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@article{DBLP:journals/bmcbi/UzunerPSK24,
  author       = {Hamdiye Uzuner and
                  Annette Paschen and
                  Dirk Schadendorf and
                  Johannes K{\"{o}}ster},
  title        = {Orthanq: transparent and uncertainty-aware haplotype quantification
                  with application in HLA-typing},
  journal      = {{BMC} Bioinform.},
  volume       = {25},
  number       = {1},
  pages        = {240},
  year         = {2024},
  url          = {https://doi.org/10.1186/s12859-024-05832-4},
  doi          = {10.1186/S12859-024-05832-4},
  timestamp    = {Mon, 22 Jul 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/UzunerPSK24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HartmannSKLK23,
  author       = {Till Hartmann and
                  Christopher Schr{\"{o}}der and
                  Elias Kuthe and
                  David Laehnemann and
                  Johannes K{\"{o}}ster},
  title        = {Insane in the vembrane: filtering and transforming {VCF/BCF} files},
  journal      = {Bioinform.},
  volume       = {39},
  number       = {1},
  year         = {2023},
  url          = {https://doi.org/10.1093/bioinformatics/btac810},
  doi          = {10.1093/BIOINFORMATICS/BTAC810},
  timestamp    = {Tue, 09 Apr 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HartmannSKLK23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/date/EckerAMHKHDAWMS22,
  author       = {Wolfgang Ecker and
                  Peer Adelt and
                  Wolfgang M{\"{u}}ller and
                  Reinhold Heckmann and
                  Milos Krstic and
                  Vladimir Herdt and
                  Rolf Drechsler and
                  Gerhard Angst and
                  Ralf Wimmer and
                  Andreas Mauderer and
                  Rafael Stahl and
                  Karsten Emrich and
                  Daniel Mueller{-}Gritschneder and
                  Bernd Becker and
                  Philipp Scholl and
                  Eyck Jentzsch and
                  Jan Schlamelcher and
                  Kim Gr{\"{u}}ttner and
                  Paul Palomero Bernardo and
                  Oliver Bringmann and
                  Mihaela Damian and
                  Julian Oppermann and
                  Andreas Koch and
                  J{\"{o}}rg Bormann and
                  Johannes Partzsch and
                  Christian Mayr and
                  Wolfgang Kunz},
  editor       = {Cristiana Bolchini and
                  Ingrid Verbauwhede and
                  Ioana Vatajelu},
  title        = {The Scale4Edge {RISC-V} Ecosystem},
  booktitle    = {2022 Design, Automation {\&} Test in Europe Conference {\&}
                  Exhibition, {DATE} 2022, Antwerp, Belgium, March 14-23, 2022},
  pages        = {808--813},
  publisher    = {{IEEE}},
  year         = {2022},
  url          = {https://doi.org/10.23919/DATE54114.2022.9774593},
  doi          = {10.23919/DATE54114.2022.9774593},
  timestamp    = {Sun, 04 Aug 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/date/EckerAMHKHDAWMS22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/degruyter/22/RahmannSK22,
  author       = {Sven Rahmann and
                  Alexander Schramm and
                  Johannes K{\"{o}}ster},
  editor       = {Katharina Morik and
                  J{\"{o}}rg Rahnenf{\"{u}}hrer and
                  Christian Wietfeld},
  title        = {Cancer Diagnostics and Therapy from Molecular Data},
  booktitle    = {Machine Learning under Resource Constraints - Volume 3: Applications},
  series       = {De Gruyter {STEM}},
  pages        = {43--57},
  publisher    = {De Gruyter},
  year         = {2022},
  url          = {https://doi.org/10.1515/9783110785982-011},
  doi          = {10.1515/9783110785982-011},
  timestamp    = {Tue, 07 May 2024 19:59:15 +0200},
  biburl       = {https://dblp.org/rec/books/degruyter/22/RahmannSK22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/degruyter/22/StockerSMKKR22,
  author       = {Bianca K. St{\"{o}}cker and
                  Till Sch{\"{a}}fer and
                  Petra Mutzel and
                  Johannes K{\"{o}}ster and
                  Nils M. Kriege and
                  Sven Rahmann},
  editor       = {Katharina Morik and
                  J{\"{o}}rg Rahnenf{\"{u}}hrer and
                  Christian Wietfeld},
  title        = {Protein Complex Similarity},
  booktitle    = {Machine Learning under Resource Constraints - Volume 3: Applications},
  series       = {De Gruyter {STEM}},
  pages        = {85--102},
  publisher    = {De Gruyter},
  year         = {2022},
  url          = {https://doi.org/10.1515/9783110785982-014},
  doi          = {10.1515/9783110785982-014},
  timestamp    = {Fri, 28 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/degruyter/22/StockerSMKKR22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CuiWKLPTHY21,
  author       = {Yingbo Cui and
                  Zihang Wang and
                  Johannes K{\"{o}}ster and
                  Xiangke Liao and
                  Shaoliang Peng and
                  Tao Tang and
                  Chun Huang and
                  Canqun Yang},
  title        = {VISPR-online: a web-based interactive tool to visualize {CRISPR} screening
                  experiments},
  journal      = {{BMC} Bioinform.},
  volume       = {22},
  number       = {1},
  pages        = {344},
  year         = {2021},
  url          = {https://doi.org/10.1186/s12859-021-04275-5},
  doi          = {10.1186/S12859-021-04275-5},
  timestamp    = {Tue, 16 Aug 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/CuiWKLPTHY21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/MolderJLHTSFLTKWHRNK21,
  author       = {Felix M{\"{o}}lder and
                  Kim Philipp Jablonski and
                  Brice Letcher and
                  Michael B. Hall and
                  Christopher Tomkins{-}Tinch and
                  Vanessa V. Sochat and
                  Jan Forster and
                  Soohyun Lee and
                  Sven Twardziok and
                  Alexander Kanitz and
                  Andreas Wilm and
                  Manuel Holtgrewe and
                  Sven Rahmann and
                  Sven Nahnsen and
                  Johannes K{\"{o}}ster},
  title        = {Sustainable data analysis with Snakemake},
  journal      = {F1000Research},
  volume       = {10},
  pages        = {33},
  year         = {2021},
  url          = {https://doi.org/10.12688/f1000research.29032.1},
  doi          = {10.12688/F1000RESEARCH.29032.1},
  timestamp    = {Fri, 21 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/f1000research/MolderJLHTSFLTKWHRNK21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaaijensRKSS19,
  author       = {Jasmijn A. Baaijens and
                  Bastiaan Van der Roest and
                  Johannes K{\"{o}}ster and
                  Leen Stougie and
                  Alexander Sch{\"{o}}nhuth},
  title        = {Full-length de novo viral quasispecies assembly through variation
                  graph construction},
  journal      = {Bioinform.},
  volume       = {35},
  number       = {24},
  pages        = {5086--5094},
  year         = {2019},
  url          = {https://doi.org/10.1093/bioinformatics/btz443},
  doi          = {10.1093/BIOINFORMATICS/BTZ443},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BaaijensRKSS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KosterBL19,
  author       = {Johannes K{\"{o}}ster and
                  Myles Brown and
                  Xiaole Shirley Liu},
  title        = {A Bayesian model for single cell transcript expression analysis on
                  {MERFISH} data},
  journal      = {Bioinform.},
  volume       = {35},
  number       = {6},
  pages        = {995--1001},
  year         = {2019},
  url          = {https://doi.org/10.1093/bioinformatics/bty718},
  doi          = {10.1093/BIOINFORMATICS/BTY718},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KosterBL19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KosterBL19a,
  author       = {Johannes K{\"{o}}ster and
                  Myles Brown and
                  Xiaole Shirley Liu},
  title        = {A Bayesian model for single cell transcript expression analysis on
                  {MERFISH} data},
  journal      = {Bioinform.},
  volume       = {35},
  number       = {13},
  pages        = {2347},
  year         = {2019},
  url          = {https://doi.org/10.1093/bioinformatics/bty857},
  doi          = {10.1093/BIOINFORMATICS/BTY857},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KosterBL19a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iotsms/KlitzkeMLKK19,
  author       = {Lars Klitzke and
                  Johannes Meyer and
                  Tilman Leune and
                  Carsten Koch and
                  Frank K{\"{o}}ster},
  editor       = {Mohammad A. Alsmirat and
                  Yaser Jararweh},
  title        = {DAGMaR: {A} DAG-based Robust Road Membership Estimation Framework
                  for Scenario Mining},
  booktitle    = {Sixth International Conference on Internet of Things: Systems, Management
                  and Security, {IOTSMS} 2019, Granada, Spain, October 22-25, 2019},
  pages        = {358--365},
  publisher    = {{IEEE}},
  year         = {2019},
  url          = {https://doi.org/10.1109/IOTSMS48152.2019.8939213},
  doi          = {10.1109/IOTSMS48152.2019.8939213},
  timestamp    = {Sun, 25 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/iotsms/KlitzkeMLKK19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sisap/StockerSMKKR19,
  author       = {Bianca K. St{\"{o}}cker and
                  Till Sch{\"{a}}fer and
                  Petra Mutzel and
                  Johannes K{\"{o}}ster and
                  Nils M. Kriege and
                  Sven Rahmann},
  editor       = {Giuseppe Amato and
                  Claudio Gennaro and
                  Vincent Oria and
                  Milos Radovanovic},
  title        = {Protein Complex Similarity Based on Weisfeiler-Lehman Labeling},
  booktitle    = {Similarity Search and Applications - 12th International Conference,
                  {SISAP} 2019, Newark, NJ, USA, October 2-4, 2019, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11807},
  pages        = {308--322},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://doi.org/10.1007/978-3-030-32047-8\_27},
  doi          = {10.1007/978-3-030-32047-8\_27},
  timestamp    = {Fri, 18 Nov 2022 17:12:34 +0100},
  biburl       = {https://dblp.org/rec/conf/sisap/StockerSMKKR19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerjpre/LaehnemannKSMHR19,
  author       = {David Laehnemann and
                  Johannes K{\"{o}}ster and
                  Ewa Szczurek and
                  Davis J. McCarthy and
                  Stephanie C. Hicks and
                  Mark D. Robinson and
                  Catalina A. Vallejos and
                  Niko Beerenwinkel and
                  Kieran R. Campbell and
                  Ahmed Mahfouz and
                  Luca Pinello and
                  Pavel Skums and
                  Alexandros Stamatakis and
                  Camille Stephan{-}Otto Attolini and
                  Samuel Aparicio and
                  Jasmijn A. Baaijens and
                  Marleen Balvert and
                  Buys de Barbanson and
                  Antonio Cappuccio and
                  Giacomo Corleone and
                  Bas E. Dutilh and
                  Maria Florescu and
                  Victor Guryev and
                  Rens Holmer and
                  Katharina Jahn and
                  Thamar Jessurun Lobo and
                  Emma M. Keizer and
                  Indu Khatri and
                  Szymon M. Kielbasa and
                  Jan O. Korbel and
                  Alexey M. Kozlov and
                  Tzu{-}Hao Kuo and
                  Boudewijn P. F. Lelieveldt and
                  Ion I. Mandoiu and
                  John C. Marioni and
                  Tobias Marschall and
                  Felix M{\"{o}}lder and
                  Amir Niknejad and
                  Lukasz Raczkowski and
                  Marcel J. T. Reinders and
                  Jeroen de Ridder and
                  Antoine{-}Emmanuel Saliba and
                  Antonios Somarakis and
                  Oliver Stegle and
                  Fabian J. Theis and
                  Huan Yang and
                  Alex Zelikovsky and
                  Alice C. McHardy and
                  Benjamin J. Raphael and
                  Sohrab P. Shah and
                  Alexander Sch{\"{o}}nhuth},
  title        = {12 Grand Challenges in Single-Cell Data Science},
  journal      = {PeerJ Prepr.},
  volume       = {7},
  pages        = {e27885},
  year         = {2019},
  url          = {https://doi.org/10.7287/peerj.preprints.27885v3},
  doi          = {10.7287/PEERJ.PREPRINTS.27885V3},
  timestamp    = {Thu, 09 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/peerjpre/LaehnemannKSMHR19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KosterR18,
  author       = {Johannes K{\"{o}}ster and
                  Sven Rahmann},
  title        = {Snakemake - a scalable bioinformatics workflow engine},
  journal      = {Bioinform.},
  volume       = {34},
  number       = {20},
  pages        = {3600},
  year         = {2018},
  url          = {https://doi.org/10.1093/bioinformatics/bty350},
  doi          = {10.1093/BIOINFORMATICS/BTY350},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KosterR18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KostersLSSKZHLF18,
  author       = {M. K{\"{o}}sters and
                  Johannes Leufken and
                  Stefan Schulze and
                  K. Sugimoto and
                  Joshua Klein and
                  R. P. Zahedi and
                  Michael Hippler and
                  S. A Leidel and
                  Christian Fufezan},
  title        = {pymzML v2.0: introducing a highly compressed and seekable gzip format},
  journal      = {Bioinform.},
  volume       = {34},
  number       = {14},
  pages        = {2513--2514},
  year         = {2018},
  url          = {https://doi.org/10.1093/bioinformatics/bty046},
  doi          = {10.1093/BIOINFORMATICS/BTY046},
  timestamp    = {Thu, 30 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KostersLSSKZHLF18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CornwellVTHKLSL18,
  author       = {MacIntosh Cornwell and
                  Mahesh Vangala and
                  Len Taing and
                  Zachary Herbert and
                  Johannes K{\"{o}}ster and
                  Bo Li and
                  Hanfei Sun and
                  Taiwen Li and
                  Jian Zhang and
                  Xintao Qiu and
                  Matthew Pun and
                  Rinath Jeselsohn and
                  Myles Brown and
                  Xiaole Shirley Liu and
                  Henry W. Long},
  title        = {{VIPER:} Visualization Pipeline for RNA-seq, a Snakemake workflow
                  for efficient and complete RNA-seq analysis},
  journal      = {{BMC} Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {135:1--135:14},
  year         = {2018},
  url          = {https://doi.org/10.1186/s12859-018-2139-9},
  doi          = {10.1186/S12859-018-2139-9},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/CornwellVTHKLSL18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/irc/WienkeWKW18,
  author       = {Johannes Wienke and
                  Dennis Leroy Wigand and
                  Norman K{\"{o}}ster and
                  Sebastian Wrede},
  title        = {Model-Based Performance Testing for Robotics Software Components},
  booktitle    = {Second {IEEE} International Conference on Robotic Computing, {IRC}
                  2018, Laguna Hills, CA, USA, January 31 - February 2, 2018},
  pages        = {25--32},
  publisher    = {{IEEE} Computer Society},
  year         = {2018},
  url          = {https://doi.org/10.1109/IRC.2018.00013},
  doi          = {10.1109/IRC.2018.00013},
  timestamp    = {Thu, 23 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/irc/WienkeWKW18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/schule/BergnerKMMRSS17,
  author       = {Nadine Bergner and
                  Hilde K{\"{o}}ster and
                  Johannes Magenheim and
                  Kathrin M{\"{u}}ller and
                  Ralf Romeike and
                  Ulrik Schroeder and
                  Carsten Schulte},
  editor       = {Ira Diethelm},
  title        = {Zieldimensionen f{\"{u}}r fr{\"{u}}he informatische Bildung
                  im Kindergarten und in der Grundschule},
  booktitle    = {Informatische Bildung zum Verstehen und Gestalten der digitalen Welt,
                  Proceedings der 17. GI-Fachtagung Informatik und Schule, {INFOS} 2017,
                  13.-15. September 2017, Oldenburg},
  series       = {{LNI}},
  volume       = {{P-274}},
  pages        = {53--62},
  year         = {2017},
  url          = {https://dl.gi.de/handle/20.500.12116/4346},
  timestamp    = {Tue, 28 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/schule/BergnerKMMRSS17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Koster16,
  author       = {Johannes K{\"{o}}ster},
  title        = {Rust-Bio: a fast and safe bioinformatics library},
  journal      = {Bioinform.},
  volume       = {32},
  number       = {3},
  pages        = {444--446},
  year         = {2016},
  url          = {https://doi.org/10.1093/bioinformatics/btv573},
  doi          = {10.1093/BIOINFORMATICS/BTV573},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Koster16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaKQHLCCWMLXL16,
  author       = {Jian Ma and
                  Johannes K{\"{o}}ster and
                  Qian Qin and
                  Shengen Hu and
                  Wei Li and
                  Chenhao Chen and
                  Qingyi Cao and
                  Jinzeng Wang and
                  Shenglin Mei and
                  Qi Liu and
                  Han Xu and
                  Xiaole Shirley Liu},
  title        = {{CRISPR-DO} for genome-wide {CRISPR} design and optimization},
  journal      = {Bioinform.},
  volume       = {32},
  number       = {21},
  pages        = {3336--3338},
  year         = {2016},
  url          = {https://doi.org/10.1093/bioinformatics/btw476},
  doi          = {10.1093/BIOINFORMATICS/BTW476},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MaKQHLCCWMLXL16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StockerKR16,
  author       = {Bianca K. St{\"{o}}cker and
                  Johannes K{\"{o}}ster and
                  Sven Rahmann},
  title        = {SimLoRD: Simulation of Long Read Data},
  journal      = {Bioinform.},
  volume       = {32},
  number       = {17},
  pages        = {2704--2706},
  year         = {2016},
  url          = {https://doi.org/10.1093/bioinformatics/btw286},
  doi          = {10.1093/BIOINFORMATICS/BTW286},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/StockerKR16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mbmv/MichelKG15,
  author       = {Matteo Michel and
                  Johannes Koesters and
                  Benedikt Geukes},
  editor       = {Ulrich Heinkel and
                  Daniel Kriesten and
                  Marko R{\"{o}}{\ss}ler},
  title        = {Modulare Verifikation von Non-Mainline Chip-Level Funktionen},
  booktitle    = {Methoden und Beschreibungssprachen zur Modellierung und Verifikation
                  von Schaltungen und Systemen, {MBMV} 2015, Chemnitz, Germany, March
                  3-4, 2015},
  pages        = {14--19},
  publisher    = {S{\"{a}}chsische Landesbibliothek},
  year         = {2015},
  timestamp    = {Sat, 17 Jul 2021 09:02:10 +0200},
  biburl       = {https://dblp.org/rec/conf/mbmv/MichelKG15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/Koster15,
  author       = {Johannes K{\"{o}}ster},
  title        = {Rust-Bio - a fast and safe bioinformatics library},
  journal      = {CoRR},
  volume       = {abs/1509.02796},
  year         = {2015},
  url          = {http://arxiv.org/abs/1509.02796},
  eprinttype    = {arXiv},
  eprint       = {1509.02796},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/Koster15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/basesearch/Koster14,
  author       = {Johannes K{\"{o}}ster},
  title        = {Parallelization, scalability, and reproducibility in next generation
                  sequencing analysis},
  school       = {Dortmund University, Germany},
  year         = {2014},
  url          = {http://hdl.handle.net/2003/33940},
  doi          = {10.17877/DE290R-7242},
  timestamp    = {Wed, 28 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/phd/basesearch/Koster14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dac/KoestersG14,
  author       = {Johannes Koesters and
                  Alex Goryachev},
  title        = {Verification of Non-Mainline Functions in Todays Processor Chips},
  booktitle    = {The 51st Annual Design Automation Conference 2014, {DAC} '14, San
                  Francisco, CA, USA, June 1-5, 2014},
  pages        = {1:1--1:3},
  publisher    = {{ACM}},
  year         = {2014},
  url          = {https://doi.org/10.1145/2593069.2596693},
  doi          = {10.1145/2593069.2596693},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/dac/KoestersG14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/KosterR14,
  author       = {Johannes K{\"{o}}ster and
                  Sven Rahmann},
  title        = {Massively parallel read mapping on GPUs with {PEANUT}},
  journal      = {CoRR},
  volume       = {abs/1403.1706},
  year         = {2014},
  url          = {http://arxiv.org/abs/1403.1706},
  eprinttype    = {arXiv},
  eprint       = {1403.1706},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/KosterR14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KosterR12,
  author       = {Johannes K{\"{o}}ster and
                  Sven Rahmann},
  title        = {Snakemake - a scalable bioinformatics workflow engine},
  journal      = {Bioinform.},
  volume       = {28},
  number       = {19},
  pages        = {2520--2522},
  year         = {2012},
  url          = {https://doi.org/10.1093/bioinformatics/bts480},
  doi          = {10.1093/BIOINFORMATICS/BTS480},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KosterR12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/KosterR12,
  author       = {Johannes K{\"{o}}ster and
                  Sven Rahmann},
  editor       = {Sebastian B{\"{o}}cker and
                  Franziska Hufsky and
                  Kerstin Scheubert and
                  Jana Schleicher and
                  Stefan Schuster},
  title        = {Building and Documenting Workflows with Python-Based Snakemake},
  booktitle    = {German Conference on Bioinformatics 2012, {GCB} 2012, Jena, Germany,
                  September 20-22, 2012},
  series       = {OASIcs},
  volume       = {26},
  pages        = {49--56},
  publisher    = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
  year         = {2012},
  url          = {https://doi.org/10.4230/OASIcs.GCB.2012.49},
  doi          = {10.4230/OASICS.GCB.2012.49},
  timestamp    = {Tue, 15 Feb 2022 09:40:04 +0100},
  biburl       = {https://dblp.org/rec/conf/gcb/KosterR12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mbmv/JaschkeWK06,
  author       = {Christoph J{\"{a}}schke and
                  Ralf Winkelmann and
                  Johannes K{\"{o}}sters},
  editor       = {Bernd Straube and
                  Martin Freibothe},
  title        = {Control Register Specification and Verification in Complex Systems},
  booktitle    = {Methoden und Beschreibungssprachen zur Modellierung und Verifikation
                  von Schaltungen und Systemen (MBMV), Dresden, Germany, February 20-22,
                  2006},
  pages        = {349--358},
  publisher    = {Fraunhofer Institut f{\"{u}}r Integrierte Schaltungen},
  year         = {2006},
  timestamp    = {Thu, 28 Jun 2012 09:12:11 +0200},
  biburl       = {https://dblp.org/rec/conf/mbmv/JaschkeWK06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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