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@article{DBLP:journals/bioinformatics/Torres-GarciaZSVWYBWGV14,
  author       = {Wandaliz Torres{-}Garc{\'{\i}}a and
                  Siyuan Zheng and
                  Andrey Sivachenko and
                  Rahulsimham Vegesna and
                  Qianghu Wang and
                  Rong Yao and
                  Michael F. Berger and
                  John N. Weinstein and
                  Gad Getz and
                  Roel G. W. Verhaak},
  title        = {{PRADA:} pipeline for {RNA} sequencing data analysis},
  journal      = {Bioinform.},
  volume       = {30},
  number       = {15},
  pages        = {2224--2226},
  year         = {2014},
  url          = {https://doi.org/10.1093/bioinformatics/btu169},
  doi          = {10.1093/BIOINFORMATICS/BTU169},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Torres-GarciaZSVWYBWGV14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/DeLucaLSFNWRWG12,
  author       = {David S. DeLuca and
                  Joshua Z. Levin and
                  Andrey Sivachenko and
                  Tim Fennell and
                  Marc{-}Danie Nazaire and
                  Chris Williams and
                  Michael Reich and
                  Wendy Winckler and
                  Gad Getz},
  title        = {RNA-SeQC: RNA-seq metrics for quality control and process optimization},
  journal      = {Bioinform.},
  volume       = {28},
  number       = {11},
  pages        = {1530--1532},
  year         = {2012},
  url          = {https://doi.org/10.1093/bioinformatics/bts196},
  doi          = {10.1093/BIOINFORMATICS/BTS196},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DeLucaLSFNWRWG12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/HuanSHC08,
  author       = {Tianxiao Huan and
                  Andrey Y. Sivachenko and
                  Scott H. Harrison and
                  Jake Yue Chen},
  title        = {ProteoLens: a visual analytic tool for multi-scale database-driven
                  biological network data mining},
  journal      = {{BMC} Bioinform.},
  volume       = {9},
  number       = {{S-9}},
  year         = {2008},
  url          = {https://doi.org/10.1186/1471-2105-9-S9-S5},
  doi          = {10.1186/1471-2105-9-S9-S5},
  timestamp    = {Wed, 19 May 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/HuanSHC08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jbcb/SivachenkoYDM07,
  author       = {Andrey Y. Sivachenko and
                  Anton Yuryev and
                  Nikolai Daraselia and
                  Ilya Mazo},
  title        = {Molecular Networks in microarray Analysis},
  journal      = {J. Bioinform. Comput. Biol.},
  volume       = {5},
  number       = {2b},
  pages        = {429--456},
  year         = {2007},
  url          = {https://doi.org/10.1142/S0219720007002795},
  doi          = {10.1142/S0219720007002795},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jbcb/SivachenkoYDM07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/psb/ChenSS06,
  author       = {Jake Yue Chen and
                  Changyu Shen and
                  Andrey Y. Sivachenko},
  editor       = {Russ B. Altman and
                  Tiffany Murray and
                  Teri E. Klein and
                  A. Keith Dunker and
                  Lawrence Hunter},
  title        = {Mining Alzheimer Disease Relevant Proteins from Integrated Protein
                  Interactome Data},
  booktitle    = {Biocomputing 2006, Proceedings of the Pacific Symposium, Maui, Hawaii,
                  USA, 3-7 January 2006},
  pages        = {367--378},
  publisher    = {World Scientific},
  year         = {2006},
  url          = {http://psb.stanford.edu/psb-online/proceedings/psb06/chen\_j.pdf},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/psb/ChenSS06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/csb/SivachenkoYDM05,
  author       = {Andrey Y. Sivachenko and
                  Anton Yuryev and
                  Nikolai Daraselia and
                  Ilya Mazo},
  title        = {Identifying Local Gene Expression Patterns in Biomolecular Networks},
  booktitle    = {Fourth International {IEEE} Computer Society Computational Systems
                  Bioinformatics Conference Workshops {\&} Poster Abstracts, {CSB}
                  2005 Workshops, Stanford, CA, USA, August 8-11, 2005},
  pages        = {180--184},
  publisher    = {{IEEE} Computer Society},
  year         = {2005},
  url          = {https://doi.org/10.1109/CSBW.2005.72},
  doi          = {10.1109/CSBW.2005.72},
  timestamp    = {Thu, 23 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/csb/SivachenkoYDM05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/kdd/ChenSL04,
  author       = {Jake Yue Chen and
                  Andrey Y. Sivachenko and
                  Lang Li},
  editor       = {Mohammed Javeed Zaki and
                  Shinichi Morishita and
                  Isidore Rigoutsos},
  title        = {High-throughput Protein Interactome Data: Minable or Not?},
  booktitle    = {Proceedings of the 4th {ACM} {SIGKDD} Workshop on Data Mining in Bioinformatics
                  {(BIOKDD} 2004), August 22th, 2004, Seattle, Washington, {USA}},
  pages        = {18--23},
  year         = {2004},
  timestamp    = {Fri, 08 Dec 2017 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/kdd/ChenSL04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/csb/ChenSBKOS03,
  author       = {Jake Yue Chen and
                  Andrey Y. Sivachenko and
                  Russell Bell and
                  Cornelia Kurschner and
                  Irene Ota and
                  Sudhir Sahasrabudhe},
  title        = {Initial Large-scale Exploration of Protein-protein Interactions in
                  Human Brain},
  booktitle    = {2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003,
                  Stanford, CA, USA, August 11-14, 2003},
  pages        = {229--234},
  publisher    = {{IEEE} Computer Society},
  year         = {2003},
  url          = {https://doi.org/10.1109/CSB.2003.1227322},
  doi          = {10.1109/CSB.2003.1227322},
  timestamp    = {Thu, 23 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/csb/ChenSBKOS03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}