The quest for a predictive biological theory},
booktitle = {2011 International Conference on High Performance Computing {\&}
Simulation, {HPCS} 2012, Istanbul, Turkey, July 4-8, 2011},
publisher = {{IEEE}},
year = {2011},
url = {https://doi.org/10.1109/HPCSim.2011.5999793},
doi = {10.1109/HPCSIM.2011.5999793},
timestamp = {Tue, 28 Jul 2020 13:09:02 +0200},
biburl = {https://dblp.org/rec/conf/ieeehpcs/Stevens11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DiszACOOVSE10,
author = {Terry Disz and
Sajia Akhter and
Daniel Cuevas and
Robert Olson and
Ross A. Overbeek and
Veronika Vonstein and
Rick Stevens and
Robert A. Edwards},
title = {Accessing the {SEED} genome databases via Web services {API:} tools
for programmers},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {319},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-319},
doi = {10.1186/1471-2105-11-319},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DiszACOOVSE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijon/DwyerLMSHD10,
author = {Jennifer Dwyer and
Hyong Lee and
Amber Martell and
Rick L. Stevens and
Mark Hereld and
Wim van Drongelen},
title = {Oscillation in a network model of neocortex},
journal = {Neurocomputing},
volume = {73},
number = {7-9},
pages = {1051--1056},
year = {2010},
url = {https://doi.org/10.1016/j.neucom.2009.12.021},
doi = {10.1016/J.NEUCOM.2009.12.021},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijon/DwyerLMSHD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/McDermottBSSRSTJ10,
author = {Jason E. McDermott and
Bob Baddeley and
Susan L. Stevens and
Antonio Sanfilippo and
Rick Riensche and
Mary P. Stenzel{-}Poore and
Ronald C. Taylor and
Russ Jensen},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {An integrated approach to predictive genomic analytics},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {390--393},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854837},
doi = {10.1145/1854776.1854837},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/McDermottBSSRSTJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isami/FariaRSH10,
author = {Jos{\'{e}} P. Faria and
Miguel Rocha and
Rick L. Stevens and
Christopher S. Henry},
editor = {Miguel P. Rocha and
Florentino Fern{\'{a}}ndez Riverola and
Hagit Shatkay and
Juan M. Corchado},
title = {Analysis of the Effect of Reversibility Constraints on the Predictions
of Genome-Scale Metabolic Models},
booktitle = {Advances in Bioinformatics - 4th International Workshop on Practical
Applications of Computational Biology and Bioinformatics 2010 {(IWPACBB}
2010), Guimar{\~{a}}es, Portugal, 16-18 June 2010},
series = {Advances in Intelligent and Soft Computing},
volume = {74},
pages = {209--215},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-13214-8\_27},
doi = {10.1007/978-3-642-13214-8\_27},
timestamp = {Wed, 12 Oct 2022 08:58:53 +0200},
biburl = {https://dblp.org/rec/conf/isami/FariaRSH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijhpca/DongarraBACLMMMSTV09,
author = {Jack J. Dongarra and
Peter H. Beckman and
Patrick Aerts and
Franck Cappello and
Thomas Lippert and
Satoshi Matsuoka and
Paul Messina and
Terry Moore and
Rick Stevens and
Anne E. Trefethen and
Mateo Valero},
title = {The International Exascale Software Project: a Call To Cooperative
Action By the Global High-Performance Community},
journal = {Int. J. High Perform. Comput. Appl.},
volume = {23},
number = {4},
pages = {309--322},
year = {2009},
url = {https://doi.org/10.1177/1094342009347714},
doi = {10.1177/1094342009347714},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijhpca/DongarraBACLMMMSTV09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/AnglyWPESVABCDDFHHHKMMMMMNRSWZZR09,
author = {Florent E. Angly and
Dana Willner and
Alejandra Prieto{-}Dav{\'{o}} and
Robert A. Edwards and
Robert Schmieder and
Rebecca Vega{-}Thurber and
Dionysios A. Antonopoulos and
Katie Barott and
Matthew T. Cottrell and
Christelle Desnues and
Elizabeth A. Dinsdale and
Mike Furlan and
Matthew Haynes and
Matthew R. Henn and
Yongfei Hu and
David L. Kirchman and
Tracey McDole and
John D. McPherson and
Folker Meyer and
R. Michael Miller and
Egbert Mundt and
Robert K. Naviaux and
Beltran Rodriguez{-}Mueller and
Rick Stevens and
Linda Wegley and
Lixin Zhang and
Baoli Zhu and
Forest Rohwer},
title = {The {GAAS} Metagenomic Tool and Its Estimations of Viral and Microbial
Average Genome Size in Four Major Biomes},
journal = {PLoS Comput. Biol.},
volume = {5},
number = {12},
year = {2009},
url = {https://doi.org/10.1371/journal.pcbi.1000593},
doi = {10.1371/JOURNAL.PCBI.1000593},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/AnglyWPESVABCDDFHHHKMMMMMNRSWZZR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bicob/ShiS09,
author = {Xinghua Shi and
Rick L. Stevens},
editor = {Sanguthevar Rajasekaran},
title = {A Bayesian Approach to High-Throughput Biological Model Generation},
booktitle = {Bioinformatics and Computational Biology, First International Conference,
BICoB 2009, New Orleans, LA, USA, April 8-10, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5462},
pages = {376--387},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-00727-9\_35},
doi = {10.1007/978-3-642-00727-9\_35},
timestamp = {Tue, 14 May 2019 10:00:55 +0200},
biburl = {https://dblp.org/rec/conf/bicob/ShiS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/XiaS09,
author = {Fangfang Xia and
Rick Stevens},
editor = {Hamid R. Arabnia and
Mary Qu Yang},
title = {Inferring a Species Tree from Gene Trees in the Presence of {HGT}},
booktitle = {International Conference on Bioinformatics {\&} Computational
Biology, {BIOCOMP} 2009, July 13-16, 2009, Las Vegas Nevada, USA,
2 Volumes},
pages = {840--847},
publisher = {{CSREA} Press},
year = {2009},
timestamp = {Wed, 28 Oct 2009 10:44:56 +0100},
biburl = {https://dblp.org/rec/conf/biocomp/XiaS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/esann/DrongelenLMDSH09,
author = {Wim van Drongelen and
Hyong Lee and
Amber Martell and
Jennifer Dwyer and
Rick Stevens and
Mark Hereld},
title = {Oscillation in a network model of neocortex},
booktitle = {17th European Symposium on Artificial Neural Networks, {ESANN} 2009,
Bruges, Belgium, April 22-24, 2009, Proceedings},
year = {2009},
url = {https://www.esann.org/sites/default/files/proceedings/legacy/es2009-64.pdf},
timestamp = {Tue, 02 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/esann/DrongelenLMDSH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MeyerPDOGKPRSWWE08,
author = {Folker Meyer and
Daniel Paarmann and
Mark D'Souza and
Robert Olson and
Elizabeth M. Glass and
Michael Kubal and
Tobias Paczian and
Alexis A. Rodriguez and
Rick Stevens and
Andreas Wilke and
Jared Wilkening and
Robert A. Edwards},
title = {The metagenomics {RAST} server - a public resource for the automatic
phylogenetic and functional analysis of metagenomes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-386},
doi = {10.1186/1471-2105-9-386},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MeyerPDOGKPRSWWE08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clade/ShiS08,
author = {Xinghua Shi and
Rick Stevens},
editor = {Yoonhee Kim and
Xiaolin Li},
title = {{SWARM:} a scientific workflow for supporting bayesian approaches
to improve metabolic models},
booktitle = {6th International Workshop on Challenges of Large Applications in
Distributed Environments, CLADE@HPDC 2008, Boston, MA, USA, June 23,
2008},
pages = {25--34},
publisher = {{ACM}},
year = {2008},
url = {https://doi.org/10.1145/1383529.1383535},
doi = {10.1145/1383529.1383535},
timestamp = {Tue, 06 Nov 2018 16:58:12 +0100},
biburl = {https://dblp.org/rec/conf/clade/ShiS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mmvr/SilversteinWDOP08,
author = {Jonathan C. Silverstein and
Colin Walsh and
Fred Dech and
Eric C. Olson and
Michael E. Papka and
Nigel M. Parsad and
Rick Stevens},
editor = {James D. Westwood and
Randy S. Haluck and
Helene M. Hoffman and
Greg T. Mogel and
Roger Phillips and
Richard A. Robb and
Kirby G. Vosburgh},
title = {Multi-Parallel Open Technology to Enable Collaborative Volume Visualization:
How to Create Global Immersive Virtual Anatomy Classrooms},
booktitle = {Medicine Meets Virtual Reality 16 - parallel, combinatorial, convergent:
NextMed by Design, {MMVR} 2008, Long Beach, CA, USA, January 29, 2008},
series = {Studies in Health Technology and Informatics},
volume = {132},
pages = {463--468},
publisher = {{IOS} Press},
year = {2008},
timestamp = {Tue, 09 Jan 2018 17:48:16 +0100},
biburl = {https://dblp.org/rec/conf/mmvr/SilversteinWDOP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/McNeilRABCDEGHKMMMOOOPPPPRSVVZXZOS07,
author = {Leslie Klis McNeil and
Claudia Reich and
Ramy K. Aziz and
Daniela Bartels and
Matthew Cohoon and
Terry Disz and
Robert A. Edwards and
Svetlana Gerdes and
Kaitlyn Hwang and
Michael Kubal and
Gohar Rem Margaryan and
Folker Meyer and
William Mihalo and
Gary J. Olsen and
Robert Olson and
Andrei Osterman and
Daniel Paarmann and
Tobias Paczian and
Bruce D. Parrello and
Gordon D. Pusch and
Dmitry A. Rodionov and
Xinghua Shi and
Olga Vassieva and
Veronika Vonstein and
Olga Zagnitko and
Fangfang Xia and
Jenifer Zinner and
Ross A. Overbeek and
Rick Stevens},
title = {The National Microbial Pathogen Database Resource {(NMPDR):} a genomics
platform based on subsystem annotation},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {347--353},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl947},
doi = {10.1093/NAR/GKL947},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/McNeilRABCDEGHKMMMOOOPPPPRSVVZXZOS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/GaoSSHZ07,
author = {Guang R. Gao and
Thomas L. Sterling and
Rick Stevens and
Mark Hereld and
Weirong Zhu},
title = {ParalleX: {A} Study of {A} New Parallel Computation Model},
booktitle = {21th International Parallel and Distributed Processing Symposium {(IPDPS}
2007), Proceedings, 26-30 March 2007, Long Beach, California, {USA}},
pages = {1--6},
publisher = {{IEEE}},
year = {2007},
url = {https://doi.org/10.1109/IPDPS.2007.370484},
doi = {10.1109/IPDPS.2007.370484},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/GaoSSHZ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mmvr/SilversteinWDOP07,
author = {Jonathan C. Silverstein and
Colin Walsh and
Fred Dech and
Eric C. Olson and
Michael E. Papka and
Nigel M. Parsad and
Rick L. Stevens},
editor = {James D. Westwood and
Randy S. Haluck and
Helene M. Hoffman and
Greg T. Mogel and
Roger Phillips and
Richard A. Robb and
Kirby G. Vosburgh},
title = {Immersive Virtual Anatomy Course using a Cluster of Volume Visualization
Machines and Passive Stereo},
booktitle = {Medicine Meets Virtual Reality 15 - in vivo, in vitro, in silico:
Designing the Next in Medicine},
series = {Studies in Health Technology and Informatics},
volume = {125},
pages = {439--444},
publisher = {{IOS} Press},
year = {2007},
url = {http://ebooks.iospress.nl/volumearticle/10799},
timestamp = {Fri, 28 Jul 2017 07:45:45 +0200},
biburl = {https://dblp.org/rec/conf/mmvr/SilversteinWDOP07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/vr/LokFRJDCSL06,
author = {Benjamin Lok and
Richard E. Ferdig and
Andrew Raij and
Kyle Johnsen and
Robert F. Dickerson and
Jade Coutts and
Amy O. Stevens and
D. Scott Lind},
title = {Applying virtual reality in medical communication education: current
findings and potential teaching and learning benefits of immersive
virtual patients},
journal = {Virtual Real.},
volume = {10},
number = {3-4},
pages = {185--195},
year = {2006},
url = {https://doi.org/10.1007/s10055-006-0037-3},
doi = {10.1007/S10055-006-0037-3},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/vr/LokFRJDCSL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpc/CatlettAA06,
author = {Charlie Catlett and
William E. Allcock and
Phil Andrews and
Ruth A. Aydt and
Ray Bair and
Natasha Balac and
Bryan Banister and
Trish Barker and
Mark Bartelt and
Peter H. Beckman and
Francine Berman and
Gary R. Bertoline and
Alan Blatecky and
Jay Boisseau and
Jim Bottum and
Sharon Brunett and
Julian J. Bunn and
Michelle Butler and
David Carver and
John Cobb and
Tim Cockerill and
Peter Couvares and
Maytal Dahan and
Diana Diehl and
Thom H. Dunning and
Ian T. Foster and
Kelly P. Gaither and
Dennis Gannon and
Sebastien Goasguen and
Michael Grobe and
David L. Hart and
Matt Heinzel and
Chris Hempel and
Wendy Huntoon and
Joseph A. Insley and
Christopher T. Jordan and
Ivan R. Judson and
Anke Kamrath and
Nicholas T. Karonis and
Carl Kesselman and
Patricia A. Kovatch and
Lex Lane and
Scott A. Lathrop and
Michael J. Levine and
David Lifka and
Lee Liming and
Miron Livny and
Rich Loft and
Doru Marcusiu and
Jim Marsteller and
Stuart Martin and
D. Scott McCaulay and
John McGee and
Laura McGinnis and
Michael A. McRobbie and
Paul Messina and
Reagan W. Moore and
Richard Lee Moore and
John{-}Paul Navarro and
Jeff Nichols and
Michael E. Papka and
Rob Pennington and
Greg Pike and
Jim Pool and
Raghurama Reddy and
Daniel A. Reed and
Tony Rimovsky and
Eric Roberts and
Ralph Roskies and
Sergiu Sanielevici and
J. Ray Scott and
Anurag Shankar and
Mark Sheddon and
Mike Showerman and
Derek Simmel and
Abe Singer and
Dane Skow and
Shava Smallen and
Warren Smith and
Carol X. Song and
Rick L. Stevens and
Craig A. Stewart and
Robert B. Stock and
Nathan Stone and
John Towns and
Tomislav Urban and
Mike Vildibill and
Edward Walker and
Von Welch and
Nancy Wilkins{-}Diehr and
Roy Williams and
Linda Winkler and
Lan Zhao and
Ann Zimmerman},
editor = {Lucio Grandinetti},
title = {TeraGrid: Analysis of Organization, System Architecture, and Middleware
Enabling New Types of Applications},
booktitle = {High Performance Computing and Grids in Action - Selected Papers from
the 2006 International Advanced Research Workshop on High Performance
Computing and Grids, Cetraro, Italy, 2006},
series = {Advances in Parallel Computing},
volume = {16},
pages = {225--249},
publisher = {{IOS} Press},
year = {2006},
timestamp = {Tue, 24 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/hpc/CatlettAA06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icc/GaoPS06,
author = {Han Gao and
Michael E. Papka and
Rick L. Stevens},
title = {Extending Multicast Communications by Hybrid Overlay Network},
booktitle = {Proceedings of {IEEE} International Conference on Communications,
{ICC} 2006, Istanbul, Turkey, 11-15 June 2006},
pages = {820--828},
publisher = {{IEEE}},
year = {2006},
url = {https://doi.org/10.1109/ICC.2006.254809},
doi = {10.1109/ICC.2006.254809},
timestamp = {Wed, 16 Oct 2019 14:14:50 +0200},
biburl = {https://dblp.org/rec/conf/icc/GaoPS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/GaoSSHZ06,
author = {Guang R. Gao and
Thomas L. Sterling and
Rick L. Stevens and
Mark Hereld and
Weirong Zhu},
title = {Hierarchical multithreading: programming model and system software},
booktitle = {20th International Parallel and Distributed Processing Symposium {(IPDPS}
2006), Proceedings, 25-29 April 2006, Rhodes Island, Greece},
publisher = {{IEEE}},
year = {2006},
url = {https://doi.org/10.1109/IPDPS.2006.1639574},
doi = {10.1109/IPDPS.2006.1639574},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/GaoSSHZ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vr/HereldPBS06,
author = {Mark Hereld and
Michael E. Papka and
Justin Binns and
Rick L. Stevens},
title = {CupHolder: {A} Multi-Person Interactive High-Resolution Workstation},
booktitle = {{IEEE} Virtual Reality Conference, {VR} 2006, Alexandria, Virginia,
USA, March 25-29, 2006},
pages = {323},
publisher = {{IEEE} Computer Society},
year = {2006},
url = {https://doi.org/10.1109/VR.2006.42},
doi = {10.1109/VR.2006.42},
timestamp = {Wed, 16 Oct 2019 14:14:53 +0200},
biburl = {https://dblp.org/rec/conf/vr/HereldPBS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/siam/06/TerescoFBFLPTVWSKFGDM06,
author = {James D. Teresco and
Joseph E. Flaherty and
Scott B. Baden and
Jamal Faik and
S{\'{e}}bastien Lacour and
Manish Parashar and
Valerie E. Taylor and
Carlos A. Varela and
Xingfu Wu and
Rick Stevens and
Nicholas T. Karonis and
Ian T. Foster and
Luis G. Gervasio and
Travis Desell and
Kaoutar El Maghraoui},
editor = {Michael A. Heroux and
Padma Raghavan and
Horst D. Simon},
title = {Approaches to Architecture-Aware Parallel Scientific Computation},
booktitle = {Parallel Processing for Scientific Computing},
series = {Software, Environments, Tools},
volume = {20},
pages = {33--58},
publisher = {{SIAM}},
year = {2006},
url = {https://doi.org/10.1137/1.9780898718133.ch3},
doi = {10.1137/1.9780898718133.CH3},
timestamp = {Mon, 16 Sep 2019 14:43:13 +0200},
biburl = {https://dblp.org/rec/books/siam/06/TerescoFBFLPTVWSKFGDM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tog/MajumderS05,
author = {Aditi Majumder and
Rick Stevens},
title = {Perceptual photometric seamlessness in projection-based tiled displays},
journal = {{ACM} Trans. Graph.},
volume = {24},
number = {1},
pages = {118--139},
year = {2005},
url = {https://doi.org/10.1145/1037957.1037964},
doi = {10.1145/1037957.1037964},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tog/MajumderS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clade/DiszKOOS05,
author = {Terry Disz and
Michael Kubal and
Robert Olson and
Ross A. Overbeek and
Rick L. Stevens},
title = {Challenges in large scale distributed computing: bioinformatics},
booktitle = {2005 Challenges of Large Applications in Distributed Environments,
CLADE@HPDC 2005, Research Triangle Park, NC, USA, July 24, 2005},
pages = {57--65},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/CLADE.2005.1520902},
doi = {10.1109/CLADE.2005.1520902},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/clade/DiszKOOS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cluster/GaoJULDPS05,
author = {Han Gao and
Ivan R. Judson and
Thomas D. Uram and
S. Lefvert and
Terry Disz and
Michael E. Papka and
Rick L. Stevens},
title = {An Infrastructure of Network Services for Seamless Integration in
Advanced Collaborative Computing Environments},
booktitle = {2005 {IEEE} International Conference on Cluster Computing {(CLUSTER}
2005), September 26 - 30, 2005, Boston, Massachusetts, {USA}},
pages = {1--10},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/CLUSTR.2005.347072},
doi = {10.1109/CLUSTR.2005.347072},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cluster/GaoJULDPS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/HereldS05,
author = {Mark Hereld and
Rick L. Stevens},
title = {Pixel-Aligned Warping for Multiprojector Tiled Displays},
booktitle = {{IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR}
Workshops 2005, San Diego, CA, USA, 21-23 September, 2005},
pages = {104},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/CVPR.2005.509},
doi = {10.1109/CVPR.2005.509},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cvpr/HereldS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/healthgrid/BinnsDMPSS05,
author = {Justin Binns and
Fred Dech and
Matthew McCrory and
Michael E. Papka and
Jonathan C. Silverstein and
Rick L. Stevens},
editor = {Tony Solomonides and
Richard McClatchey and
Vincent Breton and
Yannick Legr{\'{e}} and
Sofie N{\o}rager},
title = {Developing a Distributed Collaborative Radiological Visualization
Application},
booktitle = {From Grid to Healthgrid - Proceedings of Healthgrid 2005, Oxford,
UK, 7-9 April 2005},
series = {Studies in Health Technology and Informatics},
volume = {112},
pages = {70--79},
publisher = {{IOS} Press},
year = {2005},
url = {http://www.booksonline.iospress.nl/Content/View.aspx?piid=4232},
timestamp = {Mon, 13 Oct 2014 14:37:15 +0200},
biburl = {https://dblp.org/rec/conf/healthgrid/BinnsDMPSS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ism/GaoPS05,
author = {Han Gao and
Michael E. Papka and
Rick L. Stevens},
title = {Performance Metrics of {IP} Multicast Sessions},
booktitle = {Seventh {IEEE} International Symposium on Multimedia {(ISM} 2005),
12-14 December 2005, Irvine, CA, {USA}},
pages = {183--192},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/ISM.2005.90},
doi = {10.1109/ISM.2005.90},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ism/GaoPS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/GrossmanSAEWZCVDNRALPS05,
author = {Robert L. Grossman and
Michal Sabala and
Anushka Anand and
Steve Eick and
Leland Wilkinson and
Pei Zhang and
John Chaves and
Steve Vejcik and
John F. Dillenburg and
Peter C. Nelson and
Doug Rorem and
Javid Alimohideen and
Jason Leigh and
Michael E. Papka and
Rick L. Stevens},
title = {Real Time Change Detection and Alerts from Highway Traffic Data},
booktitle = {Proceedings of the {ACM/IEEE} {SC2005} Conference on High Performance
Networking and Computing, November 12-18, 2005, Seattle, WA, USA,
CD-Rom},
pages = {69},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/SC.2005.60},
doi = {10.1109/SC.2005.60},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/GrossmanSAEWZCVDNRALPS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cacm/OverbeekDS04,
author = {Ross A. Overbeek and
Terry Disz and
Rick L. Stevens},
title = {The {SEED:} a peer-to-peer environment for genome annotation},
journal = {Commun. {ACM}},
volume = {47},
number = {11},
pages = {46--51},
year = {2004},
url = {https://doi.org/10.1145/1029496.1029525},
doi = {10.1145/1029496.1029525},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cacm/OverbeekDS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijon/DrongelenLHJCEPS04,
author = {Wim van Drongelen and
Hyong Chol Lee and
Mark Hereld and
David Jones and
Matthew Cohoon and
Frank Elsen and
Michael E. Papka and
Rick L. Stevens},
title = {Simulation of neocortical epileptiform activity using parallel computing},
journal = {Neurocomputing},
volume = {58-60},
pages = {1203--1209},
year = {2004},
url = {https://doi.org/10.1016/j.neucom.2004.01.186},
doi = {10.1016/J.NEUCOM.2004.01.186},
timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijon/DrongelenLHJCEPS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ngc/ArzbergerFKASS04,
author = {Peter W. Arzberger and
Abbas Farazdel and
Akihiko Konagaya and
Larry Ang and
Shinji Shimojo and
Rick L. Stevens},
title = {Life Sciences and Cyberinfrastructure: Dual and Interacting Revolutions
that will Drive Future Science},
journal = {New Gener. Comput.},
volume = {22},
number = {2},
pages = {97--110},
year = {2004},
url = {https://doi.org/10.1007/BF03040949},
doi = {10.1007/BF03040949},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ngc/ArzbergerFKASS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tvcg/MajumderS04,
author = {Aditi Majumder and
Rick Stevens},
title = {Color Nonuniformity in Projection-Based Displays: Analysis and Solutions},
journal = {{IEEE} Trans. Vis. Comput. Graph.},
volume = {10},
number = {2},
pages = {177--188},
year = {2004},
url = {https://doi.org/10.1109/TVCG.2004.1260769},
doi = {10.1109/TVCG.2004.1260769},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tvcg/MajumderS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ccgrid/GaoJUDPS04,
author = {Han Gao and
Ivan R. Judson and
Thomas D. Uram and
Terry Disz and
Michael E. Papka and
Rick L. Stevens},
title = {Capability matching of data streams with network services},
booktitle = {4th {IEEE/ACM} International Symposium on Cluster Computing and the
Grid (CCGrid 2004), April 19-22, 2004, Chicago, Illinois, {USA}},
pages = {419--425},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/CCGrid.2004.1336596},
doi = {10.1109/CCGRID.2004.1336596},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ccgrid/GaoJUDPS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/WuGS04,
author = {Xingfu Wu and
Jonathan Geisler and
Rick Stevens},
title = {Isocoupling: Reusing Kernel Coupling Values to Predict the Performance
of Parallel Applications},
booktitle = {18th International Parallel and Distributed Processing Symposium {(IPDPS}
2004), {CD-ROM} / Abstracts Proceedings, 26-30 April 2004, Santa Fe,
New Mexico, {USA}},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/IPDPS.2004.1302960},
doi = {10.1109/IPDPS.2004.1302960},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/WuGS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/mk/04/Stevens04,
author = {Rick Stevens},
editor = {Ian T. Foster and
Carl Kesselman},
title = {Group-Oriented Collaboration},
booktitle = {The Grid 2 - Blueprint for a New Computing Infrastructure, Second
Edition},
series = {The Morgan Kaufmann Series in Computer Architecture and Design},
pages = {191--199},
publisher = {Morgan Kaufmann},
year = {2004},
url = {https://doi.org/10.1016/b978-155860933-4/50019-5},
doi = {10.1016/B978-155860933-4/50019-5},
timestamp = {Mon, 18 May 2020 15:59:19 +0200},
biburl = {https://dblp.org/rec/books/mk/04/Stevens04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cluster/TaylorS03,
author = {Valerie E. Taylor and
Rick L. Stevens},
title = {Introduction: Performance Analysis and Modeling},
journal = {Clust. Comput.},
volume = {6},
number = {4},
pages = {285},
year = {2003},
url = {https://doi.org/10.1023/A:1025762405175},
doi = {10.1023/A:1025762405175},
timestamp = {Tue, 29 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cluster/TaylorS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/internet/StevensPD03,
author = {Rick L. Stevens and
Michael E. Papka and
Terry Disz},
title = {Prototyping the Workspaces of the Future},
journal = {{IEEE} Internet Comput.},
volume = {7},
number = {4},
pages = {51--58},
year = {2003},
url = {https://doi.org/10.1109/MIC.2003.1215660},
doi = {10.1109/MIC.2003.1215660},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/internet/StevensPD03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigmetrics/TaylorWS03,
author = {Valerie E. Taylor and
Xingfu Wu and
Rick L. Stevens},
title = {Prophesy: an infrastructure for performance analysis and modeling
of parallel and grid applications},
journal = {{SIGMETRICS} Perform. Evaluation Rev.},
volume = {30},
number = {4},
pages = {13--18},
year = {2003},
url = {https://doi.org/10.1145/773056.773060},
doi = {10.1145/773056.773060},
timestamp = {Sat, 25 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sigmetrics/TaylorWS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ISCApdcs/GeislerTWS03,
author = {Jonathan Geisler and
Valerie E. Taylor and
Xingfu Wu and
Rick L. Stevens},
editor = {Seong{-}Moo Yoo and
Hee Yong Youn},
title = {Using Kernel Coupling to Improve the Performance of Multithreaded
Applications},
booktitle = {Proceedings of the {ISCA} 16th International Conference on Parallel
and Distributed Computing Systems, August 13-15, 2003, Atlantis Hotel,
Reno, Nevada, {USA}},
pages = {361--368},
publisher = {{ISCA}},
year = {2003},
timestamp = {Mon, 09 Aug 2021 16:35:48 +0200},
biburl = {https://dblp.org/rec/conf/ISCApdcs/GeislerTWS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigsoft/DAdderioDLS02,
author = {Luciana D'Adderio and
Rick G. Dewar and
Ashley D. Lloyd and
Perdita Stevens},
title = {Has the pattern emperor any clothes?: a controversy in three acts},
journal = {{ACM} {SIGSOFT} Softw. Eng. Notes},
volume = {27},
number = {1},
pages = {31--35},
year = {2002},
url = {https://doi.org/10.1145/566493.1148026},
doi = {10.1145/566493.1148026},
timestamp = {Thu, 17 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sigsoft/DAdderioDLS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/TaylorWGS02,
author = {Valerie E. Taylor and
Xingfu Wu and
Jonathan Geisler and
Rick L. Stevens},
title = {Using Kernel Couplings to Predict Parallel Application Performance},
booktitle = {11th {IEEE} International Symposium on High Performance Distributed
Computing {(HPDC-11} 2002), 23-26 July 2002, Edinburgh, Scotland,
{UK}},
pages = {125--134},
publisher = {{IEEE} Computer Society},
year = {2002},
url = {https://doi.org/10.1109/HPDC.2002.1029910},
doi = {10.1109/HPDC.2002.1029910},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/hpdc/TaylorWGS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/GaoTHWLPSSSH02,
author = {Guang R. Gao and
Kevin B. Theobald and
Ziang Hu and
Haiping Wu and
Jizhu Lu and
Keshav Pingali and
Paul Stodghill and
Thomas L. Sterling and
Rick Stevens and
Mark Hereld},
title = {Next Generation System Software for Future High-End Computing Systems},
booktitle = {16th International Parallel and Distributed Processing Symposium {(IPDPS}
2002), 15-19 April 2002, Fort Lauderdale, FL, USA, CD-ROM/Abstracts
Proceedings},
publisher = {{IEEE} Computer Society},
year = {2002},
url = {https://doi.org/10.1109/IPDPS.2002.1016578},
doi = {10.1109/IPDPS.2002.1016578},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/GaoTHWLPSSSH02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vrst/MajumderS02,
author = {Aditi Majumder and
Rick Stevens},
editor = {Jiaoying Shi and
Larry F. Hodges and
Hanqiu Sun and
Qunsheng Peng},
title = {{LAM:} luminance attenuation map for photometric uniformity in projection
based displays},
booktitle = {Proceedings of the {ACM} Symposium on Virtual Reality Software and
Technology, {VRST} 2002, Hong Kong, China, November 11-13, 2002},
pages = {147--154},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/585740.585765},
doi = {10.1145/585740.585765},
timestamp = {Mon, 01 Mar 2021 13:46:59 +0100},
biburl = {https://dblp.org/rec/conf/vrst/MajumderS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ieeeams/TaylorWGLLHJS01,
author = {Valerie E. Taylor and
Xingfu Wu and
Jonathan Geisler and
Xin Li and
Zhiling Lan and
Mark Hereld and
Ivan R. Judson and
Rick L. Stevens},
title = {Prophesy: Automating the Modeling Process},
booktitle = {3rd Annual International Workshop on Active Middleware Services {(AMS}
2001), 6 August 2001, San Francisco, CA, {USA}},
pages = {3--11},
publisher = {{IEEE} Computer Society},
year = {2001},
url = {https://doi.org/10.1109/AMS.2001.993715},
doi = {10.1109/AMS.2001.993715},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ieeeams/TaylorWGLLHJS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ppsc/WuTGLLSHJ01,
author = {Xingfu Wu and
Valerie E. Taylor and
Jonathan Geisler and
Xin Li and
Zhiling Lan and
Rick L. Stevens and
Mark Hereld and
Ivan R. Judson},
title = {Design and Development of the Prophesy Performance Database for Distributed
Scientific Applications},
booktitle = {Proceedings of the Tenth {SIAM} Conference on Parallel Processing
for Scientific Computing, {PP} 2001, Portsmouth, Virginia, USA, March
12-14, 2001},
publisher = {{SIAM}},
year = {2001},
timestamp = {Wed, 03 Jul 2024 11:15:21 +0200},
biburl = {https://dblp.org/rec/conf/ppsc/WuTGLLSHJ01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cga/HereldJS00,
author = {Mark Hereld and
Ivan R. Judson and
Rick L. Stevens},
title = {Tutorial: Introduction to Building Projection-based Tiled Display
Systems},
journal = {{IEEE} Computer Graphics and Applications},
volume = {20},
number = {4},
pages = {22--28},
year = {2000},
url = {https://doi.org/10.1109/38.851746},
doi = {10.1109/38.851746},
timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cga/HereldJS00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cluster/ChoudharyKNMSLNMTTS00,
author = {Alok N. Choudhary and
Mahmut T. Kandemir and
Jaechun No and
Gokhan Memik and
Xiaohui Shen and
Wei{-}keng Liao and
Harsha S. Nagesh and
Sachin More and
Valerie E. Taylor and
Rajeev Thakur and
Rick L. Stevens},
title = {Data management for large-scale scientific computations in high performance
distributed systems},
journal = {Clust. Comput.},
volume = {3},
number = {1},
pages = {45--60},
year = {2000},
url = {https://doi.org/10.1023/A:1019063700437},
doi = {10.1023/A:1019063700437},
timestamp = {Tue, 29 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cluster/ChoudharyKNMSLNMTTS00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cse/RosnerCDFLNORTT00,
author = {Robert Rosner and
Alan C. Calder and
Jonathan Dursi and
Bruce Fryxell and
Donald Q. Lamb and
Jens C. Niemeyer and
Kevin Olson and
Paul M. Ricker and
Frank X. Timmes and
James W. Truran and
Henry M. Tufo and
Yuan{-}Nan Young and
Michael Zingale and
Ewing L. Lusk and
Rick Stevens},
title = {Flash code: studying astrophysical thermonuclear flashes},
journal = {Comput. Sci. Eng.},
volume = {2},
number = {2},
pages = {33--41},
year = {2000},
url = {https://doi.org/10.1109/5992.825747},
doi = {10.1109/5992.825747},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cse/RosnerCDFLNORTT00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/WuTGLLSHJ00,
author = {Xingfu Wu and
Valerie E. Taylor and
Jonathan Geisler and
Xin Li and
Zhiling Lan and
Rick L. Stevens and
Mark Hereld and
Ivan R. Judson},
title = {Prophesy: An Infrastructure for Analyzing and Modeling the Performance
of Parallel and Distributed Applications},
booktitle = {Proceedings of the Ninth {IEEE} International Symposium on High Performance
Distributed Computing, HPDC'00, Pittsburgh, Pennsylvania, USA, August
1-4, 2000},
pages = {302--303},
publisher = {{IEEE} Computer Society},
year = {2000},
url = {https://doi.org/10.1109/HPDC.2000.868668},
doi = {10.1109/HPDC.2000.868668},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/hpdc/WuTGLLSHJ00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/FosterCENS00,
author = {Ian T. Foster and
David E. Culler and
Deborah Estrin and
Harvey B. Newman and
Rick L. Stevens},
title = {The Ten Hottest Topics in Parallel and Distributed Computing for the
Next Millennium},
booktitle = {Proceedings of the 14th International Parallel {\&} Distributed
Processing Symposium (IPDPS'00), Cancun, Mexico, May 1-5, 2000},
pages = {471},
publisher = {{IEEE} Computer Society},
year = {2000},
url = {https://doi.ieeecomputersociety.org/10.1109/IPDPS.2000.10005},
doi = {10.1109/IPDPS.2000.10005},
timestamp = {Fri, 14 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ipps/FosterCENS00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/iee/DewarLPS99,
author = {Rick G. Dewar and
Ashley D. Lloyd and
Rob Pooley and
Perdita Stevens},
title = {Identifying nd communicting expertise in systems reengineering: a
patterns approach},
journal = {{IEE} Proc. Softw.},
volume = {146},
number = {3},
pages = {145--152},
year = {1999},
url = {https://doi.org/10.1049/ip-sen:19990614},
doi = {10.1049/IP-SEN:19990614},
timestamp = {Tue, 19 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/iee/DewarLPS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/visualization/Stevens99,
author = {Rick L. Stevens},
editor = {David S. Ebert and
Markus H. Gross and
Bernd Hamann},
title = {Capstone Address: ActiveSpaces - The Access Grid, Active Mural and
Advanced Visualization Systems},
booktitle = {10th {IEEE} Visualization Conference, {IEEE} Vis 1999, San Francisco,
CA, USA, October 24-29, 1999, Proceedings},
pages = {16},
publisher = {{IEEE} Computer Society and {ACM}},
year = {1999},
timestamp = {Wed, 12 Aug 2020 09:23:06 +0200},
biburl = {https://dblp.org/rec/conf/visualization/Stevens99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cacm/StevensWDC97,
author = {Rick Stevens and
Paul R. Woodward and
Thomas A. DeFanti and
Charles E. Catlett},
title = {From the {I-WAY} to the National Technology Grid},
journal = {Commun. {ACM}},
volume = {40},
number = {11},
pages = {50--60},
year = {1997},
url = {https://doi.org/10.1145/265684.265692},
doi = {10.1145/265684.265692},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cacm/StevensWDC97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jpdc/TaylorSA97,
author = {Valerie E. Taylor and
Rick L. Stevens and
Kathryn E. Arnold},
title = {Parallel Molecular Dynamics: Implications for Massively Parallel Machines},
journal = {J. Parallel Distributed Comput.},
volume = {45},
number = {2},
pages = {166--175},
year = {1997},
url = {https://doi.org/10.1006/jpdc.1997.1370},
doi = {10.1006/JPDC.1997.1370},
timestamp = {Sat, 22 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jpdc/TaylorSA97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/asap/DiszOS97,
author = {Terry Disz and
Robert Olson and
Rick L. Stevens},
title = {Performance model of the Argonne Voyager multimedia server},
booktitle = {1997 International Conference on Application-Specific Systems, Architectures,
and Processors {(ASAP} '97), 14-16 July 1997, Zurich, Switzerland},
pages = {316--327},
publisher = {{IEEE} Computer Society},
year = {1997},
url = {https://doi.org/10.1109/ASAP.1997.606837},
doi = {10.1109/ASAP.1997.606837},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/asap/DiszOS97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hcw/DiszPS97,
author = {Terry Disz and
Michael E. Papka and
Rick L. Stevens},
title = {UbiWorld: an environment integrating virtual reality, supercomputing,
and design},
booktitle = {6th Heterogeneous Computing Workshop, {HCW} 1997, Geneva, Switzerland,
April 1, 1997},
pages = {46},
publisher = {{IEEE} Computer Society},
year = {1997},
url = {https://doi.org/10.1109/HCW.1997.581409},
doi = {10.1109/HCW.1997.581409},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hcw/DiszPS97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/DiszJOS97,
author = {Terry Disz and
Ivan R. Judson and
Robert Olson and
Rick L. Stevens},
title = {The Argonne Voyager Multimedia Server},
booktitle = {Proceedings of the 6th International Symposium on High Performance
Distributed Computing, {HPDC} '97, Portland, OR, USA, August 5-8,
1997},
pages = {71--80},
publisher = {{IEEE} Computer Society},
year = {1997},
url = {https://doi.org/10.1109/HPDC.1997.622364},
doi = {10.1109/HPDC.1997.622364},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/DiszJOS97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cga/DeFantiBS96,
author = {Thomas A. DeFanti and
Maxine D. Brown and
Rick L. Stevens},
title = {Virtual Reality Over High-Speed Networks},
journal = {{IEEE} Computer Graphics and Applications},
volume = {16},
number = {4},
pages = {42},
year = {1996},
url = {https://doi.org/10.1109/MCG.1996.511851},
doi = {10.1109/MCG.1996.511851},
timestamp = {Sat, 20 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cga/DeFantiBS96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cga/TaylorCHCS96,
author = {Valerie E. Taylor and
Jian Chen and
Milana Huang and
Thomas Canfield and
Rick L. Stevens},
title = {Identifying and reducing critical lag in finite element simulations},
journal = {{IEEE} Computer Graphics and Applications},
volume = {16},
number = {4},
pages = {67--71},
year = {1996},
url = {https://doi.org/10.1109/38.511857},
doi = {10.1109/38.511857},
timestamp = {Sat, 20 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cga/TaylorCHCS96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijhpca/DeFantiFPSK96,
author = {Thomas A. DeFanti and
Ian T. Foster and
Michael E. Papka and
Rick Stevens and
Tim Kuhfuss},
title = {Overview of the I-Way: Wide-Area Visual Supercomputing},
journal = {Int. J. High Perform. Comput. Appl.},
volume = {10},
number = {2-3},
pages = {123--131},
year = {1996},
url = {https://doi.org/10.1177/109434209601000201},
doi = {10.1177/109434209601000201},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijhpca/DeFantiFPSK96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijhpca/TaylorHCSRL96,
author = {Valerie E. Taylor and
Milana Huang and
Thomas Canfield and
Rick Stevens and
Daniel A. Reed and
Stephen E. Lamm},
title = {Performance Modeling of Interactive, Immersive Virtual Environments
for Finite Element Simulations},
journal = {Int. J. High Perform. Comput. Appl.},
volume = {10},
number = {2-3},
pages = {145--156},
year = {1996},
url = {https://doi.org/10.1177/109434209601000203},
doi = {10.1177/109434209601000203},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijhpca/TaylorHCSRL96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/HarrisonGKBWSAHLFNTETSWFLS96,
author = {Robert J. Harrison and
Martyn F. Guest and
Ricky A. Kendall and
David E. Bernholdt and
Adrian T. Wong and
Mark Stave and
James L. Anchell and
Anthony C. Hess and
Rik J. Littlefield and
George L. Fann and
Jarek Nieplocha and
Greg S. Thomas and
David Elwood and
Jeffrey L. Tilson and
Ron L. Shepard and
Albert F. Wagner and
Ian T. Foster and
Ewing L. Lusk and
Rick Stevens},
title = {Toward high-performance computational chemistry: {II.} {A} scalable
self-consistent field program},
journal = {J. Comput. Chem.},
volume = {17},
number = {1},
pages = {124--132},
year = {1996},
url = {https://doi.org/10.1002/(SICI)1096-987X(19960115)17:1\<124::AID-JCC10\>3.0.CO;2},
doi = {10.1002/(SICI)1096-987X(19960115)17:1\<124::AID-JCC10\>3.0.CO;2},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcc/HarrisonGKBWSAHLFNTETSWFLS96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/asap/TaylorCCS96,
author = {Valerie E. Taylor and
Jian Chen and
Thomas Canfield and
Rick L. Stevens},
title = {A Decomposition Method For Efficient Use Of Distributed Supercomputers
For Finite Element Applications},
booktitle = {1996 International Conference on Application-Specific Systems, Architectures,
and Processors {(ASAP} '96), August 19-23, 1996, Chicago, {IL} , {USA}},
pages = {12--24},
publisher = {{IEEE} Computer Society},
year = {1996},
url = {https://doi.org/10.1109/ASAP.1996.542797},
doi = {10.1109/ASAP.1996.542797},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/asap/TaylorCCS96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/FosterPS96,
author = {Ian T. Foster and
Michael E. Papka and
Rick L. Stevens},
title = {Tools for Distributed Collaborative Environments: {A} Research Agenda},
booktitle = {Proceedings of the 5th International Symposium on High Performance
Distributed Computing {(HPDC} '96), Syracuse, NY, USA, August 6-9,
1996},
pages = {23--28},
publisher = {{IEEE} Computer Society},
year = {1996},
url = {https://doi.org/10.1109/HPDC.1996.546170},
doi = {10.1109/HPDC.1996.546170},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/FosterPS96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/PapkaS96,
author = {Michael E. Papka and
Rick L. Stevens},
title = {UbiWorld: An Environment Integrating Virtual Reality, Supercomputing
and Design},
booktitle = {Proceedings of the 5th International Symposium on High Performance
Distributed Computing {(HPDC} '96), Syracuse, NY, USA, August 6-9,
1996},
pages = {306--307},
publisher = {{IEEE} Computer Society},
year = {1996},
url = {https://doi.org/10.1109/HPDC.1996.546200},
doi = {10.1109/HPDC.1996.546200},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/PapkaS96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ieeecc/ChoudharyFS95,
author = {Alok N. Choudhary and
Ian T. Foster and
Rick Stevens},
title = {Multimedia Applications and High-Performance Computing},
journal = {{IEEE} Parallel Distributed Technol. Syst. Appl.},
volume = {3},
number = {2},
pages = {2--3},
year = {1995},
url = {http://doi.ieeecomputersociety.org/10.1109/MCC.1995.10007},
doi = {10.1109/MCC.1995.10007},
timestamp = {Mon, 18 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ieeecc/ChoudharyFS95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ieeecc/DiszEHNOPS95,
author = {Terrence Disz and
R{\'{e}}my Evard and
Mark Henderson and
William Nickless and
Robert Olson and
Michael E. Papka and
Rick Stevens},
title = {Designing the future of collaborative science: Argonne's Futures Laboratory},
journal = {{IEEE} Parallel Distributed Technol. Syst. Appl.},
volume = {3},
number = {2},
pages = {14--21},
year = {1995},
url = {https://doi.org/10.1109/88.393228},
doi = {10.1109/88.393228},
timestamp = {Mon, 18 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ieeecc/DiszEHNOPS95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/BrowneDFHKSOR95,
author = {Shirley Browne and
Jack J. Dongarra and
Geoffrey C. Fox and
Kenneth A. Hawick and
Ken Kennedy and
Rick Stevens and
Robert Olson and
Tom Rowan},
editor = {Sidney Karin},
title = {Distributed Information Management in the National {HPCC} Software
Exchange},
booktitle = {Proceedings Supercomputing '95, San Diego, CA, USA, December 4-8,
1995},
publisher = {{ACM}},
year = {1995},
url = {http://dl.acm.org/citation.cfm?id=1039012},
doi = {10.1109/SUPERC.1995.27},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/BrowneDFHKSOR95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fgcs/Stevens94,
author = {Rick Stevens},
title = {High-performance computing and communications},
journal = {Future Gener. Comput. Syst.},
volume = {10},
number = {2-3},
pages = {159--167},
year = {1994},
url = {https://doi.org/10.1016/0167-739X(94)90014-0},
doi = {10.1016/0167-739X(94)90014-0},
timestamp = {Wed, 19 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/fgcs/Stevens94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/Stevens94,
author = {Rick Stevens},
title = {Multimedia Supercomputing: The Use of Supercomputers to Drive High-Performance
Multimedia Systems and Virtual Environments},
booktitle = {Proceedings of the Third International Symposium on High Performance
Distributed Computing, {HPDC} '94, San Francisco, CA, USA, April 2-5,
1994},
pages = {3},
publisher = {{IEEE}},
year = {1994},
url = {https://doi.org/10.1109/HPDC.1994.340268},
doi = {10.1109/HPDC.1994.340268},
timestamp = {Wed, 16 Oct 2019 14:14:50 +0200},
biburl = {https://dblp.org/rec/conf/hpdc/Stevens94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ppsc/FosterGS91,
author = {Ian T. Foster and
William Gropp and
Rick L. Stevens},
editor = {Jack J. Dongarra and
Ken Kennedy and
Paul Messina and
Danny C. Sorensen and
Robert G. Voigt},
title = {Parallel Scalability of the Spectral Transform Method},
booktitle = {Proceedings of the Fifth {SIAM} Conference on Parallel Processing
for Scientific Computing, Houston, Texas, USA, March 25-27, 1991},
pages = {307--312},
publisher = {{SIAM}},
year = {1991},
timestamp = {Wed, 03 Jul 2024 11:12:24 +0200},
biburl = {https://dblp.org/rec/conf/ppsc/FosterGS91.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ngc/LuskBDOOSWCSH90,
author = {Ewing L. Lusk and
Ralph Butler and
Terrence Disz and
Robert Olson and
Ross A. Overbeek and
Rick Stevens and
David H. D. Warren and
Alan Calderwood and
P{\'{e}}ter Szeredi and
Seif Haridi},
title = {The Aurora or-parallel Prolog system},
journal = {New Gener. Comput.},
volume = {7},
number = {2-3},
pages = {243--271},
year = {1990},
url = {https://doi.org/10.1007/BF03037208},
doi = {10.1007/BF03037208},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ngc/LuskBDOOSWCSH90.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cade/WosWMOLSB90,
author = {Larry Wos and
Steve Winker and
William McCune and
Ross A. Overbeek and
Ewing L. Lusk and
Rick L. Stevens and
Ralph Butler},
editor = {Mark E. Stickel},
title = {Automated Reasoning Contributed to Mathematics and Logic},
booktitle = {10th International Conference on Automated Deduction, Kaiserslautern,
FRG, July 24-27, 1990, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {449},
pages = {485--499},
publisher = {Springer},
year = {1990},
url = {https://doi.org/10.1007/3-540-52885-7\_109},
doi = {10.1007/3-540-52885-7\_109},
timestamp = {Tue, 14 May 2019 10:00:39 +0200},
biburl = {https://dblp.org/rec/conf/cade/WosWMOLSB90.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icpp/FosterS90,
author = {Ian T. Foster and
Rick L. Stevens},
editor = {David A. Padua},
title = {Parallel Programming with Algorithmic Motifs},
booktitle = {Proceedings of the 1990 International Conference on Parallel Processing,
Urbana-Champaign, IL, USA, August 1990. Volume 2: Software},
pages = {26--34},
publisher = {Pennsylvania State University Press},
year = {1990},
timestamp = {Mon, 15 Jun 2015 19:00:07 +0200},
biburl = {https://dblp.org/rec/conf/icpp/FosterS90.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jar/WangS89,
author = {Tie{-}Cheng Wang and
Rick Stevens},
title = {Solving Open Problems in Right Alternative Rings with Z-Module Reasoning},
journal = {J. Autom. Reason.},
volume = {5},
number = {2},
pages = {141--165},
year = {1989},
url = {https://doi.org/10.1007/BF00243001},
doi = {10.1007/BF00243001},
timestamp = {Wed, 02 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jar/WangS89.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cade/Stevens88,
author = {Rick L. Stevens},
editor = {Ewing L. Lusk and
Ross A. Overbeek},
title = {Challenge Problems from Nonassociative Rings for Theorem Provers},
booktitle = {9th International Conference on Automated Deduction, Argonne, Illinois,
USA, May 23-26, 1988, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {310},
pages = {730--734},
publisher = {Springer},
year = {1988},
url = {https://doi.org/10.1007/BFb0012871},
doi = {10.1007/BFB0012871},
timestamp = {Tue, 14 May 2019 10:00:39 +0200},
biburl = {https://dblp.org/rec/conf/cade/Stevens88.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fgcs/LuskBDOOSWCSHBCCH88,
author = {Ewing L. Lusk and
Ralph Butler and
Terry Disz and
Robert Olson and
Ross A. Overbeek and
Rick L. Stevens and
David H. D. Warren and
Alan Calderwood and
P{\'{e}}ter Szeredi and
Seif Haridi and
Per Brand and
Mats Carlsson and
Andrzej Ciepielewski and
Bogumil Hausman},
title = {The Aurora Or-Parallel Prolog System},
booktitle = {Proceedings of the International Conference on Fifth Generation Computer
Systems, {FGCS} 1988, Tokyo, Japan, November 28-December 2, 1988},
pages = {819--830},
publisher = {{OHMSHA} Ltd. Tokyo and Springer-Verlag},
year = {1988},
timestamp = {Mon, 05 Aug 2019 17:00:40 +0200},
biburl = {https://dblp.org/rec/conf/fgcs/LuskBDOOSWCSHBCCH88.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclp/ButlerDLOOS88,
author = {Ralph Butler and
Terry Disz and
Ewing L. Lusk and
Robert Olson and
Ross A. Overbeek and
Rick L. Stevens},
editor = {Robert A. Kowalski and
Kenneth A. Bowen},
title = {Scheduling OR-Parallelism: An Argonne Perspective},
booktitle = {Logic Programming, Proceedings of the Fifth International Conference
and Symposium, Seattle, Washington, USA, August 15-19, 1988 {(2} Volumes)},
pages = {1590--1605},
publisher = {{MIT} Press},
year = {1988},
timestamp = {Sat, 23 Jun 2018 18:45:26 +0200},
biburl = {https://dblp.org/rec/conf/iclp/ButlerDLOOS88.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jar/Stevens87,
author = {Rick L. Stevens},
title = {Some Experiments in Nonassociative Ring Theory with an Automated Theorem
Prover},
journal = {J. Autom. Reason.},
volume = {3},
number = {2},
pages = {211--221},
year = {1987},
url = {https://doi.org/10.1007/BF00243209},
doi = {10.1007/BF00243209},
timestamp = {Wed, 02 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jar/Stevens87.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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