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@article{DBLP:journals/ploscb/SunHSMFVSRMSLY18,
  author       = {James X. Sun and
                  Yuting He and
                  Eric Sanford and
                  Meagan Montesion and
                  Garrett M. Frampton and
                  St{\'{e}}phane Vignot and
                  Jean{-}Charles Soria and
                  Jeffrey S. Ross and
                  Vincent A. Miller and
                  Philip J. Stephens and
                  Doron Lipson and
                  Roman Yelensky},
  title        = {A computational approach to distinguish somatic vs. germline origin
                  of genomic alterations from deep sequencing of cancer specimens without
                  a matched normal},
  journal      = {PLoS Comput. Biol.},
  volume       = {14},
  number       = {2},
  year         = {2018},
  url          = {https://doi.org/10.1371/journal.pcbi.1005965},
  doi          = {10.1371/JOURNAL.PCBI.1005965},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/SunHSMFVSRMSLY18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/cominfsys/LipsonST10,
  author       = {Doron Lipson and
                  Terence P. Speed and
                  Margaret Taub},
  title        = {Methods for Allocating Ambiguous Short-reads},
  journal      = {Commun. Inf. Syst.},
  volume       = {10},
  number       = {2},
  pages        = {69--82},
  year         = {2010},
  url          = {https://doi.org/10.4310/cis.2010.v10.n2.a1},
  doi          = {10.4310/CIS.2010.V10.N2.A1},
  timestamp    = {Wed, 16 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cominfsys/LipsonST10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcb/GiladiHMHKLRTL10,
  author       = {Eldar Giladi and
                  John Healy and
                  Gene Myers and
                  Chris Hart and
                  Philipp Kapranov and
                  Doron Lipson and
                  Steve Roels and
                  Edward C. Thayer and
                  Stan Letovsky},
  title        = {Error Tolerant Indexing and Alignment of Short Reads with Covering
                  Template Families},
  journal      = {J. Comput. Biol.},
  volume       = {17},
  number       = {10},
  pages        = {1397--1411},
  year         = {2010},
  url          = {https://doi.org/10.1089/cmb.2010.0005},
  doi          = {10.1089/CMB.2010.0005},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/GiladiHMHKLRTL10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/EdenNSLY09,
  author       = {Eran Eden and
                  Roy Navon and
                  Israel Steinfeld and
                  Doron Lipson and
                  Zohar Yakhini},
  title        = {\emph{GOrilla}: a tool for discovery and visualization of enriched
                  {GO} terms in ranked gene lists},
  journal      = {{BMC} Bioinform.},
  volume       = {10},
  year         = {2009},
  url          = {https://doi.org/10.1186/1471-2105-10-48},
  doi          = {10.1186/1471-2105-10-48},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/EdenNSLY09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@phdthesis{DBLP:phd/il/Lipson07,
  author       = {Doron Lipson},
  title        = {Computational aspects of {DNA} copy number measurement},
  school       = {Technion - Israel Institute of Technology, Israel},
  year         = {2007},
  url          = {https://technion.primo.exlibrisgroup.com/permalink/972TEC\_INST/q1jq5o/alma990022887610203971},
  timestamp    = {Thu, 01 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/phd/il/Lipson07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/LipsonYA07,
  author       = {Doron Lipson and
                  Zohar Yakhini and
                  Yonatan Aumann},
  title        = {Optimization of probe coverage for high-resolution oligonucleotide
                  aCGH},
  journal      = {Bioinform.},
  volume       = {23},
  number       = {2},
  pages        = {77--83},
  year         = {2007},
  url          = {https://doi.org/10.1093/bioinformatics/btl316},
  doi          = {10.1093/BIOINFORMATICS/BTL316},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LipsonYA07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/EdenLYY07,
  author       = {Eran Eden and
                  Doron Lipson and
                  Sivan Yogev and
                  Zohar Yakhini},
  title        = {Discovering Motifs in Ranked Lists of {DNA} Sequences},
  journal      = {PLoS Comput. Biol.},
  volume       = {3},
  number       = {3},
  year         = {2007},
  url          = {https://doi.org/10.1371/journal.pcbi.0030039},
  doi          = {10.1371/JOURNAL.PCBI.0030039},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/EdenLYY07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/recomb/Ben-DorLTRBBWBY07,
  author       = {Amir Ben{-}Dor and
                  Doron Lipson and
                  Anya Tsalenko and
                  Mark Reimers and
                  Lars O. Baumbusch and
                  Michael T. Barrett and
                  John N. Weinstein and
                  Anne{-}Lise B{\o}rresen{-}Dale and
                  Zohar Yakhini},
  editor       = {Terence P. Speed and
                  Haiyan Huang},
  title        = {Framework for Identifying Common Aberrations in {DNA} Copy Number
                  Data},
  booktitle    = {Research in Computational Molecular Biology, 11th Annual International
                  Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4453},
  pages        = {122--136},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71681-5\_9},
  doi          = {10.1007/978-3-540-71681-5\_9},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/Ben-DorLTRBBWBY07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcb/LipsonABLY06,
  author       = {Doron Lipson and
                  Yonatan Aumann and
                  Amir Ben{-}Dor and
                  Nathan Linial and
                  Zohar Yakhini},
  title        = {Efficient Calculation of Interval Scores for {DNA} Copy Number Data
                  Analysis},
  journal      = {J. Comput. Biol.},
  volume       = {13},
  number       = {2},
  pages        = {215--228},
  year         = {2006},
  url          = {https://doi.org/10.1089/cmb.2006.13.215},
  doi          = {10.1089/CMB.2006.13.215},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcb/LipsonABLY06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/recomb/LipsonABLY05,
  author       = {Doron Lipson and
                  Yonatan Aumann and
                  Amir Ben{-}Dor and
                  Nathan Linial and
                  Zohar Yakhini},
  editor       = {Satoru Miyano and
                  Jill P. Mesirov and
                  Simon Kasif and
                  Sorin Istrail and
                  Pavel A. Pevzner and
                  Michael S. Waterman},
  title        = {Efficient Calculation of Interval Scores for {DNA} Copy Number Data
                  Analysis},
  booktitle    = {Research in Computational Molecular Biology, 9th Annual International
                  Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {3500},
  pages        = {83--100},
  publisher    = {Springer},
  year         = {2005},
  url          = {https://doi.org/10.1007/11415770\_6},
  doi          = {10.1007/11415770\_6},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/LipsonABLY05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/wabi/LipsonBDY04,
  author       = {Doron Lipson and
                  Amir Ben{-}Dor and
                  Elinor Dehan and
                  Zohar Yakhini},
  editor       = {Inge Jonassen and
                  Junhyong Kim},
  title        = {Joint Analysis of {DNA} Copy Numbers and Gene Expression Levels},
  booktitle    = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
                  Bergen, Norway, September 17-21, 2004, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {3240},
  pages        = {135--146},
  publisher    = {Springer},
  year         = {2004},
  url          = {https://doi.org/10.1007/978-3-540-30219-3\_12},
  doi          = {10.1007/978-3-540-30219-3\_12},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/wabi/LipsonBDY04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/wabi/LipsonWY02,
  author       = {Doron Lipson and
                  Peter Webb and
                  Zohar Yakhini},
  editor       = {Roderic Guig{\'{o}} and
                  Dan Gusfield},
  title        = {Designing Specific Oligonucleotide Probes for the Entire S. cerevisiae
                  Transcriptome},
  booktitle    = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
                  2002, Rome, Italy, September 17-21, 2002, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {2452},
  pages        = {491--505},
  publisher    = {Springer},
  year         = {2002},
  url          = {https://doi.org/10.1007/3-540-45784-4\_38},
  doi          = {10.1007/3-540-45784-4\_38},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/wabi/LipsonWY02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

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