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@article{DBLP:journals/jhir/SivarajkumarMORHLHVW24,
author = {Sonish Sivarajkumar and
Haneef Ahamed Mohammad and
David Oniani and
Kirk Roberts and
William R. Hersh and
Hongfang Liu and
Daqing He and
Shyam Visweswaran and
Yanshan Wang},
title = {Clinical Information Retrieval: {A} Literature Review},
journal = {J. Heal. Informatics Res.},
volume = {8},
number = {2},
pages = {313--352},
year = {2024},
url = {https://doi.org/10.1007/s41666-024-00159-4},
doi = {10.1007/S41666-024-00159-4},
timestamp = {Thu, 02 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jhir/SivarajkumarMORHLHVW24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuromorphic/RobertsonKCH24,
author = {Joshua Robertson and
Paul Kirkland and
Gaetano Di Caterina and
Antonio Hurtado},
title = {VCSEL-based photonic spiking neural networks for ultrafast detection
and tracking},
journal = {Neuromorph. Comput. Eng.},
volume = {4},
number = {1},
pages = {14010},
year = {2024},
url = {https://doi.org/10.1088/2634-4386/ad2d5c},
doi = {10.1088/2634-4386/AD2D5C},
timestamp = {Tue, 09 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neuromorphic/RobertsonKCH24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/KirkWLL24,
author = {James R. Kirk and
Robert E. Wray and
Peter Lindes and
John E. Laird},
editor = {Michael J. Wooldridge and
Jennifer G. Dy and
Sriraam Natarajan},
title = {Improving Knowledge Extraction from LLMs for Task Learning through
Agent Analysis},
booktitle = {Thirty-Eighth {AAAI} Conference on Artificial Intelligence, {AAAI}
2024, Thirty-Sixth Conference on Innovative Applications of Artificial
Intelligence, {IAAI} 2024, Fourteenth Symposium on Educational Advances
in Artificial Intelligence, {EAAI} 2014, February 20-27, 2024, Vancouver,
Canada},
pages = {18390--18398},
publisher = {{AAAI} Press},
year = {2024},
url = {https://doi.org/10.1609/aaai.v38i16.29799},
doi = {10.1609/AAAI.V38I16.29799},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aaai/KirkWLL24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2403-17135,
author = {Yumeng Yang and
Ashley Gilliam and
Ethan B. Ludmir and
Kirk Roberts},
title = {Exploring the Generalization of Cancer Clinical Trial Eligibility
Classifiers Across Diseases},
journal = {CoRR},
volume = {abs/2403.17135},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2403.17135},
doi = {10.48550/ARXIV.2403.17135},
eprinttype = {arXiv},
eprint = {2403.17135},
timestamp = {Wed, 10 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2403-17135.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2405-12147,
author = {Robert E. Wray and
James R. Kirk and
John E. Laird},
title = {Eliciting Problem Specifications via Large Language Models},
journal = {CoRR},
volume = {abs/2405.12147},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2405.12147},
doi = {10.48550/ARXIV.2405.12147},
eprinttype = {arXiv},
eprint = {2405.12147},
timestamp = {Tue, 18 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2405-12147.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2406-06723,
author = {Enshuo Hsu and
Kirk Roberts},
title = {Leveraging Large Language Models for Knowledge-free Weak Supervision
in Clinical Natural Language Processing},
journal = {CoRR},
volume = {abs/2406.06723},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2406.06723},
doi = {10.48550/ARXIV.2406.06723},
eprinttype = {arXiv},
eprint = {2406.06723},
timestamp = {Mon, 08 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2406-06723.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/SoniDR23,
author = {Sarvesh Soni and
Surabhi Datta and
Kirk Roberts},
title = {quEHRy: a question answering system to query electronic health records},
journal = {J. Am. Medical Informatics Assoc.},
volume = {30},
number = {6},
pages = {1091--1102},
year = {2023},
url = {https://doi.org/10.1093/jamia/ocad050},
doi = {10.1093/JAMIA/OCAD050},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/SoniDR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/SinghRCCFM23,
author = {Tavleen Singh and
Kirk Roberts and
Trevor Cohen and
Nathan K. Cobb and
Amy Franklin and
Sahiti Myneni},
title = {Discerning conversational context in online health communities for
personalized digital behavior change solutions using Pragmatics to
Reveal Intent in Social Media {(PRISM)} framework},
journal = {J. Biomed. Informatics},
volume = {140},
pages = {104324},
year = {2023},
url = {https://doi.org/10.1016/j.jbi.2023.104324},
doi = {10.1016/J.JBI.2023.104324},
timestamp = {Sat, 13 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/SinghRCCFM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/kais/ZhangPYZSRCW23,
author = {Zitong Zhang and
Braja Gopal Patra and
Ashraf Yaseen and
Jie Zhu and
Rachit Sabharwal and
Kirk Roberts and
Tru Cao and
Hulin Wu},
title = {Scholarly recommendation systems: a literature survey},
journal = {Knowl. Inf. Syst.},
volume = {65},
number = {11},
pages = {4433--4478},
year = {2023},
url = {https://doi.org/10.1007/s10115-023-01901-x},
doi = {10.1007/S10115-023-01901-X},
timestamp = {Wed, 01 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/kais/ZhangPYZSRCW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/HaoARC23,
author = {Xubing Hao and
Rashmie Abeysinghe and
Kirk Roberts and
Licong Cui},
title = {Logical definition-based identification of potential missing concepts
in {SNOMED} {CT}},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {23},
number = {1},
pages = {87},
year = {2023},
url = {https://doi.org/10.1186/s12911-023-02183-7},
doi = {10.1186/S12911-023-02183-7},
timestamp = {Fri, 02 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/HaoARC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/WenHFLMWRBHL23,
author = {Andrew Wen and
Huan He and
Sunyang Fu and
Sijia Liu and
Kurt Miller and
Liwei Wang and
Kirk E. Roberts and
Steven Bedrick and
William R. Hersh and
Hongfang Liu},
title = {The {IMPACT} framework and implementation for accessible in silico
clinical phenotyping in the digital era},
journal = {npj Digit. Medicine},
volume = {6},
year = {2023},
url = {https://doi.org/10.1038/s41746-023-00878-9},
doi = {10.1038/S41746-023-00878-9},
timestamp = {Sat, 08 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/npjdm/WenHFLMWRBHL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/PachadeDDMANRSG23,
author = {Samiksha Pachade and
Surabhi Datta and
Y. Dong and
Sergio Salazar Marioni and
Rania Abdelkhaleq and
A. Niktabe and
Kirk Roberts and
Sunil A. Sheth and
Luca Giancardo},
title = {Self-Supervised Learning with Radiology Reports, {A} Comparative Analysis
of Strategies for Large Vessel Occlusion and Brain {CTA} Images},
booktitle = {20th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2023, Cartagena, Colombia, April 18-21, 2023},
pages = {1--5},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/ISBI53787.2023.10230623},
doi = {10.1109/ISBI53787.2023.10230623},
timestamp = {Tue, 05 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/isbi/PachadeDDMANRSG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/www/AmithCRT23,
author = {Muhammad Amith and
Licong Cui and
Kirk Roberts and
Cui Tao},
editor = {Ying Ding and
Jie Tang and
Juan F. Sequeda and
Lora Aroyo and
Carlos Castillo and
Geert{-}Jan Houben},
title = {Application of an ontology for model cards to generate computable
artifacts for linking machine learning information from biomedical
research},
booktitle = {Companion Proceedings of the {ACM} Web Conference 2023, {WWW} 2023,
Austin, TX, USA, 30 April 2023 - 4 May 2023},
pages = {820--825},
publisher = {{ACM}},
year = {2023},
url = {https://doi.org/10.1145/3543873.3587601},
doi = {10.1145/3543873.3587601},
timestamp = {Mon, 28 Aug 2023 21:17:11 +0200},
biburl = {https://dblp.org/rec/conf/www/AmithCRT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/acl-clinicalnlp/2023,
editor = {Tristan Naumann and
Asma Ben Abacha and
Steven Bethard and
Kirk Roberts and
Anna Rumshisky},
title = {Proceedings of the 5th Clinical Natural Language Processing Workshop,
ClinicalNLP@ACL 2023, Toronto, Canada, July 14, 2023},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://aclanthology.org/volumes/2023.clinicalnlp-1/},
isbn = {978-1-959429-88-3},
timestamp = {Sat, 15 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl-clinicalnlp/2023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2303-11991,
author = {Muhammad Amith and
Licong Cui and
Kirk Roberts and
Cui Tao},
title = {Application of an ontology for model cards to generate computable
artifacts for linking machine learning information from biomedical
research},
journal = {CoRR},
volume = {abs/2303.11991},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2303.11991},
doi = {10.48550/ARXIV.2303.11991},
eprinttype = {arXiv},
eprint = {2303.11991},
timestamp = {Wed, 22 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2303-11991.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2305-11948,
author = {Surabhi Datta and
Tasneem Kaochar and
Hio Cheng Lam and
Nelly Nwosu and
Luca Giancardo and
Alice Z. Chuang and
Robert M. Feldman and
Kirk Roberts},
title = {Eye-SpatialNet: Spatial Information Extraction from Ophthalmology
Notes},
journal = {CoRR},
volume = {abs/2305.11948},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2305.11948},
doi = {10.48550/ARXIV.2305.11948},
eprinttype = {arXiv},
eprint = {2305.11948},
timestamp = {Fri, 26 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2305-11948.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2306-02549,
author = {Alaleh Hamidi and
Kirk Roberts},
title = {Evaluation of {AI} Chatbots for Patient-Specific {EHR} Questions},
journal = {CoRR},
volume = {abs/2306.02549},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2306.02549},
doi = {10.48550/ARXIV.2306.02549},
eprinttype = {arXiv},
eprint = {2306.02549},
timestamp = {Tue, 13 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2306-02549.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2306-06770,
author = {James R. Kirk and
Robert E. Wray and
Peter Lindes},
title = {Improving Knowledge Extraction from LLMs for Robotic Task Learning
through Agent Analysis},
journal = {CoRR},
volume = {abs/2306.06770},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2306.06770},
doi = {10.48550/ARXIV.2306.06770},
eprinttype = {arXiv},
eprint = {2306.06770},
timestamp = {Fri, 16 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2306-06770.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2309-07812,
author = {Yumeng Yang and
Soumya Jayaraj and
Ethan B. Ludmir and
Kirk Roberts},
title = {Text Classification of Cancer Clinical Trial Eligibility Criteria},
journal = {CoRR},
volume = {abs/2309.07812},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2309.07812},
doi = {10.48550/ARXIV.2309.07812},
eprinttype = {arXiv},
eprint = {2309.07812},
timestamp = {Wed, 20 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2309-07812.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2310-06846,
author = {James R. Kirk and
Robert E. Wray and
John E. Laird},
title = {Exploiting Language Models as a Source of Knowledge for Cognitive
Agents},
journal = {CoRR},
volume = {abs/2310.06846},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2310.06846},
doi = {10.48550/ARXIV.2310.06846},
eprinttype = {arXiv},
eprint = {2310.06846},
timestamp = {Tue, 24 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2310-06846.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2310-08759,
author = {Jayetri Bardhan and
Kirk Roberts and
Daisy Zhe Wang},
title = {Question Answering for Electronic Health Records: {A} Scoping Review
of datasets and models},
journal = {CoRR},
volume = {abs/2310.08759},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2310.08759},
doi = {10.48550/ARXIV.2310.08759},
eprinttype = {arXiv},
eprint = {2310.08759},
timestamp = {Wed, 25 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2310-08759.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AmithCZRJLYT22,
author = {Muhammad Tuan Amith and
Licong Cui and
Degui Zhi and
Kirk Roberts and
Xiaoqian Jiang and
Fang Li and
Evan Yu and
Cui Tao},
title = {Toward a standard formal semantic representation of the model card
report},
journal = {{BMC} Bioinform.},
volume = {23},
number = {1},
pages = {281},
year = {2022},
url = {https://doi.org/10.1186/s12859-022-04797-6},
doi = {10.1186/S12859-022-04797-6},
timestamp = {Mon, 08 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AmithCZRJLYT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/DattaR22,
author = {Surabhi Datta and
Kirk Roberts},
title = {Fine-grained spatial information extraction in radiology as two-turn
question answering},
journal = {Int. J. Medical Informatics},
volume = {158},
number = {February},
pages = {104628},
year = {2022},
url = {https://doi.org/10.1016/j.ijmedinf.2021.104628},
doi = {10.1016/J.IJMEDINF.2021.104628},
timestamp = {Wed, 09 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijmi/DattaR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/KumarGKSRB22,
author = {Akshat Kumar and
Heath Goodrum and
Ashley Kim and
Carly Stender and
Kirk Roberts and
Elmer V. Bernstam},
title = {Closing the loop: automatically identifying abnormal imaging results
in scanned documents},
journal = {J. Am. Medical Informatics Assoc.},
volume = {29},
number = {5},
pages = {831--840},
year = {2022},
url = {https://doi.org/10.1093/jamia/ocac007},
doi = {10.1093/JAMIA/OCAC007},
timestamp = {Wed, 27 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/KumarGKSRB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/BruceFKRS22,
author = {Chrystal D. Bruce and
Patricia M. Flatt and
Sarah R. Kirk and
Elizabeth Roberts{-}Kirchhoff and
Hala G. Schepmann},
title = {The Value of Peer Mentoring Networks for Developing Leaders and Inspiring
Change},
journal = {J. Chem. Inf. Model.},
volume = {62},
number = {24},
pages = {6292--6296},
year = {2022},
url = {https://doi.org/10.1021/acs.jcim.2c00155},
doi = {10.1021/ACS.JCIM.2C00155},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/BruceFKRS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/DattaKLNCFR22,
author = {Surabhi Datta and
Tasneem Kaochar and
Hio Cheng Lam and
Nelly Nwosu and
Alice Z. Chuang and
Robert M. Feldman and
Kirk Roberts},
title = {Eye-SpatialNet: Spatial Information Extraction from Ophthalmology
Notes},
booktitle = {{AMIA} 2022, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 5-9, 2022},
publisher = {{AMIA}},
year = {2022},
url = {https://knowledge.amia.org/76677-amia-1.4637602/f008-1.4640715/f008-1.4640716/754-1.4641569/1046-1.4641566},
timestamp = {Wed, 17 Apr 2024 11:46:45 +0200},
biburl = {https://dblp.org/rec/conf/amia/DattaKLNCFR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SoniR22,
author = {Sarvesh Soni and
Kirk Roberts},
title = {Toward a Neural Semantic Parsing System for {EHR} Question Answering},
booktitle = {{AMIA} 2022, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 5-9, 2022},
publisher = {{AMIA}},
year = {2022},
url = {https://knowledge.amia.org/76677-amia-1.4637602/f006-1.4642154/f006-1.4642155/258-1.4642240/1124-1.4642237},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SoniR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/BardhanCRW22,
author = {Jayetri Bardhan and
Anthony M. Colas and
Kirk Roberts and
Daisy Zhe Wang},
editor = {Nicoletta Calzolari and
Fr{\'{e}}d{\'{e}}ric B{\'{e}}chet and
Philippe Blache and
Khalid Choukri and
Christopher Cieri and
Thierry Declerck and
Sara Goggi and
Hitoshi Isahara and
Bente Maegaard and
Joseph Mariani and
H{\'{e}}l{\`{e}}ne Mazo and
Jan Odijk and
Stelios Piperidis},
title = {DrugEHRQA: {A} Question Answering Dataset on Structured and Unstructured
Electronic Health Records For Medicine Related Queries},
booktitle = {Proceedings of the Thirteenth Language Resources and Evaluation Conference,
{LREC} 2022, Marseille, France, 20-25 June 2022},
pages = {1083--1097},
publisher = {European Language Resources Association},
year = {2022},
url = {https://aclanthology.org/2022.lrec-1.117},
timestamp = {Fri, 08 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/lrec/BardhanCRW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/DattaLPMR22,
author = {Surabhi Datta and
Hio Cheng Lam and
Atieh Pajouhi and
Sunitha Mogalla and
Kirk Roberts},
editor = {Nicoletta Calzolari and
Fr{\'{e}}d{\'{e}}ric B{\'{e}}chet and
Philippe Blache and
Khalid Choukri and
Christopher Cieri and
Thierry Declerck and
Sara Goggi and
Hitoshi Isahara and
Bente Maegaard and
Joseph Mariani and
H{\'{e}}l{\`{e}}ne Mazo and
Jan Odijk and
Stelios Piperidis},
title = {A Cross-document Coreference Dataset for Longitudinal Tracking across
Radiology Reports},
booktitle = {Proceedings of the Thirteenth Language Resources and Evaluation Conference,
{LREC} 2022, Marseille, France, 20-25 June 2022},
pages = {3686--3695},
publisher = {European Language Resources Association},
year = {2022},
url = {https://aclanthology.org/2022.lrec-1.393},
timestamp = {Mon, 10 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/lrec/DattaLPMR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/SoniGPR22,
author = {Sarvesh Soni and
Meghana Gudala and
Atieh Pajouhi and
Kirk Roberts},
editor = {Nicoletta Calzolari and
Fr{\'{e}}d{\'{e}}ric B{\'{e}}chet and
Philippe Blache and
Khalid Choukri and
Christopher Cieri and
Thierry Declerck and
Sara Goggi and
Hitoshi Isahara and
Bente Maegaard and
Joseph Mariani and
H{\'{e}}l{\`{e}}ne Mazo and
Jan Odijk and
Stelios Piperidis},
title = {RadQA: {A} Question Answering Dataset to Improve Comprehension of
Radiology Reports},
booktitle = {Proceedings of the Thirteenth Language Resources and Evaluation Conference,
{LREC} 2022, Marseille, France, 20-25 June 2022},
pages = {6250--6259},
publisher = {European Language Resources Association},
year = {2022},
url = {https://aclanthology.org/2022.lrec-1.672},
timestamp = {Mon, 10 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/lrec/SoniGPR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/RobertsDVBH22,
author = {Kirk Roberts and
Dina Demner{-}Fushman and
Ellen M. Voorhees and
Steven Bedrick and
William R. Hersh},
editor = {Ian Soboroff and
Angela Ellis},
title = {Overview of the {TREC} 2022 Clinical Trials Track},
booktitle = {Proceedings of the Thirty-First Text REtrieval Conference, {TREC}
2022, online, November 15-19, 2022},
series = {{NIST} Special Publication},
volume = {500-338},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2022},
url = {https://trec.nist.gov/pubs/trec31/papers/Overview\_trials.pdf},
timestamp = {Tue, 29 Aug 2023 17:20:28 +0200},
biburl = {https://dblp.org/rec/conf/trec/RobertsDVBH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2205-01290,
author = {Jayetri Bardhan and
Anthony M. Colas and
Kirk Roberts and
Daisy Zhe Wang},
title = {DrugEHRQA: {A} Question Answering Dataset on Structured and Unstructured
Electronic Health Records For Medicine Related Queries},
journal = {CoRR},
volume = {abs/2205.01290},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2205.01290},
doi = {10.48550/ARXIV.2205.01290},
eprinttype = {arXiv},
eprint = {2205.01290},
timestamp = {Fri, 08 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2205-01290.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2208-09554,
author = {James R. Kirk and
Robert E. Wray and
Peter Lindes and
John E. Laird},
title = {Evaluating Diverse Knowledge Sources for Online One-shot Learning
of Novel Tasks},
journal = {CoRR},
volume = {abs/2208.09554},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2208.09554},
doi = {10.48550/ARXIV.2208.09554},
eprinttype = {arXiv},
eprint = {2208.09554},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2208-09554.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2209-07636,
author = {James R. Kirk and
Robert E. Wray and
Peter Lindes and
John E. Laird},
title = {Improving Language Model Prompting in Support of Semi-autonomous Task
Learning},
journal = {CoRR},
volume = {abs/2209.07636},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2209.07636},
doi = {10.48550/ARXIV.2209.07636},
eprinttype = {arXiv},
eprint = {2209.07636},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2209-07636.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2209-09807,
author = {Jonathan C. Roberts and
Benjamin Bach and
Magdalena Boucher and
Fanny Chevalier and
Alexandra Diehl and
Uta Hinrichs and
Samuel Huron and
Andy Kirk and
S{\o}ren Knudsen and
Isabel Meirelles and
Rebecca Noonan and
Laura Pelchmann and
Fateme Rajabiyazdi and
Christina Stoiber},
title = {Reflections and Considerations on Running Creative Visualization Learning
Activities},
journal = {CoRR},
volume = {abs/2209.09807},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2209.09807},
doi = {10.48550/ARXIV.2209.09807},
eprinttype = {arXiv},
eprint = {2209.09807},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2209-09807.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2211-04569,
author = {Sarvesh Soni and
Kirk Roberts},
title = {Toward a Neural Semantic Parsing System for {EHR} Question Answering},
journal = {CoRR},
volume = {abs/2211.04569},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2211.04569},
doi = {10.48550/ARXIV.2211.04569},
eprinttype = {arXiv},
eprint = {2211.04569},
timestamp = {Tue, 15 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2211-04569.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/SoniR21,
author = {Sarvesh Soni and
Kirk Roberts},
title = {An evaluation of two commercial deep learning-based information retrieval
systems for {COVID-19} literature},
journal = {J. Am. Medical Informatics Assoc.},
volume = {28},
number = {1},
pages = {132--137},
year = {2021},
url = {https://doi.org/10.1093/jamia/ocaa271},
doi = {10.1093/JAMIA/OCAA271},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/SoniR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/RobertsABDLSVWH21,
author = {Kirk Roberts and
Tasmeer Alam and
Steven Bedrick and
Dina Demner{-}Fushman and
Kyle Lo and
Ian Soboroff and
Ellen M. Voorhees and
Lucy Lu Wang and
William R. Hersh},
title = {Searching for scientific evidence in a pandemic: An overview of {TREC-COVID}},
journal = {J. Biomed. Informatics},
volume = {121},
pages = {103865},
year = {2021},
url = {https://doi.org/10.1016/j.jbi.2021.103865},
doi = {10.1016/J.JBI.2021.103865},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/RobertsABDLSVWH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/SiBR21,
author = {Yuqi Si and
Elmer V. Bernstam and
Kirk Roberts},
title = {Generalized and transferable patient language representation for phenotyping
with limited data},
journal = {J. Biomed. Informatics},
volume = {116},
pages = {103726},
year = {2021},
url = {https://doi.org/10.1016/j.jbi.2021.103726},
doi = {10.1016/J.JBI.2021.103726},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/SiBR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/SiDLJMWZR21,
author = {Yuqi Si and
Jingcheng Du and
Zhao Li and
Xiaoqian Jiang and
Timothy A. Miller and
Fei Wang and
W. Jim Zheng and
Kirk Roberts},
title = {Deep representation learning of patient data from Electronic Health
Records {(EHR):} {A} systematic review},
journal = {J. Biomed. Informatics},
volume = {115},
pages = {103671},
year = {2021},
url = {https://doi.org/10.1016/j.jbi.2020.103671},
doi = {10.1016/J.JBI.2020.103671},
timestamp = {Wed, 01 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/SiDLJMWZR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/NgantchaARVWT21,
author = {Patricia Ngantcha and
Muhammad Tuan Amith and
Kirk Roberts and
John A. Valenza and
Muhammad Walji and
Cui Tao},
editor = {Yufei Huang and
Lukasz A. Kurgan and
Feng Luo and
Xiaohua Hu and
Yidong Chen and
Edward R. Dougherty and
Andrzej Kloczkowski and
Yaohang Li},
title = {Dental EHR-infused Persona Ontologies to Enrich Dental Dialogue Interaction
of Agents},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2021, Houston, TX, USA, December 9-12, 2021},
pages = {1818--1825},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/BIBM52615.2021.9669748},
doi = {10.1109/BIBM52615.2021.9669748},
timestamp = {Mon, 27 May 2024 13:23:22 +0200},
biburl = {https://dblp.org/rec/conf/bibm/NgantchaARVWT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hci/NgantchaATR21,
author = {Patricia Ngantcha and
Muhammad Amith and
Cui Tao and
Kirk Roberts},
editor = {Vincent G. Duffy},
title = {Patient-Provider Communication Training Models for Interactive Speech
Devices},
booktitle = {Digital Human Modeling and Applications in Health, Safety, Ergonomics
and Risk Management. Human Body, Motion and Behavior - 12th International
Conference, {DHM} 2021, Held as Part of the 23rd {HCI} International
Conference, {HCII} 2021, Virtual Event, July 24-29, 2021, Proceedings,
Part {I}},
series = {Lecture Notes in Computer Science},
volume = {12777},
pages = {250--268},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-77817-0\_19},
doi = {10.1007/978-3-030-77817-0\_19},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/hci/NgantchaATR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sigir/VoorheesR21,
author = {Ellen M. Voorhees and
Kirk Roberts},
editor = {Fernando Diaz and
Chirag Shah and
Torsten Suel and
Pablo Castells and
Rosie Jones and
Tetsuya Sakai},
title = {On the Quality of the {TREC-COVID} {IR} Test Collections},
booktitle = {{SIGIR} '21: The 44th International {ACM} {SIGIR} Conference on Research
and Development in Information Retrieval, Virtual Event, Canada, July
11-15, 2021},
pages = {2422--2428},
publisher = {{ACM}},
year = {2021},
url = {https://doi.org/10.1145/3404835.3463244},
doi = {10.1145/3404835.3463244},
timestamp = {Thu, 15 Jul 2021 11:04:31 +0200},
biburl = {https://dblp.org/rec/conf/sigir/VoorheesR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2103-00482,
author = {Yuqi Si and
Elmer V. Bernstam and
Kirk Roberts},
title = {Generalized and Transferable Patient Language Representation for Phenotyping
with Limited Data},
journal = {CoRR},
volume = {abs/2103.00482},
year = {2021},
url = {https://arxiv.org/abs/2103.00482},
eprinttype = {arXiv},
eprint = {2103.00482},
timestamp = {Thu, 04 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2103-00482.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2104-08444,
author = {Yuqi Si and
Kirk Roberts},
title = {Hierarchical Transformer Networks for Longitudinal Clinical Document
Classification},
journal = {CoRR},
volume = {abs/2104.08444},
year = {2021},
url = {https://arxiv.org/abs/2104.08444},
eprinttype = {arXiv},
eprint = {2104.08444},
timestamp = {Mon, 26 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2104-08444.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2104-09632,
author = {Kirk Roberts and
Tasmeer Alam and
Steven Bedrick and
Dina Demner{-}Fushman and
Kyle Lo and
Ian Soboroff and
Ellen M. Voorhees and
Lucy Lu Wang and
William R. Hersh},
title = {Searching for Scientific Evidence in a Pandemic: An Overview of {TREC-COVID}},
journal = {CoRR},
volume = {abs/2104.09632},
year = {2021},
url = {https://arxiv.org/abs/2104.09632},
eprinttype = {arXiv},
eprint = {2104.09632},
timestamp = {Mon, 26 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2104-09632.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2109-08270,
author = {Robert E. Wray III and
James R. Kirk and
John E. Laird},
title = {Language Models as a Knowledge Source for Cognitive Agents},
journal = {CoRR},
volume = {abs/2109.08270},
year = {2021},
url = {https://arxiv.org/abs/2109.08270},
eprinttype = {arXiv},
eprint = {2109.08270},
timestamp = {Wed, 22 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2109-08270.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2110-01617,
author = {Joshua Robertson and
Paul Kirkland and
Juan Arturo Alanis and
Matej Hejda and
Juli{\'{a}}n Bueno and
Gaetano Di Caterina and
Antonio Hurtado},
title = {Ultrafast Neuromorphic Photonic Image Processing with a {VCSEL} Neuron},
journal = {CoRR},
volume = {abs/2110.01617},
year = {2021},
url = {https://arxiv.org/abs/2110.01617},
eprinttype = {arXiv},
eprint = {2110.01617},
timestamp = {Fri, 08 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2110-01617.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2110-11864,
author = {Enshuo Hsu and
Ioannis Malagaris and
Yong{-}Fang Kuo and
Rizwana Sultana and
Kirk Roberts},
title = {Deep learning-based {NLP} Data Pipeline for {EHR} Scanned Document
Information Extraction},
journal = {CoRR},
volume = {abs/2110.11864},
year = {2021},
url = {https://arxiv.org/abs/2110.11864},
eprinttype = {arXiv},
eprint = {2110.11864},
timestamp = {Thu, 28 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2110-11864.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/PatraRW20,
author = {Braja Gopal Patra and
Kirk Roberts and
Hulin Wu},
title = {A content-based dataset recommendation system for researchers - a
case study on Gene Expression Omnibus {(GEO)} repository},
journal = {Database J. Biol. Databases Curation},
volume = {2020},
year = {2020},
url = {https://doi.org/10.1093/database/baaa064},
doi = {10.1093/DATABASE/BAAA064},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/PatraRW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/PatraSDWMWZRWY20,
author = {Braja Gopal Patra and
Babak Soltanalizadeh and
Nan Deng and
Leqing Wu and
Vahed Maroufy and
Canglin Wu and
W. Jim Zheng and
Kirk Roberts and
Hulin Wu and
Ashraf Yaseen},
title = {An informatics research platform to make public gene expression time-course
datasets reusable for more scientific discoveries},
journal = {Database J. Biol. Databases Curation},
volume = {2020},
year = {2020},
url = {https://doi.org/10.1093/database/baaa074},
doi = {10.1093/DATABASE/BAAA074},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/PatraSDWMWZRWY20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/GoodrumRB20,
author = {Heath Goodrum and
Kirk Roberts and
Elmer V. Bernstam},
title = {Automatic classification of scanned electronic health record documents},
journal = {Int. J. Medical Informatics},
volume = {144},
pages = {104302},
year = {2020},
url = {https://doi.org/10.1016/j.ijmedinf.2020.104302},
doi = {10.1016/J.IJMEDINF.2020.104302},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijmi/GoodrumRB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/RobertsABDLSVWH20,
author = {Kirk Roberts and
Tasmeer Alam and
Steven Bedrick and
Dina Demner{-}Fushman and
Kyle Lo and
Ian Soboroff and
Ellen M. Voorhees and
Lucy Lu Wang and
William R. Hersh},
title = {{TREC-COVID:} rationale and structure of an information retrieval
shared task for {COVID-19}},
journal = {J. Am. Medical Informatics Assoc.},
volume = {27},
number = {9},
pages = {1431--1436},
year = {2020},
url = {https://doi.org/10.1093/jamia/ocaa091},
doi = {10.1093/JAMIA/OCAA091},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/RobertsABDLSVWH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/WuRDDJSSWWXZX20,
author = {Stephen Wu and
Kirk Roberts and
Surabhi Datta and
Jingcheng Du and
Zongcheng Ji and
Yuqi Si and
Sarvesh Soni and
Qiong Wang and
Qiang Wei and
Yang Xiang and
Bo Zhao and
Hua Xu},
title = {Deep learning in clinical natural language processing: a methodical
review},
journal = {J. Am. Medical Informatics Assoc.},
volume = {27},
number = {3},
pages = {457--470},
year = {2020},
url = {https://doi.org/10.1093/jamia/ocz200},
doi = {10.1093/JAMIA/OCZ200},
timestamp = {Sat, 27 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/WuRDDJSSWWXZX20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/DattaSRSDR20,
author = {Surabhi Datta and
Yuqi Si and
Laritza Rodriguez and
Sonya E. Shooshan and
Dina Demner{-}Fushman and
Kirk Roberts},
title = {Understanding spatial language in radiology: Representation framework,
annotation, and spatial relation extraction from chest X-ray reports
using deep learning},
journal = {J. Biomed. Informatics},
volume = {108},
pages = {103473},
year = {2020},
url = {https://doi.org/10.1016/j.jbi.2020.103473},
doi = {10.1016/J.JBI.2020.103473},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/DattaSRSDR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/PatraMSDZRW20,
author = {Braja Gopal Patra and
Vahed Maroufy and
Babak Soltanalizadeh and
Nan Deng and
W. Jim Zheng and
Kirk Roberts and
Hulin Wu},
title = {A content-based literature recommendation system for datasets to improve
data reusability - {A} case study on Gene Expression Omnibus {(GEO)}
datasets},
journal = {J. Biomed. Informatics},
volume = {104},
pages = {103399},
year = {2020},
url = {https://doi.org/10.1016/j.jbi.2020.103399},
doi = {10.1016/J.JBI.2020.103399},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/PatraMSDZRW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/AmithLCWZXXRT20,
author = {Muhammad Amith and
Rebecca Lin and
Licong Cui and
Dennis Wang and
Anna Zhu and
Grace Xiong and
Hua Xu and
Kirk Roberts and
Cui Tao},
title = {Conversational ontology operator: patient-centric vaccine dialogue
management engine for spoken conversational agents},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {20-S},
number = {4},
pages = {259},
year = {2020},
url = {https://doi.org/10.1186/s12911-020-01267-y},
doi = {10.1186/S12911-020-01267-Y},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/AmithLCWZXXRT20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigir/VoorheesABDHLRS20,
author = {Ellen M. Voorhees and
Tasmeer Alam and
Steven Bedrick and
Dina Demner{-}Fushman and
William R. Hersh and
Kyle Lo and
Kirk Roberts and
Ian Soboroff and
Lucy Lu Wang},
title = {{TREC-COVID:} constructing a pandemic information retrieval test collection},
journal = {{SIGIR} Forum},
volume = {54},
number = {1},
pages = {1:1--1:12},
year = {2020},
url = {https://doi.org/10.1145/3451964.3451965},
doi = {10.1145/3451964.3451965},
timestamp = {Mon, 26 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sigir/VoorheesABDHLRS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/DattaGR20,
author = {Surabhi Datta and
Jordan Godfrey{-}Stovall and
Kirk Roberts},
title = {RadLex Normalization in Radiology Reports},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t003-1.4606204/t003-1.4606205/3413792-1.4606554/3417172-1.4606551},
timestamp = {Wed, 17 Apr 2024 11:47:01 +0200},
biburl = {https://dblp.org/rec/conf/amia/DattaGR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SiDLJMWZR20,
author = {Yuqi Si and
Jingcheng Du and
Zhao Li and
Xiaoqian Jiang and
Timothy A. Miller and
Fei Wang and
W. Jim Zheng and
Kirk Roberts},
title = {Deep Representation Learning of Patient Data from Electronic Health
Records: {A} Systematic Review},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t004-1.4605866/t004-1.4605867/3411611-1.4605940/3410604-1.4605937},
timestamp = {Fri, 19 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SiDLJMWZR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SoniR20,
author = {Sarvesh Soni and
Kirk Roberts},
title = {Patient Cohort Retrieval using Transformer Language Models},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t003-1.4606204/t003-1.4606205/3415163-1.4606299/3417217-1.4606296},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SoniR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/AmithWXRT20,
author = {Muhammad Amith and
Jing Wang and
Grace Xiong and
Kirk Roberts and
Cui Tao},
editor = {Taesung Park and
Young{-}Rae Cho and
Xiaohua Hu and
Illhoi Yoo and
Hyun Goo Woo and
Jianxin Wang and
Julio C. Facelli and
Seungyoon Nam and
Mingon Kang},
title = {A health consumer ontology of fast food information},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2020, Virtual Event, South Korea, December 16-19, 2020},
pages = {1714--1719},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/BIBM49941.2020.9313375},
doi = {10.1109/BIBM49941.2020.9313375},
timestamp = {Thu, 25 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/AmithWXRT20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/coling/SandersGHPGBHR20,
author = {Jordan Sanders and
Meghana Gudala and
Kathleen E. Hamilton and
Nishtha Prasad and
Jordan Godfrey{-}Stovall and
Eduardo Blanco and
Jane Elizabeth Hamilton and
Kirk Roberts},
editor = {Donia Scott and
N{\'{u}}ria Bel and
Chengqing Zong},
title = {Extracting Adherence Information from Electronic Health Records},
booktitle = {Proceedings of the 28th International Conference on Computational
Linguistics, {COLING} 2020, Barcelona, Spain (Online), December 8-13,
2020},
pages = {680--695},
publisher = {International Committee on Computational Linguistics},
year = {2020},
url = {https://doi.org/10.18653/v1/2020.coling-main.60},
doi = {10.18653/V1/2020.COLING-MAIN.60},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/coling/SandersGHPGBHR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/DattaUGKRR20,
author = {Surabhi Datta and
Morgan Ulinski and
Jordan Godfrey{-}Stovall and
Shekhar Khanpara and
Roy Riascos{-}Castaneda and
Kirk Roberts},
editor = {Nicoletta Calzolari and
Fr{\'{e}}d{\'{e}}ric B{\'{e}}chet and
Philippe Blache and
Khalid Choukri and
Christopher Cieri and
Thierry Declerck and
Sara Goggi and
Hitoshi Isahara and
Bente Maegaard and
Joseph Mariani and
H{\'{e}}l{\`{e}}ne Mazo and
Asunci{\'{o}}n Moreno and
Jan Odijk and
Stelios Piperidis},
title = {Rad-SpatialNet: {A} Frame-based Resource for Fine-Grained Spatial
Relations in Radiology Reports},
booktitle = {Proceedings of The 12th Language Resources and Evaluation Conference,
{LREC} 2020, Marseille, France, May 11-16, 2020},
pages = {2251--2260},
publisher = {European Language Resources Association},
year = {2020},
url = {https://aclanthology.org/2020.lrec-1.274/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/lrec/DattaUGKRR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/SoniR20,
author = {Sarvesh Soni and
Kirk Roberts},
editor = {Nicoletta Calzolari and
Fr{\'{e}}d{\'{e}}ric B{\'{e}}chet and
Philippe Blache and
Khalid Choukri and
Christopher Cieri and
Thierry Declerck and
Sara Goggi and
Hitoshi Isahara and
Bente Maegaard and
Joseph Mariani and
H{\'{e}}l{\`{e}}ne Mazo and
Asunci{\'{o}}n Moreno and
Jan Odijk and
Stelios Piperidis},
title = {Evaluation of Dataset Selection for Pre-Training and Fine-Tuning Transformer
Language Models for Clinical Question Answering},
booktitle = {Proceedings of The 12th Language Resources and Evaluation Conference,
{LREC} 2020, Marseille, France, May 11-16, 2020},
pages = {5532--5538},
publisher = {European Language Resources Association},
year = {2020},
url = {https://aclanthology.org/2020.lrec-1.679/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/lrec/SoniR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mie/HollisRBH20,
author = {Kate Fultz Hollis and
Kirk Roberts and
Steven Bedrick and
William R. Hersh},
editor = {Louise Bilenberg Pape{-}Haugaard and
Christian Lovis and
Inge Cort Madsen and
Patrick Weber and
Per Hostrup Nielsen and
Philip Scott},
title = {Addressing the Search Challenges of Precision Medicine with Information
Retrieval Systems and Physician Readers},
booktitle = {Digital Personalized Health and Medicine - Proceedings of {MIE} 2020,
Medical Informatics Europe, Geneva, Switzerland, April 28 - May 1,
2020},
series = {Studies in Health Technology and Informatics},
volume = {270},
pages = {813--817},
publisher = {{IOS} Press},
year = {2020},
url = {https://doi.org/10.3233/SHTI200274},
doi = {10.3233/SHTI200274},
timestamp = {Thu, 04 Apr 2024 17:06:52 +0200},
biburl = {https://dblp.org/rec/conf/mie/HollisRBH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/RobertsDVBH20,
author = {Kirk Roberts and
Dina Demner{-}Fushman and
Ellen M. Voorhees and
Steven Bedrick and
William R. Hersh},
editor = {Ellen M. Voorhees and
Angela Ellis},
title = {Overview of the {TREC} 2020 Precision Medicine Track},
booktitle = {Proceedings of the Twenty-Ninth Text REtrieval Conference, {TREC}
2020, Virtual Event [Gaithersburg, Maryland, USA], November 16-20,
2020},
series = {{NIST} Special Publication},
volume = {1266},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2020},
url = {https://trec.nist.gov/pubs/trec29/papers/OVERVIEW.PM.pdf},
timestamp = {Wed, 07 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/trec/RobertsDVBH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/acl-clinicalnlp/2020,
editor = {Anna Rumshisky and
Kirk Roberts and
Steven Bethard and
Tristan Naumann},
title = {Proceedings of the 3rd Clinical Natural Language Processing Workshop,
ClinicalNLP@EMNLP 2020, Online, November 19, 2020},
publisher = {Association for Computational Linguistics},
year = {2020},
url = {https://aclanthology.org/volumes/2020.clinicalnlp-1/},
isbn = {978-1-952148-74-3},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl-clinicalnlp/2020.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2005-04474,
author = {Ellen M. Voorhees and
Tasmeer Alam and
Steven Bedrick and
Dina Demner{-}Fushman and
William R. Hersh and
Kyle Lo and
Kirk Roberts and
Ian Soboroff and
Lucy Lu Wang},
title = {{TREC-COVID:} Constructing a Pandemic Information Retrieval Test Collection},
journal = {CoRR},
volume = {abs/2005.04474},
year = {2020},
url = {https://arxiv.org/abs/2005.04474},
eprinttype = {arXiv},
eprint = {2005.04474},
timestamp = {Sat, 23 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2005-04474.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2007-03106,
author = {Sarvesh Soni and
Kirk Roberts},
title = {An Evaluation of Two Commercial Deep Learning-Based Information Retrieval
Systems for {COVID-19} Literature},
journal = {CoRR},
volume = {abs/2007.03106},
year = {2020},
url = {https://arxiv.org/abs/2007.03106},
eprinttype = {arXiv},
eprint = {2007.03106},
timestamp = {Mon, 03 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2007-03106.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2009-05121,
author = {Sarvesh Soni and
Kirk Roberts},
title = {Patient Cohort Retrieval using Transformer Language Models},
journal = {CoRR},
volume = {abs/2009.05121},
year = {2020},
url = {https://arxiv.org/abs/2009.05121},
eprinttype = {arXiv},
eprint = {2009.05121},
timestamp = {Thu, 17 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2009-05121.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2009-05128,
author = {Surabhi Datta and
Jordan Godfrey{-}Stovall and
Kirk Roberts},
title = {RadLex Normalization in Radiology Reports},
journal = {CoRR},
volume = {abs/2009.05128},
year = {2020},
url = {https://arxiv.org/abs/2009.05128},
eprinttype = {arXiv},
eprint = {2009.05128},
timestamp = {Thu, 17 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2009-05128.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2010-00074,
author = {Nicholas Greenspan and
Yuqi Si and
Kirk Roberts},
title = {Extracting Concepts for Precision Oncology from the Biomedical Literature},
journal = {CoRR},
volume = {abs/2010.00074},
year = {2020},
url = {https://arxiv.org/abs/2010.00074},
eprinttype = {arXiv},
eprint = {2010.00074},
timestamp = {Mon, 12 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2010-00074.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2010-02809,
author = {Yuqi Si and
Jingcheng Du and
Zhao Li and
Xiaoqian Jiang and
Timothy A. Miller and
Fei Wang and
W. Jim Zheng and
Kirk Roberts},
title = {Deep Representation Learning of Patient Data from Electronic Health
Records {(EHR):} {A} Systematic Review},
journal = {CoRR},
volume = {abs/2010.02809},
year = {2020},
url = {https://arxiv.org/abs/2010.02809},
eprinttype = {arXiv},
eprint = {2010.02809},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2010-02809.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2010-05096,
author = {Surabhi Datta and
Shekhar Khanpara and
Roy F. Riascos and
Kirk Roberts},
title = {Leveraging Spatial Information in Radiology Reports for Ischemic Stroke
Phenotyping},
journal = {CoRR},
volume = {abs/2010.05096},
year = {2020},
url = {https://arxiv.org/abs/2010.05096},
eprinttype = {arXiv},
eprint = {2010.05096},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2010-05096.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AmithRT19,
author = {Muhammad Amith and
Kirk Roberts and
Cui Tao},
title = {Conceiving an application ontology to model patient human papillomavirus
vaccine counseling for dialogue management},
journal = {{BMC} Bioinform.},
volume = {20-S},
number = {21},
pages = {706},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-3193-7},
doi = {10.1186/S12859-019-3193-7},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AmithRT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/SiWXR19,
author = {Yuqi Si and
Jingqi Wang and
Hua Xu and
Kirk E. Roberts},
title = {Enhancing clinical concept extraction with contextual embeddings},
journal = {J. Am. Medical Informatics Assoc.},
volume = {26},
number = {11},
pages = {1297--1304},
year = {2019},
url = {https://doi.org/10.1093/jamia/ocz096},
doi = {10.1093/JAMIA/OCZ096},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/SiWXR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/DattaBR19,
author = {Surabhi Datta and
Elmer V. Bernstam and
Kirk Roberts},
title = {A frame semantic overview of NLP-based information extraction for
cancer-related {EHR} notes},
journal = {J. Biomed. Informatics},
volume = {100},
year = {2019},
url = {https://doi.org/10.1016/j.jbi.2019.103301},
doi = {10.1016/J.JBI.2019.103301},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/DattaBR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/LiRJL19,
author = {Ziyi Li and
Kirk Roberts and
Xiaoqian Jiang and
Qi Long},
title = {Distributed learning from multiple {EHR} databases: Contextual embedding
models for medical events},
journal = {J. Biomed. Informatics},
volume = {92},
year = {2019},
url = {https://doi.org/10.1016/j.jbi.2019.103138},
doi = {10.1016/J.JBI.2019.103138},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/LiRJL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/DattaBR19,
author = {Surabhi Datta and
Elmer V. Bernstam and
Kirk Roberts},
title = {A frame semantic overview of NLP-based information extraction for
cancer-related {EHR} notes: a scoping review},
booktitle = {{AMIA} 2019, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2019},
publisher = {{AMIA}},
year = {2019},
url = {https://knowledge.amia.org/69862-amia-1.4570936/t006-1.4574499/t006-1.4574500/3202534-1.4574774/3202323-1.4574771},
timestamp = {Wed, 17 Apr 2024 11:47:08 +0200},
biburl = {https://dblp.org/rec/conf/amia/DattaBR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/PatraRW19,
author = {Braja Gopal Patra and
Kirk Roberts and
Hulin Wu},
title = {A Dataset Recommendation System for Researchers based on Publications},
booktitle = {{AMIA} 2019, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2019},
publisher = {{AMIA}},
year = {2019},
url = {https://knowledge.amia.org/69862-amia-1.4570936/t007-1.4573510/t007-1.4573511/3203047-1.4573908/3203570-1.4573905},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/PatraRW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SoniGWR19,
author = {Sarvesh Soni and
Meghana Gudala and
Daisy Zhe Wang and
Kirk Roberts},
title = {Using {FHIR} to Construct a Corpus of Clinical Questions Annotated
with Logical Forms and Answers},
booktitle = {{AMIA} 2019, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2019},
publisher = {{AMIA}},
year = {2019},
url = {https://knowledge.amia.org/69862-amia-1.4570936/t005-1.4574828/t005-1.4574829/3202775-1.4574854/3203615-1.4574851},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SoniGWR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WeiJSDWT0TR019,
author = {Qiang Wei and
Zongcheng Ji and
Yuqi Si and
Jingcheng Du and
Jingqi Wang and
Firat Tiryaki and
Stephen Wu and
Cui Tao and
Kirk Roberts and
Hua Xu},
title = {Relation Extraction from Clinical Narratives Using Pre-trained Language
Models},
booktitle = {{AMIA} 2019, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2019},
publisher = {{AMIA}},
year = {2019},
url = {https://knowledge.amia.org/69862-amia-1.4570936/t005-1.4574828/t005-1.4574829/3203466-1.4574845/3203355-1.4574842},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WeiJSDWT0TR019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/AmithCRXT19,
author = {Muhammad Amith and
Licong Cui and
Kirk Roberts and
Hua Xu and
Cui Tao},
editor = {Illhoi Yoo and
Jinbo Bi and
Xiaohua Hu},
title = {Ontology of Consumer Health Vocabulary: providing a formal and interoperable
semantic resource for linking lay language and medical terminology},
booktitle = {2019 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2019, San Diego, CA, USA, November 18-21, 2019},
pages = {1177--1178},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/BIBM47256.2019.8983220},
doi = {10.1109/BIBM47256.2019.8983220},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/AmithCRXT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/GoodrumGMR19,
author = {Heath Goodrum and
Meghana Gudala and
Ankita Misra and
Kirk Roberts},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {Extraction of Lactation Frames from Drug Labels and LactMed},
booktitle = {Proceedings of the 18th BioNLP Workshop and Shared Task, BioNLP@ACL
2019, Florence, Italy, August 1, 2019},
pages = {191--200},
publisher = {Association for Computational Linguistics},
year = {2019},
url = {https://doi.org/10.18653/v1/w19-5020},
doi = {10.18653/V1/W19-5020},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/GoodrumGMR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/SoniR19,
author = {Sarvesh Soni and
Kirk Roberts},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {A Paraphrase Generation System for {EHR} Question Answering},
booktitle = {Proceedings of the 18th BioNLP Workshop and Shared Task, BioNLP@ACL
2019, Florence, Italy, August 1, 2019},
pages = {20--29},
publisher = {Association for Computational Linguistics},
year = {2019},
url = {https://doi.org/10.18653/v1/w19-5003},
doi = {10.18653/V1/W19-5003},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/SoniR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcai/KirkL19,
author = {James R. Kirk and
John E. Laird},
editor = {Sarit Kraus},
title = {Learning Hierarchical Symbolic Representations to Support Interactive
Task Learning and Knowledge Transfer},
booktitle = {Proceedings of the Twenty-Eighth International Joint Conference on
Artificial Intelligence, {IJCAI} 2019, Macao, China, August 10-16,
2019},
pages = {6095--6102},
publisher = {ijcai.org},
year = {2019},
url = {https://doi.org/10.24963/ijcai.2019/844},
doi = {10.24963/IJCAI.2019/844},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ijcai/KirkL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/itch/AmithZCLSSCGBRT19,
author = {Muhammad Amith and
Anna Zhu and
Rachel Cunningham and
Rebecca Lin and
Lara S. Savas and
Laura Shay and
Yong Chen and
Yang Gong and
Julie Boom and
Kirk Roberts and
Cui Tao},
editor = {Francis Y. Lau and
John A. Bartle{-}Clar and
Gerry Bliss and
Elizabeth M. Borycki and
Karen L. Courtney and
Alex Mu{-}Hsing Kuo and
Andr{\'{e}} Kushniruk and
Helen Monkman and
Abdul Vahabpour Roudsari},
title = {Early Usability Assessment of a Conversational Agent for {HPV} Vaccination},
booktitle = {Improving Usability, Safety and Patient Outcomes with Health Information
Technology - From Research to Practice, Information Technology and
Communications in Health Conference, {ITCH} 2019, Victoria, BC, Canada,
14-17 February 2019},
series = {Studies in Health Technology and Informatics},
volume = {257},
pages = {17--23},
publisher = {{IOS} Press},
year = {2019},
url = {https://doi.org/10.3233/978-1-61499-951-5-17},
doi = {10.3233/978-1-61499-951-5-17},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/itch/AmithZCLSSCGBRT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/SinghPRCFM19,
author = {Tavleen Singh and
Carlos A. Perez and
Kirk Roberts and
Nathan K. Cobb and
Amy Franklin and
Sahiti Myneni},
editor = {Lucila Ohno{-}Machado and
Brigitte S{\'{e}}roussi},
title = {Characterization of Behavioral Transitions Through Social Media Analysis:
{A} Mixed-Methods Approach},
booktitle = {{MEDINFO} 2019: Health and Wellbeing e-Networks for All - Proceedings
of the 17th World Congress on Medical and Health Informatics, Lyon,
France, 25-30 August 2019},
series = {Studies in Health Technology and Informatics},
volume = {264},
pages = {1228--1232},
publisher = {{IOS} Press},
year = {2019},
url = {https://doi.org/10.3233/SHTI190422},
doi = {10.3233/SHTI190422},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/SinghPRCFM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/AmithLCWZX0RT19,
author = {Muhammad Amith and
Rebecca Lin and
Licong Cui and
Dennis Wang and
Anna Zhu and
Grace Xiong and
Hua Xu and
Kirk Roberts and
Cui Tao},
editor = {Zhe He and
Jiang Bian and
Cui Tao and
Rui Zhang},
title = {An Ontology-Powered Dialogue Engine For Patient Communication of Vaccines},
booktitle = {Proceedings of the 4th International Workshop on Semantics-Powered
Data Mining and Analytics co-located with the 18th International Semantic
Web Conference {(ISWC} 2019), Aukland, New Zealand, October 27, 2019},
series = {{CEUR} Workshop Proceedings},
volume = {2427},
pages = {24--30},
publisher = {CEUR-WS.org},
year = {2019},
url = {https://ceur-ws.org/Vol-2427/SEPDA\_2019\_paper\_14.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:08 +0100},
biburl = {https://dblp.org/rec/conf/semweb/AmithLCWZX0RT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/RobertsDVHBLPM19,
author = {Kirk Roberts and
Dina Demner{-}Fushman and
Ellen M. Voorhees and
William R. Hersh and
Steven Bedrick and
Alexander J. Lazar and
Shubham Pant and
Funda Meric{-}Bernstam},
editor = {Ellen M. Voorhees and
Angela Ellis},
title = {Overview of the {TREC} 2019 Precision Medicine Track},
booktitle = {Proceedings of the Twenty-Eighth Text REtrieval Conference, {TREC}
2019, Gaithersburg, Maryland, USA, November 13-15, 2019},
series = {{NIST} Special Publication},
volume = {1250},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2019},
url = {https://trec.nist.gov/pubs/trec28/papers/OVERVIEW.PM.pdf},
timestamp = {Wed, 03 Feb 2021 08:31:24 +0100},
biburl = {https://dblp.org/rec/conf/trec/RobertsDVHBLPM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1902-08691,
author = {Yuqi Si and
Jingqi Wang and
Hua Xu and
Kirk Roberts},
title = {Enhancing Clinical Concept Extraction with Contextual Embedding},
journal = {CoRR},
volume = {abs/1902.08691},
year = {2019},
url = {http://arxiv.org/abs/1902.08691},
eprinttype = {arXiv},
eprint = {1902.08691},
timestamp = {Tue, 21 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1902-08691.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1904-01655,
author = {Surabhi Datta and
Elmer V. Bernstam and
Kirk Roberts},
title = {A frame semantic overview of NLP-based information extraction for
cancer-related {EHR} notes},
journal = {CoRR},
volume = {abs/1904.01655},
year = {2019},
url = {http://arxiv.org/abs/1904.01655},
eprinttype = {arXiv},
eprint = {1904.01655},
timestamp = {Fri, 26 Apr 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1904-01655.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1908-04485,
author = {Surabhi Datta and
Yuqi Si and
Laritza Rodriguez and
Sonya E. Shooshan and
Dina Demner{-}Fushman and
Kirk Roberts},
title = {Understanding Spatial Language in Radiology: Representation Framework,
Annotation, and Spatial Relation Extraction from Chest X-ray Reports
using Deep Learning},
journal = {CoRR},
volume = {abs/1908.04485},
year = {2019},
url = {http://arxiv.org/abs/1908.04485},
eprinttype = {arXiv},
eprint = {1908.04485},
timestamp = {Mon, 19 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1908-04485.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/itsm/WangCKFLR18,
author = {Yuemiao Wang and
Lei Chen and
David Kirkwood and
Peng Fu and
Jidong Lv and
Clive Roberts},
title = {Hybrid Online Model-Based Testing for Communication-Based Train Control
Systems},
journal = {{IEEE} Intell. Transp. Syst. Mag.},
volume = {10},
number = {3},
pages = {35--47},
year = {2018},
url = {https://doi.org/10.1109/MITS.2018.2842230},
doi = {10.1109/MITS.2018.2842230},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/itsm/WangCKFLR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/Demner-FushmanT18,
author = {Dina Demner{-}Fushman and
Joseph M. Tonning and
Kin Wah Fung and
Phong Do and
Richard D. Boyce and
Kirk Roberts},
title = {Adverse Reactions and Drug-Drug Interaction Extraction tracks at the
Text Analysis Conference {(TAC)}},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t006-1.4263223/t006-1.4263224/2977233-1.4263537/2975809-1.4263534},
timestamp = {Wed, 17 Apr 2024 11:47:15 +0200},
biburl = {https://dblp.org/rec/conf/amia/Demner-FushmanT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RobertsDVHBLP18,
author = {Kirk Roberts and
Dina Demner{-}Fushman and
Ellen M. Voorhees and
William R. Hersh and
Steven Bedrick and
Alexander J. Lazar and
Shubham Pant},
title = {Benchmarking Information Retrieval for Precision Oncology: the {TREC}
Precision Medicine Track},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t006-1.4263223/t006-1.4263224/2976780-1.4263306/2970178-1.4263303},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RobertsDVHBLP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SiR18,
author = {Yuqi Si and
Kirk E. Roberts},
title = {A Frame-Based {NLP} System for Cancer-Related Information Extraction},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t005-1.4263615/t005-1.4263616/2974959-1.4263647/2976556-1.4263644},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SiR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/RobertsSGB18,
author = {Kirk Roberts and
Yuqi Si and
Anshul Gandhi and
Elmer V. Bernstam},
editor = {Nicoletta Calzolari and
Khalid Choukri and
Christopher Cieri and
Thierry Declerck and
Sara Goggi and
K{\^{o}}iti Hasida and
Hitoshi Isahara and
Bente Maegaard and
Joseph Mariani and
H{\'{e}}l{\`{e}}ne Mazo and
Asunci{\'{o}}n Moreno and
Jan Odijk and
Stelios Piperidis and
Takenobu Tokunaga},
title = {A FrameNet for Cancer Information in Clinical Narratives: Schema and
Annotation},
booktitle = {Proceedings of the Eleventh International Conference on Language Resources
and Evaluation, {LREC} 2018, Miyazaki, Japan, May 7-12, 2018},
publisher = {European Language Resources Association {(ELRA)}},
year = {2018},
url = {http://www.lrec-conf.org/proceedings/lrec2018/summaries/37.html},
timestamp = {Mon, 19 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/lrec/RobertsSGB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/RobertsDVHBL18,
author = {Kirk Roberts and
Dina Demner{-}Fushman and
Ellen M. Voorhees and
William R. Hersh and
Steven Bedrick and
Alexander J. Lazar},
editor = {Ellen M. Voorhees and
Angela Ellis},
title = {Overview of the {TREC} 2018 Precision Medicine Track},
booktitle = {Proceedings of the Twenty-Seventh Text REtrieval Conference, {TREC}
2018, Gaithersburg, Maryland, USA, November 14-16, 2018},
series = {{NIST} Special Publication},
volume = {500-331},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2018},
url = {https://trec.nist.gov/pubs/trec27/papers/Overview-PM.pdf},
timestamp = {Wed, 03 Feb 2021 08:31:25 +0100},
biburl = {https://dblp.org/rec/conf/trec/RobertsDVHBL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/CohenRGCPAHDOX17,
author = {Trevor Cohen and
Kirk Roberts and
Anupama E. Gururaj and
Xiaoling Chen and
Saeid Pournejati and
George Alter and
William R. Hersh and
Dina Demner{-}Fushman and
Lucila Ohno{-}Machado and
Hua Xu},
title = {A publicly available benchmark for biomedical dataset retrieval: the
reference standard for the 2016 bioCADDIE dataset retrieval challenge},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax061},
year = {2017},
url = {https://doi.org/10.1093/database/bax061},
doi = {10.1093/DATABASE/BAX061},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/CohenRGCPAHDOX17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/RobertsGCPHDOCX17,
author = {Kirk Roberts and
Anupama E. Gururaj and
Xiaoling Chen and
Saeid Pournejati and
William R. Hersh and
Dina Demner{-}Fushman and
Lucila Ohno{-}Machado and
Trevor Cohen and
Hua Xu},
title = {Information retrieval for biomedical datasets: the 2016 bioCADDIE
dataset retrieval challenge},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax068},
year = {2017},
url = {https://doi.org/10.1093/database/bax068},
doi = {10.1093/DATABASE/BAX068},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/RobertsGCPHDOCX17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/expert/LairdGAFJLSSTTW17,
author = {John E. Laird and
Kevin A. Gluck and
John R. Anderson and
Kenneth D. Forbus and
Odest Chadwicke Jenkins and
Christian Lebiere and
Dario D. Salvucci and
Matthias Scheutz and
Andrea Thomaz and
J. Gregory Trafton and
Robert E. Wray and
Shiwali Mohan and
James R. Kirk},
title = {Interactive Task Learning},
journal = {{IEEE} Intell. Syst.},
volume = {32},
number = {4},
pages = {6--21},
year = {2017},
url = {https://doi.org/10.1109/MIS.2017.3121552},
doi = {10.1109/MIS.2017.3121552},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/expert/LairdGAFJLSSTTW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/RobertsBPDBGHSB17,
author = {Kirk Roberts and
Mary Regina Boland and
Lisiane Pruinelli and
Jina J. Dcruz and
Andrew B. L. Berry and
Mattias Georgsson and
Rebecca Hazen and
Raymond Francis Sarmiento and
Uba Backonja and
Kun{-}Hsing Yu and
Yun Jiang and
Patricia Flatley Brennan},
title = {Biomedical informatics advancing the national health agenda: the {AMIA}
2015 year-in-review in clinical and consumer informatics},
journal = {J. Am. Medical Informatics Assoc.},
volume = {24},
number = {e1},
pages = {e185--e190},
year = {2017},
url = {https://doi.org/10.1093/jamia/ocw103},
doi = {10.1093/JAMIA/OCW103},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/RobertsBPDBGHSB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jasis/DeardorffMRKD17,
author = {Ariel Deardorff and
Kate Masterton and
Kirk Roberts and
Halil Kilicoglu and
Dina Demner{-}Fushman},
title = {A protocol-driven approach to automatically finding authoritative
answers to consumer health questions in online resources},
journal = {J. Assoc. Inf. Sci. Technol.},
volume = {68},
number = {7},
pages = {1724--1736},
year = {2017},
url = {https://doi.org/10.1002/asi.23806},
doi = {10.1002/ASI.23806},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jasis/DeardorffMRKD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/LindesMKL17,
author = {Peter Lindes and
Aaron Mininger and
James R. Kirk and
John E. Laird},
editor = {Mohit Bansal and
Cynthia Matuszek and
Jacob Andreas and
Yoav Artzi and
Yonatan Bisk},
title = {Grounding Language for Interactive Task Learning},
booktitle = {Proceedings of the First Workshop on Language Grounding for Robotics,
RoboNLP@ACL 2017, Vancouver, Canada, August 3, 2017},
pages = {1--9},
publisher = {Association for Computational Linguistics},
year = {2017},
url = {https://doi.org/10.18653/v1/w17-2801},
doi = {10.18653/V1/W17-2801},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/acl/LindesMKL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LeeZRX17,
author = {Hee{-}Jin Lee and
Yaoyun Zhang and
Kirk Roberts and
Hua Xu},
title = {Leveraging existing corpora for de-identification of psychiatric notes
using domain adaptation},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t003-1.4258387/f003-1.4258388/2730760-1.4258662/2731385-1.4258659},
timestamp = {Wed, 17 Apr 2024 11:47:24 +0200},
biburl = {https://dblp.org/rec/conf/amia/LeeZRX17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RobertsGCPCHDOX17,
author = {Kirk Roberts and
Anupama E. Gururaj and
Xiaoling Chen and
Saeid Pournejati and
Trevor Cohen and
William R. Hersh and
Dina Demner{-}Fushman and
Lucila Ohno{-}Machado and
Hua Xu},
title = {Information Retrieval for Biomedical Datasets: The 2016 bioCADDIE
Challenge},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t001-1.4259018/f001-1.4259019/2725954-1.4259134/2731579-1.4259131},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RobertsGCPCHDOX17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RobertsP17,
author = {Kirk Roberts and
Braja Gopal Patra},
title = {A Semantic Parsing Method for Mapping Clinical Questions to Logical
Forms},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t003-1.4258387/f003-1.4258388/2729012-1.4258536/2731640-1.4258533},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RobertsP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/KordjamshidiRMP17,
author = {Parisa Kordjamshidi and
Taher Rahgooy and
Marie{-}Francine Moens and
James Pustejovsky and
Umar Manzoor and
Kirk Roberts},
editor = {Linda Cappellato and
Nicola Ferro and
Lorraine Goeuriot and
Thomas Mandl},
title = {{CLEF} 2017: Multimodal Spatial Role Labeling Task Working Notes},
booktitle = {Working Notes of {CLEF} 2017 - Conference and Labs of the Evaluation
Forum, Dublin, Ireland, September 11-14, 2017},
series = {{CEUR} Workshop Proceedings},
volume = {1866},
publisher = {CEUR-WS.org},
year = {2017},
url = {https://ceur-ws.org/Vol-1866/invited\_paper\_19.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:41 +0100},
biburl = {https://dblp.org/rec/conf/clef/KordjamshidiRMP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/KordjamshidiRMP17a,
author = {Parisa Kordjamshidi and
Taher Rahgooy and
Marie{-}Francine Moens and
James Pustejovsky and
Umar Manzoor and
Kirk Roberts},
editor = {Gareth J. F. Jones and
S{\'{e}}amus Lawless and
Julio Gonzalo and
Liadh Kelly and
Lorraine Goeuriot and
Thomas Mandl and
Linda Cappellato and
Nicola Ferro},
title = {{CLEF} 2017: Multimodal Spatial Role Labeling (mSpRL) Task Overview},
booktitle = {Experimental {IR} Meets Multilinguality, Multimodality, and Interaction
- 8th International Conference of the {CLEF} Association, {CLEF} 2017,
Dublin, Ireland, September 11-14, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10456},
pages = {367--376},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-65813-1\_32},
doi = {10.1007/978-3-319-65813-1\_32},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/clef/KordjamshidiRMP17a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ieaaie/ZhangZXRZX17,
author = {Olivia R. Zhang and
Yaoyun Zhang and
Jun Xu and
Kirk Roberts and
Xiang Y. Zhang and
Hua Xu},
editor = {Salem Benferhat and
Karim Tabia and
Moonis Ali},
title = {Interweaving Domain Knowledge and Unsupervised Learning for Psychiatric
Stressor Extraction from Clinical Notes},
booktitle = {Advances in Artificial Intelligence: From Theory to Practice - 30th
International Conference on Industrial Engineering and Other Applications
of Applied Intelligent Systems, {IEA/AIE} 2017, Arras, France, June
27-30, 2017, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {10351},
pages = {396--406},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-60045-1\_41},
doi = {10.1007/978-3-319-60045-1\_41},
timestamp = {Tue, 14 May 2019 10:00:37 +0200},
biburl = {https://dblp.org/rec/conf/ieaaie/ZhangZXRZX17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/GiancardoRZ17,
author = {Luca Giancardo and
Kirk Roberts and
Zhongming Zhao},
editor = {M. Jorge Cardoso and
Tal Arbel and
Andrew Melbourne and
Hrvoje Bogunovic and
Pim Moeskops and
Xinjian Chen and
Ernst Schwartz and
Mona Kathryn Garvin and
Emma C. Robinson and
Emanuele Trucco and
Michael Ebner and
Yanwu Xu and
Antonios Makropoulos and
Adrien E. Desjardins and
Tom Vercauteren},
title = {Representation Learning for Retinal Vasculature Embeddings},
booktitle = {Fetal, Infant and Ophthalmic Medical Image Analysis - International
Workshop, {FIFI} 2017, and 4th International Workshop, {OMIA} 2017,
Held in Conjunction with {MICCAI} 2017, Qu{\'{e}}bec City, QC,
Canada, September 14, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10554},
pages = {243--250},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67561-9\_28},
doi = {10.1007/978-3-319-67561-9\_28},
timestamp = {Fri, 18 Mar 2022 08:05:49 +0100},
biburl = {https://dblp.org/rec/conf/miccai/GiancardoRZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/RobertsDVHBLP17,
author = {Kirk Roberts and
Dina Demner{-}Fushman and
Ellen M. Voorhees and
William R. Hersh and
Steven Bedrick and
Alexander J. Lazar and
Shubham Pant},
editor = {Ellen M. Voorhees and
Angela Ellis},
title = {Overview of the {TREC} 2017 Precision Medicine Track},
booktitle = {Proceedings of The Twenty-Sixth Text REtrieval Conference, {TREC}
2017, Gaithersburg, Maryland, USA, November 15-17, 2017},
series = {{NIST} Special Publication},
volume = {500-324},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2017},
url = {https://trec.nist.gov/pubs/trec26/papers/Overview-PM.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/RobertsDVHBLP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/tac/RobertsDT17,
author = {Kirk Roberts and
Dina Demner{-}Fushman and
Joseph M. Tonning},
title = {Overview of the {TAC} 2017 Adverse Reaction Extraction from Drug Labels
Track},
booktitle = {Proceedings of the 2017 Text Analysis Conference, {TAC} 2017, Gaithersburg,
Maryland, USA, November 13-14, 2017},
publisher = {{NIST}},
year = {2017},
url = {https://tac.nist.gov/publications/2017/additional.papers/TAC2017.ADR\_overview.proceedings.pdf},
timestamp = {Tue, 20 Aug 2019 13:25:18 +0200},
biburl = {https://dblp.org/rec/conf/tac/RobertsDT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ir/RobertsSDVH16,
author = {Kirk Roberts and
Matthew S. Simpson and
Dina Demner{-}Fushman and
Ellen M. Voorhees and
William R. Hersh},
title = {State-of-the-art in biomedical literature retrieval for clinical cases:
a survey of the {TREC} 2014 {CDS} track},
journal = {Inf. Retr. J.},
volume = {19},
number = {1-2},
pages = {113--148},
year = {2016},
url = {https://doi.org/10.1007/s10791-015-9259-x},
doi = {10.1007/S10791-015-9259-X},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ir/RobertsSDVH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/RobertsD16,
author = {Kirk Roberts and
Dina Demner{-}Fushman},
title = {Interactive use of online health resources: a comparison of consumer
and professional questions},
journal = {J. Am. Medical Informatics Assoc.},
volume = {23},
number = {4},
pages = {802--811},
year = {2016},
url = {https://doi.org/10.1093/jamia/ocw024},
doi = {10.1093/JAMIA/OCW024},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/RobertsD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl-clinicalnlp/Roberts16,
author = {Kirk Roberts},
editor = {Anna Rumshisky and
Kirk Roberts and
Steven Bethard and
Tristan Naumann},
title = {Assessing the Corpus Size vs. Similarity Trade-off for Word Embeddings
in Clinical {NLP}},
booktitle = {Proceedings of the Clinical Natural Language Processing Workshop,
ClinicalNLP@COLING 2016, Osaka, Japan, December 11, 2016},
pages = {54--63},
publisher = {The {COLING} 2016 Organizing Committee},
year = {2016},
url = {https://aclanthology.org/W16-4208/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl-clinicalnlp/Roberts16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MrabetKRD16,
author = {Yassine Mrabet and
Halil Kilicoglu and
Kirk Roberts and
Dina Demner{-}Fushman},
title = {Combining Open-domain and Biomedical Knowledge for Topic Recognition
in Consumer Health Questions},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t004-1.3364525/f004-1.3364526/2496813-1.3364718/2499657-1.3364713},
timestamp = {Wed, 17 Apr 2024 11:47:32 +0200},
biburl = {https://dblp.org/rec/conf/amia/MrabetKRD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RobertsRSD16,
author = {Kirk Roberts and
Laritza M. Rodriguez and
Sonya E. Shooshan and
Dina Demner{-}Fushman},
title = {Resource Classification for Medical Questions},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t004-1.3364525/f004-1.3364526/2498949-1.3364657/2499725-1.3364654},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RobertsRSD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/ShinRLDYS16,
author = {Hoo{-}Chang Shin and
Kirk Roberts and
Le Lu and
Dina Demner{-}Fushman and
Jianhua Yao and
Ronald M. Summers},
title = {Learning to Read Chest X-Rays: Recurrent Neural Cascade Model for
Automated Image Annotation},
booktitle = {2016 {IEEE} Conference on Computer Vision and Pattern Recognition,
{CVPR} 2016, Las Vegas, NV, USA, June 27-30, 2016},
pages = {2497--2506},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/CVPR.2016.274},
doi = {10.1109/CVPR.2016.274},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cvpr/ShinRLDYS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcai/KirkML16,
author = {James R. Kirk and
Aaron Mininger and
John E. Laird},
editor = {Subbarao Kambhampati},
title = {A Demonstration of Interactive Task Learning},
booktitle = {Proceedings of the Twenty-Fifth International Joint Conference on
Artificial Intelligence, {IJCAI} 2016, New York, NY, USA, 9-15 July
2016},
pages = {4248--4249},
publisher = {{IJCAI/AAAI} Press},
year = {2016},
url = {http://www.ijcai.org/Abstract/16/644},
timestamp = {Tue, 20 Aug 2019 16:19:00 +0200},
biburl = {https://dblp.org/rec/conf/ijcai/KirkML16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/KilicogluAMRRSD16,
author = {Halil Kilicoglu and
Asma Ben Abacha and
Yassine Mrabet and
Kirk Roberts and
Laritza Rodriguez and
Sonya E. Shooshan and
Dina Demner{-}Fushman},
editor = {Nicoletta Calzolari and
Khalid Choukri and
Thierry Declerck and
Sara Goggi and
Marko Grobelnik and
Bente Maegaard and
Joseph Mariani and
H{\'{e}}l{\`{e}}ne Mazo and
Asunci{\'{o}}n Moreno and
Jan Odijk and
Stelios Piperidis},
title = {Annotating Named Entities in Consumer Health Questions},
booktitle = {Proceedings of the Tenth International Conference on Language Resources
and Evaluation {LREC} 2016, Portoro{\v{z}}, Slovenia, May 23-28, 2016},
publisher = {European Language Resources Association {(ELRA)}},
year = {2016},
url = {http://www.lrec-conf.org/proceedings/lrec2016/summaries/727.html},
timestamp = {Mon, 19 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/lrec/KilicogluAMRRSD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/RobertsD16,
author = {Kirk Roberts and
Dina Demner{-}Fushman},
editor = {Nicoletta Calzolari and
Khalid Choukri and
Thierry Declerck and
Sara Goggi and
Marko Grobelnik and
Bente Maegaard and
Joseph Mariani and
H{\'{e}}l{\`{e}}ne Mazo and
Asunci{\'{o}}n Moreno and
Jan Odijk and
Stelios Piperidis},
title = {Annotating Logical Forms for {EHR} Questions},
booktitle = {Proceedings of the Tenth International Conference on Language Resources
and Evaluation {LREC} 2016, Portoro{\v{z}}, Slovenia, May 23-28, 2016},
publisher = {European Language Resources Association {(ELRA)}},
year = {2016},
url = {http://www.lrec-conf.org/proceedings/lrec2016/summaries/152.html},
timestamp = {Mon, 19 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/lrec/RobertsD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/RobertsDVH16,
author = {Kirk Roberts and
Dina Demner{-}Fushman and
Ellen M. Voorhees and
William R. Hersh},
editor = {Ellen M. Voorhees and
Angela Ellis},
title = {Overview of the {TREC} 2016 Clinical Decision Support Track},
booktitle = {Proceedings of The Twenty-Fifth Text REtrieval Conference, {TREC}
2016, Gaithersburg, Maryland, USA, November 15-18, 2016},
series = {{NIST} Special Publication},
volume = {500-321},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2016},
url = {http://trec.nist.gov/pubs/trec25/papers/Overview-CL.pdf},
timestamp = {Wed, 03 Feb 2021 08:31:25 +0100},
biburl = {https://dblp.org/rec/conf/trec/RobertsDVH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/acl-clinicalnlp/2016,
editor = {Anna Rumshisky and
Kirk Roberts and
Steven Bethard and
Tristan Naumann},
title = {Proceedings of the Clinical Natural Language Processing Workshop,
ClinicalNLP@COLING 2016, Osaka, Japan, December 11, 2016},
publisher = {The {COLING} 2016 Organizing Committee},
year = {2016},
url = {https://aclanthology.org/volumes/W16-42/},
isbn = {978-4-87974-710-5},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl-clinicalnlp/2016.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/MohanKL16,
author = {Shiwali Mohan and
James R. Kirk and
John E. Laird},
title = {A Computational Model for Situated Task Learning with Interactive
Instruction},
journal = {CoRR},
volume = {abs/1604.06849},
year = {2016},
url = {http://arxiv.org/abs/1604.06849},
eprinttype = {arXiv},
eprint = {1604.06849},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/MohanKL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/ShinRLDYS16,
author = {Hoo{-}Chang Shin and
Kirk Roberts and
Le Lu and
Dina Demner{-}Fushman and
Jianhua Yao and
Ronald M. Summers},
title = {Learning to Read Chest X-Rays: Recurrent Neural Cascade Model for
Automated Image Annotation},
journal = {CoRR},
volume = {abs/1603.08486},
year = {2016},
url = {http://arxiv.org/abs/1603.08486},
eprinttype = {arXiv},
eprint = {1603.08486},
timestamp = {Fri, 07 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/ShinRLDYS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/RobertsSRAKD15,
author = {Kirk Roberts and
Sonya E. Shooshan and
Laritza Rodriguez and
Swapna Abhyankar and
Halil Kilicoglu and
Dina Demner{-}Fushman},
title = {The role of fine-grained annotations in supervised recognition of
risk factors for heart disease from EHRs},
journal = {J. Biomed. Informatics},
volume = {58},
pages = {S111--S119},
year = {2015},
url = {https://doi.org/10.1016/j.jbi.2015.06.010},
doi = {10.1016/J.JBI.2015.06.010},
timestamp = {Fri, 21 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/RobertsSRAKD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jrtpm/NicholsonKRS15,
author = {Gemma L. Nicholson and
David Kirkwood and
Clive Roberts and
Felix Schmid},
title = {Benchmarking and evaluation of railway operations performance},
journal = {J. Rail Transp. Plan. Manag.},
volume = {5},
number = {4},
pages = {274--293},
year = {2015},
url = {https://doi.org/10.1016/j.jrtpm.2015.11.004},
doi = {10.1016/J.JRTPM.2015.11.004},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jrtpm/NicholsonKRS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaaifs/MohanKML15,
author = {Shiwali Mohan and
James Roberts Kirk and
Aaron Mininger and
John E. Laird},
title = {Agent Requirements for Effective and Efficient Task-Oriented Dialog},
booktitle = {2015 {AAAI} Fall Symposia, Arlington, Virginia, USA, November 12-14,
2015},
pages = {94--99},
publisher = {{AAAI} Press},
year = {2015},
url = {http://www.aaai.org/ocs/index.php/FSS/FSS15/paper/view/11701},
timestamp = {Wed, 14 Nov 2018 16:20:12 +0100},
biburl = {https://dblp.org/rec/conf/aaaifs/MohanKML15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/KilicogluFRD15,
author = {Halil Kilicoglu and
Marcelo Fiszman and
Kirk Roberts and
Dina Demner{-}Fushman},
title = {An Ensemble Method for Spelling Correction in Consumer Health Questions},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t004-1.2745466/f004-1.2745467/2248709-1.2745684/2248743-1.2745681},
timestamp = {Wed, 17 Apr 2024 11:47:40 +0200},
biburl = {https://dblp.org/rec/conf/amia/KilicogluFRD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RobertsRSD15,
author = {Kirk Roberts and
Laritza Rodriguez and
Sonya E. Shooshan and
Dina Demner{-}Fushman},
title = {Automatic Extraction and Post-coordination of Spatial Relations in
Consumer Language},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t004-1.2745466/f004-1.2745467/2248503-1.2745567/2248775-1.2745564},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RobertsRSD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/itsc/WenLKCCR15,
author = {Tao Wen and
Xinnan Lyu and
David Kirkwood and
Lei Chen and
Costas C. Constantinou and
Clive Roberts},
title = {Co-simulation Testing of Data Communication System Supporting {CBTC}},
booktitle = {{IEEE} 18th International Conference on Intelligent Transportation
Systems, {ITSC} 2015, Gran Canaria, Spain, September 15-18, 2015},
pages = {2665--2670},
publisher = {{IEEE}},
year = {2015},
url = {https://doi.org/10.1109/ITSC.2015.428},
doi = {10.1109/ITSC.2015.428},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/itsc/WenLKCCR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/memsys/SuRLCSLN15,
author = {Chun{-}Yi Su and
David Roberts and
Edgar A. Le{\'{o}}n and
Kirk W. Cameron and
Bronis R. de Supinski and
Gabriel H. Loh and
Dimitrios S. Nikolopoulos},
editor = {Bruce L. Jacob},
title = {HpMC: An Energy-aware Management System of Multi-level Memory Architectures},
booktitle = {Proceedings of the 2015 International Symposium on Memory Systems,
{MEMSYS} 2015, Washington DC, DC, USA, October 5-8, 2015},
pages = {167--178},
publisher = {{ACM}},
year = {2015},
url = {https://doi.org/10.1145/2818950.2818974},
doi = {10.1145/2818950.2818974},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/memsys/SuRLCSLN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/RobertsSVH15,
author = {Kirk Roberts and
Matthew S. Simpson and
Ellen M. Voorhees and
William R. Hersh},
editor = {Ellen M. Voorhees and
Angela Ellis},
title = {Overview of the {TREC} 2015 Clinical Decision Support Track},
booktitle = {Proceedings of The Twenty-Fourth Text REtrieval Conference, {TREC}
2015, Gaithersburg, Maryland, USA, November 17-20, 2015},
series = {{NIST} Special Publication},
volume = {500-319},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2015},
url = {http://trec.nist.gov/pubs/trec24/papers/Overview-CL.pdf},
timestamp = {Wed, 03 Feb 2021 08:31:23 +0100},
biburl = {https://dblp.org/rec/conf/trec/RobertsSVH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RobertsCD14,
author = {Kirk Roberts and
Amos Cahan and
Dina Demner{-}Fushman},
title = {Error Propagation in EHRs via Copy/Paste: An Analysis of Relative
Dates},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-005-1.1543914/f-005-1.1543915/a-493-1.1544192/a-494-1.1544189},
timestamp = {Wed, 17 Apr 2024 11:47:48 +0200},
biburl = {https://dblp.org/rec/conf/amia/RobertsCD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RobertsKFD14,
author = {Kirk Roberts and
Halil Kilicoglu and
Marcelo Fiszman and
Dina Demner{-}Fushman},
title = {Automatically Classifying Question Types for Consumer Health Questions},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-004-1.1544972/f-004-1.1544973/a-202-1.1545067/a-203-1.1545064},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RobertsKFD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/RobertsHS14,
author = {Kirk Roberts and
Sanda M. Harabagiu and
Michael A. Skinner},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
Jun'ichi Tsujii},
title = {Structuring Operative Notes using Active Learning},
booktitle = {Proceedings of BioNLP, Baltimore, Maryland, USA, BioNLP@ACL 2014,
June 27-28, 2014},
pages = {68--76},
publisher = {Association for Computational Linguistics},
year = {2014},
url = {https://doi.org/10.3115/v1/W14-3410},
doi = {10.3115/V1/W14-3410},
timestamp = {Fri, 06 Aug 2021 00:41:22 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/RobertsHS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/RobertsKFD14,
author = {Kirk Roberts and
Halil Kilicoglu and
Marcelo Fiszman and
Dina Demner{-}Fushman},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
Jun'ichi Tsujii},
title = {Decomposing Consumer Health Questions},
booktitle = {Proceedings of BioNLP, Baltimore, Maryland, USA, BioNLP@ACL 2014,
June 27-28, 2014},
pages = {29--37},
publisher = {Association for Computational Linguistics},
year = {2014},
url = {https://doi.org/10.3115/v1/W14-3405},
doi = {10.3115/V1/W14-3405},
timestamp = {Mon, 21 Aug 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/RobertsKFD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/RobertsMFKD14,
author = {Kirk Roberts and
Kate Masterton and
Marcelo Fiszman and
Halil Kilicoglu and
Dina Demner{-}Fushman},
editor = {Nicoletta Calzolari and
Khalid Choukri and
Thierry Declerck and
Hrafn Loftsson and
Bente Maegaard and
Joseph Mariani and
Asunci{\'{o}}n Moreno and
Jan Odijk and
Stelios Piperidis},
title = {Annotating Question Decomposition on Complex Medical Questions},
booktitle = {Proceedings of the Ninth International Conference on Language Resources
and Evaluation, {LREC} 2014, Reykjavik, Iceland, May 26-31, 2014},
pages = {2598--2602},
publisher = {European Language Resources Association {(ELRA)}},
year = {2014},
url = {http://www.lrec-conf.org/proceedings/lrec2014/summaries/124.html},
timestamp = {Mon, 19 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/lrec/RobertsMFKD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RobertsonHWGBTFPPF13,
author = {Charles E. Robertson and
J. Kirk Harris and
Brandie D. Wagner and
David Granger and
Kathy Browne and
Beth Tatem and
Leah M. Feazel and
Kristin Park and
Norman R. Pace and
Daniel N. Frank},
title = {Explicet: graphical user interface software for metadata-driven management,
analysis and visualization of microbiome data},
journal = {Bioinform.},
volume = {29},
number = {23},
pages = {3100--3101},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt526},
doi = {10.1093/BIOINFORMATICS/BTT526},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RobertsonHWGBTFPPF13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/RobertsRH13,
author = {Kirk Roberts and
Bryan Rink and
Sanda M. Harabagiu},
title = {A flexible framework for recognizing events, temporal expressions,
and temporal relations in clinical text},
journal = {J. Am. Medical Informatics Assoc.},
volume = {20},
number = {5},
pages = {867--875},
year = {2013},
url = {https://doi.org/10.1136/amiajnl-2013-001619},
doi = {10.1136/AMIAJNL-2013-001619},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/RobertsRH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwcs/RobertsSH13,
author = {Kirk Roberts and
Michael A. Skinner and
Sanda M. Harabagiu},
editor = {Katrin Erk and
Alexander Koller},
title = {Recognizing Spatial Containment Relations between Event Mentions},
booktitle = {Proceedings of the 10th International Conference on Computational
Semantics, {IWCS} 2013, March 19-22, 2013, University of Potsdam,
Potsdam, Germany},
pages = {216--227},
publisher = {The Association for Computer Linguistics},
year = {2013},
url = {https://aclanthology.org/W13-0119/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iwcs/RobertsSH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/RinkRH12,
author = {Bryan Rink and
Kirk Roberts and
Sanda M. Harabagiu},
title = {A supervised framework for resolving coreference in clinical records},
journal = {J. Am. Medical Informatics Assoc.},
volume = {19},
number = {5},
pages = {875--882},
year = {2012},
url = {https://doi.org/10.1136/amiajnl-2012-000810},
doi = {10.1136/AMIAJNL-2012-000810},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/RinkRH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaaifs/MohanMKL12,
author = {Shiwali Mohan and
Aaron Mininger and
James R. Kirk and
John E. Laird},
title = {Learning Grounded Language through Situated Interactive Instruction},
booktitle = {Robots Learning Interactively from Human Teachers, Papers from the
2012 {AAAI} Fall Symposium, Arlington, Virginia, USA, November 2-4,
2012},
series = {{AAAI} Technical Report},
volume = {{FS-12-07}},
publisher = {{AAAI}},
year = {2012},
url = {http://www.aaai.org/ocs/index.php/FSS/FSS12/paper/view/5662},
timestamp = {Tue, 08 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/aaaifs/MohanMKL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RobertsRHSTBBP12,
author = {Kirk Roberts and
Bryan Rink and
Sanda M. Harabagiu and
Richard H. Scheuermann and
Seth M. Toomay and
Travis Browning and
Teresa Bosler and
Ronald M. Peshock},
title = {A Machine Learning Approach for Identifying Anatomical Locations of
Actionable Findings in Radiology Reports},
booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
Chicago, Illinois, USA, November 3-7, 2012},
publisher = {{AMIA}},
year = {2012},
url = {https://knowledge.amia.org/amia-55142-a2012a-1.636547/t-003-1.640625/f-001-1.640626/a-090-1.640963/a-091-1.640960},
timestamp = {Wed, 17 Apr 2024 11:48:03 +0200},
biburl = {https://dblp.org/rec/conf/amia/RobertsRHSTBBP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gis/RobertsH12,
author = {Kirk Roberts and
Sanda M. Harabagiu},
editor = {Isabel F. Cruz and
Craig A. Knoblock and
Peer Kr{\"{o}}ger and
Egemen Tanin and
Peter Widmayer},
title = {Locational relativity and domain constraints in spatial questions},
booktitle = {{SIGSPATIAL} 2012 International Conference on Advances in Geographic
Information Systems (formerly known as GIS), SIGSPATIAL'12, Redondo
Beach, CA, USA, November 7-9, 2012},
pages = {219--228},
publisher = {{ACM}},
year = {2012},
url = {https://doi.org/10.1145/2424321.2424350},
doi = {10.1145/2424321.2424350},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gis/RobertsH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/RobertsGH12,
author = {Kirk Roberts and
Travis R. Goodwin and
Sanda M. Harabagiu},
editor = {Nicoletta Calzolari and
Khalid Choukri and
Thierry Declerck and
Mehmet Ugur Dogan and
Bente Maegaard and
Joseph Mariani and
Jan Odijk and
Stelios Piperidis},
title = {Annotating Spatial Containment Relations Between Events},
booktitle = {Proceedings of the Eighth International Conference on Language Resources
and Evaluation, {LREC} 2012, Istanbul, Turkey, May 23-25, 2012},
pages = {3052--3059},
publisher = {European Language Resources Association {(ELRA)}},
year = {2012},
url = {http://www.lrec-conf.org/proceedings/lrec2012/summaries/1091.html},
timestamp = {Mon, 19 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/lrec/RobertsGH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/RobertsRJGH12,
author = {Kirk Roberts and
Michael A. Roach and
Joseph Johnson and
Josh Guthrie and
Sanda M. Harabagiu},
editor = {Nicoletta Calzolari and
Khalid Choukri and
Thierry Declerck and
Mehmet Ugur Dogan and
Bente Maegaard and
Joseph Mariani and
Jan Odijk and
Stelios Piperidis},
title = {EmpaTweet: Annotating and Detecting Emotions on Twitter},
booktitle = {Proceedings of the Eighth International Conference on Language Resources
and Evaluation, {LREC} 2012, Istanbul, Turkey, May 23-25, 2012},
pages = {3806--3813},
publisher = {European Language Resources Association {(ELRA)}},
year = {2012},
url = {http://www.lrec-conf.org/proceedings/lrec2012/summaries/201.html},
timestamp = {Mon, 19 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/lrec/RobertsRJGH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/GoodwinRRH12,
author = {Travis R. Goodwin and
Bryan Rink and
Kirk Roberts and
Sanda M. Harabagiu},
editor = {Eneko Agirre and
Johan Bos and
Mona T. Diab},
title = {{UTDHLT:} {COPACETIC} System for Choosing Plausible Alternatives},
booktitle = {Proceedings of the 6th International Workshop on Semantic Evaluation,
SemEval@NAACL-HLT 2012, Montr{\'{e}}al, Canada, June 7-8, 2012},
pages = {461--466},
publisher = {The Association for Computer Linguistics},
year = {2012},
url = {https://aclanthology.org/S12-1063/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/semeval/GoodwinRRH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/RobertsH12,
author = {Kirk Roberts and
Sanda M. Harabagiu},
editor = {Eneko Agirre and
Johan Bos and
Mona T. Diab},
title = {UTD-SpRL: {A} Joint Approach to Spatial Role Labeling},
booktitle = {Proceedings of the 6th International Workshop on Semantic Evaluation,
SemEval@NAACL-HLT 2012, Montr{\'{e}}al, Canada, June 7-8, 2012},
pages = {419--424},
publisher = {The Association for Computer Linguistics},
year = {2012},
url = {https://aclanthology.org/S12-1056/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/semeval/RobertsH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/GoodwinRRH12,
author = {Travis R. Goodwin and
Kirk Roberts and
Bryan Rink and
Sanda M. Harabagiu},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Cohort Sherpherd {II:} Verifying Cohort Constraints from Hospital
Visits},
booktitle = {Proceedings of The Twenty-First Text REtrieval Conference, {TREC}
2012, Gaithersburg, Maryland, USA, November 6-9, 2012},
series = {{NIST} Special Publication},
volume = {500-298},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2012},
url = {http://trec.nist.gov/pubs/trec21/papers/UTDHLT.medical.nb.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/GoodwinRRH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijsc/RobertsH11,
author = {Kirk Roberts and
Sanda M. Harabagiu},
title = {Detecting New and Emerging Events in Streaming News Documents},
journal = {Int. J. Semantic Comput.},
volume = {5},
number = {4},
pages = {407--431},
year = {2011},
url = {https://doi.org/10.1142/S1793351X11001316},
doi = {10.1142/S1793351X11001316},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijsc/RobertsH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/RinkHR11,
author = {Bryan Rink and
Sanda M. Harabagiu and
Kirk Roberts},
title = {Automatic extraction of relations between medical concepts in clinical
texts},
journal = {J. Am. Medical Informatics Assoc.},
volume = {18},
number = {5},
pages = {594--600},
year = {2011},
url = {https://doi.org/10.1136/amiajnl-2011-000153},
doi = {10.1136/AMIAJNL-2011-000153},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/RinkHR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/RobertsH11,
author = {Kirk Roberts and
Sanda M. Harabagiu},
title = {A flexible framework for deriving assertions from electronic medical
records},
journal = {J. Am. Medical Informatics Assoc.},
volume = {18},
number = {5},
pages = {568--573},
year = {2011},
url = {https://doi.org/10.1136/amiajnl-2011-000152},
doi = {10.1136/AMIAJNL-2011-000152},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/RobertsH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emnlp/RobertsH11,
author = {Kirk Roberts and
Sanda M. Harabagiu},
title = {Unsupervised Learning of Selectional Restrictions and Detection of
Argument Coercions},
booktitle = {Proceedings of the 2011 Conference on Empirical Methods in Natural
Language Processing, {EMNLP} 2011, 27-31 July 2011, John McIntyre
Conference Centre, Edinburgh, UK, {A} meeting of SIGDAT, a Special
Interest Group of the {ACL}},
pages = {980--990},
publisher = {{ACL}},
year = {2011},
url = {https://aclanthology.org/D11-1091/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/emnlp/RobertsH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semco/RobertsH11,
author = {Kirk Roberts and
Sanda M. Harabagiu},
title = {Detecting New and Emerging Events from Textual Sources},
booktitle = {Proceedings of the 5th {IEEE} International Conference on Semantic
Computing {(ICSC} 2011), Palo Alto, CA, USA, September 18-21, 2011},
pages = {67--74},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/ICSC.2011.60},
doi = {10.1109/ICSC.2011.60},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/semco/RobertsH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/GoodwinRRH11,
author = {Travis R. Goodwin and
Bryan Rink and
Kirk Roberts and
Sanda M. Harabagiu},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Cohort Shepherd: Discoving Cohort Traits from Hospital Visits},
booktitle = {Proceedings of The Twentieth Text REtrieval Conference, {TREC} 2011,
Gaithersburg, Maryland, USA, November 15-18, 2011},
series = {{NIST} Special Publication},
volume = {500-296},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2011},
url = {http://trec.nist.gov/pubs/trec20/papers/UTD\_HLT.medical.update.pdf},
timestamp = {Mon, 19 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/trec/GoodwinRRH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/flairs/RobertsBH10,
author = {Kirk Roberts and
Cosmin Adrian Bejan and
Sanda M. Harabagiu},
editor = {Hans W. Guesgen and
R. Charles Murray},
title = {Toponym Disambiguation Using Events},
booktitle = {Proceedings of the Twenty-Third International Florida Artificial Intelligence
Research Society Conference, May 19-21, 2010, Daytona Beach, Florida,
{USA}},
publisher = {{AAAI} Press},
year = {2010},
url = {http://www.aaai.org/ocs/index.php/FLAIRS/2010/paper/view/1291},
timestamp = {Wed, 26 Oct 2022 08:35:20 +0200},
biburl = {https://dblp.org/rec/conf/flairs/RobertsBH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/NicolaeNR10,
author = {Cristina Nicolae and
Gabriel Nicolae and
Kirk Roberts},
editor = {Nicoletta Calzolari and
Khalid Choukri and
Bente Maegaard and
Joseph Mariani and
Jan Odijk and
Stelios Piperidis and
Mike Rosner and
Daniel Tapias},
title = {{C-3:} Coherence and Coreference Corpus},
booktitle = {Proceedings of the International Conference on Language Resources
and Evaluation, {LREC} 2010, 17-23 May 2010, Valletta, Malta},
publisher = {European Language Resources Association},
year = {2010},
url = {http://www.lrec-conf.org/proceedings/lrec2010/summaries/622.html},
timestamp = {Mon, 19 Aug 2019 15:22:48 +0200},
biburl = {https://dblp.org/rec/conf/lrec/NicolaeNR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/RobertsGBH10,
author = {Kirk Roberts and
Srikanth Gullapalli and
Cosmin Adrian Bejan and
Sanda M. Harabagiu},
editor = {Nicoletta Calzolari and
Khalid Choukri and
Bente Maegaard and
Joseph Mariani and
Jan Odijk and
Stelios Piperidis and
Mike Rosner and
Daniel Tapias},
title = {A Linguistic Resource for Semantic Parsing of Motion Events},
booktitle = {Proceedings of the International Conference on Language Resources
and Evaluation, {LREC} 2010, 17-23 May 2010, Valletta, Malta},
publisher = {European Language Resources Association},
year = {2010},
url = {http://www.lrec-conf.org/proceedings/lrec2010/summaries/941.html},
timestamp = {Mon, 19 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/lrec/RobertsGBH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/RobertsH10,
author = {Kirk Roberts and
Sanda M. Harabagiu},
editor = {Katrin Erk and
Carlo Strapparava},
title = {UTDMet: Combining WordNet and Corpus Data for Argument Coercion Detection},
booktitle = {Proceedings of the 5th International Workshop on Semantic Evaluation,
SemEval@ACL 2010, Uppsala University, Uppsala, Sweden, July 15-16,
2010},
pages = {252--255},
publisher = {The Association for Computer Linguistics},
year = {2010},
url = {https://aclanthology.org/S10-1056/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/semeval/RobertsH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/Roberts09,
author = {Kirk Roberts},
editor = {Chris Callison{-}Burch and
Ido Dagan and
Christopher D. Manning and
Marco Pennacchiotti and
Fabio Massimo Zanzotto},
title = {Building an Annotated Textual Inference Corpus for Motion and Space},
booktitle = {Proceedings of the 2009 Workshop on Applied Textual Inference, TextInfer@ACL
2009, Suntec, Singapore, August 6, 2009},
pages = {48--51},
publisher = {Association for Computational Linguistics},
year = {2009},
url = {https://aclanthology.org/W09-2507/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl/Roberts09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/RobertsH08,
author = {Kirk Roberts and
Andrew Hickl},
title = {Scaling Answer Type Detection to Large Hierarchies},
booktitle = {Proceedings of the International Conference on Language Resources
and Evaluation, {LREC} 2008, 26 May - 1 June 2008, Marrakech, Morocco},
publisher = {European Language Resources Association},
year = {2008},
url = {http://www.lrec-conf.org/proceedings/lrec2008/summaries/384.html},
timestamp = {Mon, 19 Aug 2019 15:22:28 +0200},
biburl = {https://dblp.org/rec/conf/lrec/RobertsH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/HicklRRBJSW07,
author = {Andrew Hickl and
Kirk Roberts and
Bryan Rink and
Jeremy Bensley and
Tobias Jungen and
Ying Shi and
John Williams},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Question Answering with LCC's {CHAUCER-2} at {TREC} 2007},
booktitle = {Proceedings of The Sixteenth Text REtrieval Conference, {TREC} 2007,
Gaithersburg, Maryland, USA, November 5-9, 2007},
series = {{NIST} Special Publication},
volume = {500-274},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2007},
url = {http://trec.nist.gov/pubs/trec16/papers/lcc-hickl.qa.final.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/HicklRRBJSW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/HicklWBRSR06,
author = {Andrew Hickl and
John Williams and
Jeremy Bensley and
Kirk Roberts and
Ying Shi and
Bryan Rink},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Question Answering with LCC's {CHAUCER} at {TREC} 2006},
booktitle = {Proceedings of the Fifteenth Text REtrieval Conference, {TREC} 2006,
Gaithersburg, Maryland, USA, November 14-17, 2006},
series = {{NIST} Special Publication},
volume = {500-272},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2006},
url = {http://trec.nist.gov/pubs/trec15/papers/lcc-harabagiu.qa.final.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/HicklWBRSR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icra/RobertsCKPW99,
author = {Jonathan M. Roberts and
Peter I. Corke and
Robin J. Kirkham and
Fr{\'{e}}d{\'{e}}ric Pennerath and
Graeme J. Winstanley},
title = {A Real-Time Software Architecture for Robotics and Automation},
booktitle = {1999 {IEEE} International Conference on Robotics and Automation, Marriott
Hotel, Renaissance Center, Detroit, Michigan, USA, May 10-15, 1999,
Proceedings},
pages = {1158--1163},
publisher = {{IEEE} Robotics and Automation Society},
year = {1999},
url = {https://doi.org/10.1109/ROBOT.1999.772518},
doi = {10.1109/ROBOT.1999.772518},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icra/RobertsCKPW99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dac/Robertson75,
author = {J. Kirk Robertson},
editor = {Robert B. Hitchcock Sr. and
Donald J. Humcke and
Stephen A. Szygenda},
title = {Computer Aided Design in D. P. {W}},
booktitle = {Proceedings of the 12th Design Automation Conference, {DAC} '75, Boston,
Massachusetts, USA, June 23-25, 1975},
pages = {355--360},
publisher = {{ACM}},
year = {1975},
url = {http://dl.acm.org/citation.cfm?id=809087},
timestamp = {Thu, 01 Mar 2012 19:09:34 +0100},
biburl = {https://dblp.org/rec/conf/dac/Robertson75.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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