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@article{DBLP:journals/bib/HahnPHLMSHVDTL24,
  author       = {Georg Hahn and
                  Dmitry Prokopenko and
                  Julian Hecker and
                  Sharon Marie Lutz and
                  Kristina Mullin and
                  Leinal Sejour and
                  Winston Hide and
                  Ioannis Vlachos and
                  Stacia Desantis and
                  Rudolph E. Tanzi and
                  Christoph Lange},
  title        = {Prediction of disease-free survival for precision medicine using cooperative
                  learning on multi-omic data},
  journal      = {Briefings Bioinform.},
  volume       = {25},
  number       = {4},
  year         = {2024},
  url          = {https://doi.org/10.1093/bib/bbae267},
  doi          = {10.1093/BIB/BBAE267},
  timestamp    = {Sun, 04 Aug 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/HahnPHLMSHVDTL24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/HahnLHPCSWL24,
  author       = {Georg Hahn and
                  Sharon Marie Lutz and
                  Julian Hecker and
                  Dmitry Prokopenko and
                  Michael H. Cho and
                  Edwin K. Silverman and
                  Scott T. Weiss and
                  Christoph Lange},
  title        = {Fast computation of the eigensystem of genomic similarity matrices},
  journal      = {{BMC} Bioinform.},
  volume       = {25},
  number       = {1},
  pages        = {43},
  year         = {2024},
  url          = {https://doi.org/10.1186/s12859-024-05650-8},
  doi          = {10.1186/S12859-024-05650-8},
  timestamp    = {Thu, 01 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/HahnLHPCSWL24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bib/LeeHHLMHBDTLP23,
  author       = {Sanghun Lee and
                  Georg Hahn and
                  Julian Hecker and
                  Sharon Marie Lutz and
                  Kristina Mullin and
                  Winston Hide and
                  Lars Bertram and
                  Dawn L. Demeo and
                  Rudolph E. Tanzi and
                  Christoph Lange and
                  Dmitry Prokopenko},
  title        = {A comparison between similarity matrices for principal component analysis
                  to assess population stratification in sequenced genetic data sets},
  journal      = {Briefings Bioinform.},
  volume       = {24},
  number       = {1},
  year         = {2023},
  url          = {https://doi.org/10.1093/bib/bbac611},
  doi          = {10.1093/BIB/BBAC611},
  timestamp    = {Sat, 25 Feb 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/LeeHHLMHBDTLP23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/HahnLPANHCKBRWL22,
  author       = {Georg Hahn and
                  Sanghun Lee and
                  Dmitry Prokopenko and
                  Jonathan Abraham and
                  Tanya Novak and
                  Julian Hecker and
                  Michael H. Cho and
                  Surender Khurana and
                  Lindsey R. Baden and
                  Adrienne G. Randolph and
                  Scott T. Weiss and
                  Christoph Lange},
  title        = {Unsupervised outlier detection applied to SARS-CoV-2 nucleotide sequences
                  can identify sequences of common variants and other variants of interest},
  journal      = {{BMC} Bioinform.},
  volume       = {23},
  number       = {1},
  pages        = {547},
  year         = {2022},
  url          = {https://doi.org/10.1186/s12859-022-05105-y},
  doi          = {10.1186/S12859-022-05105-Y},
  timestamp    = {Wed, 31 Jan 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/HahnLPANHCKBRWL22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/HeckerTKLLZCWLL21,
  author       = {Julian Hecker and
                  F. William Townes and
                  Priyadarshini Kachroo and
                  Cecelia A. Laurie and
                  Jessica Lasky{-}Su and
                  John Ziniti and
                  Michael H. Cho and
                  Scott T. Weiss and
                  Nan M. Laird and
                  Christoph Lange},
  title        = {A unifying framework for rare variant association testing in family-based
                  designs, including higher criticism approaches, SKATs, and burden
                  tests},
  journal      = {Bioinform.},
  volume       = {36},
  number       = {22-23},
  pages        = {5432--5438},
  year         = {2021},
  url          = {https://doi.org/10.1093/bioinformatics/btaa1055},
  doi          = {10.1093/BIOINFORMATICS/BTAA1055},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HeckerTKLLZCWLL21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/iccabs/HahnLHP019,
  author       = {Georg Hahn and
                  Sharon Marie Lutz and
                  Julian Hecker and
                  Dmitry Prokopenko and
                  Christoph Lange},
  editor       = {Ion I. Mandoiu and
                  T. M. Murali and
                  Giri Narasimhan and
                  Sanguthevar Rajasekaran and
                  Pavel Skums and
                  Alexander Zelikovsky},
  title        = {Local and Global Stratification Analysis in Whole Genome Sequencing
                  {(WGS)} Studies Using LocStra},
  booktitle    = {Computational Advances in Bio and Medical Sciences - 9th International
                  Conference, {ICCABS} 2019, Miami, FL, USA, November 15-17, 2019, Revised
                  Selected Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {12029},
  pages        = {159--170},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://doi.org/10.1007/978-3-030-46165-2\_13},
  doi          = {10.1007/978-3-030-46165-2\_13},
  timestamp    = {Wed, 29 Apr 2020 17:47:18 +0200},
  biburl       = {https://dblp.org/rec/conf/iccabs/HahnLHP019.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/ProkopenkoHSPND16,
  author       = {Dmitry Prokopenko and
                  Julian Hecker and
                  Edwin K. Silverman and
                  Marcello Pagano and
                  Markus M. N{\"{o}}then and
                  Christian Dina and
                  Christoph Lange and
                  Heide Loehlein Fier},
  title        = {Utilizing the Jaccard index to reveal population stratification in
                  sequencing data: a simulation study and an application to the 1000
                  Genomes Project},
  journal      = {Bioinform.},
  volume       = {32},
  number       = {9},
  pages        = {1366--1372},
  year         = {2016},
  url          = {https://doi.org/10.1093/bioinformatics/btv752},
  doi          = {10.1093/BIOINFORMATICS/BTV752},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ProkopenkoHSPND16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jocnet/SouzaRRCOACM16,
  author       = {Andr{\'{e}} L. N. de Souza and
                  Eduardo J. Mayoral Ruiz and
                  Jacklyn D. Reis and
                  Luis H. H. Carvalho and
                  Juliano R. F. Oliveira and
                  Dalton Soares Arantes and
                  Max H. M. Costa and
                  Darli A. A. Mello},
  title        = {Parameter Selection in Optical Networks With Variable-Code-Rate Superchannels},
  journal      = {{JOCN}},
  volume       = {8},
  number       = {7},
  pages        = {A152--A161},
  year         = {2016},
  url          = {https://doi.org/10.1364/jocn.8.00a152},
  doi          = {10.1364/JOCN.8.00A152},
  timestamp    = {Tue, 18 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jocnet/SouzaRRCOACM16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/ofc/ReisCRSRRRCCOO16,
  author       = {Jacklyn D. Reis and
                  Andrea Chiuchiarelli and
                  Sandro M. Rossi and
                  Gabriel J. Suzigan and
                  Stenio M. Ranzini and
                  Valery N. Rozental and
                  Eduardo S. Rosa and
                  Vinicius R. S. Cruz and
                  Luis H. H. Carvalho and
                  Julio C. R. F. Oliveira and
                  Juliano R. F. Oliveira},
  title        = {System validation of polymer-based transmitter optical sub-assembly
                  for 100G/200G modules},
  booktitle    = {Optical Fiber Communications Conference and Exhibition, {OFC} 2016,
                  Anaheim, CA, USA, March 20-24, 2016},
  pages        = {1--3},
  publisher    = {{IEEE}},
  year         = {2016},
  url          = {https://ieeexplore.ieee.org/xpl/freeabs\_all.jsp?arnumber=7537292},
  timestamp    = {Wed, 11 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ofc/ReisCRSRRRCCOO16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jocnet/OliveiraOMJSSSM15,
  author       = {Julio C. R. F. Oliveira and
                  Juliano Oliveira and
                  Eduardo Magalh{\~{a}}es and
                  Joao Januario and
                  Marcos A. Siqueira and
                  Rafael Augusto Scaraficci and
                  Marcos Salvador and
                  Leonardo Mariote and
                  Neil Guerrero Gonz{\'{a}}lez and
                  Luis H. H. Carvalho and
                  Fabian van't Hooft and
                  Giovanni Santos and
                  Miquel Garrich},
  title        = {Toward Terabit Autonomic Optical Networks Based on a Software Defined
                  Adaptive/Cognitive Approach [Invited]},
  journal      = {{JOCN}},
  volume       = {7},
  number       = {3},
  pages        = {A421--A431},
  year         = {2015},
  url          = {https://doi.org/10.1364/jocn.7.00a421},
  doi          = {10.1364/JOCN.7.00A421},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jocnet/OliveiraOMJSSSM15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/ondm/MelloSRDCGOAC15,
  author       = {Darli A. A. Mello and
                  Andr{\'{e}} L. N. de Souza and
                  Jacklyn D. Reis and
                  J{\'{u}}lio C. M. Diniz and
                  Luis H. H. Carvalho and
                  Neil Guerrero Gonz{\'{a}}lez and
                  Juliano R. F. Oliveira and
                  Dalton Soares Arantes and
                  Max H. M. Costa},
  title        = {Parameter selection in optical networks with variable-code-rate transceivers},
  booktitle    = {2015 International Conference on Optical Network Design and Modeling,
                  {ONDM} 2015, Pisa, Italy, May 11-14, 2015},
  pages        = {51--56},
  publisher    = {{IEEE}},
  year         = {2015},
  url          = {https://doi.org/10.1109/ONDM.2015.7127273},
  doi          = {10.1109/ONDM.2015.7127273},
  timestamp    = {Tue, 18 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ondm/MelloSRDCGOAC15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/ecoc/Franciscangelis14,
  author       = {Carolina Franciscangelis and
                  Luis H. H. Carvalho and
                  Jacklyn D. Reis and
                  Victor E. Parahyba and
                  F{\'{a}}bio D. Sim{\~{o}}es and
                  Daniel M. Pataca and
                  Eduardo S. Rosa and
                  Valery N. Rozental and
                  Juliano R. F. Oliveira and
                  Neil Guerrero Gonz{\'{a}}lez and
                  Julio C. R. F. Oliveira},
  title        = {Network survivability field trial over Brazilian legacy optical fiber
                  links through advanced transponder reconfiguration},
  booktitle    = {The European Conference on Optical Communication, {ECOC} 2014, Cannes,
                  France, September 21-25, 2014},
  pages        = {1--3},
  publisher    = {{IEEE}},
  year         = {2014},
  url          = {https://doi.org/10.1109/ECOC.2014.6964025},
  doi          = {10.1109/ECOC.2014.6964025},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ecoc/Franciscangelis14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/ecoc/ZibarCPDDNFEHGO14,
  author       = {Darko Zibar and
                  Luis Henrique Hecker de Carvalho and
                  Molly Piels and
                  Andy Doberstein and
                  J{\'{u}}lio C. M. Diniz and
                  B. Nebendahl and
                  Carolina Franciscangelis and
                  Jos{\'{e}} Estar{\'{a}}n and
                  H. Haisch and
                  Neil Guerrero Gonz{\'{a}}lez and
                  Juliano R. F. Oliveira and
                  Idelfonso Tafur Monroy},
  title        = {Bayesian filtering for phase noise characterization and carrier synchronization
                  of up to 192 Gb/s {PDM} 64-QAM},
  booktitle    = {The European Conference on Optical Communication, {ECOC} 2014, Cannes,
                  France, September 21-25, 2014},
  pages        = {1--3},
  publisher    = {{IEEE}},
  year         = {2014},
  url          = {https://doi.org/10.1109/ECOC.2014.6963844},
  doi          = {10.1109/ECOC.2014.6963844},
  timestamp    = {Tue, 18 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ecoc/ZibarCPDDNFEHGO14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/ofc/OliveiraOSSSMGC14,
  author       = {Julio C. R. F. Oliveira and
                  Juliano Oliveira and
                  Marcos A. Siqueira and
                  Rafael Augusto Scaraficci and
                  Marcos Salvador and
                  Leonardo Mariote and
                  Neil Guerrero Gonz{\'{a}}lez and
                  Luis H. H. Carvalho and
                  Fabian van't Hooft and
                  Giovanni Santos and
                  Eduardo Magalh{\~{a}}es and
                  Joao Januario},
  title        = {Towards software defined autonomic terabit optical networks},
  booktitle    = {Optical Fiber Communications Conference and Exhibition, {OFC} 2014,
                  San Francisco, CA, USA, March 9-13, 2014},
  pages        = {1--3},
  publisher    = {{IEEE}},
  year         = {2014},
  url          = {https://doi.org/10.1364/OFC.2014.M3H.5},
  doi          = {10.1364/OFC.2014.M3H.5},
  timestamp    = {Tue, 09 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ofc/OliveiraOSSSMGC14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/ofc/Oliveira0MMBCHC13,
  author       = {Juliano Oliveira and
                  Antonio Caballero and
                  Eduardo Magalh{\~{a}}es and
                  Uiara Moura and
                  Robert Borkowski and
                  Giovanni Curiel and
                  Alberto T. Hirata and
                  Luis Henrique Hecker de Carvalho and
                  Edson Porto da Silva and
                  Darko Zibar and
                  Jose Maranhao and
                  Idelfonso Tafur Monroy and
                  Julio C. R. F. Oliveira},
  title        = {Demonstration of {EDFA} cognitive gain control via {GMPLS} for mixed
                  modulation formats in heterogeneous optical networks},
  booktitle    = {2013 Optical Fiber Communication Conference and Exposition and the
                  National Fiber Optic Engineers Conference (OFC/NFOEC), Anaheim, CA,
                  USA, March 17-21, 2013},
  pages        = {1--3},
  publisher    = {{IEEE}},
  year         = {2013},
  url          = {http://ieeexplore.ieee.org/xpl/freeabs\_all.jsp?arnumber=6533110},
  timestamp    = {Tue, 09 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ofc/Oliveira0MMBCHC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/isvd/BernhardtFHS09,
  author       = {J{\"{o}}rg Bernhardt and
                  Stefan Funke and
                  Michael Hecker and
                  Juliane Siebourg},
  editor       = {Francois Anton},
  title        = {Visualizing Gene Expression Data via Voronoi Treemaps},
  booktitle    = {Sixth International Symposium on Voronoi Diagrams, {ISVD} 2009, Copenhagen,
                  Denmark, June 23-26, 2009},
  pages        = {233--241},
  publisher    = {{IEEE} Computer Society},
  year         = {2009},
  url          = {https://doi.org/10.1109/ISVD.2009.33},
  doi          = {10.1109/ISVD.2009.33},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/isvd/BernhardtFHS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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