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export results for "saccharomyces genome database"
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@article{DBLP:journals/biodb/NashWKWECP20,
author = {Robert S. Nash and
Shuai Weng and
Kalpana Karra and
Edith D. Wong and
Stacia R. Engel and
J. Michael Cherry and
SGD Project},
title = {Incorporation of a unified protein abundance dataset into the Saccharomyces
genome database},
journal = {Database J. Biol. Databases Curation},
volume = {2020},
pages = {baaa008},
year = {2020}
}
@article{DBLP:journals/nar/NgWMAADNSGJKWMS20,
author = {Patrick C. Ng and
Edith D. Wong and
Kevin A. MacPherson and
Suzi A. Aleksander and
Joanna Argasinska and
Barbara Dunn and
Robert S. Nash and
Marek S. Skrzypek and
Felix Gondwe and
Sagar Jha and
Kalpana Karra and
Shuai Weng and
Stuart R. Miyasato and
Matt Simison and
Stacia R. Engel and
J. Michael Cherry},
title = {Transcriptome visualization and data availability at the Saccharomyces
Genome Database},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D743--D748},
year = {2020}
}
@article{DBLP:journals/biodb/WongSWBMPOECP19,
author = {Edith D. Wong and
Marek S. Skrzypek and
Shuai Weng and
Gail Binkley and
Birgit H. M. Meldal and
Livia Perfetto and
Sandra E. Orchard and
Stacia R. Engel and
J. Michael Cherry and
SGD Project},
title = {Integration of macromolecular complex data into the Saccharomyces
Genome Database},
journal = {Database J. Biol. Databases Curation},
volume = {2019},
pages = {baz008},
year = {2019}
}
@article{DBLP:journals/biodb/EngelSHWNWBSKC18,
author = {Stacia R. Engel and
Marek S. Skrzypek and
Sage T. Hellerstedt and
Edith D. Wong and
Robert S. Nash and
Shuai Weng and
Gail Binkley and
Travis K. Sheppard and
Kalpana Karra and
J. Michael Cherry},
title = {Updated regulation curation model at the Saccharomyces Genome Database},
journal = {Database J. Biol. Databases Curation},
volume = {2018},
pages = {bay007},
year = {2018}
}
@article{DBLP:journals/nar/SkrzypekNWMHEKW18,
author = {Marek S. Skrzypek and
Robert S. Nash and
Edith D. Wong and
Kevin A. MacPherson and
Sage T. Hellerstedt and
Stacia R. Engel and
Kalpana Karra and
Shuai Weng and
Travis K. Sheppard and
Gail Binkley and
Matt Simison and
Stuart R. Miyasato and
J. Michael Cherry},
title = {Saccharomyces genome database informs human biology},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Database-Issue},
pages = {D736--D742},
year = {2018}
}
@article{DBLP:journals/biodb/HellerstedtNWPW17,
author = {Sage T. Hellerstedt and
Robert S. Nash and
Shuai Weng and
Kelley M. Paskov and
Edith D. Wong and
Kalpana Karra and
Stacia R. Engel and
J. Michael Cherry},
title = {Curated protein information in the Saccharomyces genome database},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax011},
year = {2017}
}
@article{DBLP:journals/biodb/MacPhersonSWDH17,
author = {Kevin A. MacPherson and
Barry Starr and
Edith D. Wong and
Kyla S. Dalusag and
Sage T. Hellerstedt and
Olivia W. Lang and
Robert S. Nash and
Marek S. Skrzypek and
Stacia R. Engel and
J. Michael Cherry},
title = {Outreach and online training services at the Saccharomyces Genome
Database},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax002},
year = {2017}
}
@article{DBLP:journals/biodb/EngelWBPSC16,
author = {Stacia R. Engel and
Shuai Weng and
Gail Binkley and
Kelley M. Paskov and
Giltae Song and
J. Michael Cherry},
title = {From one to many: expanding the \emph{Saccharomyces cerevisiae} reference
genome panel},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016}
}
@article{DBLP:journals/biodb/SongBBCDDEHKHNP16,
author = {Giltae Song and
Rama Balakrishnan and
Gail Binkley and
Maria C. Costanzo and
Kyla S. Dalusag and
Janos Demeter and
Stacia R. Engel and
Sage T. Hellerstedt and
Kalpana Karra and
Benjamin C. Hitz and
Robert S. Nash and
Kelley M. Paskov and
Travis K. Sheppard and
Marek S. Skrzypek and
Shuai Weng and
Edith D. Wong and
J. Michael Cherry},
title = {Integration of new alternative reference strain genome sequences into
the \emph{Saccharomyces} genome database},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016}
}
@article{DBLP:journals/nar/SheppardHESBBCD16,
author = {Travis K. Sheppard and
Benjamin C. Hitz and
Stacia R. Engel and
Giltae Song and
Rama Balakrishnan and
Gail Binkley and
Maria C. Costanzo and
Kyla S. Dalusag and
Janos Demeter and
Sage T. Hellerstedt and
Kalpana Karra and
Robert S. Nash and
Kelley M. Paskov and
Marek S. Skrzypek and
Shuai Weng and
Edith D. Wong and
J. Michael Cherry},
title = {The \emph{Saccharomyces} Genome Database Variant Viewer},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {698--702},
year = {2016}
}
@article{DBLP:journals/nar/CostanzoEWLKCWPRBHC14,
author = {Maria C. Costanzo and
Stacia R. Engel and
Edith D. Wong and
Paul Lloyd and
Kalpana Karra and
Esther T. Chan and
Shuai Weng and
Kelley M. Paskov and
Greg R. Roe and
Gail Binkley and
Benjamin C. Hitz and
J. Michael Cherry},
title = {\emph{Saccharomyces} genome database provides new regulation data},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {717--725},
year = {2014}
}
@article{DBLP:journals/biodb/EngelC13,
author = {Stacia R. Engel and
J. Michael Cherry},
title = {The new modern era of yeast genomics: community sequencing and the
resulting annotation of multiple \emph{Saccharomyces cerevisiae} strains
at the \emph{Saccharomyces} Genome Database},
journal = {Database J. Biol. Databases Curation},
volume = {2013},
year = {2013}
}
@article{DBLP:journals/biodb/WongKHHC13,
author = {Edith D. Wong and
Kalpana Karra and
Benjamin C. Hitz and
Eurie L. Hong and
J. Michael Cherry},
title = {The YeastGenome app: the \emph{Saccharomyces} Genome Database at your
fingertips},
journal = {Database J. Biol. Databases Curation},
volume = {2013},
year = {2013}
}
@article{DBLP:journals/biodb/TumuPTDB12,
author = {Sudheer Tumu and
Ashish Patil and
William Towns and
Madhu Dyavaiah and
Thomas J. Begley},
title = {The gene-specific codon counting database: a genome-based catalog
of one-, two-, three-, four- and five-codon combinations present in
\emph{Saccharomyces cerevisiae} genes},
journal = {Database J. Biol. Databases Curation},
volume = {2012},
year = {2012}
}
@article{DBLP:journals/nar/CherryHABBCCCDEFHHKKMNPSSWW12,
author = {J. Michael Cherry and
Eurie L. Hong and
Craig Amundsen and
Rama Balakrishnan and
Gail Binkley and
Esther T. Chan and
Karen R. Christie and
Maria C. Costanzo and
Selina S. Dwight and
Stacia R. Engel and
Dianna G. Fisk and
Jodi E. Hirschman and
Benjamin C. Hitz and
Kalpana Karra and
Cynthia J. Krieger and
Stuart R. Miyasato and
Robert S. Nash and
Julie Park and
Marek S. Skrzypek and
Matt Simison and
Shuai Weng and
Edith D. Wong},
title = {Saccharomyces Genome Database: the genomics resource of budding yeast},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {700--705},
year = {2012}
}
@article{DBLP:journals/nar/EngelBBCCDFHHHKLMNOPSWWDBC10,
author = {Stacia R. Engel and
Rama Balakrishnan and
Gail Binkley and
Karen R. Christie and
Maria C. Costanzo and
Selina S. Dwight and
Dianna G. Fisk and
Jodi E. Hirschman and
Benjamin C. Hitz and
Eurie L. Hong and
Cynthia J. Krieger and
Michael S. Livstone and
Stuart R. Miyasato and
Robert S. Nash and
Rose Oughtred and
Julie Park and
Marek S. Skrzypek and
Shuai Weng and
Edith D. Wong and
Kara Dolinski and
David Botstein and
J. Michael Cherry},
title = {\emph{Saccharomyces} Genome Database provides mutant phenotype data},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {433--436},
year = {2010}
}
@article{DBLP:journals/biodb/CostanzoSNWBEHHC09,
author = {Maria C. Costanzo and
Marek S. Skrzypek and
Robert S. Nash and
Edith D. Wong and
Gail Binkley and
Stacia R. Engel and
Benjamin C. Hitz and
Eurie L. Hong and
J. Michael Cherry},
title = {New mutant phenotype data curation system in the \emph{Saccharomyces}
Genome Database},
journal = {Database J. Biol. Databases Curation},
volume = {2009},
year = {2009}
}
@article{DBLP:journals/bioinformatics/OConnorW07,
author = {Timothy R. O'Connor and
John J. Wyrick},
title = {ChromatinDB: a database of genome-wide histone modification patterns
for \emph{Saccharomyces cerevisiae}},
journal = {Bioinform.},
volume = {23},
number = {14},
pages = {1828--1830},
year = {2007}
}
@article{DBLP:journals/nar/HirschmanBCCDEFHLNPOSSTWABDLMSSTWDBC06,
author = {Jodi E. Hirschman and
Rama Balakrishnan and
Karen R. Christie and
Maria C. Costanzo and
Selina S. Dwight and
Stacia R. Engel and
Dianna G. Fisk and
Eurie L. Hong and
Michael S. Livstone and
Robert S. Nash and
Julie Park and
Rose Oughtred and
Marek S. Skrzypek and
Barry Starr and
Chandra L. Theesfeld and
Jennifer M. Williams and
Rey Andrada and
Gail Binkley and
Qing Dong and
Christopher Lane and
Stuart R. Miyasato and
Anand Sethuraman and
Mark Schroeder and
Mayank K. Thanawala and
Shuai Weng and
Kara Dolinski and
David Botstein and
J. Michael Cherry},
title = {Genome Snapshot: a new resource at the \emph{Saccharomyces} Genome
Database {(SGD)} presenting an overview of the \emph{Saccharomyces
cerevisiae} genome},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Database-Issue},
pages = {442--445},
year = {2006}
}
@inproceedings{DBLP:conf/asist/MacMullen06,
author = {W. John MacMullen},
title = {Quantifying literature citations, index terms, and Gene Ontology annotations
in the Saccharomyces Genome Database to assess results-set clustering
utility},
booktitle = {{ASIST}},
series = {Proc. Assoc. Inf. Sci. Technol.},
volume = {43},
number = {1},
pages = {1--17},
publisher = {Wiley},
year = {2006}
}
@article{DBLP:journals/nar/BalakrishnanCCDDEFHHNOSTBDLSWBC05,
author = {Rama Balakrishnan and
Karen R. Christie and
Maria C. Costanzo and
Kara Dolinski and
Selina S. Dwight and
Stacia R. Engel and
Dianna G. Fisk and
Jodi E. Hirschman and
Eurie L. Hong and
Robert S. Nash and
Rose Oughtred and
Marek S. Skrzypek and
Chandra L. Theesfeld and
Gail Binkley and
Qing Dong and
Christopher Lane and
Anand Sethuraman and
Shuai Weng and
David Botstein and
J. Michael Cherry},
title = {Fungal {BLAST} and Model Organism {BLASTP} Best Hits: new comparison
resources at the \emph{Saccharomyces} Genome Database {(SGD)}},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {374--377},
year = {2005}
}
@article{DBLP:journals/bib/DwightBCCDEFFHHINSSTABDLSWBC04,
author = {Selina S. Dwight and
Rama Balakrishnan and
Karen R. Christie and
Maria C. Costanzo and
Kara Dolinski and
Stacia R. Engel and
Becket Feierbach and
Dianna G. Fisk and
Jodi E. Hirschman and
Eurie L. Hong and
Laurie Issel{-}Tarver and
Robert S. Nash and
Anand Sethuraman and
Barry Starr and
Chandra L. Theesfeld and
Rey Andrada and
Gail Binkley and
Qing Dong and
Christopher Lane and
Mark Schroeder and
Shuai Weng and
David Botstein and
J. Michael Cherry},
title = {Saccharomyces genome database: Underlying principles and organisation},
journal = {Briefings Bioinform.},
volume = {5},
number = {1},
pages = {9--22},
year = {2004}
}
@article{DBLP:journals/nar/ChristieWBCDDEFFHHINSSTABDLSBC04,
author = {Karen R. Christie and
Shuai Weng and
Rama Balakrishnan and
Maria C. Costanzo and
Kara Dolinski and
Selina S. Dwight and
Stacia R. Engel and
Becket Feierbach and
Dianna G. Fisk and
Jodi E. Hirschman and
Eurie L. Hong and
Laurie Issel{-}Tarver and
Robert S. Nash and
Anand Sethuraman and
Barry Starr and
Chandra L. Theesfeld and
Rey Andrada and
Gail Binkley and
Qing Dong and
Christopher Lane and
Mark Schroeder and
David Botstein and
J. Michael Cherry},
title = {Saccharomyces Genome Database {(SGD)} provides tools to identify and
analyze sequences from Saccharomyces cerevisiae and related sequences
from other organisms},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Database-Issue},
pages = {311--314},
year = {2004}
}
@article{DBLP:journals/nar/WengDBCCDDEFHISTABLSBC03,
author = {Shuai Weng and
Qing Dong and
Rama Balakrishnan and
Karen R. Christie and
Maria C. Costanzo and
Kara Dolinski and
Selina S. Dwight and
Stacia R. Engel and
Dianna G. Fisk and
Eurie L. Hong and
Laurie Issel{-}Tarver and
Anand Sethuraman and
Chandra L. Theesfeld and
Rey Andrada and
Gail Binkley and
Christopher Lane and
Mark Schroeder and
David Botstein and
J. Michael Cherry},
title = {Saccharomyces Genome Database {(SGD)} provides biochemical and structural
information for budding yeast proteins},
journal = {Nucleic Acids Res.},
volume = {31},
number = {1},
pages = {216--218},
year = {2003}
}
@article{DBLP:journals/nar/DwightHDBBCFISSSWBC03,
author = {Selina S. Dwight and
Midori A. Harris and
Kara Dolinski and
Catherine A. Ball and
Gail Binkley and
Karen R. Christie and
Dianna G. Fisk and
Laurie Issel{-}Tarver and
Mark Schroeder and
Gavin Sherlock and
Anand Sethuraman and
Shuai Weng and
David Botstein and
J. Michael Cherry},
title = {Saccharomyces Genome Database {(SGD)} provides secondary gene annotation
using the Gene Ontology {(GO)}},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {69--72},
year = {2002}
}
@article{DBLP:journals/nar/BallJSWMABDDHISBC01,
author = {Catherine A. Ball and
Heng Jin and
Gavin Sherlock and
Shuai Weng and
John C. Matese and
Rey Andrada and
Gail Binkley and
Kara Dolinski and
Selina S. Dwight and
Midori A. Harris and
Laurie Issel{-}Tarver and
Mark Schroeder and
David Botstein and
J. Michael Cherry},
title = {Saccharomyces Genome Database provides tools to survey gene expression
and functional analysis data},
journal = {Nucleic Acids Res.},
volume = {29},
number = {1},
pages = {80--81},
year = {2001}
}
@article{DBLP:journals/nar/BallDDHIKSSBJKOSWZBC00,
author = {Catherine A. Ball and
Kara Dolinski and
Selina S. Dwight and
Midori A. Harris and
Laurie Issel{-}Tarver and
Andrew Kasarskis and
Charles R. Scafe and
Gavin Sherlock and
Gail Binkley and
Heng Jin and
Miroslava Kaloper and
Sidney D. Orr and
Mark Schroeder and
Shuai Weng and
Yan Zhu and
David Botstein and
J. Michael Cherry},
title = {Integrating functional genomic information into the Saccharomyces
Genome Database},
journal = {Nucleic Acids Res.},
volume = {28},
number = {1},
pages = {77--80},
year = {2000}
}
@article{DBLP:journals/nar/ChervitzHBDDHJMRRSSSWZCB99,
author = {Stephen A. Chervitz and
Erich T. Hester and
Catherine A. Ball and
Kara Dolinski and
Selina S. Dwight and
Midori A. Harris and
Gail Juvik and
Alice Malekian and
Shannon Roberts and
TaiYun Roe and
Charles R. Scafe and
Mark Schroeder and
Gavin Sherlock and
Shuai Weng and
Yan Zhu and
J. Michael Cherry and
David Botstein},
title = {Using the Saccharomyces Genome Database {(SGD)} for analysis of protein
similarities and structure},
journal = {Nucleic Acids Res.},
volume = {27},
number = {1},
pages = {74--78},
year = {1999}
}
@article{DBLP:journals/nar/CherryABCDHJJRSWB98,
author = {J. Michael Cherry and
Caroline Adler and
Catherine A. Ball and
Stephen A. Chervitz and
Selina S. Dwight and
Erich T. Hester and
Yankai Jia and
Gail Juvik and
TaiYun Roe and
Mark Schroeder and
Shuai Weng and
David Botstein},
title = {{SGD:} Saccharomyces Genome Database},
journal = {Nucleic Acids Res.},
volume = {26},
number = {1},
pages = {73--79},
year = {1998}
}
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