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@article{DBLP:journals/mia/WeitzVSCKBKKRFPSERMGAWJ24,
author = {Philippe Weitz and
Masi Valkonen and
Leslie Solorzano and
Circe Carr and
Kimmo Kartasalo and
Constance Boissin and
Sonja Koivukoski and
Aino Kuusela and
Dusan Rasic and
Yanbo Feng and
Sandra Kristiane Sinius Pouplier and
Abhinav Sharma and
Kajsa Ledesma Eriksson and
Stephanie Robertson and
Christian Marzahl and
Chandler D. Gatenbee and
Alexander R. A. Anderson and
Marek Wodzinski and
Artur Jurgas and
Niccol{\`{o}} Marini and
Manfredo Atzori and
Henning M{\"{u}}ller and
Daniel Budelmann and
Nick Weiss and
Stefan Heldmann and
Johannes Lotz and
Jelmer M. Wolterink and
Bruno De Santi and
Abhijeet Patil and
Amit Sethi and
Satoshi Kondo and
Satoshi Kasai and
Kousuke Hirasawa and
Mahtab Farrokh and
Neeraj Kumar and
Russell Greiner and
Leena Latonen and
Anne{-}Vibeke Laenkholm and
Johan Hartman and
Pekka Ruusuvuori and
Mattias Rantalainen},
title = {The {ACROBAT} 2022 challenge: Automatic registration of breast cancer
tissue},
journal = {Medical Image Anal.},
volume = {97},
pages = {103257},
year = {2024}
}
@article{DBLP:journals/ncs/SchaferNHLMFSLK24,
author = {Raphael Sch{\"{a}}fer and
Till Nicke and
Henning H{\"{o}}fener and
Annkristin Lange and
Dorit Merhof and
Friedrich Feuerhake and
Volkmar Schulz and
Johannes Lotz and
Fabian Kiessling},
title = {Overcoming data scarcity in biomedical imaging with a foundational
multi-task model},
journal = {Nat. Comput. Sci.},
volume = {4},
number = {7},
pages = {495--509},
year = {2024}
}
@inproceedings{DBLP:conf/isbi/HuangYLSKBLFM24,
author = {Boqiang Huang and
Jiayu Ying and
Ruizhi Lyu and
Nadine S. Schaadt and
Barbara Mara Klinkhammer and
Peter Boor and
Johannes Lotz and
Friedrich Feuerhake and
Dorit Merhof},
title = {Utnetpara: {A} Hybrid CNN-Transformer Architecture with Multi-Scale
Fusion for Whole-Slide Image Segmentation},
booktitle = {{ISBI}},
pages = {1--5},
publisher = {{IEEE}},
year = {2024}
}
@article{DBLP:journals/cmig/AwanRLWR23,
author = {Ruqayya Awan and
Shan E Ahmed Raza and
Johannes Lotz and
Nick Weiss and
Nasir M. Rajpoot},
title = {Deep feature based cross-slide registration},
journal = {Comput. Medical Imaging Graph.},
volume = {104},
pages = {102162},
year = {2023}
}
@article{DBLP:journals/corr/abs-2305-18033,
author = {Philippe Weitz and
Masi Valkonen and
Leslie Solorzano and
Circe Carr and
Kimmo Kartasalo and
Constance Boissin and
Sonja Koivukoski and
Aino Kuusela and
Dusan Rasic and
Yanbo Feng and
Sandra Kristiane Sinius Pouplier and
Abhinav Sharma and
Kajsa Ledesma Eriksson and
Stephanie Robertson and
Christian Marzahl and
Chandler D. Gatenbee and
Alexander R. A. Anderson and
Marek Wodzinski and
Artur Jurgas and
Niccol{\`{o}} Marini and
Manfredo Atzori and
Henning M{\"{u}}ller and
Daniel Budelmann and
Nick Weiss and
Stefan Heldmann and
Johannes Lotz and
Jelmer M. Wolterink and
Bruno De Santi and
Abhijeet Patil and
Amit Sethi and
Satoshi Kondo and
Satoshi Kasai and
Kousuke Hirasawa and
Mahtab Farrokh and
Neeraj Kumar and
Russell Greiner and
Leena Latonen and
Anne{-}Vibeke Laenkholm and
Johan Hartman and
Pekka Ruusuvuori and
Mattias Rantalainen},
title = {The {ACROBAT} 2022 Challenge: Automatic Registration Of Breast Cancer
Tissue},
journal = {CoRR},
volume = {abs/2305.18033},
year = {2023}
}
@article{DBLP:journals/corr/abs-2311-09847,
author = {Raphael Sch{\"{a}}fer and
Till Nicke and
Henning H{\"{o}}fener and
Annkristin Lange and
Dorit Merhof and
Friedrich Feuerhake and
Volkmar Schulz and
Johannes Lotz and
Fabian Kiessling},
title = {Overcoming Data Scarcity in Biomedical Imaging with a Foundational
Multi-Task Model},
journal = {CoRR},
volume = {abs/2311.09847},
year = {2023}
}
@inproceedings{DBLP:conf/itsc/ZhangEL22,
author = {Xian Zhang and
Johannes Eck and
Felix Lotz},
title = {A Path Planning Approach for Tractor-Trailer System based on Semi-Supervised
Learning},
booktitle = {{ITSC}},
pages = {3549--3555},
publisher = {{IEEE}},
year = {2022}
}
@article{DBLP:journals/corr/abs-2202-09971,
author = {Ruqayya Awan and
Shan{-}E{-}Ahmed Raza and
Johannes Lotz and
Nick Weiss and
Nasir M. Rajpoot},
title = {Deep Feature based Cross-slide Registration},
journal = {CoRR},
volume = {abs/2202.09971},
year = {2022}
}
@article{DBLP:journals/corr/abs-2203-00449,
author = {Ruqayya Awan and
Mohammed Nimir and
Shan E Ahmed Raza and
Johannes Lotz and
David R. J. Snead and
Andrew Robison and
Nasir M. Rajpoot},
title = {Deep Learning based Prediction of {MSI} in Colorectal Cancer via Prediction
of the Status of {MMR} Markers},
journal = {CoRR},
volume = {abs/2203.00449},
year = {2022}
}
@article{DBLP:journals/corr/abs-2206-14092,
author = {Winfried L{\"{o}}tzsch and
Simon Ohler and
Johannes S. Otterbach},
title = {Learning the Solution Operator of Boundary Value Problems using Graph
Neural Networks},
journal = {CoRR},
volume = {abs/2206.14092},
year = {2022}
}
@article{DBLP:journals/corr/abs-2207-08927,
author = {Simon Ohler and
Daniel Brady and
Winfried L{\"{o}}tzsch and
Michael Fleischhauer and
Johannes S. Otterbach},
title = {Towards Learning Self-Organized Criticality of Rydberg Atoms using
Graph Neural Networks},
journal = {CoRR},
volume = {abs/2207.08927},
year = {2022}
}
@misc{DBLP:data/10/LaakLWH21,
author = {Jeroen van der Laak and
Johannes Lotz and
Nick Weiss and
Stefan Heldmann},
title = {HyReCo - Hybrid re-stained and consecutive histological serial sections},
publisher = {{IEEE} DataPort},
year = {2021},
month = dec,
howpublished = {\url{https://doi.org/10.21227/pzj5-bs61}},
note = {Accessed on YYYY-MM-DD.}
}
@article{DBLP:journals/corr/abs-2106-13150,
author = {Johannes Lotz and
Nick Weiss and
Jeroen van der Laak and
Stefan Heldmann},
title = {High-resolution Image Registration of Consecutive and Re-stained Sections
in Histopathology},
journal = {CoRR},
volume = {abs/2106.13150},
year = {2021}
}
@article{DBLP:journals/tmi/BorovecKASBKBCH20,
author = {Jir{\'{\i}} Borovec and
Jan Kybic and
Ignacio Arganda{-}Carreras and
Dmitry V. Sorokin and
Gloria Bueno and
Alexander V. Khvostikov and
Spyridon Bakas and
Eric I{-}Chao Chang and
Stefan Heldmann and
Kimmo Kartasalo and
Leena Latonen and
Johannes Lotz and
Michelle Noga and
Sarthak Pati and
Kumaradevan Punithakumar and
Pekka Ruusuvuori and
Andrzej Skalski and
Nazanin Tahmasebi and
Masi Valkonen and
Ludovic Venet and
Yizhe Wang and
Nick Weiss and
Marek Wodzinski and
Yu Xiang and
Yan Xu and
Yan Yan and
Paul A. Yushkevich and
Shengyu Zhao and
Arrate Mu{\~{n}}oz{-}Barrutia},
title = {{ANHIR:} Automatic Non-Rigid Histological Image Registration Challenge},
journal = {{IEEE} Trans. Medical Imaging},
volume = {39},
number = {10},
pages = {3042--3052},
year = {2020}
}
@inproceedings{DBLP:conf/iccS/GanellariHZ0PLN20,
author = {Daniel Ganellari and
Gundolf Haase and
Gerhard W. Zumbusch and
Johannes Lotz and
Patrick Peltzer and
Klaus Leppkes and
Uwe Naumann},
title = {Patient-Specific Cardiac Parametrization from Eikonal Simulations},
booktitle = {{ICCS} {(1)}},
series = {Lecture Notes in Computer Science},
volume = {12137},
pages = {290--303},
publisher = {Springer},
year = {2020}
}
@inproceedings{DBLP:conf/iccS/Peltzer0N20,
author = {Patrick Peltzer and
Johannes Lotz and
Uwe Naumann},
title = {Eigen-AD: Algorithmic Differentiation of the Eigen Library},
booktitle = {{ICCS} {(1)}},
series = {Lecture Notes in Computer Science},
volume = {12137},
pages = {690--704},
publisher = {Springer},
year = {2020}
}
@inproceedings{DBLP:conf/isbi/MercanMT0WGC20,
author = {Caner Mercan and
G. C. A. M. Mooij and
David Tellez and
Johannes Lotz and
Nick Weiss and
Marcel van Gerven and
Francesco Ciompi},
title = {Virtual Staining for Mitosis Detection in Breast Histopathology},
booktitle = {{ISBI}},
pages = {1770--1774},
publisher = {{IEEE}},
year = {2020}
}
@article{DBLP:journals/corr/abs-2003-07801,
author = {Caner Mercan and
Germonda Reijnen{-}Mooij and
David Tellez Martin and
Johannes Lotz and
Nick Weiss and
Marcel van Gerven and
Francesco Ciompi},
title = {Virtual staining for mitosis detection in Breast Histopathology},
journal = {CoRR},
volume = {abs/2003.07801},
year = {2020}
}
@article{DBLP:journals/corr/abs-1903-12063,
author = {Johannes Lotz and
Nick Weiss and
Stefan Heldmann},
title = {Robust, fast and accurate: a 3-step method for automatic histological
image registration},
journal = {CoRR},
volume = {abs/1903.12063},
year = {2019}
}
@article{DBLP:journals/corr/abs-1911-12604,
author = {Patrick Peltzer and
Johannes Lotz and
Uwe Naumann},
title = {Eigen-AD: Algorithmic Differentiation of the Eigen Library},
journal = {CoRR},
volume = {abs/1911.12604},
year = {2019}
}
@article{DBLP:journals/corr/abs-1808-05883,
author = {Wouter Bulten and
P{\'{e}}ter B{\'{a}}ndi and
Jeffrey Hoven and
Rob van de Loo and
Johannes Lotz and
Nick Weiss and
Jeroen van der Laak and
Bram van Ginneken and
Christina A. Hulsbergen van de Kaa and
Geert Litjens},
title = {Epithelium segmentation using deep learning in H{\&}E-stained
prostate specimens with immunohistochemistry as reference standard},
journal = {CoRR},
volume = {abs/1808.05883},
year = {2018}
}
@article{DBLP:journals/tbe/LotzOMPGLHLGWLG16,
author = {Johannes Lotz and
Janine Olesch and
Benedikt M{\"{u}}ller and
Thomas Polzin and
P. Galuschka and
J. M. Lotz and
Stefan Heldmann and
Hendrik Laue and
Margarita Gonzalez{-}Vallinas and
Arne Warth and
Bernd Lahrmann and
Niels Grabe and
Oliver Sedlaczek and
Kai Breuhahn and
Jan Modersitzki},
title = {Patch-Based Nonlinear Image Registration for Gigapixel Whole Slide
Images},
journal = {{IEEE} Trans. Biomed. Eng.},
volume = {63},
number = {9},
pages = {1812--1819},
year = {2016}
}
@inproceedings{DBLP:conf/iccS/LotzSN16,
author = {Johannes Lotz and
Marc Schwalbach and
Uwe Naumann},
title = {A Case Study in Adjoint Sensitivity Analysis of Parameter Calibration},
booktitle = {{ICCS}},
series = {Procedia Computer Science},
volume = {80},
pages = {201--211},
publisher = {Elsevier},
year = {2016}
}
@inproceedings{DBLP:conf/iccS/SafiranLN16,
author = {Niloofar Safiran and
Johannes Lotz and
Uwe Naumann},
title = {Algorithmic Differentiation of Numerical Methods: Second-Order Adjoint
Solvers for Parameterized Systems of Nonlinear Equations},
booktitle = {{ICCS}},
series = {Procedia Computer Science},
volume = {80},
pages = {2231--2235},
publisher = {Elsevier},
year = {2016}
}
@inproceedings{DBLP:conf/siamcsc/0001NM16,
author = {Johannes Lotz and
Uwe Naumann and
Sumit Mitra},
title = {Mixed Integer Programming for Call Tree Reversal},
booktitle = {{CSC}},
pages = {83--91},
publisher = {{SIAM}},
year = {2016}
}
@article{DBLP:journals/toms/NaumannLLT15,
author = {Uwe Naumann and
Johannes Lotz and
Klaus Leppkes and
Markus Towara},
title = {Algorithmic Differentiation of Numerical Methods: Tangent and Adjoint
Solvers for Parameterized Systems of Nonlinear Equations},
journal = {{ACM} Trans. Math. Softw.},
volume = {41},
number = {4},
pages = {26:1--26:21},
year = {2015}
}
@inproceedings{DBLP:conf/bildmed/WeissLM15,
author = {Nick Weiss and
Johannes Lotz and
Jan Modersitzki},
title = {Multimodal Image Registration in Digital Pathology Using Cell Nuclei
Densities},
booktitle = {Bildverarbeitung f{\"{u}}r die Medizin},
series = {Informatik Aktuell},
pages = {245--250},
publisher = {Springer},
year = {2015}
}
@inproceedings{DBLP:conf/curac/GuntherBGHKOKLO15,
author = {Matthias G{\"{u}}nther and
Tobias Bartscherer and
Joachim Georgii and
Holger Hewener and
Till Kipshagen and
Darko Ojdanic and
Bojan Kovec and
Johannes Lotz and
Janine Olesch and
Sven Rothl{\"{u}}bbers and
Michael Schwenke and
Daniel Speicher and
Steffen H. Tretbar},
title = {Towards MR-guided biopsy outside the MR-scanner: information fusion
based on simultaneous ultrasound-MR imaging and real-time motion tracking},
booktitle = {{CURAC}},
pages = {15--16},
year = {2015}
}
@inproceedings{DBLP:conf/iccS/LotzNHPM15,
author = {Johannes Lotz and
Uwe Naumann and
Ralf Hannemann{-}Tam{\'{a}}s and
Tobias Ploch and
Alexander Mitsos},
title = {Higher-order Discrete Adjoint {ODE} Solver in {C++} for Dynamic Optimization},
booktitle = {{ICCS}},
series = {Procedia Computer Science},
volume = {51},
pages = {256--265},
publisher = {Elsevier},
year = {2015}
}
@inproceedings{DBLP:conf/iccS/SafiranLN15,
author = {Niloofar Safiran and
Johannes Lotz and
Uwe Naumann},
title = {Second-order Tangent Solvers for Systems of Parameterized Nonlinear
Equations},
booktitle = {{ICCS}},
series = {Procedia Computer Science},
volume = {51},
pages = {231--238},
publisher = {Elsevier},
year = {2015}
}
@inproceedings{DBLP:conf/midp/0002B0BGHHLLOSS14,
author = {Johannes Lotz and
Judith Berger and
Benedikt M{\"{u}}ller and
Kai Breuhahn and
Niels Grabe and
Stefan Heldmann and
Andr{\'{e}} Homeyer and
Bernd Lahrmann and
Hendrik Laue and
Janine Olesch and
Michael Schwier and
Oliver Sedlaczek and
Arne Warth},
title = {Zooming in: high resolution 3D reconstruction of differently stained
histological whole slide images},
booktitle = {Medical Imaging: Digital Pathology},
series = {{SPIE} Proceedings},
volume = {9041},
pages = {904104},
publisher = {{SPIE}},
year = {2014}
}
@article{DBLP:journals/tcst/LoheLCK13,
author = {Johannes L{\"{o}}he and
Marc Lotz and
Mark Cannon and
Basil Kouvaritakis},
title = {Application of Optimal Control Algorithm to Inertia Friction Welding
Process},
journal = {{IEEE} Trans. Control. Syst. Technol.},
volume = {21},
number = {3},
pages = {891--898},
year = {2013}
}
@inproceedings{DBLP:conf/europar/LotzNSS13,
author = {Johannes Lotz and
Uwe Naumann and
Max Sagebaum and
Michel Schanen},
title = {Discrete Adjoints of PETSc through dco/c++ and Adjoint {MPI}},
booktitle = {Euro-Par},
series = {Lecture Notes in Computer Science},
volume = {8097},
pages = {497--507},
publisher = {Springer},
year = {2013}
}
@inproceedings{DBLP:conf/iccS/SagebaumGNLL13,
author = {Max Sagebaum and
Nicolas R. Gauger and
Uwe Naumann and
Johannes Lotz and
Klaus Leppkes},
title = {Algorithmic Differentiation of a Complex {C++} Code with Underlying
Libraries},
booktitle = {{ICCS}},
series = {Procedia Computer Science},
volume = {18},
pages = {208--217},
publisher = {Elsevier},
year = {2013}
}
@inproceedings{DBLP:conf/miip/Lotz0OG13,
author = {Johannes Lotz and
Bernd Fischer and
Janine Olesch and
Matthias G{\"{u}}nther},
title = {Real time motion analysis in 4D medical imaging using conditional
density propagation},
booktitle = {Medical Imaging: Image Processing},
series = {{SPIE} Proceedings},
volume = {8669},
pages = {86690T},
publisher = {{SPIE}},
year = {2013}
}
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retrieved on 2024-09-12 08:25 CEST from data curated by the dblp team
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