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@article{DBLP:journals/bioinformatics/CotetAKKSMKKPMGMGHHSDDKS23,
  author       = {Tudor{-}Stefan Cotet and
                  Andreas Agrafiotis and
                  Victor Kreiner and
                  Raphael Kuhn and
                  Danielle Shlesinger and
                  Marcos Manero{-}Carranza and
                  Keywan Khodaverdi and
                  Evgenios Kladis and
                  Aurora Desideri Perea and
                  Dylan Maassen{-}Veeters and
                  Wiona Gl{\"{a}}nzer and
                  Sol{\`{e}}ne Massery and
                  Lorenzo Guerci and
                  Kai{-}Lin Hong and
                  Jiami Han and
                  Kostas Stiklioraitis and
                  Vittoria Martinolli D'arcy and
                  Raphael Dizerens and
                  Samuel Kilchenmann and
                  Lucas Stalder and
                  Leon Nissen and
                  Basil Vogelsanger and
                  Stine Anzb{\"{o}}ck and
                  Daria Laslo and
                  Sophie Bakker and
                  Melinda Kondorosy and
                  Marco Venerito and
                  Alejandro Sanz Garc{\'{\i}}a and
                  Isabelle Feller and
                  Annette Oxenius and
                  Sai T. Reddy and
                  Alexander Yermanos},
  title        = {ePlatypus: an ecosystem for computational analysis of immunogenomics
                  data},
  journal      = {Bioinform.},
  volume       = {39},
  number       = {9},
  year         = {2023},
  url          = {https://doi.org/10.1093/bioinformatics/btad553},
  doi          = {10.1093/BIOINFORMATICS/BTAD553},
  timestamp    = {Sun, 06 Oct 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/CotetAKKSMKKPMGMGHHSDDKS23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/frai/BukkuriAD21,
  author       = {Anuraag Bukkuri and
                  Noemi Andor and
                  Isabel K. Darcy},
  title        = {Applications of Topological Data Analysis in Oncology},
  journal      = {Frontiers Artif. Intell.},
  volume       = {4},
  pages        = {659037},
  year         = {2021},
  url          = {https://doi.org/10.3389/frai.2021.659037},
  doi          = {10.3389/FRAI.2021.659037},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/frai/BukkuriAD21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/epjds/IgnacioD19,
  author       = {Paul Samuel Ignacio and
                  Isabel K. Darcy},
  title        = {Tracing patterns and shapes in remittance and migration networks via
                  persistent homology},
  journal      = {{EPJ} Data Sci.},
  volume       = {8},
  number       = {1},
  pages        = {1:1--1:25},
  year         = {2019},
  url          = {https://doi.org/10.1140/epjds/s13688-018-0179-z},
  doi          = {10.1140/EPJDS/S13688-018-0179-Z},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/epjds/IgnacioD19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:series/ncs/DarcyLS14,
  author       = {Isabel K. Darcy and
                  Stephen D. Levene and
                  Robert G. Scharein},
  editor       = {Natasa Jonoska and
                  Masahico Saito},
  title        = {Introduction to {DNA} Topology},
  booktitle    = {Discrete and Topological Models in Molecular Biology},
  series       = {Natural Computing Series},
  pages        = {327--345},
  publisher    = {Springer},
  year         = {2014},
  url          = {https://doi.org/10.1007/978-3-642-40193-0\_15},
  doi          = {10.1007/978-3-642-40193-0\_15},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/series/ncs/DarcyLS14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jphonetics/DarcyK12,
  author       = {Isabelle Darcy and
                  Franziska Kr{\"{u}}ger},
  title        = {Vowel perception and production in Turkish children acquiring {L2}
                  German},
  journal      = {J. Phonetics},
  volume       = {40},
  number       = {4},
  pages        = {568--581},
  year         = {2012},
  url          = {https://doi.org/10.1016/j.wocn.2012.05.001},
  doi          = {10.1016/J.WOCN.2012.05.001},
  timestamp    = {Fri, 30 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jphonetics/DarcyK12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/cma/Darcy08,
  author       = {Isabel K. Darcy},
  title        = {Modeling protein-DNA complexes with tangles},
  journal      = {Comput. Math. Appl.},
  volume       = {55},
  number       = {5},
  pages        = {924--937},
  year         = {2008},
  url          = {https://doi.org/10.1016/j.camwa.2006.12.099},
  doi          = {10.1016/J.CAMWA.2006.12.099},
  timestamp    = {Thu, 11 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/cma/Darcy08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/DarcyS06,
  author       = {Isabel K. Darcy and
                  Robert G. Scharein},
  title        = {TopoICE-R: 3D visualization modeling the topology of {DNA} recombination},
  journal      = {Bioinform.},
  volume       = {22},
  number       = {14},
  pages        = {1790--1791},
  year         = {2006},
  url          = {https://doi.org/10.1093/bioinformatics/btl164},
  doi          = {10.1093/BIOINFORMATICS/BTL164},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DarcyS06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/DarcyCDMMMNPST06,
  author       = {Isabel K. Darcy and
                  Jeff Chang and
                  Nathan Druivenga and
                  Colin McKinney and
                  Ram K. Medikonduri and
                  Stacy Mills and
                  Junalyn Navarra{-}Madsen and
                  Arun Ponnusamy and
                  Jesse Sweet and
                  Travis B. Thompson},
  title        = {Coloring the Mu transpososome},
  journal      = {{BMC} Bioinform.},
  volume       = {7},
  pages        = {435},
  year         = {2006},
  url          = {https://doi.org/10.1186/1471-2105-7-435},
  doi          = {10.1186/1471-2105-7-435},
  timestamp    = {Sat, 23 Dec 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/DarcyCDMMMNPST06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}