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@article{DBLP:journals/bmcbi/Martinez-Seidel21,
  author       = {Federico Martinez{-}Seidel and
                  Yin{-}Chen Hsieh and
                  Dirk Walther and
                  Joachim Kopka and
                  Alexandre Augusto Pereira Firmino},
  title        = {COSNet\({}_{\mbox{i}}\): ComplexOme-Structural Network Interpreter
                  used to study spatial enrichment in metazoan ribosomes},
  journal      = {{BMC} Bioinform.},
  volume       = {22},
  number       = {1},
  pages        = {605},
  year         = {2021},
  url          = {https://doi.org/10.1186/s12859-021-04510-z},
  doi          = {10.1186/S12859-021-04510-Z},
  timestamp    = {Sun, 04 Aug 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/Martinez-Seidel21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcsb/BeisserGKFSHDKDM12,
  author       = {Daniela Beisser and
                  Markus A. Grohme and
                  Joachim Kopka and
                  Marcus Frohme and
                  Ralph O. Schill and
                  Steffen Hengherr and
                  Thomas Dandekar and
                  Gunnar W. Klau and
                  Marcus T. Dittrich and
                  Tobias M{\"{u}}ller},
  title        = {Integrated pathway modules using time-course metabolic profiles and
                  {EST} data from Milnesium tardigradum},
  journal      = {{BMC} Syst. Biol.},
  volume       = {6},
  pages        = {72},
  year         = {2012},
  url          = {https://doi.org/10.1186/1752-0509-6-72},
  doi          = {10.1186/1752-0509-6-72},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcsb/BeisserGKFSHDKDM12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/LuedemannSEK08,
  author       = {Alexander L{\"{u}}demann and
                  Katrin Strassburg and
                  Alexander Erban and
                  Joachim Kopka},
  title        = {TagFinder for the quantitative analysis of gas chromatography - mass
                  spectrometry (GC-MS)-based metabolite profiling experiments},
  journal      = {Bioinform.},
  volume       = {24},
  number       = {5},
  pages        = {732--737},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn023},
  doi          = {10.1093/BIOINFORMATICS/BTN023},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LuedemannSEK08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/KopkaSKBUBDWGSWFS05,
  author       = {Joachim Kopka and
                  Nicolas Schauer and
                  Stephan Krueger and
                  Claudia Birkemeyer and
                  Bj{\"{o}}rn Usadel and
                  Eveline Bergm{\"{u}}ller and
                  Peter D{\"{o}}rmann and
                  Wolfram Weckwerth and
                  Yves Gibon and
                  Mark Stitt and
                  Lothar Willmitzer and
                  Alisdair R. Fernie and
                  Dirk Steinhauser},
  title        = {GMD@CSB.DB: the Golm Metabolome Database},
  journal      = {Bioinform.},
  volume       = {21},
  number       = {8},
  pages        = {1635--1638},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti236},
  doi          = {10.1093/BIOINFORMATICS/BTI236},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KopkaSKBUBDWGSWFS05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/ScholzKGKS05,
  author       = {Matthias Scholz and
                  Fatma Kaplan and
                  Charles L. Guy and
                  Joachim Kopka and
                  Joachim Selbig},
  title        = {Non-linear {PCA:} a missing data approach},
  journal      = {Bioinform.},
  volume       = {21},
  number       = {20},
  pages        = {3887--3895},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti634},
  doi          = {10.1093/BIOINFORMATICS/BTI634},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ScholzKGKS05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/RautengartenSBSSKA05,
  author       = {Carsten Rautengarten and
                  Dirk Steinhauser and
                  Dirk B{\"{u}}ssis and
                  Annick Stintzi and
                  Andreas Schaller and
                  Joachim Kopka and
                  Thomas Altmann},
  title        = {Inferring Hypotheses on Functional Relationships of Genes: Analysis
                  of the \emph{Arabidopsis thaliana} Subtilase Gene Family},
  journal      = {PLoS Comput. Biol.},
  volume       = {1},
  number       = {4},
  year         = {2005},
  url          = {https://doi.org/10.1371/journal.pcbi.0010040},
  doi          = {10.1371/JOURNAL.PCBI.0010040},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ploscb/RautengartenSBSSKA05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/LudemannWSK04,
  author       = {Alexander L{\"{u}}demann and
                  Daniel Weicht and
                  Joachim Selbig and
                  Joachim Kopka},
  title        = {PaVESy: Pathway Visualization and Editing System},
  journal      = {Bioinform.},
  volume       = {20},
  number       = {16},
  pages        = {2841--2844},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth278},
  doi          = {10.1093/BIOINFORMATICS/BTH278},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LudemannWSK04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/SteinhauserJLSK04,
  author       = {Dirk Steinhauser and
                  Bj{\"{o}}rn H. Junker and
                  Alexander L{\"{u}}demann and
                  Joachim Selbig and
                  Joachim Kopka},
  title        = {Hypothesis-driven approach to predict transcriptional units from gene
                  expression data},
  journal      = {Bioinform.},
  volume       = {20},
  number       = {12},
  pages        = {1928--1939},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth182},
  doi          = {10.1093/BIOINFORMATICS/BTH182},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SteinhauserJLSK04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/SteinhauserULTK04,
  author       = {Dirk Steinhauser and
                  Bj{\"{o}}rn Usadel and
                  Alexander L{\"{u}}demann and
                  Oliver Thimm and
                  Joachim Kopka},
  title        = {{CSB.DB:} a comprehensive systems-biology database},
  journal      = {Bioinform.},
  volume       = {20},
  number       = {18},
  pages        = {3647--3651},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth398},
  doi          = {10.1093/BIOINFORMATICS/BTH398},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SteinhauserULTK04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}