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@article{DBLP:journals/csur/PatoBC24,
author = {Matilde Pato and
M{\'{a}}rcia Barros and
Francisco M. Couto},
title = {Survey on Recommender Systems for Biomedical Items in Life and Health
Sciences},
journal = {{ACM} Comput. Surv.},
volume = {56},
number = {6},
pages = {149:1--149:32},
year = {2024},
url = {https://doi.org/10.1145/3639047},
doi = {10.1145/3639047},
timestamp = {Sat, 04 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/csur/PatoBC24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/AnayaFC24,
author = {Christopher Anaya and
Maria Fernandes and
Francisco M. Couto},
editor = {Guglielmo Faggioli and
Nicola Ferro and
Petra Galusc{\'{a}}kov{\'{a}} and
Alba Garc{\'{\i}}a Seco de Herrera},
title = {{LLM} Fine-Tuning With Biomedical Open-Source Data},
booktitle = {Working Notes of the Conference and Labs of the Evaluation Forum {(CLEF}
2024), Grenoble, France, 9-12 September, 2024},
series = {{CEUR} Workshop Proceedings},
volume = {3740},
pages = {68--77},
publisher = {CEUR-WS.org},
year = {2024},
url = {https://ceur-ws.org/Vol-3740/paper-06.pdf},
timestamp = {Wed, 21 Aug 2024 22:46:00 +0200},
biburl = {https://dblp.org/rec/conf/clef/AnayaFC24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cui/MeoliNFSND24,
author = {Leina Meoli and
Francisco Nunes and
Beatriz F{\'{e}}lix and
Joana Couto da Silva and
Xolani Ntinga and
Melissa Densmore},
editor = {Mateusz Dubiel and
Luis A. Leiva and
Johanne Trippas and
Joel E. Fischer and
Ilaria Torre},
title = {A Not So Chatty "Chatbot": Co-designing to support First-Time Parents
in South Africa and Portugal},
booktitle = {{ACM} Conversational User Interfaces 2024, {CUI} 2024, Luxembourg,
July 8-10, 2024},
pages = {30},
publisher = {{ACM}},
year = {2024},
url = {https://doi.org/10.1145/3640794.3665571},
doi = {10.1145/3640794.3665571},
timestamp = {Fri, 19 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cui/MeoliNFSND24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2407-06292,
author = {Pedro Ruas and
Fernando Gallego Donoso and
Francisco J. Veredas and
Francisco M. Couto},
title = {Hybrid X-Linker: Automated Data Generation and Extreme Multi-label
Ranking for Biomedical Entity Linking},
journal = {CoRR},
volume = {abs/2407.06292},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2407.06292},
doi = {10.48550/ARXIV.2407.06292},
eprinttype = {arXiv},
eprint = {2407.06292},
timestamp = {Wed, 02 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2407-06292.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ac/FernandesDC23,
author = {Maria Fernandes and
J{\'{e}}r{\'{e}}mie Decouchant and
Francisco M. Couto},
title = {Chapter Two - Security, privacy, and trust management in {DNA} computing},
journal = {Adv. Comput.},
volume = {129},
pages = {39--81},
year = {2023},
url = {https://doi.org/10.1016/bs.adcom.2022.08.009},
doi = {10.1016/BS.ADCOM.2022.08.009},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ac/FernandesDC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SousaC23,
author = {Diana F. Sousa and
Francisco M. Couto},
title = {{K-RET:} knowledgeable biomedical relation extraction system},
journal = {Bioinform.},
volume = {39},
number = {4},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad174},
doi = {10.1093/BIOINFORMATICS/BTAD174},
timestamp = {Sat, 27 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SousaC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AsifMLKC23,
author = {Muhammad Asif and
Hugo F. M. C. Martiniano and
Andre Lamurias and
Samina Kausar and
Francisco M. Couto},
title = {{DGH-GO:} dissecting the genetic heterogeneity of complex diseases
using gene ontology},
journal = {{BMC} Bioinform.},
volume = {24},
number = {1},
pages = {171},
year = {2023},
url = {https://doi.org/10.1186/s12859-023-05290-4},
doi = {10.1186/S12859-023-05290-4},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AsifMLKC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sensors/CoutoVPFMPMMCS23,
author = {Ana G. B. Couto and
M{\'{a}}rio Augusto Pires Vaz and
Liliana Pinho and
Jos{\'{e}} F{\'{e}}lix and
Juliana Moreira and
Francisco Pinho and
In{\^{e}}s Albuquerque Mesquita and
Ant{\'{o}}nio Mesquita Montes and
Carlos Crasto and
Andreia S. P. Sousa},
title = {Repeatability and Temporal Consistency of Lower Limb Biomechanical
Variables Expressing Interlimb Coordination during the Double-Support
Phase in People with and without Stroke Sequelae},
journal = {Sensors},
volume = {23},
number = {5},
pages = {2526},
year = {2023},
url = {https://doi.org/10.3390/s23052526},
doi = {10.3390/S23052526},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sensors/CoutoVPFMPMMCS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/africhi/NunesSFMWBVLHNT23,
author = {Francisco Nunes and
Joana Couto da Silva and
Beatriz F{\'{e}}lix and
Ricardo Melo and
Heike Winschiers{-}Theophilus and
Naveen Bagalkot and
Nervo Verdezoto and
Shaimaa Lazem and
Alastair van Heerden and
Thulani Ngubane and
Sarina Till and
Melissa Densmore},
editor = {Nobert Jere and
Omowunmi E. Isafiade and
Abiodun Ogunyemi and
Obinna Anya and
Aderonke Busayo Sakpere and
Dharm Singh Jat},
title = {African Co-Design: Past, Present, and Emerging},
booktitle = {Proceedings of the 4th African Human Computer Interaction Conference,
AfriCHI 2023, East London, South Africa, 27 November 2023- 1 December
2023},
pages = {316--318},
publisher = {{ACM}},
year = {2023},
url = {https://doi.org/10.1145/3628096.3629080},
doi = {10.1145/3628096.3629080},
timestamp = {Sat, 10 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/africhi/NunesSFMWBVLHNT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/ConceicaoSSC23,
author = {Sofia I R. Concei{\c{c}}{\~{a}}o and
Diana F. Sousa and
Pedro Silvestre and
Francisco M. Couto},
editor = {Atul Kr. Ojha and
A. Seza Dogru{\"{o}}z and
Giovanni Da San Martino and
Harish Tayyar Madabushi and
Ritesh Kumar and
Elisa Sartori},
title = {lasigeBioTM at SemEval-2023 Task 7: Improving Natural Language Inference
Baseline Systems with Domain Ontologies},
booktitle = {Proceedings of the The 17th International Workshop on Semantic Evaluation,
SemEval@ACL 2023, Toronto, Canada, 13-14 July 2023},
pages = {10--15},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.semeval-1.2},
doi = {10.18653/V1/2023.SEMEVAL-1.2},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/semeval/ConceicaoSSC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2307-06007,
author = {Mojgan Hashemian and
Marta Couto and
Samuel Mascarenhas and
Ana Paiva and
Pedro A. Santos and
Rui Prada},
title = {Building Persuasive Robots with Social Power Strategies},
journal = {CoRR},
volume = {abs/2307.06007},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2307.06007},
doi = {10.48550/ARXIV.2307.06007},
eprinttype = {arXiv},
eprint = {2307.06007},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2307-06007.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2308-05609,
author = {Pedro Ruas and
Diana F. Sousa and
Andr{\'{e}} Neves and
Carlos Cruz and
Francisco M. Couto},
title = {{LASIGE} and {UNICAGE} solution to the {NASA} LitCoin {NLP} Competition},
journal = {CoRR},
volume = {abs/2308.05609},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2308.05609},
doi = {10.48550/ARXIV.2308.05609},
eprinttype = {arXiv},
eprint = {2308.05609},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2308-05609.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/firai/BarakaCM0V22,
author = {Kim Baraka and
Marta Couto and
Francisco S. Melo and
Ana Paiva and
Manuela Veloso},
title = {"Sequencing Matters": Investigating Suitable Action Sequences in Robot-Assisted
Autism Therapy},
journal = {Frontiers Robotics {AI}},
volume = {9},
pages = {784249},
year = {2022},
url = {https://doi.org/10.3389/frobt.2022.784249},
doi = {10.3389/FROBT.2022.784249},
timestamp = {Mon, 14 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/firai/BarakaCM0V22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/RuasC22,
author = {Pedro Ruas and
Francisco M. Couto},
title = {{NILINKER:} Attention-based approach to {NIL} Entity Linking},
journal = {J. Biomed. Informatics},
volume = {132},
pages = {104137},
year = {2022},
url = {https://doi.org/10.1016/j.jbi.2022.104137},
doi = {10.1016/J.JBI.2022.104137},
timestamp = {Mon, 24 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/RuasC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/SousaC22,
author = {Diana F. Sousa and
Francisco M. Couto},
title = {Biomedical Relation Extraction With Knowledge Graph-Based Recommendations},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {26},
number = {8},
pages = {4207--4217},
year = {2022},
url = {https://doi.org/10.1109/JBHI.2022.3173558},
doi = {10.1109/JBHI.2022.3173558},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/titb/SousaC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/frma/LamuriasJNSC21,
author = {Andre Lamurias and
Sofia Jesus and
Vanessa Neveu and
Reza M. Salek and
Francisco M. Couto},
title = {Information Retrieval Using Machine Learning for Biomarker Curation
in the Exposome-Explorer},
journal = {Frontiers Res. Metrics Anal.},
volume = {6},
pages = {689264},
year = {2021},
url = {https://doi.org/10.3389/frma.2021.689264},
doi = {10.3389/FRMA.2021.689264},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/frma/LamuriasJNSC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/hf/SilvaVCCR21,
author = {Carlos Silva and
Joana Vieira and
Jos{\'{e}} Francisco Creissac Freitas de Campos and
Rui Couto and
Ant{\'{o}}nio Nestor Ribeiro},
title = {Development and Validation of a Descriptive Cognitive Model for Predicting
Usability Issues in a Low-Code Development Platform},
journal = {Hum. Factors},
volume = {63},
number = {6},
year = {2021},
url = {https://doi.org/10.1177/0018720820920429},
doi = {10.1177/0018720820920429},
timestamp = {Wed, 26 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/hf/SilvaVCCR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/BarrosMC21,
author = {M{\'{a}}rcia Barros and
Andr{\'{e}} Moitinho and
Francisco M. Couto},
title = {Hybrid semantic recommender system for chemical compounds in large-scale
datasets},
journal = {J. Cheminformatics},
volume = {13},
number = {1},
pages = {15},
year = {2021},
url = {https://doi.org/10.1186/s13321-021-00495-2},
doi = {10.1186/S13321-021-00495-2},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcheminf/BarrosMC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/scp/PereiraCRRCFS21,
author = {Rui Pereira and
Marco Couto and
Francisco Ribeiro and
Rui Rua and
J{\'{a}}come Cunha and
Jo{\~{a}}o Paulo Fernandes and
Jo{\~{a}}o Saraiva},
title = {Ranking programming languages by energy efficiency},
journal = {Sci. Comput. Program.},
volume = {205},
pages = {102609},
year = {2021},
url = {https://doi.org/10.1016/j.scico.2021.102609},
doi = {10.1016/J.SCICO.2021.102609},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/scp/PereiraCRRCFS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/CamposC21,
author = {Margarida M. Campos and
Francisco M. Couto},
editor = {Guglielmo Faggioli and
Nicola Ferro and
Alexis Joly and
Maria Maistro and
Florina Piroi},
title = {Post-processing BioBERT And Using Voting Methods for Biomedical Question
Answering},
booktitle = {Proceedings of the Working Notes of {CLEF} 2021 - Conference and Labs
of the Evaluation Forum, Bucharest, Romania, September 21st - to -
24th, 2021},
series = {{CEUR} Workshop Proceedings},
volume = {2936},
pages = {258--273},
publisher = {CEUR-WS.org},
year = {2021},
url = {https://ceur-ws.org/Vol-2936/paper-19.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:42 +0100},
biburl = {https://dblp.org/rec/conf/clef/CamposC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/RuasAC21,
author = {Pedro Ruas and
Vitor D. T. Andrade and
Francisco M. Couto},
editor = {Guglielmo Faggioli and
Nicola Ferro and
Alexis Joly and
Maria Maistro and
Florina Piroi},
title = {LASIGE-BioTM at {MESINESP2:} entity linking with semantic similarity
and extreme multi-label classification on Spanish biomedical documents},
booktitle = {Proceedings of the Working Notes of {CLEF} 2021 - Conference and Labs
of the Evaluation Forum, Bucharest, Romania, September 21st - to -
24th, 2021},
series = {{CEUR} Workshop Proceedings},
volume = {2936},
pages = {324--334},
publisher = {CEUR-WS.org},
year = {2021},
url = {https://ceur-ws.org/Vol-2936/paper-24.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/clef/RuasAC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kdd/BarrosCPR21,
author = {M{\'{a}}rcia Barros and
Francisco M. Couto and
Matilde Pato and
Pedro Ruas},
editor = {Feida Zhu and
Beng Chin Ooi and
Chunyan Miao},
title = {Creating Recommender Systems Datasets in Scientific Fields},
booktitle = {{KDD} '21: The 27th {ACM} {SIGKDD} Conference on Knowledge Discovery
and Data Mining, Virtual Event, Singapore, August 14-18, 2021},
pages = {4029--4030},
publisher = {{ACM}},
year = {2021},
url = {https://doi.org/10.1145/3447548.3470805},
doi = {10.1145/3447548.3470805},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/kdd/BarrosCPR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/persuasive/HashemianCMPSP21,
author = {Mojgan Hashemian and
Marta Couto and
Samuel Mascarenhas and
Ana Paiva and
Pedro Alexandre Santos and
Rui Prada},
editor = {Raian Ali and
Birgit Lugrin and
Fred Charles},
title = {Persuasive Social Robot Using Reward Power over Repeated Instances
of Persuasion},
booktitle = {Persuasive Technology - 16th International Conference, {PERSUASIVE}
2021, Virtual Event, April 12-14, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12684},
pages = {63--70},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-79460-6\_6},
doi = {10.1007/978-3-030-79460-6\_6},
timestamp = {Thu, 20 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/persuasive/HashemianCMPSP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/FariaLSCP21,
author = {Daniel Faria and
Beatriz Lima and
Marta Contreiras Silva and
Francisco M. Couto and
Catia Pesquita},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Oktie Hassanzadeh and
C{\'{a}}ssia Trojahn},
title = {{AML} and {AMLC} results for {OAEI} 2021},
booktitle = {Proceedings of the 16th International Workshop on Ontology Matching
co-located with the 20th International Semantic Web Conference {(ISWC}
2021), Virtual conference, October 25, 2021},
series = {{CEUR} Workshop Proceedings},
volume = {3063},
pages = {131--136},
publisher = {CEUR-WS.org},
year = {2021},
url = {https://ceur-ws.org/Vol-3063/oaei21\_paper4.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:04 +0100},
biburl = {https://dblp.org/rec/conf/semweb/FariaLSCP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/smm4h/RuasAC21,
author = {Pedro Ruas and
Vitor D. T. Andrade and
Francisco M. Couto},
editor = {Arjun Magge and
Ari Z. Klein and
Antonio Miranda{-}Escalada and
Mohammed Ali Al{-}garadi and
Ilseyar Alimova and
Zulfat Miftahutdinov and
Eul{\`{a}}lia Farr{\'{e}}{-}Maduell and
Salvador Lima{-}L{\'{o}}pez and
Ivan Flores and
Karen O'Connor and
Davy Weissenbacher and
Elena Tutubalina and
Abeed Sarker and
Juan M. Banda and
Martin Krallinger and
Graciela Gonzalez{-}Hernandez},
title = {Lasige-BioTM at ProfNER: BiLSTM-CRF and contextual Spanish embeddings
for Named Entity Recognition and Tweet Binary Classification},
booktitle = {Proceedings of the Sixth Social Media Mining for Health Workshop and
Shared Task, SMM4H@NAACL-HLT 2021, Mexico City, Mexico, June 10, 2021},
pages = {108--111},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.smm4h-1.21},
doi = {10.18653/V1/2021.SMM4H-1.21},
timestamp = {Sat, 27 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/smm4h/RuasAC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/21/SousaLC21,
author = {Diana F. Sousa and
Andre Lamurias and
Francisco M. Couto},
editor = {Hugh M. Cartwright},
title = {Using Neural Networks for Relation Extraction from Biomedical Literature},
booktitle = {Artificial Neural Networks - Third Edition},
series = {Methods in Molecular Biology},
volume = {2190},
pages = {289--305},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-1-0716-0826-5\_14},
doi = {10.1007/978-1-0716-0826-5\_14},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/sp/21/SousaLC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/aamas/BarakaMCV20,
author = {Kim Baraka and
Francisco S. Melo and
Marta Couto and
Manuela Veloso},
title = {Optimal action sequence generation for assistive agents in fixed horizon
tasks},
journal = {Auton. Agents Multi Agent Syst.},
volume = {34},
number = {2},
pages = {33},
year = {2020},
url = {https://doi.org/10.1007/s10458-020-09458-7},
doi = {10.1007/S10458-020-09458-7},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/aamas/BarakaMCV20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/access/LamuriasSC20,
author = {Andre Lamurias and
Diana F. Sousa and
Francisco M. Couto},
title = {Generating Biomedical Question Answering Corpora From Q{\&}A Forums},
journal = {{IEEE} Access},
volume = {8},
pages = {161042--161051},
year = {2020},
url = {https://doi.org/10.1109/ACCESS.2020.3020868},
doi = {10.1109/ACCESS.2020.3020868},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/access/LamuriasSC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/SousaLC20,
author = {Diana F. Sousa and
Andre Lamurias and
Francisco M. Couto},
title = {A hybrid approach toward biomedical relation extraction training corpora:
combining distant supervision with crowdsourcing},
journal = {Database J. Biol. Databases Curation},
volume = {2020},
year = {2020},
url = {https://doi.org/10.1093/database/baaa104},
doi = {10.1093/DATABASE/BAAA104},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/SousaLC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/RuasLC20,
author = {Pedro Ruas and
Andre Lamurias and
Francisco M. Couto},
title = {Linking chemical and disease entities to ontologies by integrating
PageRank with extracted relations from literature},
journal = {J. Cheminformatics},
volume = {12},
number = {1},
pages = {57},
year = {2020},
url = {https://doi.org/10.1186/s13321-020-00461-4},
doi = {10.1186/S13321-020-00461-4},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcheminf/RuasLC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigir/NunesLBBCCCFFJJ20,
author = {S{\'{e}}rgio Nunes and
Suzanne Little and
Sumit Bhatia and
Ludovico Boratto and
Guillaume Cabanac and
Ricardo Campos and
Francisco M. Couto and
Stefano Faralli and
Ingo Frommholz and
Adam Jatowt and
Al{\'{\i}}pio Jorge and
Mirko Marras and
Philipp Mayr and
Giovanni Stilo},
title = {{ECIR} 2020 workshops: assessing the impact of going online},
journal = {{SIGIR} Forum},
volume = {54},
number = {1},
pages = {7:1--7:11},
year = {2020},
url = {https://doi.org/10.1145/3451964.3451971},
doi = {10.1145/3451964.3451971},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sigir/NunesLBBCCCFFJJ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/FernandesDVCV20,
author = {Maria Fernandes and
J{\'{e}}r{\'{e}}mie Decouchant and
Marcus V{\"{o}}lp and
Francisco M. Couto and
Paulo Jorge Esteves Ver{\'{\i}}ssimo},
title = {DNA-SeAl: Sensitivity Levels to Optimize the Performance of Privacy-Preserving
{DNA} Alignment},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {24},
number = {3},
pages = {907--915},
year = {2020},
url = {https://doi.org/10.1109/JBHI.2019.2914952},
doi = {10.1109/JBHI.2019.2914952},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/titb/FernandesDVCV20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/HeNADTHAZFYAWRZ20,
author = {Jiayuan He and
Dat Quoc Nguyen and
Saber A. Akhondi and
Christian Druckenbrodt and
Camilo Thorne and
Ralph Hoessel and
Zubair Afzal and
Zenan Zhai and
Biaoyan Fang and
Hiyori Yoshikawa and
Ameer Albahem and
Jingqi Wang and
Yuankai Ren and
Zhi Zhang and
Yaoyun Zhang and
Mai Hoang Dao and
Pedro Ruas and
Andre Lamurias and
Francisco M. Couto and
Jenny Copara and
Nona Naderi and
Julien Knafou and
Patrick Ruch and
Douglas Teodoro and
Daniel M. Lowe and
John Mayfield and
Abdullatif K{\"{o}}ksal and
Hilal D{\"{o}}nmez and
Elif {\"{O}}zkirimli and
Arzucan {\"{O}}zg{\"{u}}r and
Darshini Mahendran and
Gabrielle Gurdin and
Nastassja Lewinski and
Christina Tang and
Bridget T. McInnes and
C. S. Malarkodi and
Pattabhi Rk Rao and
Sobha Lalitha Devi and
Lawrence Cavedon and
Trevor Cohn and
Timothy Baldwin and
Karin Verspoor},
editor = {Linda Cappellato and
Carsten Eickhoff and
Nicola Ferro and
Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol},
title = {An Extended Overview of the {CLEF} 2020 ChEMU Lab: Information Extraction
of Chemical Reactions from Patents},
booktitle = {Working Notes of {CLEF} 2020 - Conference and Labs of the Evaluation
Forum, Thessaloniki, Greece, September 22-25, 2020},
series = {{CEUR} Workshop Proceedings},
volume = {2696},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2696/paper\_254.pdf},
timestamp = {Tue, 12 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/clef/HeNADTHAZFYAWRZ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/NevesLC20,
author = {Andr{\'{e}} Neves and
Andr{\'{e}} Lam{\'{u}}rias and
Francisco M. Couto},
editor = {Linda Cappellato and
Carsten Eickhoff and
Nicola Ferro and
Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol},
title = {Extreme Multi-Label Classification applied to the Biomedical and Multilingual
Panorama},
booktitle = {Working Notes of {CLEF} 2020 - Conference and Labs of the Evaluation
Forum, Thessaloniki, Greece, September 22-25, 2020},
series = {{CEUR} Workshop Proceedings},
volume = {2696},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2696/paper\_67.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/clef/NevesLC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/RuasLC20,
author = {Pedro Ruas and
Andre Lamurias and
Francisco M. Couto},
editor = {Linda Cappellato and
Carsten Eickhoff and
Nicola Ferro and
Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol},
title = {LasigeBioTM Team at {CLEF2020} ChEMU Evaluation Lab: Named Entity
Recognition and Event extraction from chemical reactions described
in patents using BioBERT {NER} and {RE}},
booktitle = {Working Notes of {CLEF} 2020 - Conference and Labs of the Evaluation
Forum, Thessaloniki, Greece, September 22-25, 2020},
series = {{CEUR} Workshop Proceedings},
volume = {2696},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2696/paper\_175.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/clef/RuasLC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ecir/BarrosMC20,
author = {M{\'{a}}rcia Barros and
Andr{\'{e}} Moitinho and
Francisco M. Couto},
editor = {Joemon M. Jose and
Emine Yilmaz and
Jo{\~{a}}o Magalh{\~{a}}es and
Pablo Castells and
Nicola Ferro and
M{\'{a}}rio J. Silva and
Fl{\'{a}}vio Martins},
title = {Hybrid Semantic Recommender System for Chemical Compounds},
booktitle = {Advances in Information Retrieval - 42nd European Conference on {IR}
Research, {ECIR} 2020, Lisbon, Portugal, April 14-17, 2020, Proceedings,
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {12036},
pages = {94--101},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45442-5\_12},
doi = {10.1007/978-3-030-45442-5\_12},
timestamp = {Tue, 16 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ecir/BarrosMC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ecir/CoutoK20,
author = {Francisco M. Couto and
Martin Krallinger},
editor = {Joemon M. Jose and
Emine Yilmaz and
Jo{\~{a}}o Magalh{\~{a}}es and
Pablo Castells and
Nicola Ferro and
M{\'{a}}rio J. Silva and
Fl{\'{a}}vio Martins},
title = {Proposal of the First International Workshop on Semantic Indexing
and Information Retrieval for Health from Heterogeneous Content Types
and Languages {(SIIRH)}},
booktitle = {Advances in Information Retrieval - 42nd European Conference on {IR}
Research, {ECIR} 2020, Lisbon, Portugal, April 14-17, 2020, Proceedings,
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {12036},
pages = {654--659},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45442-5\_87},
doi = {10.1007/978-3-030-45442-5\_87},
timestamp = {Mon, 04 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ecir/CoutoK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ecir/CoutoK20a,
author = {Francisco M. Couto and
Martin Krallinger},
editor = {Francisco M. Couto and
Martin Krallinger},
title = {Report of the First International Workshop on Semantic Indexing and
Information Retrieval for Health from heterogeneous content types
and languages},
booktitle = {Proceedings of the Workshop on Semantic Indexing and Information Retrieval
for Health from heterogeneous content types and languages co-located
with 42nd European Conference on Information Retrieval, SIIRH@ECIR
2020, Lisbon, Portugal, April 14, 2020},
series = {{CEUR} Workshop Proceedings},
volume = {2619},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2619/paper4.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:16 +0100},
biburl = {https://dblp.org/rec/conf/ecir/CoutoK20a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ecir/NevesLC20,
author = {Andr{\'{e}} Neves and
Andr{\'{e}} Lam{\'{u}}rias and
Francisco M. Couto},
editor = {Francisco M. Couto and
Martin Krallinger},
title = {Biomedical Question Answering using Extreme Multi-Label Classification
and Ontologies in the Multilingual Panorama},
booktitle = {Proceedings of the Workshop on Semantic Indexing and Information Retrieval
for Health from heterogeneous content types and languages co-located
with 42nd European Conference on Information Retrieval, SIIRH@ECIR
2020, Lisbon, Portugal, April 14, 2020},
series = {{CEUR} Workshop Proceedings},
volume = {2619},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2619/short2.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ecir/NevesLC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ecir/RuasLC20,
author = {Pedro Ruas and
Andr{\'{e}} Lam{\'{u}}rias and
Francisco M. Couto},
editor = {Francisco M. Couto and
Martin Krallinger},
title = {Towards a Multilingual Corpus for Named Entity Linking Evaluation
in the Clinical Domain},
booktitle = {Proceedings of the Workshop on Semantic Indexing and Information Retrieval
for Health from heterogeneous content types and languages co-located
with 42nd European Conference on Information Retrieval, SIIRH@ECIR
2020, Lisbon, Portugal, April 14, 2020},
series = {{CEUR} Workshop Proceedings},
volume = {2619},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2619/short3.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ecir/RuasLC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ecir/SousaC20,
author = {Diana F. Sousa and
Francisco M. Couto},
editor = {Joemon M. Jose and
Emine Yilmaz and
Jo{\~{a}}o Magalh{\~{a}}es and
Pablo Castells and
Nicola Ferro and
M{\'{a}}rio J. Silva and
Fl{\'{a}}vio Martins},
title = {BiOnt: Deep Learning Using Multiple Biomedical Ontologies for Relation
Extraction},
booktitle = {Advances in Information Retrieval - 42nd European Conference on {IR}
Research, {ECIR} 2020, Lisbon, Portugal, April 14-17, 2020, Proceedings,
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {12036},
pages = {367--374},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45442-5\_46},
doi = {10.1007/978-3-030-45442-5\_46},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ecir/SousaC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emnlp/BarrosLSRC20,
author = {M{\'{a}}rcia Barros and
Andre Lamurias and
Diana F. Sousa and
Pedro Ruas and
Francisco M. Couto},
editor = {Karin Verspoor and
Kevin Bretonnel Cohen and
Michael Conway and
Berry de Bruijn and
Mark Dredze and
Rada Mihalcea and
Byron C. Wallace},
title = {{COVID-19:} {A} Semantic-Based Pipeline for Recommending Biomedical
Entities},
booktitle = {Proceedings of the 1st Workshop on {NLP} for COVID-19@ {EMNLP} 2020,
Online, December 2020},
publisher = {Association for Computational Linguistics},
year = {2020},
url = {https://doi.org/10.18653/v1/2020.nlpcovid19-2.20},
doi = {10.18653/V1/2020.NLPCOVID19-2.20},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/emnlp/BarrosLSRC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hri/HashemianCMPSP20,
author = {Mojgan Hashemian and
Marta Couto and
Samuel Mascarenhas and
Ana Paiva and
Pedro Alexandre Santos and
Rui Prada},
editor = {Tony Belpaeme and
James E. Young and
Hatice Gunes and
Laurel D. Riek},
title = {Persuasive Social Robots using Reward/Coercion Strategies},
booktitle = {Companion of the 2020 {ACM/IEEE} International Conference on Human-Robot
Interaction, {HRI} 2020, Cambridge, UK, March 23-26, 2020},
pages = {230--232},
publisher = {{ACM}},
year = {2020},
url = {https://doi.org/10.1145/3371382.3378373},
doi = {10.1145/3371382.3378373},
timestamp = {Thu, 20 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/hri/HashemianCMPSP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hri/HashemianMCPSP20,
author = {Mojgan Hashemian and
Samuel Mascarenhas and
Marta Couto and
Ana Paiva and
Pedro Alexandre Santos and
Rui Prada},
editor = {Tony Belpaeme and
James E. Young and
Hatice Gunes and
Laurel D. Riek},
title = {The Application of Social Power in Persuasive Social Robots},
booktitle = {Companion of the 2020 {ACM/IEEE} International Conference on Human-Robot
Interaction, {HRI} 2020, Cambridge, UK, March 23-26, 2020},
pages = {564--566},
publisher = {{ACM}},
year = {2020},
url = {https://doi.org/10.1145/3371382.3377447},
doi = {10.1145/3371382.3377447},
timestamp = {Thu, 20 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/hri/HashemianMCPSP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recsys/ColacoBC20,
author = {F{\'{a}}bio Cola{\c{c}}o and
M{\'{a}}rcia Barros and
Francisco M. Couto},
editor = {Rodrygo L. T. Santos and
Leandro Balby Marinho and
Elizabeth M. Daly and
Li Chen and
Kim Falk and
Noam Koenigstein and
Edleno Silva de Moura},
title = {DRecPy: {A} Python Framework for Developing Deep Learning-Based Recommenders},
booktitle = {RecSys 2020: Fourteenth {ACM} Conference on Recommender Systems, Virtual
Event, Brazil, September 22-26, 2020},
pages = {675--680},
publisher = {{ACM}},
year = {2020},
url = {https://doi.org/10.1145/3383313.3418483},
doi = {10.1145/3383313.3418483},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recsys/ColacoBC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ro-man/HashemianCMPSP20,
author = {Mojgan Hashemian and
Marta Couto and
Samuel Mascarenhas and
Ana Paiva and
Pedro Alexandre Santos and
Rui Prada},
title = {Investigating Reward/Punishment Strategies in the Persuasiveness of
Social Robots},
booktitle = {29th {IEEE} International Conference on Robot and Human Interactive
Communication, {RO-MAN} 2020, Naples, Italy, August 31 - September
4, 2020},
pages = {863--868},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/RO-MAN47096.2020.9223608},
doi = {10.1109/RO-MAN47096.2020.9223608},
timestamp = {Thu, 20 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ro-man/HashemianCMPSP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/LimaFCCP20,
author = {Beatriz Lima and
Daniel Faria and
Francisco M. Couto and
Isabel F. Cruz and
Catia Pesquita},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Oktie Hassanzadeh and
C{\'{a}}ssia Trojahn},
title = {{OAEI} 2020 results for {AML} and {AMLC}},
booktitle = {Proceedings of the 15th International Workshop on Ontology Matching
co-located with the 19th International Semantic Web Conference {(ISWC}
2020), Virtual conference (originally planned to be in Athens, Greece),
November 2, 2020},
series = {{CEUR} Workshop Proceedings},
volume = {2788},
pages = {154--160},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2788/oaei20\_paper3.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:06 +0100},
biburl = {https://dblp.org/rec/conf/semweb/LimaFCCP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sepln/RuasNACA20,
author = {Pedro Ruas and
Andr{\'{e}} Neves and
Vitor D. T. Andrade and
Francisco M. Couto and
Mario Ezra Arag{\'{o}}n},
editor = {Miguel {\'{A}}ngel Garc{\'{\i}}a Cumbreras and
Julio Gonzalo and
Eugenio Mart{\'{\i}}nez C{\'{a}}mara and
Raquel Mart{\'{\i}}nez{-}Unanue and
Paolo Rosso and
Salud M. Jim{\'{e}}nez{-}Zafra and
Jenny Alexandra Ortiz Zambrano and
Antonio Miranda and
Jordi Porta Zamorano and
Yoan Guti{\'{e}}rrez and
Aiala Ros{\'{a}} and
Manuel Montes{-}y{-}G{\'{o}}mez and
Manuel Garc{\'{\i}}a Vega},
title = {LasigeBioTM at {CANTEMIST:} Named Entity Recognition and Normalization
of Tumour Morphology Entities and Clinical Coding of Spanish Health-related
Documents},
booktitle = {Proceedings of the Iberian Languages Evaluation Forum (IberLEF 2020)
co-located with 36th Conference of the Spanish Society for Natural
Language Processing {(SEPLN} 2020), M{\'{a}}laga, Spain, September
23th, 2020},
series = {{CEUR} Workshop Proceedings},
volume = {2664},
pages = {422--437},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2664/cantemist\_paper11.pdf},
timestamp = {Mon, 05 Aug 2024 13:04:25 +0200},
biburl = {https://dblp.org/rec/conf/sepln/RuasNACA20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/socrob/TulliCVYMP20,
author = {Silvia Tulli and
Marta Couto and
Miguel Vasco and
Elmira Yadollahi and
Francisco S. Melo and
Ana Paiva},
editor = {Alan R. Wagner and
David Feil{-}Seifer and
Kerstin Sophie Haring and
Silvia Rossi and
Thomas Emrys Williams and
Hongsheng He and
Shuzhi Sam Ge},
title = {Explainable Agency by Revealing Suboptimality in Child-Robot Learning
Scenarios},
booktitle = {Social Robotics - 12th International Conference, {ICSR} 2020, Golden,
CO, USA, November 14-18, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12483},
pages = {23--35},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-62056-1\_3},
doi = {10.1007/978-3-030-62056-1\_3},
timestamp = {Wed, 21 Dec 2022 13:24:29 +0100},
biburl = {https://dblp.org/rec/conf/socrob/TulliCVYMP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ecir/2020siirh,
editor = {Francisco M. Couto and
Martin Krallinger},
title = {Proceedings of the Workshop on Semantic Indexing and Information Retrieval
for Health from heterogeneous content types and languages co-located
with 42nd European Conference on Information Retrieval, SIIRH@ECIR
2020, Lisbon, Portugal, April 14, 2020},
series = {{CEUR} Workshop Proceedings},
volume = {2619},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2619},
urn = {urn:nbn:de:0074-2619-2},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ecir/2020siirh.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/fm/2019-w1,
editor = {Emil Sekerinski and
Nelma Moreira and
Jos{\'{e}} N. Oliveira and
Daniel Ratiu and
Riccardo Guidotti and
Marie Farrell and
Matt Luckcuck and
Diego Marmsoler and
Jos{\'{e}} Creissac Campos and
Troy Astarte and
Laure Gonnord and
Antonio Cerone and
Luis Couto and
Brijesh Dongol and
Martin Kutrib and
Pedro Monteiro and
David Delmas},
title = {Formal Methods. {FM} 2019 International Workshops - Porto, Portugal,
October 7-11, 2019, Revised Selected Papers, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {12232},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-54994-7},
doi = {10.1007/978-3-030-54994-7},
isbn = {978-3-030-54993-0},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/fm/2019-w1.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/fm/2019-w2,
editor = {Emil Sekerinski and
Nelma Moreira and
Jos{\'{e}} N. Oliveira and
Daniel Ratiu and
Riccardo Guidotti and
Marie Farrell and
Matt Luckcuck and
Diego Marmsoler and
Jos{\'{e}} Creissac Campos and
Troy Astarte and
Laure Gonnord and
Antonio Cerone and
Luis Couto and
Brijesh Dongol and
Martin Kutrib and
Pedro Monteiro and
David Delmas},
title = {Formal Methods. {FM} 2019 International Workshops - Porto, Portugal,
October 7-11, 2019, Revised Selected Papers, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {12233},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-54997-8},
doi = {10.1007/978-3-030-54997-8},
isbn = {978-3-030-54996-1},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/fm/2019-w2.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2001-07139,
author = {Diana F. Sousa and
Francisco M. Couto},
title = {BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation
Extraction},
journal = {CoRR},
volume = {abs/2001.07139},
year = {2020},
url = {https://arxiv.org/abs/2001.07139},
eprinttype = {arXiv},
eprint = {2001.07139},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2001-07139.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2001-07440,
author = {M{\'{a}}rcia Barros and
Andr{\'{e}} Moitinho and
Francisco M. Couto},
title = {Hybrid Semantic Recommender System for Chemical Compounds},
journal = {CoRR},
volume = {abs/2001.07440},
year = {2020},
url = {https://arxiv.org/abs/2001.07440},
eprinttype = {arXiv},
eprint = {2001.07440},
timestamp = {Fri, 24 Jan 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2001-07440.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2002-02375,
author = {Andre Lamurias and
Diana F. Sousa and
Francisco M. Couto},
title = {Generating Scientific Question Answering Corpora from Q{\&}A forums},
journal = {CoRR},
volume = {abs/2002.02375},
year = {2020},
url = {https://arxiv.org/abs/2002.02375},
eprinttype = {arXiv},
eprint = {2002.02375},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2002-02375.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2005-06748,
author = {S{\'{e}}rgio Nunes and
Suzanne Little and
Sumit Bhatia and
Ludovico Boratto and
Guillaume Cabanac and
Ricardo Campos and
Francisco M. Couto and
Stefano Faralli and
Ingo Frommholz and
Adam Jatowt and
Al{\'{\i}}pio Jorge and
Mirko Marras and
Philipp Mayr and
Giovanni Stilo},
title = {{ECIR} 2020 Workshops: Assessing the Impact of Going Online},
journal = {CoRR},
volume = {abs/2005.06748},
year = {2020},
url = {https://arxiv.org/abs/2005.06748},
eprinttype = {arXiv},
eprint = {2005.06748},
timestamp = {Fri, 22 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2005-06748.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/access/BarrosMC19,
author = {M{\'{a}}rcia Barros and
Andr{\'{e}} Moitinho and
Francisco M. Couto},
title = {Using Research Literature to Generate Datasets of Implicit Feedback
for Recommending Scientific Items},
journal = {{IEEE} Access},
volume = {7},
pages = {176668--176680},
year = {2019},
url = {https://doi.org/10.1109/ACCESS.2019.2958002},
doi = {10.1109/ACCESS.2019.2958002},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/access/BarrosMC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/artmed/MeloSBCFFGJKLLM19,
author = {Francisco S. Melo and
Alberto Sardinha and
David Belo and
Marta Couto and
Miguel Faria and
Anabela Farias and
Hugo Gamboa and
C{\'{a}}tia Jesus and
Mithun Kinarullathil and
Pedro U. Lima and
Lu{\'{\i}}s Luz and
Andr{\'{e}} Mateus and
Isabel Melo and
Plinio Moreno and
Daniel Faustino de Noronha Os{\'{o}}rio and
Ana Paiva and
Jhielson M. Pimentel and
Jo{\~{a}}o Rodrigues and
Rodrigo Ventura},
title = {Project {INSIDE:} towards autonomous semi-unstructured human-robot
social interaction in autism therapy},
journal = {Artif. Intell. Medicine},
volume = {96},
pages = {198--216},
year = {2019},
url = {https://doi.org/10.1016/j.artmed.2018.12.003},
doi = {10.1016/J.ARTMED.2018.12.003},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/artmed/MeloSBCFFGJKLLM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FerreiraC19,
author = {Jo{\~{a}}o D. Ferreira and
Francisco M. Couto},
title = {Multi-domain semantic similarity in biomedical research},
journal = {{BMC} Bioinform.},
volume = {20-S},
number = {10},
pages = {23--31},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-2810-9},
doi = {10.1186/S12859-019-2810-9},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FerreiraC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LamuriasRC19,
author = {Andre Lamurias and
Pedro Ruas and
Francisco M. Couto},
title = {{PPR-SSM:} personalized PageRank and semantic similarity measures
for entity linking},
journal = {{BMC} Bioinform.},
volume = {20},
number = {1},
pages = {534:1--534:12},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-3157-y},
doi = {10.1186/S12859-019-3157-Y},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LamuriasRC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LamuriasSCC19,
author = {Andre Lamurias and
Diana F. Sousa and
Luka A. Clarke and
Francisco M. Couto},
title = {{BO-LSTM:} classifying relations via long short-term memory networks
along biomedical ontologies},
journal = {{BMC} Bioinform.},
volume = {20},
number = {1},
pages = {10},
year = {2019},
url = {https://doi.org/10.1186/s12859-018-2584-5},
doi = {10.1186/S12859-018-2584-5},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LamuriasSCC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candie/AmorimAFC19,
author = {Marco Amorim and
Francisco Antunes and
Sara Ferreira and
Ant{\'{o}}nio Couto},
title = {An integrated approach for strategic and tactical decisions for the
emergency medical service: Exploring optimization and metamodel-based
simulation for vehicle location},
journal = {Comput. Ind. Eng.},
volume = {137},
year = {2019},
url = {https://doi.org/10.1016/j.cie.2019.106057},
doi = {10.1016/J.CIE.2019.106057},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/candie/AmorimAFC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/atal/BarakaCMV19,
author = {Kim Baraka and
Marta Couto and
Francisco S. Melo and
Manuela Veloso},
editor = {Edith Elkind and
Manuela Veloso and
Noa Agmon and
Matthew E. Taylor},
title = {An Optimization Approach for Structured Agent-Based Provider/Receiver
Tasks},
booktitle = {Proceedings of the 18th International Conference on Autonomous Agents
and MultiAgent Systems, {AAMAS} '19, Montreal, QC, Canada, May 13-17,
2019},
pages = {95--103},
publisher = {International Foundation for Autonomous Agents and Multiagent Systems},
year = {2019},
url = {http://dl.acm.org/citation.cfm?id=3331679},
timestamp = {Wed, 29 May 2019 16:36:58 +0200},
biburl = {https://dblp.org/rec/conf/atal/BarakaCMV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/LamuriasC19,
author = {Andre Lamurias and
Francisco M. Couto},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {LasigeBioTM at {MEDIQA} 2019: Biomedical Question Answering using
Bidirectional Transformers and Named Entity Recognition},
booktitle = {Proceedings of the 18th BioNLP Workshop and Shared Task, BioNLP@ACL
2019, Florence, Italy, August 1, 2019},
pages = {523--527},
publisher = {Association for Computational Linguistics},
year = {2019},
url = {https://doi.org/10.18653/v1/w19-5057},
doi = {10.18653/V1/W19-5057},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/LamuriasC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ew/SilvaDSMACMS19,
author = {Francisco Jose Couto da Silva and
Sebastian Bro Damsgaard and
Mikki Alexander Mousing Sorensen and
Flavien Marty and
Bandar Altariqi and
Eleftheria Chatzigianni and
Tatiana K. Madsen and
Hans{-}Peter Schwefel},
title = {Analysis of Blockchain Forking on an Ethereum Network},
booktitle = {25th European Wireless Conference, {EW} 2019, Aarhus, Denmark, May
2-4, 2019},
pages = {1--6},
publisher = {{VDE} / {IEEE}},
year = {2019},
url = {https://ieeexplore.ieee.org/document/8835935},
timestamp = {Tue, 03 Nov 2020 15:55:12 +0100},
biburl = {https://dblp.org/rec/conf/ew/SilvaDSMACMS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iceis/SantosVTV19,
author = {Francisco Miguel de Lemos Santos and
Andr{\'{e}} Vasconcelos and
Jos{\'{e}} Tribolet and
Pedro Viana},
editor = {Joaquim Filipe and
Michal Smialek and
Alexander Brodsky and
Slimane Hammoudi},
title = {ticAPP - Digital Transformation in the Portuguese Government},
booktitle = {Proceedings of the 21st International Conference on Enterprise Information
Systems, {ICEIS} 2019, Heraklion, Crete, Greece, May 3-5, 2019, Volume
2},
pages = {612--619},
publisher = {SciTePress},
year = {2019},
url = {https://doi.org/10.5220/0007728606120619},
doi = {10.5220/0007728606120619},
timestamp = {Tue, 06 Jun 2023 14:58:01 +0200},
biburl = {https://dblp.org/rec/conf/iceis/SantosVTV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icgi2/AraujoCC19,
author = {Jo{\~{a}}o Miguel Ara{\'{u}}jo and
Rui Couto and
Jos{\'{e}} Creissac Campos},
title = {A Generator of User Interface Prototypes for the {IVY} Workbench},
booktitle = {International Conference on Graphics and Interaction, {ICGI} 2019,
Faro, Portugal, November 21-22, 2019},
pages = {32--39},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/ICGI47575.2019.8955088},
doi = {10.1109/ICGI47575.2019.8955088},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icgi2/AraujoCC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/memea/SilvaGNMAPS19,
author = {Joana Silva and
Diana Gomes and
Francisco Nunes and
Dinis Moreira and
Jos{\'{e}} Alves and
Ana Pereira and
In{\^{e}}s Sousa},
title = {Position-independent Physical Activity Monitoring: Development and
Comparison with Market Devices},
booktitle = {{IEEE} International Symposium on Medical Measurements and Applications,
MeMeA 2019, Istanbul, Turkey, June 26-28, 2019},
pages = {1--5},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/MeMeA.2019.8802140},
doi = {10.1109/MEMEA.2019.8802140},
timestamp = {Wed, 31 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/memea/SilvaGNMAPS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/micad/CoutoFMHFPCV19,
author = {Mafalda Couto and
Jo{\~{a}}o Gomes Fonseca and
Ant{\'{o}}nio H. J. Moreira and
Tiago Henriques{-}Coelho and
Jaime C. Fonseca and
Ant{\'{o}}nio C. M. Pinho and
Jorge Correia{-}Pinto and
Jo{\~{a}}o L. Vila{\c{c}}a},
editor = {Kensaku Mori and
Horst K. Hahn},
title = {Patient-specific outcome simulation after surgical correction of Pectus
Excavatum: a preliminary study},
booktitle = {Medical Imaging 2019: Computer-Aided Diagnosis, San Diego, California,
United States, 16-21 February 2019},
series = {{SPIE} Proceedings},
volume = {10950},
pages = {109504I},
publisher = {{SPIE}},
year = {2019},
url = {https://doi.org/10.1117/12.2512773},
doi = {10.1117/12.2512773},
timestamp = {Wed, 11 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/micad/CoutoFMHFPCV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/naacl/SousaLC19,
author = {Diana F. Sousa and
Andre Lamurias and
Francisco M. Couto},
editor = {Jill Burstein and
Christy Doran and
Thamar Solorio},
title = {A Silver Standard Corpus of Human Phenotype-Gene Relations},
booktitle = {Proceedings of the 2019 Conference of the North American Chapter of
the Association for Computational Linguistics: Human Language Technologies,
{NAACL-HLT} 2019, Minneapolis, MN, USA, June 2-7, 2019, Volume 1 (Long
and Short Papers)},
pages = {1487--1492},
publisher = {Association for Computational Linguistics},
year = {2019},
url = {https://doi.org/10.18653/v1/n19-1152},
doi = {10.18653/V1/N19-1152},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/naacl/SousaLC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/FariaPTCC19,
author = {Daniel Faria and
Catia Pesquita and
Teemu Tervo and
Francisco M. Couto and
Isabel F. Cruz},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Oktie Hassanzadeh and
C{\'{a}}ssia Trojahn},
title = {{AML} and {AMLC} Results for {OAEI} 2019},
booktitle = {Proceedings of the 14th International Workshop on Ontology Matching
co-located with the 18th International Semantic Web Conference {(ISWC}
2019), Auckland, New Zealand, October 26, 2019},
series = {{CEUR} Workshop Proceedings},
volume = {2536},
pages = {101--106},
publisher = {CEUR-WS.org},
year = {2019},
url = {https://ceur-ws.org/Vol-2536/oaei19\_paper3.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:08 +0100},
biburl = {https://dblp.org/rec/conf/semweb/FariaPTCC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/bioinf/CoutoL19,
author = {Francisco M. Couto and
Andre Lamurias},
editor = {Shoba Ranganathan and
Michael Gribskov and
Kenta Nakai and
Christian Sch{\"{o}}nbach},
title = {Semantic Similarity Definition},
booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume
1},
pages = {870--876},
publisher = {Elsevier},
year = {2019},
url = {https://doi.org/10.1016/b978-0-12-809633-8.20401-9},
doi = {10.1016/B978-0-12-809633-8.20401-9},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/reference/bioinf/CoutoL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/bioinf/LamuriasC19,
author = {Andre Lamurias and
Francisco M. Couto},
editor = {Shoba Ranganathan and
Michael Gribskov and
Kenta Nakai and
Christian Sch{\"{o}}nbach},
title = {Text Mining for Bioinformatics Using Biomedical Literature},
booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume
1},
pages = {602--611},
publisher = {Elsevier},
year = {2019},
url = {https://doi.org/10.1016/b978-0-12-809633-8.20409-3},
doi = {10.1016/B978-0-12-809633-8.20409-3},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/reference/bioinf/LamuriasC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1903-10728,
author = {Diana F. Sousa and
Andre Lamurias and
Francisco M. Couto},
title = {A Silver Standard Corpus of Human Phenotype-Gene Relations},
journal = {CoRR},
volume = {abs/1903.10728},
year = {2019},
url = {http://arxiv.org/abs/1903.10728},
eprinttype = {arXiv},
eprint = {1903.10728},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1903-10728.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1905-11391,
author = {Diana F. Sousa and
Andre Lamurias and
Francisco M. Couto},
title = {Using Neural Networks for Relation Extraction from Biomedical Literature},
journal = {CoRR},
volume = {abs/1905.11391},
year = {2019},
url = {http://arxiv.org/abs/1905.11391},
eprinttype = {arXiv},
eprint = {1905.11391},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1905-11391.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/FariaPMMCC18,
author = {Daniel Faria and
Catia Pesquita and
Isabela Mott and
Catarina Martins and
Francisco M. Couto and
Isabel F. Cruz},
title = {Tackling the challenges of matching biomedical ontologies},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {4:1--4:19},
year = {2018},
url = {https://doi.org/10.1186/s13326-017-0170-9},
doi = {10.1186/S13326-017-0170-9},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/FariaPMMCC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/DecouchantFVCV18,
author = {J{\'{e}}r{\'{e}}mie Decouchant and
Maria Fernandes and
Marcus V{\"{o}}lp and
Francisco M. Couto and
Paulo Jorge Esteves Ver{\'{\i}}ssimo},
title = {Accurate filtering of privacy-sensitive information in raw genomic
data},
journal = {J. Biomed. Informatics},
volume = {82},
pages = {1--12},
year = {2018},
url = {https://doi.org/10.1016/j.jbi.2018.04.006},
doi = {10.1016/J.JBI.2018.04.006},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/DecouchantFVCV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/CoutoL18,
author = {Francisco M. Couto and
Andre Lamurias},
title = {{MER:} a shell script and annotation server for minimal named entity
recognition and linking},
journal = {J. Cheminformatics},
volume = {10},
number = {1},
pages = {58:1--58:10},
year = {2018},
url = {https://doi.org/10.1186/s13321-018-0312-9},
doi = {10.1186/S13321-018-0312-9},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcheminf/CoutoL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwec/SilvaOMNCMP18,
author = {Joana Silva and
Elsa Oliveira and
Dinis Moreira and
Francisco Nunes and
Martina Caic and
Jo{\~{a}}o Madureira and
Eduardo Pereira},
editor = {Esteban Clua and
Licinio Roque and
Artur Lugmayr and
Pauliina Tuomi},
title = {Design and Evaluation of a Fall Prevention Multiplayer Game for Senior
Care Centres},
booktitle = {Entertainment Computing - {ICEC} 2018 - 17th {IFIP} {TC} 14 International
Conference, Held at the 24th {IFIP} World Computer Congress, {WCC}
2018, Poznan, Poland, September 17-20, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11112},
pages = {103--114},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99426-0\_9},
doi = {10.1007/978-3-319-99426-0\_9},
timestamp = {Wed, 31 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iwec/SilvaOMNCMP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/FariaPBTCGCC18,
author = {Daniel Faria and
Catia Pesquita and
Booma Sowkarthiga Balasubramani and
Teemu Tervo and
David Carri{\c{c}}o and
Rodrigo Garrilha and
Francisco M. Couto and
Isabel F. Cruz},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Michelle Cheatham and
Oktie Hassanzadeh},
title = {Results of {AML} participation in {OAEI} 2018},
booktitle = {Proceedings of the 13th International Workshop on Ontology Matching
co-located with the 17th International Semantic Web Conference, OM@ISWC
2018, Monterey, CA, USA, October 8, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2288},
pages = {125--131},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2288/oaei18\_paper2.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:03 +0100},
biburl = {https://dblp.org/rec/conf/semweb/FariaPBTCGCC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sqamia/Pereira0RRS18,
author = {Rui Pereira and
Marco Couto and
Francisco Ribeiro and
Rui Rua and
Jo{\~{a}}o Saraiva},
editor = {Zoran Budimac},
title = {Energyware Analysis},
booktitle = {Proceedings of the Seventh Workshop on Software Quality Analysis,
Monitoring, Improvement, and Applications, {SQAMIA} 2018, Novi Sad,
Serbia, August 27-30, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2217},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2217/paper-per.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:29 +0100},
biburl = {https://dblp.org/rec/conf/sqamia/Pereira0RRS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/webi/AzevedoNMS18,
author = {Francisco Galuppo Azevedo and
Bruno Demattos Nogueira and
Fabricio Murai and
Ana Paula Couto da Silva},
title = {Estimation Errors in Network {A/B} Testing Due to Sample Variance
and Model Misspecification},
booktitle = {2018 {IEEE/WIC/ACM} International Conference on Web Intelligence,
{WI} 2018, Santiago, Chile, December 3-6, 2018},
pages = {540--545},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.org/10.1109/WI.2018.00-40},
doi = {10.1109/WI.2018.00-40},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/webi/AzevedoNMS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/corr/abs-1811-10817,
author = {Rui Couto and
Jos{\'{e}} Creissac Campos and
Nuno Macedo and
Alcino Cunha},
editor = {Paolo Masci and
Rosemary Monahan and
Virgile Prevosto},
title = {Improving the Visualization of Alloy Instances},
booktitle = {Proceedings 4th Workshop on Formal Integrated Development Environment,
F-IDE@FLoC 2018, Oxford, England, 14 July 2018},
series = {{EPTCS}},
volume = {284},
pages = {37--52},
year = {2018},
url = {https://doi.org/10.4204/EPTCS.284.4},
doi = {10.4204/EPTCS.284.4},
timestamp = {Tue, 25 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1811-10817.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1803-03497,
author = {Francisco Galuppo Azevedo and
Bruno Demattos Nogueira and
Fabricio Murai and
Ana Paula Couto da Silva},
title = {Modelos de Resposta para Experimentos Randomizados em Redes Sociais
de Larga Escala},
journal = {CoRR},
volume = {abs/1803.03497},
year = {2018},
url = {http://arxiv.org/abs/1803.03497},
eprinttype = {arXiv},
eprint = {1803.03497},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1803-03497.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/CamposPC17,
author = {Lu{\'{\i}}s Campos and
Vasco Pedro and
Francisco M. Couto},
title = {Impact of translation on named-entity recognition in radiology texts},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax064},
year = {2017},
url = {https://doi.org/10.1093/database/bax064},
doi = {10.1093/DATABASE/BAX064},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/CamposPC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/FerreiraISC17,
author = {Jo{\~{a}}o D. Ferreira and
Bruno In{\'{a}}cio and
Reza M. Salek and
Francisco M. Couto},
title = {Assessing Public Metabolomics Metadata, Towards Improving Quality},
journal = {J. Integr. Bioinform.},
volume = {14},
number = {4},
year = {2017},
url = {https://doi.org/10.1515/jib-2017-0054},
doi = {10.1515/JIB-2017-0054},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/FerreiraISC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eics/MachadoCC17,
author = {Marina Machado and
Rui Couto and
Jos{\'{e}} Creissac Campos},
editor = {Jos{\'{e}} Creissac Campos and
Nuno Nunes and
Pedro Campos and
Ga{\"{e}}lle Calvary and
Jeffrey Nichols and
C{\'{e}}lia Martinie and
Jos{\'{e}} Lu{\'{\i}}s Silva},
title = {{MODUS:} model-based user interfaces prototyping},
booktitle = {Proceedings of the {ACM} {SIGCHI} Symposium on Engineering Interactive
Computing Systems, {EICS} 2017, Lisbon, Portugal, June 26-29, 2017},
pages = {111--116},
publisher = {{ACM}},
year = {2017},
url = {https://doi.org/10.1145/3102113.3102146},
doi = {10.1145/3102113.3102146},
timestamp = {Sun, 26 Nov 2023 00:57:51 +0100},
biburl = {https://dblp.org/rec/conf/eics/MachadoCC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pacbb/BarataCC17,
author = {Ant{\'{o}}nio Barata and
Luc{\'{\i}}lia Carvalho and
Francisco M. Couto},
editor = {Florentino Fdez{-}Riverola and
Mohd Saberi Mohamad and
Miguel P. Rocha and
Juan F. De Paz and
Tiago Pinto},
title = {Anthropometric Data Analytics: {A} Portuguese Case Study},
booktitle = {11th International Conference on Practical Applications of Computational
Biology {\&} Bioinformatics, {PACBB} 2017, Porto, Portugal, 21-23
June, 2017},
series = {Advances in Intelligent Systems and Computing},
volume = {616},
pages = {92--100},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-60816-7\_12},
doi = {10.1007/978-3-319-60816-7\_12},
timestamp = {Wed, 12 Oct 2022 08:58:54 +0200},
biburl = {https://dblp.org/rec/conf/pacbb/BarataCC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pacbb/CogoBCGFV17,
author = {Vinicius Vielmo Cogo and
Alysson Bessani and
Francisco M. Couto and
Margarida Gama{-}Carvalho and
Maria Fernandes and
Paulo Jorge Esteves Ver{\'{\i}}ssimo},
editor = {Florentino Fdez{-}Riverola and
Mohd Saberi Mohamad and
Miguel P. Rocha and
Juan F. De Paz and
Tiago Pinto},
title = {How Can Photo Sharing Inspire Sharing Genomes?},
booktitle = {11th International Conference on Practical Applications of Computational
Biology {\&} Bioinformatics, {PACBB} 2017, Porto, Portugal, 21-23
June, 2017},
series = {Advances in Intelligent Systems and Computing},
volume = {616},
pages = {74--82},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-60816-7\_10},
doi = {10.1007/978-3-319-60816-7\_10},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/pacbb/CogoBCGFV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pacbb/FernandesDCV17,
author = {Maria Fernandes and
J{\'{e}}r{\'{e}}mie Decouchant and
Francisco M. Couto and
Paulo Jorge Esteves Ver{\'{\i}}ssimo},
editor = {Florentino Fdez{-}Riverola and
Mohd Saberi Mohamad and
Miguel P. Rocha and
Juan F. De Paz and
Tiago Pinto},
title = {Cloud-Assisted Read Alignment and Privacy},
booktitle = {11th International Conference on Practical Applications of Computational
Biology {\&} Bioinformatics, {PACBB} 2017, Porto, Portugal, 21-23
June, 2017},
series = {Advances in Intelligent Systems and Computing},
volume = {616},
pages = {220--227},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-60816-7\_27},
doi = {10.1007/978-3-319-60816-7\_27},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/pacbb/FernandesDCV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pacbb/InacioFC17,
author = {Bruno In{\'{a}}cio and
Jo{\~{a}}o D. Ferreira and
Francisco M. Couto},
editor = {Florentino Fdez{-}Riverola and
Mohd Saberi Mohamad and
Miguel P. Rocha and
Juan F. De Paz and
Tiago Pinto},
title = {Metadata Analyser: Measuring Metadata Quality},
booktitle = {11th International Conference on Practical Applications of Computational
Biology {\&} Bioinformatics, {PACBB} 2017, Porto, Portugal, 21-23
June, 2017},
series = {Advances in Intelligent Systems and Computing},
volume = {616},
pages = {197--204},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-60816-7\_24},
doi = {10.1007/978-3-319-60816-7\_24},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/pacbb/InacioFC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sblp/0001PRRS17,
author = {Marco Couto and
Rui Pereira and
Francisco Ribeiro and
Rui Rua and
Jo{\~{a}}o Saraiva},
editor = {Fabio Mascarenhas},
title = {Towards a Green Ranking for Programming Languages},
booktitle = {Proceedings of the 21st Brazilian Symposium on Programming Languages,
{SBLP} 2017, Fortaleza, CE, Brazil, September 21-22, 2017},
pages = {7:1--7:8},
publisher = {{ACM}},
year = {2017},
url = {https://doi.org/10.1145/3125374.3125382},
doi = {10.1145/3125374.3125382},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sblp/0001PRRS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/LamuriasSPCC17,
author = {Andre Lamurias and
Diana F. Sousa and
Sofia Pereira and
Luka A. Clarke and
Francisco M. Couto},
editor = {Steven Bethard and
Marine Carpuat and
Marianna Apidianaki and
Saif M. Mohammad and
Daniel M. Cer and
David Jurgens},
title = {{ULISBOA} at SemEval-2017 Task 12: Extraction and classification of
temporal expressions and events},
booktitle = {Proceedings of the 11th International Workshop on Semantic Evaluation,
SemEval@ACL 2017, Vancouver, Canada, August 3-4, 2017},
pages = {1019--1023},
publisher = {Association for Computational Linguistics},
year = {2017},
url = {https://doi.org/10.18653/v1/S17-2179},
doi = {10.18653/V1/S17-2179},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/semeval/LamuriasSPCC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/RodriguesC17,
author = {Miguel J. Rodrigues and
Francisco M. Couto},
editor = {Steven Bethard and
Marine Carpuat and
Marianna Apidianaki and
Saif M. Mohammad and
Daniel M. Cer and
David Jurgens},
title = {MoRS at SemEval-2017 Task 3: Easy to use {SVM} in Ranking Tasks},
booktitle = {Proceedings of the 11th International Workshop on Semantic Evaluation,
SemEval@ACL 2017, Vancouver, Canada, August 3-4, 2017},
pages = {287--291},
publisher = {Association for Computational Linguistics},
year = {2017},
url = {https://doi.org/10.18653/v1/S17-2046},
doi = {10.18653/V1/S17-2046},
timestamp = {Tue, 20 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/semeval/RodriguesC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/FariaBSMPCC17,
author = {Daniel Faria and
Booma S. Balasubramani and
Vivek R. Shivaprabhu and
Isabela Mott and
Catia Pesquita and
Francisco M. Couto and
Isabel F. Cruz},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Michelle Cheatham and
Oktie Hassanzadeh},
title = {Results of {AML} in {OAEI} 2017},
booktitle = {Proceedings of the 12th International Workshop on Ontology Matching
co-located with the 16th International Semantic Web Conference {(ISWC}
2017), Vienna, Austria, October 21, 2017},
series = {{CEUR} Workshop Proceedings},
volume = {2032},
pages = {122--128},
publisher = {CEUR-WS.org},
year = {2017},
url = {https://ceur-ws.org/Vol-2032/oaei17\_paper2.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:05 +0100},
biburl = {https://dblp.org/rec/conf/semweb/FariaBSMPCC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sle/Pereira0RRCFS17,
author = {Rui Pereira and
Marco Couto and
Francisco Ribeiro and
Rui Rua and
J{\'{a}}come Cunha and
Jo{\~{a}}o Paulo Fernandes and
Jo{\~{a}}o Saraiva},
editor = {Beno{\^{\i}}t Combemale and
Marjan Mernik and
Bernhard Rumpe},
title = {Energy efficiency across programming languages: how do energy, time,
and memory relate?},
booktitle = {Proceedings of the 10th {ACM} {SIGPLAN} International Conference on
Software Language Engineering, {SLE} 2017, Vancouver, BC, Canada,
October 23-24, 2017},
pages = {256--267},
publisher = {{ACM}},
year = {2017},
url = {https://doi.org/10.1145/3136014.3136031},
doi = {10.1145/3136014.3136031},
timestamp = {Thu, 21 Apr 2022 11:12:19 +0200},
biburl = {https://dblp.org/rec/conf/sle/Pereira0RRCFS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/CamposC17,
author = {Lu{\'{\i}}s Campos and
Francisco M. Couto},
title = {{MRA} - Proof of Concept of a Multilingual Report Annotator Web Application},
journal = {CoRR},
volume = {abs/1704.01748},
year = {2017},
url = {http://arxiv.org/abs/1704.01748},
eprinttype = {arXiv},
eprint = {1704.01748},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/CamposC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/BastosSCC16,
author = {Hugo P. Bastos and
Lisete Sousa and
Luka A. Clarke and
Francisco M. Couto},
title = {Functional coherence metrics in protein families},
journal = {J. Biomed. Semant.},
volume = {7},
pages = {41},
year = {2016},
url = {https://doi.org/10.1186/s13326-016-0076-y},
doi = {10.1186/S13326-016-0076-Y},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/BastosSCC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/LamuriasRCC16,
author = {Andre Lamurias and
Miguel J. Rodrigues and
Luka A. Clarke and
Francisco M. Couto},
editor = {Claire Nedellec and
Robert Bossy and
Jin{-}Dong Kim},
title = {Extraction of Regulatory Events using Kernel-based Classifiers and
Distant Supervision},
booktitle = {Proceedings of the 4th BioNLP Shared Task Workshop, BioNLP 2016, Berlin,
Germany, August 13, 2016},
pages = {88--92},
publisher = {Association for Computational Linguistics},
year = {2016},
url = {https://doi.org/10.18653/v1/W16-3011},
doi = {10.18653/V1/W16-3011},
timestamp = {Fri, 06 Aug 2021 00:41:22 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/LamuriasRCC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/BarrosLFATPC16,
author = {M{\'{a}}rcia Barros and
Andre Lamurias and
Gon{\c{c}}alo Figueir{\'{o}} and
Marta Antunes and
Joana Teixeira and
Alexandre Pinheiro and
Francisco M. Couto},
editor = {Steven Bethard and
Daniel M. Cer and
Marine Carpuat and
David Jurgens and
Preslav Nakov and
Torsten Zesch},
title = {{ULISBOA} at SemEval-2016 Task 12: Extraction of temporal expressions,
clinical events and relations using IBEnt},
booktitle = {Proceedings of the 10th International Workshop on Semantic Evaluation,
SemEval@NAACL-HLT 2016, San Diego, CA, USA, June 16-17, 2016},
pages = {1263--1267},
publisher = {The Association for Computer Linguistics},
year = {2016},
url = {https://doi.org/10.18653/v1/s16-1196},
doi = {10.18653/V1/S16-1196},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/semeval/BarrosLFATPC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/FariaPBMCCCC16,
author = {Daniel Faria and
Catia Pesquita and
Booma S. Balasubramani and
Catarina Martins and
Jo{\~{a}}o Cardoso and
Hugo Curado and
Francisco M. Couto and
Isabel F. Cruz},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Michelle Cheatham and
Oktie Hassanzadeh and
Ryutaro Ichise},
title = {{OAEI} 2016 results of {AML}},
booktitle = {Proceedings of the 11th International Workshop on Ontology Matching
co-located with the 15th International Semantic Web Conference {(ISWC}
2016), Kobe, Japan, October 18, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1766},
pages = {138--145},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1766/oaei16\_paper2.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:07 +0100},
biburl = {https://dblp.org/rec/conf/semweb/FariaPBMCCCC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/corr/CoutoRC16,
author = {Rui Couto and
Ant{\'{o}}nio Nestor Ribeiro and
Jos{\'{e}} Creissac Campos},
editor = {Jan Kofron and
Jana Tumova and
Bara Buhnova},
title = {Validating an Approach to Formalize Use Cases with Ontologies},
booktitle = {Proceedings of the 13th International Workshop on Formal Engineering
Approaches to Software Components and Architectures, FESCA@ETAPS 2016,
Eindhoven, The Netherlands, 3rd April 2016},
series = {{EPTCS}},
volume = {205},
pages = {1--15},
year = {2016},
url = {https://doi.org/10.4204/EPTCS.205.1},
doi = {10.4204/EPTCS.205.1},
timestamp = {Sun, 02 Oct 2022 15:31:45 +0200},
biburl = {https://dblp.org/rec/journals/corr/CoutoRC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/GoncalvesCC16,
author = {Diogo Gon{\c{c}}alves and
Miguel Costa and
Francisco M. Couto},
title = {A Flexible Recommendation System for Cable {TV}},
journal = {CoRR},
volume = {abs/1609.02451},
year = {2016},
url = {http://arxiv.org/abs/1609.02451},
eprinttype = {arXiv},
eprint = {1609.02451},
timestamp = {Tue, 15 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/GoncalvesCC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/GoncalvesCC16a,
author = {Diogo Gon{\c{c}}alves and
Miguel Costa and
Francisco M. Couto},
title = {A Large-Scale Characterization of User Behaviour in Cable {TV}},
journal = {CoRR},
volume = {abs/1609.02453},
year = {2016},
url = {http://arxiv.org/abs/1609.02453},
eprinttype = {arXiv},
eprint = {1609.02453},
timestamp = {Tue, 15 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/GoncalvesCC16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/RamosLSC16,
author = {Camila Ramos and
Marco Louro and
Miguel Santos and
Francisco M. Couto},
title = {Knowledge Ratings in MetaboLights},
journal = {CoRR},
volume = {abs/1604.07997},
year = {2016},
url = {http://arxiv.org/abs/1604.07997},
eprinttype = {arXiv},
eprint = {1604.07997},
timestamp = {Sat, 23 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/RamosLSC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/RodriguesFLC16,
author = {Miguel J. Rodrigues and
Miguel Fal{\'{e}} and
Andre Lamurias and
Francisco M. Couto},
title = {{WS4A:} a Biomedical Question and Answering System based on public
Web Services and Ontologies},
journal = {CoRR},
volume = {abs/1609.08492},
year = {2016},
url = {http://arxiv.org/abs/1609.08492},
eprinttype = {arXiv},
eprint = {1609.08492},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/RodriguesFLC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MachadoRFC15,
author = {Catia M. Machado and
Dietrich Rebholz{-}Schuhmann and
Ana T. Freitas and
Francisco M. Couto},
title = {The semantic web in translational medicine: current applications and
future directions},
journal = {Briefings Bioinform.},
volume = {16},
number = {1},
pages = {89--103},
year = {2015},
url = {https://doi.org/10.1093/bib/bbt079},
doi = {10.1093/BIB/BBT079},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/MachadoRFC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/GrozaKDCOSCBZR15,
author = {Tudor Groza and
Sebastian K{\"{o}}hler and
Sandra C. Doelken and
Nigel Collier and
Anika Oellrich and
Damian Smedley and
Francisco M. Couto and
Gareth Baynam and
Andreas Zankl and
Peter N. Robinson},
title = {Automatic concept recognition using the Human Phenotype Ontology reference
and test suite corpora},
journal = {Database J. Biol. Databases Curation},
volume = {2015},
year = {2015},
url = {https://doi.org/10.1093/database/bav005},
doi = {10.1093/DATABASE/BAV005},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/GrozaKDCOSCBZR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijwis/CoutoRC15,
author = {Rui Couto and
Ant{\'{o}}nio Manuel Nestor Ribeiro and
Jos{\'{e}} Francisco Creissac Freitas de Campos},
title = {The Modelery: a model-based software development repository},
journal = {Int. J. Web Inf. Syst.},
volume = {11},
number = {2},
pages = {205--225},
year = {2015},
url = {https://doi.org/10.1108/IJWIS-12-2014-0045},
doi = {10.1108/IJWIS-12-2014-0045},
timestamp = {Wed, 20 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijwis/CoutoRC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/KrallingerRL15,
author = {Martin Krallinger and
Obdulia Rabal and
Florian Leitner and
Miguel Vazquez and
David Salgado and
Zhiyong Lu and
Robert Leaman and
Yanan Lu and
Donghong Ji and
Daniel M. Lowe and
Roger A. Sayle and
Riza Theresa Batista{-}Navarro and
Rafal Rak and
Torsten Huber and
Tim Rockt{\"{a}}schel and
S{\'{e}}rgio Matos and
David Campos and
Buzhou Tang and
Hua Xu and
Tsendsuren Munkhdalai and
Keun Ho Ryu and
S. V. Ramanan and
P. Senthil Nathan and
Slavko Zitnik and
Marko Bajec and
Lutz Weber and
Matthias Irmer and
Saber A. Akhondi and
Jan A. Kors and
Shuo Xu and
Xin An and
Utpal Kumar Sikdar and
Asif Ekbal and
Masaharu Yoshioka and
Thaer M. Dieb and
Miji Choi and
Karin Verspoor and
Madian Khabsa and
C. Lee Giles and
Hongfang Liu and
Ravikumar Komandur Elayavilli and
Andre Lamurias and
Francisco M. Couto and
Hong{-}Jie Dai and
Richard Tzong{-}Han Tsai and
Caglar Ata and
Tolga Can and
Anabel Usie and
Rui Alves and
Isabel Segura{-}Bedmar and
Paloma Mart{\'{\i}}nez and
Julen Oyarzabal and
Alfonso Valencia},
title = {The {CHEMDNER} corpus of chemicals and drugs and its annotation principles},
journal = {J. Cheminformatics},
volume = {7},
number = {{S-1}},
pages = {S2},
year = {2015},
url = {https://doi.org/10.1186/1758-2946-7-S1-S2},
doi = {10.1186/1758-2946-7-S1-S2},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcheminf/KrallingerRL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/LamuriasFC15,
author = {Andre Lamurias and
Jo{\~{a}}o D. Ferreira and
Francisco M. Couto},
title = {Improving chemical entity recognition through h-index based semantic
similarity},
journal = {J. Cheminformatics},
volume = {7},
number = {{S-1}},
pages = {S13},
year = {2015},
url = {https://doi.org/10.1186/1758-2946-7-S1-S13},
doi = {10.1186/1758-2946-7-S1-S13},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcheminf/LamuriasFC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/epia/BarataATTGC15,
author = {Carlos Barata and
M{\'{o}}nica Abreu and
Pedro Torres and
Jorge Teixeira and
Tiago Jo{\~{a}}o Guerreiro and
Francisco M. Couto},
editor = {Francisco C. Pereira and
Penousal Machado and
Ernesto Costa and
Am{\'{\i}}lcar Cardoso},
title = {Social Impact - Identifying Quotes of Literary Works in Social Networks},
booktitle = {Progress in Artificial Intelligence - 17th Portuguese Conference on
Artificial Intelligence, {EPIA} 2015, Coimbra, Portugal, September
8-11, 2015. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9273},
pages = {789--795},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23485-4\_79},
doi = {10.1007/978-3-319-23485-4\_79},
timestamp = {Wed, 25 Sep 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/epia/BarataATTGC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/LamuriasPCC15,
author = {Andre Lamurias and
Vasco Pedro and
Luka A. Clarke and
Francisco M. Couto},
editor = {Francisco M. Couto and
Janna Hastings},
title = {Annotating biomedical ontology terms in electronic health records
using crowd-sourcing},
booktitle = {Proceedings of the International Conference on Biomedical Ontology,
{ICBO} 2015, Lisbon, Portugal, July 27-30, 2015},
series = {{CEUR} Workshop Proceedings},
volume = {1515},
publisher = {CEUR-WS.org},
year = {2015},
url = {https://ceur-ws.org/Vol-1515/early1.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:24 +0100},
biburl = {https://dblp.org/rec/conf/icbo/LamuriasPCC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pkdd/LamuriasCC15,
author = {Andre Lamurias and
Luka A. Clarke and
Francisco M. Couto},
editor = {Albert Bifet and
Michael May and
Bianca Zadrozny and
Ricard Gavald{\`{a}} and
Dino Pedreschi and
Francesco Bonchi and
Jaime S. Cardoso and
Myra Spiliopoulou},
title = {{IICE:} Web Tool for Automatic Identification of Chemical Entities
and Interactions},
booktitle = {Machine Learning and Knowledge Discovery in Databases - European Conference,
{ECML} {PKDD} 2015, Porto, Portugal, September 7-11, 2015, Proceedings,
Part {III}},
series = {Lecture Notes in Computer Science},
volume = {9286},
pages = {285--288},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23461-8\_31},
doi = {10.1007/978-3-319-23461-8\_31},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/pkdd/LamuriasCC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/LealMC15,
author = {Andr{\'{e}} Leal and
Bruno Martins and
Francisco M. Couto},
editor = {Daniel M. Cer and
David Jurgens and
Preslav Nakov and
Torsten Zesch},
title = {ULisboa: Recognition and Normalization of Medical Concepts},
booktitle = {Proceedings of the 9th International Workshop on Semantic Evaluation,
SemEval@NAACL-HLT 2015, Denver, Colorado, USA, June 4-5, 2015},
pages = {406--411},
publisher = {The Association for Computer Linguistics},
year = {2015},
url = {https://doi.org/10.18653/v1/s15-2070},
doi = {10.18653/V1/S15-2070},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/semeval/LealMC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/FariaMNOSTPCC15,
author = {Daniel Faria and
Catarina Martins and
Amruta Nanavaty and
Daniela Oliveira and
Booma Sowkarthiga and
Aynaz Taheri and
Catia Pesquita and
Francisco M. Couto and
Isabel F. Cruz},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Michelle Cheatham and
Oktie Hassanzadeh},
title = {{AML} results for {OAEI} 2015},
booktitle = {Proceedings of the 10th International Workshop on Ontology Matching
collocated with the 14th International Semantic Web Conference {(ISWC}
2015), Bethlehem, PA, USA, October 12, 2015},
series = {{CEUR} Workshop Proceedings},
volume = {1545},
pages = {116--123},
publisher = {CEUR-WS.org},
year = {2015},
url = {https://ceur-ws.org/Vol-1545/oaei15\_paper1.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:04 +0100},
biburl = {https://dblp.org/rec/conf/semweb/FariaMNOSTPCC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wpes/CogoBCV15,
author = {Vinicius Vielmo Cogo and
Alysson Bessani and
Francisco M. Couto and
Paulo Ver{\'{\i}}ssimo},
editor = {Indrajit Ray and
Nicholas Hopper and
Rob Jansen},
title = {A High-Throughput Method to Detect Privacy-Sensitive Human Genomic
Data},
booktitle = {Proceedings of the 14th {ACM} Workshop on Privacy in the Electronic
Society, {WPES} 2015, Denver, Colorado, USA, October 12, 2015},
pages = {101--110},
publisher = {{ACM}},
year = {2015},
url = {https://doi.org/10.1145/2808138.2808139},
doi = {10.1145/2808138.2808139},
timestamp = {Wed, 17 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wpes/CogoBCV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/icbo/2015,
editor = {Francisco M. Couto and
Janna Hastings},
title = {Proceedings of the International Conference on Biomedical Ontology,
{ICBO} 2015, Lisbon, Portugal, July 27-30, 2015},
series = {{CEUR} Workshop Proceedings},
volume = {1515},
publisher = {CEUR-WS.org},
year = {2015},
url = {https://ceur-ws.org/Vol-1515},
urn = {urn:nbn:de:0074-1515-7},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/2015.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/PesquitaFCS14,
author = {Catia Pesquita and
Jo{\~{a}}o D. Ferreira and
Francisco M. Couto and
M{\'{a}}rio J. Silva},
title = {The epidemiology ontology: an ontology for the semantic annotation
of epidemiological resources},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {4},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-4},
doi = {10.1186/2041-1480-5-4},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/PesquitaFCS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LamuriasFC14,
author = {Andre Lamurias and
Jo{\~{a}}o D. Ferreira and
Francisco M. Couto},
title = {Identifying interactions between chemical entities in biomedical text},
journal = {J. Integr. Bioinform.},
volume = {11},
number = {3},
year = {2014},
url = {https://doi.org/10.2390/biecoll-jib-2014-247},
doi = {10.2390/BIECOLL-JIB-2014-247},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/LamuriasFC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jserd/CoutoVPHAB14,
author = {C{\'{e}}sar Couto and
Marco T{\'{u}}lio Valente and
Pedro Pires and
Andr{\'{e}} C. Hora and
Nicolas Anquetil and
Roberto S. Bigonha},
title = {BugMaps-Granger: a tool for visualizing and predicting bugs using
Granger causality tests},
journal = {J. Softw. Eng. Res. Dev.},
volume = {2},
pages = {1},
year = {2014},
url = {https://doi.org/10.1186/2195-1721-2-1},
doi = {10.1186/2195-1721-2-1},
timestamp = {Fri, 19 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jserd/CoutoVPHAB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jss/CoutoPVBA14,
author = {C{\'{e}}sar Couto and
Pedro Pires and
Marco T{\'{u}}lio Valente and
Roberto da Silva Bigonha and
Nicolas Anquetil},
title = {Predicting software defects with causality tests},
journal = {J. Syst. Softw.},
volume = {93},
pages = {24--41},
year = {2014},
url = {https://doi.org/10.1016/j.jss.2014.01.033},
doi = {10.1016/J.JSS.2014.01.033},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jss/CoutoPVBA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dils/PesquitaFSNC14,
author = {Catia Pesquita and
Daniel Faria and
Emanuel Santos and
Jean{-}Marc Neefs and
Francisco M. Couto},
editor = {Helena Galhardas and
Erhard Rahm},
title = {Towards Visualizing the Alignment of Large Biomedical Ontologies},
booktitle = {Data Integration in the Life Sciences - 10th International Conference,
{DILS} 2014, Lisbon, Portugal, July 17-18, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8574},
pages = {104--111},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-08590-6\_10},
doi = {10.1007/978-3-319-08590-6\_10},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/dils/PesquitaFSNC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccsa/CoutoRC14,
author = {Rui Couto and
Ant{\'{o}}nio Nestor Ribeiro and
Jos{\'{e}} Creissac Campos},
editor = {Beniamino Murgante and
Sanjay Misra and
Ana Maria A. C. Rocha and
Carmelo Maria Torre and
Jorge Gustavo Rocha and
Maria Irene Falc{\~{a}}o and
David Taniar and
Bernady O. Apduhan and
Osvaldo Gervasi},
title = {The Modelery: {A} Collaborative Web Based Repository},
booktitle = {Computational Science and Its Applications - {ICCSA} 2014 - 14th International
Conference, Guimar{\~{a}}es, Portugal, June 30 - July 3, 2014, Proceedings,
Part {VI}},
series = {Lecture Notes in Computer Science},
volume = {8584},
pages = {1--16},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-09153-2\_1},
doi = {10.1007/978-3-319-09153-2\_1},
timestamp = {Tue, 14 May 2019 10:00:43 +0200},
biburl = {https://dblp.org/rec/conf/iccsa/CoutoRC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pacbb/LamuriasFC14,
author = {Andre Lamurias and
Jo{\~{a}}o D. Ferreira and
Francisco M. Couto},
editor = {Julio Saez{-}Rodriguez and
Miguel P. Rocha and
Florentino Fdez{-}Riverola and
Juan F. De Paz Santana},
title = {Chemical Named Entity Recognition: Improving Recall Using a Comprehensive
List of Lexical Features},
booktitle = {8th International Conference on Practical Applications of Computational
Biology {\&} Bioinformatics, {PACBB} 2014, 4-6 June, 2014, Salamanca,
Spain},
series = {Advances in Intelligent Systems and Computing},
volume = {294},
pages = {253--260},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07581-5\_30},
doi = {10.1007/978-3-319-07581-5\_30},
timestamp = {Wed, 12 Oct 2022 08:58:54 +0200},
biburl = {https://dblp.org/rec/conf/pacbb/LamuriasFC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/quatic/CoutoRC14,
author = {Rui Couto and
Ant{\'{o}}nio Nestor Ribeiro and
Jos{\'{e}} Creissac Campos},
title = {A Study on the Viability of Formalizing Use Cases},
booktitle = {9th International Conference on the Quality of Information and Communications
Technology, {QUATIC} 2014, Guimaraes, Portugal, September 23-26, 2014},
pages = {130--133},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/QUATIC.2014.23},
doi = {10.1109/QUATIC.2014.23},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/quatic/CoutoRC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/LealGMC14,
author = {Andr{\'{e}} Leal and
Diogo Gon{\c{c}}alves and
Bruno Martins and
Francisco M. Couto},
editor = {Preslav Nakov and
Torsten Zesch},
title = {ULisboa: Identification and Classification of Medical Concepts},
booktitle = {Proceedings of the 8th International Workshop on Semantic Evaluation,
SemEval@COLING 2014, Dublin, Ireland, August 23-24, 2014},
pages = {711--715},
publisher = {The Association for Computer Linguistics},
year = {2014},
url = {https://doi.org/10.3115/v1/s14-2127},
doi = {10.3115/V1/S14-2127},
timestamp = {Tue, 15 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/semeval/LealGMC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/Couto14,
author = {Francisco M. Couto},
editor = {Fernando Bobillo and
Rommel N. Carvalho and
Davide Ceolin and
Paulo Cesar G. da Costa and
Claudia d'Amato and
Nicola Fanizzi and
Kathryn B. Laskey and
Kenneth J. Laskey and
Thomas Lukasiewicz and
Trevor P. Martin and
Matthias Nickles and
Michael Pool and
Tom De Nies and
Olaf Hartig and
Paul Groth and
Stephen Marsh},
title = {Rating, Recognizing and Rewarding Metadata Integration and Sharing
on the Semantic Web},
booktitle = {Proceedings of the 10th International Workshop on Uncertainty Reasoning
for the Semantic Web {(URSW} 2014) co-located with the 13th International
Semantic Web Conference {(ISWC} 2014), Riva del Garda, Italy, October
19, 2014},
series = {{CEUR} Workshop Proceedings},
volume = {1259},
pages = {67--72},
publisher = {CEUR-WS.org},
year = {2014},
url = {https://ceur-ws.org/Vol-1259/method2014\_submission\_2.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:07 +0100},
biburl = {https://dblp.org/rec/conf/semweb/Couto14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/FariaJPSC14,
author = {Daniel Faria and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Catia Pesquita and
Emanuel Santos and
Francisco M. Couto},
editor = {Peter Mika and
Tania Tudorache and
Abraham Bernstein and
Chris Welty and
Craig A. Knoblock and
Denny Vrandecic and
Paul Groth and
Natasha F. Noy and
Krzysztof Janowicz and
Carole A. Goble},
title = {Towards Annotating Potential Incoherences in BioPortal Mappings},
booktitle = {The Semantic Web - {ISWC} 2014 - 13th International Semantic Web Conference,
Riva del Garda, Italy, October 19-23, 2014. Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {8797},
pages = {17--32},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-11915-1\_2},
doi = {10.1007/978-3-319-11915-1\_2},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/semweb/FariaJPSC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/FariaMNTPSCC14,
author = {Daniel Faria and
Catarina Martins and
Amruta Nanavaty and
Aynaz Taheri and
Catia Pesquita and
Emanuel Santos and
Isabel F. Cruz and
Francisco M. Couto},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Ming Mao and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Juanzi Li and
Axel Ngonga},
title = {AgreementMakerLight results for {OAEI} 2014},
booktitle = {Proceedings of the 9th International Workshop on Ontology Matching
collocated with the 13th International Semantic Web Conference {(ISWC}
2014), Riva del Garda, Trentino, Italy, October 20, 2014},
series = {{CEUR} Workshop Proceedings},
volume = {1317},
pages = {105--112},
publisher = {CEUR-WS.org},
year = {2014},
url = {https://ceur-ws.org/Vol-1317/oaei14\_paper1.pdf},
timestamp = {Mon, 26 Jun 2023 20:39:38 +0200},
biburl = {https://dblp.org/rec/conf/semweb/FariaMNTPSCC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/FariaPSCC14,
author = {Daniel Faria and
Catia Pesquita and
Emanuel Santos and
Isabel F. Cruz and
Francisco M. Couto},
editor = {Matthew Horridge and
Marco Rospocher and
Jacco van Ossenbruggen},
title = {AgreementMakerLight 2.0: Towards Efficient Large-Scale Ontology Matching},
booktitle = {Proceedings of the {ISWC} 2014 Posters {\&} Demonstrations Track
a track within the 13th International Semantic Web Conference, {ISWC}
2014, Riva del Garda, Italy, October 21, 2014},
series = {{CEUR} Workshop Proceedings},
volume = {1272},
pages = {457--460},
publisher = {CEUR-WS.org},
year = {2014},
url = {https://ceur-ws.org/Vol-1272/paper\_151.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:04 +0100},
biburl = {https://dblp.org/rec/conf/semweb/FariaPSCC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/PesquitaCFBSC14,
author = {Catia Pesquita and
Michelle Cheatham and
Daniel Faria and
Joana Barros and
Emanuel Santos and
Francisco M. Couto},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Ming Mao and
Ernesto Jim{\'{e}}nez{-}Ruiz and
Juanzi Li and
Axel Ngonga},
title = {Building reference alignments for compound matching of multiple ontologies
using {OBO} cross-products},
booktitle = {Proceedings of the 9th International Workshop on Ontology Matching
collocated with the 13th International Semantic Web Conference {(ISWC}
2014), Riva del Garda, Trentino, Italy, October 20, 2014},
series = {{CEUR} Workshop Proceedings},
volume = {1317},
pages = {172--173},
publisher = {CEUR-WS.org},
year = {2014},
url = {https://ceur-ws.org/Vol-1317/om2014\_poster2.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/semweb/PesquitaCFBSC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sigir/CostaCS14,
author = {Miguel Costa and
Francisco M. Couto and
M{\'{a}}rio J. Silva},
editor = {Shlomo Geva and
Andrew Trotman and
Peter Bruza and
Charles L. A. Clarke and
Kalervo J{\"{a}}rvelin},
title = {Learning temporal-dependent ranking models},
booktitle = {The 37th International {ACM} {SIGIR} Conference on Research and Development
in Information Retrieval, {SIGIR} '14, Gold Coast , QLD, Australia
- July 06 - 11, 2014},
pages = {757--766},
publisher = {{ACM}},
year = {2014},
url = {https://doi.org/10.1145/2600428.2609619},
doi = {10.1145/2600428.2609619},
timestamp = {Tue, 06 Nov 2018 11:07:24 +0100},
biburl = {https://dblp.org/rec/conf/sigir/CostaCS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/w4a/MartinsCSDCCG14,
author = {Jo{\~{a}}o Martins and
Jos{\'{e}} Carilho and
Oliver Schnell and
Carlos Duarte and
Francisco M. Couto and
Lu{\'{\i}}s Carri{\c{c}}o and
Tiago Jo{\~{a}}o Guerreiro},
editor = {Jeffrey P. Bigham and
Yevgen Borodin and
Lu{\'{\i}}s Carri{\c{c}}o},
title = {Friendsourcing the unmet needs of people with dementia},
booktitle = {International Web for All Conference, {W4A} '14, Seoul, Republic of
Korea, April 7-9, 2014},
pages = {35:1--35:4},
publisher = {{ACM}},
year = {2014},
url = {https://doi.org/10.1145/2596695.2596716},
doi = {10.1145/2596695.2596716},
timestamp = {Wed, 25 Sep 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/w4a/MartinsCSDCCG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/corr/CoutoRC14,
author = {Rui Couto and
Ant{\'{o}}nio Nestor Ribeiro and
Jos{\'{e}} Creissac Campos},
editor = {Barbora Buhnova and
Lucia Happe and
Jan Kofron},
title = {Application of Ontologies in Identifying Requirements Patterns in
Use Cases},
booktitle = {Proceedings 11th International Workshop on Formal Engineering approaches
to Software Components and Architectures, {FESCA} 2014, Grenoble,
France, 12th April 2014},
series = {{EPTCS}},
volume = {147},
pages = {62--76},
year = {2014},
url = {https://doi.org/10.4204/EPTCS.147.5},
doi = {10.4204/EPTCS.147.5},
timestamp = {Mon, 18 Mar 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/CoutoRC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/ndltd/Couto13,
author = {C{\'{e}}sar Francisco de Moura Couto},
title = {Predicting software defects with causality tests (Predizendo defeitos
de software com testes de causalidade)},
school = {Federal University of Minas Gerais, Belo Horizonte, Brazil},
year = {2013},
url = {https://hdl.handle.net/1843/ESBF-9GMMLN},
timestamp = {Wed, 04 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/ndltd/Couto13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FerreiraHC13,
author = {Jo{\~{a}}o D. Ferreira and
Janna Hastings and
Francisco M. Couto},
title = {Exploiting disjointness axioms to improve semantic similarity measures},
journal = {Bioinform.},
volume = {29},
number = {21},
pages = {2781--2787},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt491},
doi = {10.1093/BIOINFORMATICS/BTT491},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FerreiraHC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/MachadoFC13,
author = {Catia M. Machado and
Ana T. Freitas and
Francisco M. Couto},
title = {Enrichment analysis applied to disease prognosis},
journal = {J. Biomed. Semant.},
volume = {4},
pages = {21},
year = {2013},
url = {https://doi.org/10.1186/2041-1480-4-21},
doi = {10.1186/2041-1480-4-21},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/MachadoFC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/CoutoP13,
author = {Francisco M. Couto and
Helena Sofia Pinto},
title = {The Next Generation of Similarity Measures that Fully Explore the
Semantics in Biomedical Ontologies},
journal = {J. Bioinform. Comput. Biol.},
volume = {11},
number = {5},
year = {2013},
url = {https://doi.org/10.1142/S0219720013710017},
doi = {10.1142/S0219720013710017},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/CoutoP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/program/MoreiraBCCS13,
author = {Silvio Moreira and
David S. Batista and
Paula Carvalho and
Francisco M. Couto and
M{\'{a}}rio J. Silva},
title = {Tracking politics with {POWER}},
journal = {Program},
volume = {47},
number = {2},
pages = {120--135},
year = {2013},
url = {https://doi.org/10.1108/00330331311313708},
doi = {10.1108/00330331311313708},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/program/MoreiraBCCS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigsoft/CoutoMGV13,
author = {C{\'{e}}sar Couto and
Cristiano Amaral Maffort and
Rogel Garcia and
Marco T{\'{u}}lio Valente},
title = {{COMETS:} a dataset for empirical research on software evolution using
source code metrics and time series analysis},
journal = {{ACM} {SIGSOFT} Softw. Eng. Notes},
volume = {38},
number = {1},
pages = {1--3},
year = {2013},
url = {https://doi.org/10.1145/2413038.2413047},
doi = {10.1145/2413038.2413047},
timestamp = {Fri, 19 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sigsoft/CoutoMGV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sqj/CoutoMSV13,
author = {C{\'{e}}sar Couto and
Jo{\~{a}}o Eduardo Montandon and
Christofer Silva and
Marco T{\'{u}}lio Valente},
title = {Static correspondence and correlation between field defects and warnings
reported by a bug finding tool},
journal = {Softw. Qual. J.},
volume = {21},
number = {2},
pages = {241--257},
year = {2013},
url = {https://doi.org/10.1007/s11219-011-9172-5},
doi = {10.1007/S11219-011-9172-5},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/sqj/CoutoMSV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sqj/RochaCMGSPV13,
author = {Henrique Rocha and
C{\'{e}}sar Couto and
Cristiano Amaral Maffort and
Rogel Garcia and
Clarisse Sim{\~{o}}es and
Leonardo Teixeira Passos and
Marco T{\'{u}}lio Valente},
title = {Mining the impact of evolution categories on object-oriented metrics},
journal = {Softw. Qual. J.},
volume = {21},
number = {4},
pages = {529--549},
year = {2013},
url = {https://doi.org/10.1007/s11219-012-9186-7},
doi = {10.1007/S11219-012-9186-7},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/sqj/RochaCMGSPV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipres/FerreiraPCS13,
author = {Jo{\~{a}}o D. Ferreira and
Catia Pesquita and
Francisco M. Couto and
M{\'{a}}rio J. Silva},
editor = {Jos{\'{e}} Borbinha and
Michael Nelson and
Steve Knight},
title = {Digital preservation of epidemic resources: coupling metadata and
ontologies},
booktitle = {Proceedings of the 10th International Conference on Digital Preservation,
iPRES 2013, Lisbon, Portugal, September 2 - 6, 2013},
year = {2013},
url = {https://hdl.handle.net/11353/10.378034},
timestamp = {Wed, 04 May 2022 13:02:20 +0200},
biburl = {https://dblp.org/rec/conf/ipres/FerreiraPCS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/otm/FariaPSPCC13,
author = {Daniel Faria and
Catia Pesquita and
Emanuel Santos and
Matteo Palmonari and
Isabel F. Cruz and
Francisco M. Couto},
editor = {Robert Meersman and
Herv{\'{e}} Panetto and
Tharam S. Dillon and
Johann Eder and
Zohra Bellahsene and
Norbert Ritter and
Pieter De Leenheer and
Dejing Dou},
title = {The AgreementMakerLight Ontology Matching System},
booktitle = {On the Move to Meaningful Internet Systems: {OTM} 2013 Conferences
- Confederated International Conferences: CoopIS, DOA-Trusted Cloud,
and {ODBASE} 2013, Graz, Austria, September 9-13, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8185},
pages = {527--541},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-41030-7\_38},
doi = {10.1007/978-3-642-41030-7\_38},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/otm/FariaPSPCC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/GregoPC13,
author = {Tiago Grego and
Francisco R. Pinto and
Francisco M. Couto},
editor = {Mona T. Diab and
Timothy Baldwin and
Marco Baroni},
title = {{LASIGE:} using Conditional Random Fields and ChEBI ontology},
booktitle = {Proceedings of the 7th International Workshop on Semantic Evaluation,
SemEval@NAACL-HLT 2013, Atlanta, Georgia, USA, June 14-15, 2013},
pages = {660--666},
publisher = {The Association for Computer Linguistics},
year = {2013},
url = {https://aclanthology.org/S13-2109/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/semeval/GregoPC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/MoreiraFMCS13,
author = {Silvio Moreira and
Jo{\~{a}}o Filgueiras and
Bruno Martins and
Francisco M. Couto and
M{\'{a}}rio J. Silva},
editor = {Mona T. Diab and
Timothy Baldwin and
Marco Baroni},
title = {{REACTION:} {A} naive machine learning approach for sentiment classification},
booktitle = {Proceedings of the 7th International Workshop on Semantic Evaluation,
SemEval@NAACL-HLT 2013, Atlanta, Georgia, USA, June 14-15, 2013},
pages = {490--494},
publisher = {The Association for Computer Linguistics},
year = {2013},
url = {https://aclanthology.org/S13-2081/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/semeval/MoreiraFMCS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/FariaPSCC13,
author = {Daniel Faria and
Catia Pesquita and
Emanuel Santos and
Isabel F. Cruz and
Francisco M. Couto},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Kavitha Srinivas and
Ming Mao and
Ernesto Jim{\'{e}}nez{-}Ruiz},
title = {AgreementMakerLight results for {OAEI} 2013},
booktitle = {Proceedings of the 8th International Workshop on Ontology Matching
co-located with the 12th International Semantic Web Conference {(ISWC}
2013), Sydney, Australia, October 21, 2013},
series = {{CEUR} Workshop Proceedings},
volume = {1111},
pages = {101--108},
publisher = {CEUR-WS.org},
year = {2013},
url = {https://ceur-ws.org/Vol-1111/oaei13\_paper1.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:09 +0100},
biburl = {https://dblp.org/rec/conf/semweb/FariaPSCC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/PesquitaFSC13,
author = {Catia Pesquita and
Daniel Faria and
Emanuel Santos and
Francisco M. Couto},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Kavitha Srinivas and
Ming Mao and
Ernesto Jim{\'{e}}nez{-}Ruiz},
title = {To repair or not to repair: reconciling correctness and coherence
in ontology reference alignments},
booktitle = {Proceedings of the 8th International Workshop on Ontology Matching
co-located with the 12th International Semantic Web Conference {(ISWC}
2013), Sydney, Australia, October 21, 2013},
series = {{CEUR} Workshop Proceedings},
volume = {1111},
pages = {13--24},
publisher = {CEUR-WS.org},
year = {2013},
url = {https://ceur-ws.org/Vol-1111/om2013\_Tpaper2.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/semweb/PesquitaFSC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/PesquitaFSSCC13,
author = {Catia Pesquita and
Daniel Faria and
Cosmin Stroe and
Emanuel Santos and
Isabel F. Cruz and
Francisco M. Couto},
editor = {Harith Alani and
Lalana Kagal and
Achille Fokoue and
Paul Groth and
Chris Biemann and
Josiane Xavier Parreira and
Lora Aroyo and
Natasha F. Noy and
Chris Welty and
Krzysztof Janowicz},
title = {What's in a 'nym'? Synonyms in Biomedical Ontology Matching},
booktitle = {The Semantic Web - {ISWC} 2013 - 12th International Semantic Web Conference,
Sydney, NSW, Australia, October 21-25, 2013, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {8218},
pages = {526--541},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-41335-3\_33},
doi = {10.1007/978-3-642-41335-3\_33},
timestamp = {Sun, 06 Oct 2024 21:14:04 +0200},
biburl = {https://dblp.org/rec/conf/semweb/PesquitaFSSCC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/www/CostaGCS13,
author = {Miguel Costa and
Daniel Gomes and
Francisco M. Couto and
M{\'{a}}rio J. Silva},
editor = {Leslie Carr and
Alberto H. F. Laender and
Bernadette Farias L{\'{o}}scio and
Irwin King and
Marcus Fontoura and
Denny Vrandecic and
Lora Aroyo and
Jos{\'{e}} Palazzo M. de Oliveira and
Fernanda Lima and
Erik Wilde},
title = {A survey of web archive search architectures},
booktitle = {22nd International World Wide Web Conference, {WWW} '13, Rio de Janeiro,
Brazil, May 13-17, 2013, Companion Volume},
pages = {1045--1050},
publisher = {International World Wide Web Conferences Steering Committee / {ACM}},
year = {2013},
url = {https://doi.org/10.1145/2487788.2488116},
doi = {10.1145/2487788.2488116},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/www/CostaGCS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/Couto13,
author = {Francisco M. Couto},
title = {{CIDS} country rankings: comparing documents and citations of USA,
{UK} and China top researchers},
journal = {CoRR},
volume = {abs/1310.5597},
year = {2013},
url = {http://arxiv.org/abs/1310.5597},
eprinttype = {arXiv},
eprint = {1310.5597},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/Couto13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/SantosFPC13,
author = {Emanuel Santos and
Daniel Faria and
Catia Pesquita and
Francisco M. Couto},
title = {Ontology alignment repair through modularization and confidence-based
heuristics},
journal = {CoRR},
volume = {abs/1307.5322},
year = {2013},
url = {http://arxiv.org/abs/1307.5322},
eprinttype = {arXiv},
eprint = {1307.5322},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/SantosFPC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1302-0420,
author = {Francisco M. Couto and
Daniel Faria and
Bruno Tavares and
Pedro Gon{\c{c}}alves and
Paulo Ver{\'{\i}}ssimo},
title = {Benchmarking some Portuguese S{\&}T system research units},
journal = {CoRR},
volume = {abs/1302.0420},
year = {2013},
url = {http://arxiv.org/abs/1302.0420},
eprinttype = {arXiv},
eprint = {1302.0420},
timestamp = {Tue, 28 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1302-0420.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/PesquitaC12,
author = {Catia Pesquita and
Francisco M. Couto},
title = {Predicting the Extension of Biomedical Ontologies},
journal = {PLoS Comput. Biol.},
volume = {8},
number = {9},
year = {2012},
url = {https://doi.org/10.1371/journal.pcbi.1002630},
doi = {10.1371/JOURNAL.PCBI.1002630},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/PesquitaC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csmr/CoutoSVBA12,
author = {C{\'{e}}sar Couto and
Christofer Silva and
Marco T{\'{u}}lio Valente and
Roberto da Silva Bigonha and
Nicolas Anquetil},
editor = {Tom Mens and
Anthony Cleve and
Rudolf Ferenc},
title = {Uncovering Causal Relationships between Software Metrics and Bugs},
booktitle = {16th European Conference on Software Maintenance and Reengineering,
{CSMR} 2012, Szeged, Hungary, March 27-30, 2012},
pages = {223--232},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/CSMR.2012.31},
doi = {10.1109/CSMR.2012.31},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csmr/CoutoSVBA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csmr/HoraADBCVM12,
author = {Andr{\'{e}} C. Hora and
Nicolas Anquetil and
St{\'{e}}phane Ducasse and
Muhammad Usman Bhatti and
C{\'{e}}sar Couto and
Marco T{\'{u}}lio Valente and
Julio Martins},
editor = {Tom Mens and
Anthony Cleve and
Rudolf Ferenc},
title = {Bug Maps: {A} Tool for the Visual Exploration and Analysis of Bugs},
booktitle = {16th European Conference on Software Maintenance and Reengineering,
{CSMR} 2012, Szeged, Hungary, March 27-30, 2012},
pages = {523--526},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/CSMR.2012.68},
doi = {10.1109/CSMR.2012.68},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csmr/HoraADBCVM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/CoutoFZSPGDS12,
author = {Francisco M. Couto and
Jo{\~{a}}o D. Ferreira and
Jo{\~{a}}o Zamite and
Carlos Santos and
Tiago Posse and
Paulo M. L. A. Gra{\c{c}}a and
Dulce Domingos and
M{\'{a}}rio J. Silva},
editor = {Ronald Cornet and
Robert Stevens},
title = {The Epidemic Marketplace Platform: towards semantic characterization
of epidemiological resources using biomedical ontologies},
booktitle = {Proceedings of the 3rd International Conference on Biomedical Ontology
{(ICBO} 2012), {KR-MED} Series, Graz, Austria, July 21-25, 2012},
series = {{CEUR} Workshop Proceedings},
volume = {897},
publisher = {CEUR-WS.org},
year = {2012},
url = {https://ceur-ws.org/Vol-897/demo\_1.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:23 +0100},
biburl = {https://dblp.org/rec/conf/icbo/CoutoFZSPGDS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/FerreiraPCS12,
author = {Jo{\~{a}}o D. Ferreira and
Catia Pesquita and
Francisco M. Couto and
M{\'{a}}rio J. Silva},
editor = {Ronald Cornet and
Robert Stevens},
title = {Bringing epidemiology into the Semantic Web},
booktitle = {Proceedings of the 3rd International Conference on Biomedical Ontology
{(ICBO} 2012), {KR-MED} Series, Graz, Austria, July 21-25, 2012},
series = {{CEUR} Workshop Proceedings},
volume = {897},
publisher = {CEUR-WS.org},
year = {2012},
url = {https://ceur-ws.org/Vol-897/session1-paper02.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/FerreiraPCS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/GregoPC12,
author = {Tiago Grego and
Francisco R. Pinto and
Francisco M. Couto},
editor = {Ronald Cornet and
Robert Stevens},
title = {Identifying Chemical Entities based on ChEBI},
booktitle = {Proceedings of the 3rd International Conference on Biomedical Ontology
{(ICBO} 2012), {KR-MED} Series, Graz, Austria, July 21-25, 2012},
series = {{CEUR} Workshop Proceedings},
volume = {897},
publisher = {CEUR-WS.org},
year = {2012},
url = {https://ceur-ws.org/Vol-897/demo\_8.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/GregoPC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iceis/CansadoVS12,
author = {Francisco Cansado and
Andr{\'{e}} Vasconcelos and
Gon{\c{c}}alo Santos},
editor = {Leszek A. Maciaszek and
Alfredo Cuzzocrea and
Jos{\'{e}} Cordeiro},
title = {Using Multi-criteria Analysis to Evaluate Enterprise Architecture
Scenarios},
booktitle = {{ICEIS} 2012 - Proceedings of the 14th International Conference on
Enterprise Information Systems, Volume 3, Wroclaw, Poland, 28 June
- 1 July, 2012},
pages = {232--237},
publisher = {SciTePress},
year = {2012},
timestamp = {Tue, 01 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iceis/CansadoVS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/itbam/MachadoCFSF12,
author = {Catia M. Machado and
Francisco M. Couto and
Alexandra R. Fernandes and
Susana Santos and
Ana T. Freitas},
editor = {Christian B{\"{o}}hm and
Sami Khuri and
Lenka Lhotsk{\'{a}} and
M. Elena Renda},
title = {Toward a Translational Medicine Approach for Hypertrophic Cardiomyopathy},
booktitle = {Information Technology in Bio- and Medical Informatics - Third International
Conference, {ITBAM} 2012, Vienna, Austria, September 4-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7451},
pages = {151--165},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-32395-9\_12},
doi = {10.1007/978-3-642-32395-9\_12},
timestamp = {Tue, 30 Jan 2024 13:00:56 +0100},
biburl = {https://dblp.org/rec/conf/itbam/MachadoCFSF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mompes/CoutoRC12,
author = {Rui Couto and
Ant{\'{o}}nio Nestor Ribeiro and
Jos{\'{e}} Creissac Campos},
editor = {Ricardo Jorge Machado and
Rita Suzana Pitangueira Maciel and
Julia Rubin and
Goetz Botterweck},
title = {MapIt: {A} Model Based Pattern Recovery Tool},
booktitle = {Model-Based Methodologies for Pervasive and Embedded Software, 8th
International Workshop, {MOMPES} 2012, Essen, Germany, September 4,
2012. Revised Papers},
series = {Lecture Notes in Computer Science},
volume = {7706},
pages = {19--37},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-38209-3\_2},
doi = {10.1007/978-3-642-38209-3\_2},
timestamp = {Wed, 09 Aug 2023 08:39:51 +0200},
biburl = {https://dblp.org/rec/conf/mompes/CoutoRC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/propor/BatistaFCS12,
author = {David S. Batista and
Jo{\~{a}}o D. Ferreira and
Francisco M. Couto and
M{\'{a}}rio J. Silva},
editor = {Helena de Medeiros Caseli and
Aline Villavicencio and
Ant{\'{o}}nio J. S. Teixeira and
Fernando Perdig{\~{a}}o},
title = {Toponym Disambiguation Using Ontology-Based Semantic Similarity},
booktitle = {Computational Processing of the Portuguese Language - 10th International
Conference, {PROPOR} 2012, Coimbra, Portugal, April 17-20, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7243},
pages = {179--185},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-28885-2\_20},
doi = {10.1007/978-3-642-28885-2\_20},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/propor/BatistaFCS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sew/CoutoRC12,
author = {Rui Couto and
Ant{\'{o}}nio Nestor Ribeiro and
Jos{\'{e}} Creissac Campos},
editor = {Jonathan P. Bowen and
Huibiao Zhu and
Mike Hinchey},
title = {A Patterns Based Reverse Engineering Approach for Java Source Code},
booktitle = {35th Annual {IEEE} Software Engineering Workshop, {SEW} 2012, Heraclion,
Crete, Greece, October 12-13, 2012},
pages = {140--147},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/SEW.2012.21},
doi = {10.1109/SEW.2012.21},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sew/CoutoRC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1212-1625,
author = {Daniel Faria and
Catia Pesquita and
Emanuel Santos and
Francisco M. Couto and
Cosmin Stroe and
Isabel F. Cruz},
title = {Testing the AgreementMaker System in the Anatomy Task of {OAEI} 2012},
journal = {CoRR},
volume = {abs/1212.1625},
year = {2012},
url = {http://arxiv.org/abs/1212.1625},
eprinttype = {arXiv},
eprint = {1212.1625},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1212-1625.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/CoutoS11,
author = {Francisco M. Couto and
M{\'{a}}rio J. Silva},
title = {Disjunctive shared information between ontology concepts: application
to Gene Ontology},
journal = {J. Biomed. Semant.},
volume = {2},
pages = {5},
year = {2011},
url = {https://doi.org/10.1186/2041-1480-2-5},
doi = {10.1186/2041-1480-2-5},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/CoutoS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tlsdkcs/ZamiteSCS11,
author = {Jo{\~{a}}o Zamite and
Fabr{\'{\i}}cio A. B. da Silva and
Francisco M. Couto and
M{\'{a}}rio J. Silva},
title = {MEDCollector: Multisource Epidemic Data Collector},
journal = {Trans. Large Scale Data Knowl. Centered Syst.},
volume = {4},
pages = {40--72},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23740-9\_3},
doi = {10.1007/978-3-642-23740-9\_3},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tlsdkcs/ZamiteSCS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/CruzSPCC11,
author = {Isabel F. Cruz and
Cosmin Stroe and
Catia Pesquita and
Francisco M. Couto and
Valerie Cross},
editor = {Olivier Bodenreider and
Maryann E. Martone and
Alan Ruttenberg},
title = {Biomedical Ontology Matching Using the AgreementMaker System},
booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology,
Buffalo, NY, USA, July 26-30, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {833},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-833/paper51.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:24 +0100},
biburl = {https://dblp.org/rec/conf/icbo/CruzSPCC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/FerreiraC11,
author = {Jo{\~{a}}o D. Ferreira and
Francisco M. Couto},
editor = {Olivier Bodenreider and
Maryann E. Martone and
Alan Ruttenberg},
title = {Generic Semantic Relatedness Measure for Biomedical Ontologies},
booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology,
Buffalo, NY, USA, July 26-30, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {833},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-833/paper16.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/FerreiraC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/PesquitaC11,
author = {Catia Pesquita and
Francisco M. Couto},
editor = {Olivier Bodenreider and
Maryann E. Martone and
Alan Ruttenberg},
title = {Where {GO} is Going and What it Means for Ontology Extension},
booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology,
Buffalo, NY, USA, July 26-30, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {833},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-833/paper1.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/PesquitaC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/TavaresBFFGPC11,
author = {Bruno Tavares and
Hugo P. Bastos and
Daniel Faria and
Jo{\~{a}}o D. Ferreira and
Tiago Grego and
Catia Pesquita and
Francisco M. Couto},
editor = {Olivier Bodenreider and
Maryann E. Martone and
Alan Ruttenberg},
title = {The Biomedical Ontology Applications {(BOA)} Framework},
booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology,
Buffalo, NY, USA, July 26-30, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {833},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-833/paper56.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/TavaresBFFGPC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sbqs/CoutoVB11,
author = {C{\'{e}}sar Couto and
Marco T{\'{u}}lio Valente and
Roberto da Silva Bigonha},
editor = {Carla Alessandra Lima Reis and
Tayana Uch{\^{o}}a Conte},
title = {Avalia{\c{c}}{\~{a}}o de Causalidade entre M{\'{e}}tricas de
Qualidade Interna e Defeitos},
booktitle = {Proceedings of the 10th Brazilian Symposium on Software Quality, {SBQS}
2011, Curitiba, PR, Brazil, June 6-10, 2011},
pages = {279--293},
publisher = {{SBC}},
year = {2011},
url = {https://doi.org/10.5753/sbqs.2011.15401},
doi = {10.5753/SBQS.2011.15401},
timestamp = {Fri, 19 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sbqs/CoutoVB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/CruzSCFPCP11,
author = {Isabel F. Cruz and
Cosmin Stroe and
Federico Caimi and
Alessio Fabiani and
Catia Pesquita and
Francisco M. Couto and
Matteo Palmonari},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Tom Heath and
Christoph Quix and
Ming Mao and
Isabel F. Cruz},
title = {Using AgreementMaker to align ontologies for {OAEI} 2011},
booktitle = {Proceedings of the 6th International Workshop on Ontology Matching,
Bonn, Germany, October 24, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {814},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-814/oaei11\_paper1.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:04 +0100},
biburl = {https://dblp.org/rec/conf/semweb/CruzSCFPCP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/tac/BatistaMSCC11,
author = {David S. Batista and
Silvio Moreira and
M{\'{a}}rio J. Silva and
Paula Carvalho and
Francisco M. Couto},
title = {{REACTION} at the Entity Linking task in {KBP} 2011},
booktitle = {Proceedings of the Fourth Text Analysis Conference, {TAC} 2011, Gaithersburg,
Maryland, USA, November 14-15, 2011},
publisher = {{NIST}},
year = {2011},
url = {https://tac.nist.gov/publications/2011/participant.papers/REACTION.proceedings.pdf},
timestamp = {Tue, 25 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/tac/BatistaMSCC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcs/ValenteCFS10,
author = {Marco T{\'{u}}lio Valente and
C{\'{e}}sar Couto and
Jaqueline Faria and
S{\'{e}}rgio Soares},
title = {On the benefits of quantification in AspectJ systems},
journal = {J. Braz. Comput. Soc.},
volume = {16},
number = {2},
pages = {133--146},
year = {2010},
url = {https://doi.org/10.1007/s13173-010-0008-0},
doi = {10.1007/S13173-010-0008-0},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcs/ValenteCFS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/FerreiraC10,
author = {Jo{\~{a}}o D. Ferreira and
Francisco M. Couto},
title = {Semantic Similarity for Automatic Classification of Chemical Compounds},
journal = {PLoS Comput. Biol.},
volume = {6},
number = {9},
year = {2010},
url = {https://doi.org/10.1371/journal.pcbi.1000937},
doi = {10.1371/JOURNAL.PCBI.1000937},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/FerreiraC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/MachadoCFSCF10,
author = {Catia M. Machado and
Francisco M. Couto and
Alexandra R. Fernandes and
Susana Santos and
Nuno Cardim and
Ana T. Freitas},
title = {Semantic characterization of hypertrophic cardiomyopathy disease},
booktitle = {2010 {IEEE} International Conference on Bioinformatics and Biomedicine
Workshops, {BIBMW} 2010, Hong Kong, December 18, 2010},
pages = {432--439},
publisher = {{IEEE}},
year = {2010},
url = {https://doi.org/10.1109/BIBMW.2010.5703841},
doi = {10.1109/BIBMW.2010.5703841},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/MachadoCFSCF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gir/BatistaSCB10,
author = {David S. Batista and
M{\'{a}}rio J. Silva and
Francisco M. Couto and
Bibek Behera},
editor = {Ross Purves and
Paul D. Clough and
Christopher B. Jones},
title = {Geographic signatures for semantic retrieval},
booktitle = {Proceedings of the 6th Workshop on Geographic Information Retrieval,
{GIR} 2010, Zurich, Switzerland, February 18-19, 2010},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1722080.1722104},
doi = {10.1145/1722080.1722104},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gir/BatistaSCB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/itbam/LopesSCZFSS10,
author = {Luis F. Lopes and
Fabr{\'{\i}}cio A. B. da Silva and
Francisco M. Couto and
Jo{\~{a}}o Zamite and
Hugo Alexandre Ferreira and
Carla Sousa and
M{\'{a}}rio J. Silva},
editor = {Sami Khuri and
Lenka Lhotsk{\'{a}} and
Nadia Pisanti},
title = {Epidemic Marketplace: An Information Management System for Epidemiological
Data},
booktitle = {Information Technology in Bio- and Medical Informatics, {ITBAM} 2010,
First International Conference, Bilbao, Spain, September 1-2, 2010.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6266},
pages = {31--44},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15020-3\_3},
doi = {10.1007/978-3-642-15020-3\_3},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/itbam/LopesSCZFSS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/itbam/ZamiteSCS10,
author = {Jo{\~{a}}o Zamite and
Fabr{\'{\i}}cio A. B. da Silva and
Francisco M. Couto and
M{\'{a}}rio J. Silva},
editor = {Sami Khuri and
Lenka Lhotsk{\'{a}} and
Nadia Pisanti},
title = {MEDCollector: Multisource Epidemic Data Collector},
booktitle = {Information Technology in Bio- and Medical Informatics, {ITBAM} 2010,
First International Conference, Bilbao, Spain, September 1-2, 2010.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6266},
pages = {16--30},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15020-3\_2},
doi = {10.1007/978-3-642-15020-3\_2},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/itbam/ZamiteSCS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sbqs/FilhoCSV10,
author = {Jo{\~{a}}o Eduardo de Ara{\'{u}}jo Filho and
C{\'{e}}sar Francisco de Moura Couto and
S{\'{\i}}lvio Jos{\'{e}} de Souza and
Marco T{\'{u}}lio Valente},
editor = {Carlos Alberto Marques Pietrobon and
Ana Liddy Cenni de Castro Magalh{\~{a}}es},
title = {Um Estudo sobre a Correla{\c{c}}{\~{a}}o entre Defeitos de Campo e
Warnings Reportados por uma Ferramenta de {\'{A}}nalise Est{\'{a}}tica},
booktitle = {Proceedings of the 9th Brazilian Symposium on Software Quality, {SBQS}
2010, Bel{\'{e}}m, PA, Brazil, June 7-11, 2010},
pages = {9--23},
publisher = {{SBC}},
year = {2010},
url = {https://doi.org/10.5753/sbqs.2010.15418},
doi = {10.5753/SBQS.2010.15418},
timestamp = {Fri, 19 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sbqs/FilhoCSV10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/PesquitaSCC10,
author = {Catia Pesquita and
Cosmin Stroe and
Isabel F. Cruz and
Francisco M. Couto},
editor = {Pavel Shvaiko and
J{\'{e}}r{\^{o}}me Euzenat and
Fausto Giunchiglia and
Heiner Stuckenschmidt and
Ming Mao and
Isabel F. Cruz},
title = {{BLOOMS} on AgreementMaker: results for {OAEI} 2010},
booktitle = {Proceedings of the 5th International Workshop on Ontology Matching
(OM-2010), Shanghai, China, November 7, 2010},
series = {{CEUR} Workshop Proceedings},
volume = {689},
publisher = {CEUR-WS.org},
year = {2010},
url = {https://ceur-ws.org/Vol-689/oaei10\_paper3.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:03 +0100},
biburl = {https://dblp.org/rec/conf/semweb/PesquitaSCC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ercim/MachadoCFSCF10,
author = {Catia M. Machado and
Francisco M. Couto and
Alexandra R. Fernandes and
Susana Santos and
Nuno Cardim and
Ana T. Freitas},
title = {Unraveling Hypertrophic Cardiomyopathy Variability},
journal = {{ERCIM} News},
volume = {2010},
number = {82},
pages = {48--49},
year = {2010},
url = {http://ercim-news.ercim.eu/en82/special/unraveling-hypertrophic-cardiomyopathy-variability},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ercim/MachadoCFSCF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ercim/SilvaSC10,
author = {Fabr{\'{\i}}cio A. B. da Silva and
M{\'{a}}rio J. Silva and
Francisco M. Couto},
title = {Epidemic Marketplace: An e-Science Platform for Epidemic Modelling
and Analysis},
journal = {{ERCIM} News},
volume = {2010},
number = {82},
pages = {43--44},
year = {2010},
url = {http://ercim-news.ercim.eu/en82/special/epidemic-marketplace-an-e-science-platform-for-epidemic-modelling-and-analysis},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ercim/SilvaSC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/PesquitaFFLC09,
author = {Catia Pesquita and
Daniel Faria and
Andr{\'{e}} O. Falc{\~{a}}o and
Phillip W. Lord and
Francisco M. Couto},
title = {Semantic Similarity in Biomedical Ontologies},
journal = {PLoS Comput. Biol.},
volume = {5},
number = {7},
year = {2009},
url = {https://doi.org/10.1371/journal.pcbi.1000443},
doi = {10.1371/JOURNAL.PCBI.1000443},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/PesquitaFFLC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwann/GregoPCR09,
author = {Tiago Grego and
Piotr Pezik and
Francisco M. Couto and
Dietrich Rebholz{-}Schuhmann},
editor = {Sigeru Omatu and
Miguel Rocha and
Jos{\'{e}} Bravo and
Florentino Fern{\'{a}}ndez Riverola and
Emilio Corchado and
Andr{\'{e}}s Bustillo and
Juan M. Corchado},
title = {Identification of Chemical Entities in Patent Documents},
booktitle = {Distributed Computing, Artificial Intelligence, Bioinformatics, Soft
Computing, and Ambient Assisted Living, 10th International Work-Conference
on Artificial Neural Networks, {IWANN} 2009 Workshops, Salamanca,
Spain, June 10-12, 2009. Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {5518},
pages = {942--949},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02481-8\_144},
doi = {10.1007/978-3-642-02481-8\_144},
timestamp = {Tue, 15 Nov 2022 15:22:37 +0100},
biburl = {https://dblp.org/rec/conf/iwann/GregoPCR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwann/MachadoBC09,
author = {Catia M. Machado and
Hugo P. Bastos and
Francisco M. Couto},
editor = {Sigeru Omatu and
Miguel Rocha and
Jos{\'{e}} Bravo and
Florentino Fern{\'{a}}ndez Riverola and
Emilio Corchado and
Andr{\'{e}}s Bustillo and
Juan M. Corchado},
title = {{GREAT:} Gene Regulation EvAluation Tool},
booktitle = {Distributed Computing, Artificial Intelligence, Bioinformatics, Soft
Computing, and Ambient Assisted Living, 10th International Work-Conference
on Artificial Neural Networks, {IWANN} 2009 Workshops, Salamanca,
Spain, June 10-12, 2009. Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {5518},
pages = {930--933},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02481-8\_142},
doi = {10.1007/978-3-642-02481-8\_142},
timestamp = {Sun, 04 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iwann/MachadoBC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwann/PesquitaGC09,
author = {Catia Pesquita and
Tiago Grego and
Francisco M. Couto},
editor = {Sigeru Omatu and
Miguel Rocha and
Jos{\'{e}} Bravo and
Florentino Fern{\'{a}}ndez Riverola and
Emilio Corchado and
Andr{\'{e}}s Bustillo and
Juan M. Corchado},
title = {Identifying Gene Ontology Areas for Automated Enrichment},
booktitle = {Distributed Computing, Artificial Intelligence, Bioinformatics, Soft
Computing, and Ambient Assisted Living, 10th International Work-Conference
on Artificial Neural Networks, {IWANN} 2009 Workshops, Salamanca,
Spain, June 10-12, 2009. Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {5518},
pages = {934--941},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02481-8\_143},
doi = {10.1007/978-3-642-02481-8\_143},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iwann/PesquitaGC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sac/PesquitaFC09,
author = {Catia Pesquita and
Daniel Faria and
Francisco M. Couto},
editor = {Sung Y. Shin and
Sascha Ossowski},
title = {Measuring coherence between electronic and manual annotations in biological
databases},
booktitle = {Proceedings of the 2009 {ACM} Symposium on Applied Computing (SAC),
Honolulu, Hawaii, USA, March 9-12, 2009},
pages = {806--807},
publisher = {{ACM}},
year = {2009},
url = {https://doi.org/10.1145/1529282.1529452},
doi = {10.1145/1529282.1529452},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sac/PesquitaFC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/igi/09/CoutoSLDCA09,
author = {Francisco M. Couto and
M{\'{a}}rio J. Silva and
Vivian Lee and
Emily Dimmer and
Evelyn Camon and
Rolf Apweiler},
editor = {Violaine Prince and
Mathieu Roche},
title = {Verification of Uncurated Protein Annotations},
booktitle = {Information Retrieval in Biomedicine - Natural Language Processing
for Knowledge Integration},
pages = {301--314},
publisher = {{IGI} Global},
year = {2009},
url = {https://doi.org/10.4018/978-1-60566-274-9.ch016},
doi = {10.4018/978-1-60566-274-9.CH016},
timestamp = {Mon, 16 Sep 2019 14:43:09 +0200},
biburl = {https://dblp.org/rec/books/igi/09/CoutoSLDCA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PesquitaFBFFC08,
author = {Catia Pesquita and
Daniel Faria and
Hugo P. Bastos and
Ant{\'{o}}nio E. N. Ferreira and
Andr{\'{e}} O. Falc{\~{a}}o and
Francisco M. Couto},
title = {Metrics for {GO} based protein semantic similarity: a systematic evaluation},
journal = {{BMC} Bioinform.},
volume = {9},
number = {{S-5}},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-S5-S4},
doi = {10.1186/1471-2105-9-S5-S4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PesquitaFBFFC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icdim/CoutoGBPTSPB08,
author = {Francisco M. Couto and
Tiago Grego and
Hugo P. Bastos and
Catia Pesquita and
Rafael P. Torres and
Pablo Sanchez and
Leandro Pascual and
Christian Blaschke},
editor = {Pit Pichappan and
Ajith Abraham},
title = {Identifying bioentity recognition errors of rule-based text-mining
systems},
booktitle = {Third {IEEE} International Conference on Digital Information Management
(ICDIM), November 13-16, 2008, London, UK, Proceedings},
pages = {733--738},
publisher = {{IEEE}},
year = {2008},
url = {https://doi.org/10.1109/ICDIM.2008.4746791},
doi = {10.1109/ICDIM.2008.4746791},
timestamp = {Wed, 16 Oct 2019 14:14:49 +0200},
biburl = {https://dblp.org/rec/conf/icdim/CoutoGBPTSPB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dke/CoutoSC07,
author = {Francisco M. Couto and
M{\'{a}}rio J. Silva and
Pedro Coutinho},
title = {Measuring semantic similarity between Gene Ontology terms},
journal = {Data Knowl. Eng.},
volume = {61},
number = {1},
pages = {137--152},
year = {2007},
url = {https://doi.org/10.1016/j.datak.2006.05.003},
doi = {10.1016/J.DATAK.2006.05.003},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dke/CoutoSC07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/pt/Couto06,
author = {Francisco M. Couto},
title = {ReBIL: Relating Biological Information through Literature},
school = {University of Lisbon, Portugal},
year = {2006},
url = {https://hdl.handle.net/10451/14312},
timestamp = {Thu, 08 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/pt/Couto06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cikm/CoutoSC06,
author = {Francisco M. Couto and
M{\'{a}}rio J. Silva and
Pedro Coutinho},
editor = {Philip S. Yu and
Vassilis J. Tsotras and
Edward A. Fox and
Bing Liu},
title = {Validating associations in biological databases},
booktitle = {Proceedings of the 2006 {ACM} {CIKM} International Conference on Information
and Knowledge Management, Arlington, Virginia, USA, November 6-11,
2006},
pages = {142--151},
publisher = {{ACM}},
year = {2006},
url = {https://doi.org/10.1145/1183614.1183639},
doi = {10.1145/1183614.1183639},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cikm/CoutoSC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CoutoSC05,
author = {Francisco M. Couto and
M{\'{a}}rio J. Silva and
Pedro Coutinho},
title = {Finding genomic ontology terms in text using evidence content},
journal = {{BMC} Bioinform.},
volume = {6},
number = {{S-1}},
year = {2005},
url = {https://doi.org/10.1186/1471-2105-6-S1-S21},
doi = {10.1186/1471-2105-6-S1-S21},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CoutoSC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cikm/CoutoSC05,
author = {Francisco M. Couto and
M{\'{a}}rio J. Silva and
Pedro Coutinho},
editor = {Otthein Herzog and
Hans{-}J{\"{o}}rg Schek and
Norbert Fuhr and
Abdur Chowdhury and
Wilfried Teiken},
title = {Semantic similarity over the gene ontology: family correlation and
selecting disjunctive ancestors},
booktitle = {Proceedings of the 2005 {ACM} {CIKM} International Conference on Information
and Knowledge Management, Bremen, Germany, October 31 - November 5,
2005},
pages = {343--344},
publisher = {{ACM}},
year = {2005},
url = {https://doi.org/10.1145/1099554.1099658},
doi = {10.1145/1099554.1099658},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cikm/CoutoSC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sac/CoutoMS04,
author = {Francisco M. Couto and
Bruno Martins and
M{\'{a}}rio J. Silva},
editor = {Hisham Haddad and
Andrea Omicini and
Roger L. Wainwright and
Lorie M. Liebrock},
title = {Classifying biological articles using web resources},
booktitle = {Proceedings of the 2004 {ACM} Symposium on Applied Computing (SAC),
Nicosia, Cyprus, March 14-17, 2004},
pages = {111--115},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/967900.967925},
doi = {10.1145/967900.967925},
timestamp = {Tue, 06 Nov 2018 11:06:44 +0100},
biburl = {https://dblp.org/rec/conf/sac/CoutoMS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/jisbd/CoutoSC03,
author = {Francisco M. Couto and
M{\'{a}}rio J. Silva and
Pedro Coutinho},
editor = {Ernesto Pimentel and
Nieves R. Brisaboa and
Jaime G{\'{o}}mez},
title = {ProFAL: PROtein Functional Annotation through Literature},
booktitle = {{VIII} Jornadas Ingenier{\'{\i}}a del Software y Bases de Datos
{(JISBD} 2003), 12-14 Noviembre 2003, Alicante},
pages = {747--756},
year = {2003},
timestamp = {Wed, 12 May 2021 10:56:07 +0200},
biburl = {https://dblp.org/rec/conf/jisbd/CoutoSC03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mam/FonsecaAMC99,
author = {Jaime C. Fonseca and
Jo{\~{a}}o Luiz Afonso and
J{\'{u}}lio S. Martins and
Carlos Couto},
title = {Erratum to "Fuzzy logic speed control of an induction motor": {[J.}
Microprocessors Microsyst. 22 {(1999)} 523-534]},
journal = {Microprocess. Microsystems},
volume = {23},
number = {8-9},
pages = {553},
year = {1999},
url = {https://doi.org/10.1016/S0141-9331(99)00047-2},
doi = {10.1016/S0141-9331(99)00047-2},
timestamp = {Wed, 11 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/mam/FonsecaAMC99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mam/FonsecaAMC99a,
author = {Jaime C. Fonseca and
Jo{\~{a}}o Luiz Afonso and
J{\'{u}}lio S. Martins and
Carlos Couto},
title = {Fuzzy logic speed control of an induction motor},
journal = {Microprocess. Microsystems},
volume = {22},
number = {9},
pages = {523--534},
year = {1999},
url = {https://doi.org/10.1016/S0141-9331(98)00110-0},
doi = {10.1016/S0141-9331(98)00110-0},
timestamp = {Wed, 11 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/mam/FonsecaAMC99a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sbes/LimaBPC97,
author = {Maria Adriana Vidigal de Lima and
Tathiana da Silva Barr{\'{e}}re and
Ant{\^{o}}nio Francisco do Prado and
Andr{\'{e}} Alves C. R. do Couto},
editor = {Marcos Borges and
Ant{\^{o}}nio Mauro Barbosa de Oliveira},
title = {Ambiente "CASE" com M{\'{u}}ltiplas Vis{\~{o}}es de Requisitos
e Implementa{\c{c}}{\~{a}}o Autom{\'{a}}tica utilizando o Sistema
Transformacional Draco},
booktitle = {Proceedings of the 11th Brazilian Symposium on Software Engineering,
{SBES} 1997, Recife, PE, Brazil, October 15-17, 1997},
pages = {65--80},
publisher = {{SBC}},
year = {1997},
url = {https://doi.org/10.5753/sbes.1997.24041},
doi = {10.5753/SBES.1997.24041},
timestamp = {Tue, 16 Jan 2024 15:27:23 +0100},
biburl = {https://dblp.org/rec/conf/sbes/LimaBPC97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sbes/PradoCLS97,
author = {Ant{\^{o}}nio Francisco do Prado and
Andr{\'{e}} Alves Corr{\^{e}}a Ribeiro do Couto and
Maria Adriana Vidigal de Lima and
Tathiana Esteves da Silva},
editor = {Marcos Borges and
Ant{\^{o}}nio Mauro Barbosa de Oliveira},
title = {ToolRC : Ferramenta {CASE} Orientada a Objetos},
booktitle = {Proceedings of the 11th Brazilian Symposium on Software Engineering,
{SBES} 1997, Recife, PE, Brazil, October 15-17, 1997},
pages = {503--506},
publisher = {{SBC}},
year = {1997},
url = {https://doi.org/10.5753/sbes.1997.24073},
doi = {10.5753/SBES.1997.24073},
timestamp = {Tue, 16 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sbes/PradoCLS97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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