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@article{DBLP:journals/jcheminf/QabajaAAA14, author = {Ala Qabaja and Mohammed Alshalalfa and Eisa Alanazi and Reda Alhajj}, title = {Prediction of novel drug indications using network driven biological data prioritization and integration}, journal = {J. Cheminformatics}, volume = {6}, number = {1}, pages = {1}, year = {2014}, url = {https://doi.org/10.1186/1758-2946-6-1}, doi = {10.1186/1758-2946-6-1}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/QabajaAAA14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Al-ShalalfaA13, author = {Mohammed Al{-}Shalalfa and Reda Alhajj}, title = {Using context-specific effect of miRNAs to identify functional associations between miRNAs and gene signatures}, journal = {{BMC} Bioinform.}, volume = {14}, number = {{S-12}}, pages = {S1}, year = {2013}, url = {https://doi.org/10.1186/1471-2105-14-S12-S1}, doi = {10.1186/1471-2105-14-S12-S1}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Al-ShalalfaA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ejbsb/QabajaABA13, author = {Ala Qabaja and Mohammed Al{-}Shalalfa and Tarek A. Bismar and Reda Alhajj}, title = {Protein network-based Lasso regression model for the construction of disease-miRNA functional interactions}, journal = {{EURASIP} J. Bioinform. Syst. Biol.}, volume = {2013}, pages = {3}, year = {2013}, url = {https://doi.org/10.1186/1687-4153-2013-3}, doi = {10.1186/1687-4153-2013-3}, timestamp = {Thu, 18 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ejbsb/QabajaABA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/abi/Al-ShalalfaBA12, author = {Mohammed Al{-}Shalalfa and Tarek A. Bismar and Reda Alhajj}, title = {Detecting Cancer Outlier Genes with Potential Rearrangement Using Gene Expression Data and Biological Networks}, journal = {Adv. Bioinformatics}, volume = {2012}, pages = {373506:1--373506:13}, year = {2012}, url = {https://doi.org/10.1155/2012/373506}, doi = {10.1155/2012/373506}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/abi/Al-ShalalfaBA12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/abi/Alshalalfa12, author = {Mohammed Alshalalfa}, title = {MicroRNA Response Elements-Mediated miRNA-miRNA Interactions in Prostate Cancer}, journal = {Adv. Bioinformatics}, volume = {2012}, pages = {839837:1--839837:10}, year = {2012}, url = {https://doi.org/10.1155/2012/839837}, doi = {10.1155/2012/839837}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/abi/Alshalalfa12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AlshalalfaBGMA12, author = {Mohammed Alshalalfa and Gary D. Bader and Anna Goldenberg and Quaid Morris and Reda Alhajj}, title = {Detecting microRNAs of high influence on protein functional interaction networks: a prostate cancer case study}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {112}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-112}, doi = {10.1186/1752-0509-6-112}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AlshalalfaBGMA12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ida/OkashaEANAR12, author = {Mona Okasha and Abdallah M. ElSheikh and Mohammed Al{-}Shalalfa and Ghada Naji and Reda Alhajj and Jon G. Rokne}, title = {Functional characterization of drug-protein interactions network}, journal = {Intell. Data Anal.}, volume = {16}, number = {1}, pages = {137--152}, year = {2012}, url = {https://doi.org/10.3233/IDA-2011-0514}, doi = {10.3233/IDA-2011-0514}, timestamp = {Fri, 26 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ida/OkashaEANAR12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tsmc/Al-ShalalfaTNAPR12, author = {Mohammed Al{-}Shalalfa and Mehmet Tan and Ghada Naji and Reda Alhajj and Faruk Polat and Jon G. Rokne}, title = {Revealing miRNA Regulation and miRNA Target Prediction Using Constraint-Based Learning}, journal = {{IEEE} Trans. Syst. Man Cybern. Part {C}}, volume = {42}, number = {6}, pages = {1354--1364}, year = {2012}, url = {https://doi.org/10.1109/TSMCC.2012.2186801}, doi = {10.1109/TSMCC.2012.2186801}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tsmc/Al-ShalalfaTNAPR12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/Al-ShalalfaA12, author = {Mohammed Al{-}Shalalfa and Reda Alhajj}, title = {Integrating protein networks for identifying cooperative miRNA activity in disease gene signatures}, booktitle = {2012 {IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2012, Philadelphia, PA, USA, October 4-7, 2012}, pages = {1--8}, publisher = {{IEEE} Computer Society}, year = {2012}, url = {https://doi.org/10.1109/BIBM.2012.6392728}, doi = {10.1109/BIBM.2012.6392728}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/Al-ShalalfaA12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cibcb/Al-ShalalfaQBA12, author = {Mohammed Al{-}Shalalfa and Ala Qabaja and Tarek A. Bismar and Reda Alhajj}, title = {Functional characterization of miRNAs in prostate cancer using functional protein networks}, booktitle = {2012 {IEEE} Symposium on Computational Intelligence in Bioinformatics and Computational Biology, {CIBCB} 2012, San Diego, CA, USA, May 9-12, 2012}, pages = {1--8}, publisher = {{IEEE}}, year = {2012}, url = {https://doi.org/10.1109/CIBCB.2012.6217203}, doi = {10.1109/CIBCB.2012.6217203}, timestamp = {Wed, 16 Oct 2019 14:14:48 +0200}, biburl = {https://dblp.org/rec/conf/cibcb/Al-ShalalfaQBA12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijdmb/Al-ShalalfaNQAR11, author = {Mohammed Al{-}Shalalfa and Ghada Naji and Ala Qabaja and Reda Alhajj and Jon G. Rokne}, title = {Combining multiple perspective as intelligent agents into robust approach for biomarker detection in gene expression data}, journal = {Int. J. Data Min. Bioinform.}, volume = {5}, number = {3}, pages = {332--350}, year = {2011}, url = {https://doi.org/10.1504/IJDMB.2011.040388}, doi = {10.1504/IJDMB.2011.040388}, timestamp = {Mon, 11 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijdmb/Al-ShalalfaNQAR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijnvo/Al-ShalalfaOAR11, author = {Mohammed Al{-}Shalalfa and Tansel {\"{O}}zyer and Reda Alhajj and Jon G. Rokne}, title = {Discovering cancer biomarkers: from {DNA} to communities of genes}, journal = {Int. J. Netw. Virtual Organisations}, volume = {8}, number = {1/2}, pages = {158--178}, year = {2011}, url = {https://doi.org/10.1504/IJNVO.2011.037166}, doi = {10.1504/IJNVO.2011.037166}, timestamp = {Sat, 25 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijnvo/Al-ShalalfaOAR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/TanAAP11, author = {Mehmet Tan and Mohammed Al{-}Shalalfa and Reda Alhajj and Faruk Polat}, title = {Influence of Prior Knowledge in Constraint-Based Learning of Gene Regulatory Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {8}, number = {1}, pages = {130--142}, year = {2011}, url = {https://doi.org/10.1109/TCBB.2009.58}, doi = {10.1109/TCBB.2009.58}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/TanAAP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tkde/RasheedAA11, author = {Faraz Rasheed and Mohammed Al{-}Shalalfa and Reda Alhajj}, title = {Efficient Periodicity Mining in Time Series Databases Using Suffix Trees}, journal = {{IEEE} Trans. Knowl. Data Eng.}, volume = {23}, number = {1}, pages = {79--94}, year = {2011}, url = {https://doi.org/10.1109/TKDE.2010.76}, doi = {10.1109/TKDE.2010.76}, timestamp = {Sat, 20 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tkde/RasheedAA11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/kais/KianmehrAA10, author = {Keivan Kianmehr and Mohammed Al{-}Shalalfa and Reda Alhajj}, title = {Fuzzy clustering-based discretization for gene expression classification}, journal = {Knowl. Inf. Syst.}, volume = {24}, number = {3}, pages = {441--465}, year = {2010}, url = {https://doi.org/10.1007/s10115-009-0214-2}, doi = {10.1007/S10115-009-0214-2}, timestamp = {Sun, 28 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/kais/KianmehrAA10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/igi/Taniar10/KhabbazKAA10, author = {Mohammad Khabbaz and Keivan Kianmehr and Mohammed Al{-}Shalalfa and Reda Alhajj}, editor = {David Taniar and Laura Irina Rusu}, title = {An Integrated Framework for Fuzzy Classification and Analysis of Gene Expression Data}, booktitle = {Strategic Advancements in Utilizing Data Mining and Warehousing Technologies: New Concepts and Developments}, pages = {151--177}, publisher = {{IGI} Global}, year = {2010}, url = {http://www.igi-global.com/Bookstore/chapter.aspx?titleid=40403}, timestamp = {Tue, 16 May 2017 14:01:33 +0200}, biburl = {https://dblp.org/rec/books/igi/Taniar10/KhabbazKAA10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ida/AlshalalfahA09, author = {Mohammed Al{-}Shalalfa and Reda Alhajj}, title = {Cancer class prediction: Two stage clustering approach to identify informative genes}, journal = {Intell. Data Anal.}, volume = {13}, number = {4}, pages = {671--686}, year = {2009}, url = {https://doi.org/10.3233/IDA-2009-0386}, doi = {10.3233/IDA-2009-0386}, timestamp = {Fri, 26 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ida/AlshalalfahA09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijns/RasheedAA09, author = {Faraz Rasheed and Mohammed Al{-}Shalalfa and Reda Alhajj}, title = {Adaptive Machine Learning Technique for Periodicity Detection in Biological Sequences}, journal = {Int. J. Neural Syst.}, volume = {19}, number = {1}, pages = {11--24}, year = {2009}, url = {https://doi.org/10.1142/S012906570900180X}, doi = {10.1142/S012906570900180X}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ijns/RasheedAA09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/QabajaAAR09, author = {Ala Qabaja and Mohammed Al{-}Shalalfa and Reda Alhajj and Jon G. Rokne}, title = {Multiagent Approach for Identifying Cancer Biomarkers}, booktitle = {2009 {IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2009, Washington, DC, USA, November 1-4, 2009, Proceedings}, pages = {228--233}, publisher = {{IEEE} Computer Society}, year = {2009}, url = {https://doi.org/10.1109/BIBM.2009.63}, doi = {10.1109/BIBM.2009.63}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/QabajaAAR09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/sci/Al-ShalalfaQAR09, author = {Mohammed Al{-}Shalalfa and Ala Qabaja and Reda Alhajj and Jon G. Rokne}, editor = {Chee Peng Lim and Lakhmi C. Jain and Satchidananda Dehuri}, title = {Identifying Disease-Related Biomarkers by Studying Social Networks of Genes}, booktitle = {Innovations in Swarm Intelligence}, series = {Studies in Computational Intelligence}, volume = {248}, pages = {237--253}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04225-6\_12}, doi = {10.1007/978-3-642-04225-6\_12}, timestamp = {Wed, 14 Nov 2018 10:12:17 +0100}, biburl = {https://dblp.org/rec/series/sci/Al-ShalalfaQAR09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/dataware/Alshalalfa09, author = {Mohammed Al{-}Shalalfa}, editor = {John Wang}, title = {Data Pattern Tutor for AprioriAll and PrefixSpan}, booktitle = {Encyclopedia of Data Warehousing and Mining, Second Edition {(4} Volumes)}, pages = {531--537}, publisher = {{IGI} Global}, year = {2009}, url = {http://www.igi-global.com/Bookstore/Chapter.aspx?TitleId=10871}, timestamp = {Wed, 12 Jul 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/reference/dataware/Alshalalfa09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jdwm/KhabbazKAA08, author = {Mohammad Khabbaz and Keivan Kianmehr and Mohammed Al{-}Shalalfa and Reda Alhajj}, title = {Effectiveness of Fuzzy Classifier Rules in Capturing Correlations between Genes}, journal = {Int. J. Data Warehous. Min.}, volume = {4}, number = {4}, pages = {62--83}, year = {2008}, url = {https://doi.org/10.4018/jdwm.2008100104}, doi = {10.4018/JDWM.2008100104}, timestamp = {Thu, 20 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jdwm/KhabbazKAA08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibe/AlshalalfaAR08, author = {Mohammed Al{-}Shalalfa and Reda Alhajj and Jon G. Rokne}, title = {Combining singular value decomposition and t-test into hybrid approach for significant gene extraction from microarray data}, booktitle = {Proceedings of the 8th {IEEE} International Conference on Bioinformatics and Bioengineering, {BIBE} 2008, October 8-10, 2008, Athens, Greece}, pages = {1--6}, publisher = {{IEEE}}, year = {2008}, url = {https://doi.org/10.1109/BIBE.2008.4696691}, doi = {10.1109/BIBE.2008.4696691}, timestamp = {Wed, 16 Oct 2019 14:14:56 +0200}, biburl = {https://dblp.org/rec/conf/bibe/AlshalalfaAR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bird/Al-ShalalfaA08, author = {Mohammed Al{-}Shalalfa and Reda Alhajj}, editor = {Mourad Elloumi and Josef K{\"{u}}ng and Michal Linial and Robert F. Murphy and Kristan Schneider and Cristian Toma}, title = {Motif Location Prediction by Divide and Conquer}, booktitle = {Bioinformatics Research and Development, Second International Conference, {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings}, series = {Communications in Computer and Information Science}, volume = {13}, pages = {102--113}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-70600-7\_8}, doi = {10.1007/978-3-540-70600-7\_8}, timestamp = {Fri, 26 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bird/Al-ShalalfaA08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cibcb/TanAAP08, author = {Mehmet Tan and Mohammed Al{-}Shalalfa and Reda Alhajj and Faruk Polat}, title = {Combining multiple types of biological data in constraint-based learning of gene regulatory networks}, booktitle = {Proceedings of the 2008 {IEEE} Symposium on Computational Intelligence in Bioinformatics and Computational Biology, {CIBCB} 2008, Sun Valley Resort, Sun Valley, Idaho, USA, September 15-17, 2008}, pages = {90--97}, publisher = {{IEEE}}, year = {2008}, url = {https://doi.org/10.1109/CIBCB.2008.4675764}, doi = {10.1109/CIBCB.2008.4675764}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cibcb/TanAAP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ismis/KianmehrAA08, author = {Keivan Kianmehr and Mohammed Al{-}Shalalfa and Reda Alhajj}, editor = {Aijun An and Stan Matwin and Zbigniew W. Ras and Dominik Slezak}, title = {Effectiveness of Fuzzy Discretization for Class Association Rule-Based Classification}, booktitle = {Foundations of Intelligent Systems, 17th International Symposium, {ISMIS} 2008, Toronto, Canada, May 20-23, 2008, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4994}, pages = {298--308}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-68123-6\_33}, doi = {10.1007/978-3-540-68123-6\_33}, timestamp = {Mon, 28 Aug 2023 21:17:48 +0200}, biburl = {https://dblp.org/rec/conf/ismis/KianmehrAA08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/aina/Al-ShalalfaA07, author = {Mohammed Al{-}Shalalfa and Reda Alhajj}, title = {Attractive Feature Reduction Approach for Colon Data Classification}, booktitle = {21st International Conference on Advanced Information Networking and Applications {(AINA} 2007), Workshops Proceedings, Volume 1, May 21-23, 2007, Niagara Falls, Canada}, pages = {678--683}, publisher = {{IEEE} Computer Society}, year = {2007}, url = {https://doi.org/10.1109/AINAW.2007.103}, doi = {10.1109/AINAW.2007.103}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/aina/Al-ShalalfaA07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/aina/Al-ShalalfaA07a, author = {Mohammed Al{-}Shalalfa and Reda Alhajj}, title = {Application of Double Clustering to Gene Expression Data for Class Prediction}, booktitle = {21st International Conference on Advanced Information Networking and Applications {(AINA} 2007), Workshops Proceedings, Volume 1, May 21-23, 2007, Niagara Falls, Canada}, pages = {733--738}, publisher = {{IEEE} Computer Society}, year = {2007}, url = {https://doi.org/10.1109/AINAW.2007.97}, doi = {10.1109/AINAW.2007.97}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/aina/Al-ShalalfaA07a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/dawak/KhabbazKAA07, author = {Mohammad Khabbaz and Keivan Kianmehr and Mohammed Al{-}Shalalfa and Reda Alhajj}, editor = {Il Yeal Song and Johann Eder and Tho Manh Nguyen}, title = {Fuzzy Classifier Based Feature Reduction for Better Gene Selection}, booktitle = {Data Warehousing and Knowledge Discovery, 9th International Conference, DaWaK 2007, Regensburg, Germany, September 3-7, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4654}, pages = {334--344}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-74553-2\_31}, doi = {10.1007/978-3-540-74553-2\_31}, timestamp = {Thu, 18 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/dawak/KhabbazKAA07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ideal/RasheedAA07, author = {Faraz Rasheed and Mohammed Al{-}Shalalfa and Reda Alhajj}, editor = {Hujun Yin and Peter Ti{\~{n}}o and Emilio Corchado and William Byrne and Xin Yao}, title = {Adapting Machine Learning Technique for Periodicity Detection in Nucleosomal Locations in Sequences}, booktitle = {Intelligent Data Engineering and Automated Learning - {IDEAL} 2007, 8th International Conference, Birmingham, UK, December 16-19, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4881}, pages = {870--879}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-77226-2\_87}, doi = {10.1007/978-3-540-77226-2\_87}, timestamp = {Tue, 14 May 2019 10:00:45 +0200}, biburl = {https://dblp.org/rec/conf/ideal/RasheedAA07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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