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export results for "Johannes Lotz"
@article{DBLP:journals/mia/WeitzVSCKBKKRFPSERMGAWJ24, author = {Philippe Weitz and Masi Valkonen and Leslie Solorzano and Circe Carr and Kimmo Kartasalo and Constance Boissin and Sonja Koivukoski and Aino Kuusela and Dusan Rasic and Yanbo Feng and Sandra Kristiane Sinius Pouplier and Abhinav Sharma and Kajsa Ledesma Eriksson and Stephanie Robertson and Christian Marzahl and Chandler D. Gatenbee and Alexander R. A. Anderson and Marek Wodzinski and Artur Jurgas and Niccol{\`{o}} Marini and Manfredo Atzori and Henning M{\"{u}}ller and Daniel Budelmann and Nick Weiss and Stefan Heldmann and Johannes Lotz and Jelmer M. Wolterink and Bruno De Santi and Abhijeet Patil and Amit Sethi and Satoshi Kondo and Satoshi Kasai and Kousuke Hirasawa and Mahtab Farrokh and Neeraj Kumar and Russell Greiner and Leena Latonen and Anne{-}Vibeke Laenkholm and Johan Hartman and Pekka Ruusuvuori and Mattias Rantalainen}, title = {The {ACROBAT} 2022 challenge: Automatic registration of breast cancer tissue}, journal = {Medical Image Anal.}, volume = {97}, pages = {103257}, year = {2024} }
@article{DBLP:journals/ncs/SchaferNHLMFSLK24, author = {Raphael Sch{\"{a}}fer and Till Nicke and Henning H{\"{o}}fener and Annkristin Lange and Dorit Merhof and Friedrich Feuerhake and Volkmar Schulz and Johannes Lotz and Fabian Kiessling}, title = {Overcoming data scarcity in biomedical imaging with a foundational multi-task model}, journal = {Nat. Comput. Sci.}, volume = {4}, number = {7}, pages = {495--509}, year = {2024} }
@inproceedings{DBLP:conf/isbi/HuangYLSKBLFM24, author = {Boqiang Huang and Jiayu Ying and Ruizhi Lyu and Nadine S. Schaadt and Barbara Mara Klinkhammer and Peter Boor and Johannes Lotz and Friedrich Feuerhake and Dorit Merhof}, title = {Utnetpara: {A} Hybrid CNN-Transformer Architecture with Multi-Scale Fusion for Whole-Slide Image Segmentation}, booktitle = {{ISBI}}, pages = {1--5}, publisher = {{IEEE}}, year = {2024} }
@article{DBLP:journals/cmig/AwanRLWR23, author = {Ruqayya Awan and Shan E Ahmed Raza and Johannes Lotz and Nick Weiss and Nasir M. Rajpoot}, title = {Deep feature based cross-slide registration}, journal = {Comput. Medical Imaging Graph.}, volume = {104}, pages = {102162}, year = {2023} }
@article{DBLP:journals/corr/abs-2305-18033, author = {Philippe Weitz and Masi Valkonen and Leslie Solorzano and Circe Carr and Kimmo Kartasalo and Constance Boissin and Sonja Koivukoski and Aino Kuusela and Dusan Rasic and Yanbo Feng and Sandra Kristiane Sinius Pouplier and Abhinav Sharma and Kajsa Ledesma Eriksson and Stephanie Robertson and Christian Marzahl and Chandler D. Gatenbee and Alexander R. A. Anderson and Marek Wodzinski and Artur Jurgas and Niccol{\`{o}} Marini and Manfredo Atzori and Henning M{\"{u}}ller and Daniel Budelmann and Nick Weiss and Stefan Heldmann and Johannes Lotz and Jelmer M. Wolterink and Bruno De Santi and Abhijeet Patil and Amit Sethi and Satoshi Kondo and Satoshi Kasai and Kousuke Hirasawa and Mahtab Farrokh and Neeraj Kumar and Russell Greiner and Leena Latonen and Anne{-}Vibeke Laenkholm and Johan Hartman and Pekka Ruusuvuori and Mattias Rantalainen}, title = {The {ACROBAT} 2022 Challenge: Automatic Registration Of Breast Cancer Tissue}, journal = {CoRR}, volume = {abs/2305.18033}, year = {2023} }
@article{DBLP:journals/corr/abs-2311-09847, author = {Raphael Sch{\"{a}}fer and Till Nicke and Henning H{\"{o}}fener and Annkristin Lange and Dorit Merhof and Friedrich Feuerhake and Volkmar Schulz and Johannes Lotz and Fabian Kiessling}, title = {Overcoming Data Scarcity in Biomedical Imaging with a Foundational Multi-Task Model}, journal = {CoRR}, volume = {abs/2311.09847}, year = {2023} }
@inproceedings{DBLP:conf/itsc/ZhangEL22, author = {Xian Zhang and Johannes Eck and Felix Lotz}, title = {A Path Planning Approach for Tractor-Trailer System based on Semi-Supervised Learning}, booktitle = {{ITSC}}, pages = {3549--3555}, publisher = {{IEEE}}, year = {2022} }
@article{DBLP:journals/corr/abs-2202-09971, author = {Ruqayya Awan and Shan{-}E{-}Ahmed Raza and Johannes Lotz and Nick Weiss and Nasir M. Rajpoot}, title = {Deep Feature based Cross-slide Registration}, journal = {CoRR}, volume = {abs/2202.09971}, year = {2022} }
@article{DBLP:journals/corr/abs-2203-00449, author = {Ruqayya Awan and Mohammed Nimir and Shan E Ahmed Raza and Johannes Lotz and David R. J. Snead and Andrew Robison and Nasir M. Rajpoot}, title = {Deep Learning based Prediction of {MSI} in Colorectal Cancer via Prediction of the Status of {MMR} Markers}, journal = {CoRR}, volume = {abs/2203.00449}, year = {2022} }
@article{DBLP:journals/corr/abs-2206-14092, author = {Winfried L{\"{o}}tzsch and Simon Ohler and Johannes S. Otterbach}, title = {Learning the Solution Operator of Boundary Value Problems using Graph Neural Networks}, journal = {CoRR}, volume = {abs/2206.14092}, year = {2022} }
@article{DBLP:journals/corr/abs-2207-08927, author = {Simon Ohler and Daniel Brady and Winfried L{\"{o}}tzsch and Michael Fleischhauer and Johannes S. Otterbach}, title = {Towards Learning Self-Organized Criticality of Rydberg Atoms using Graph Neural Networks}, journal = {CoRR}, volume = {abs/2207.08927}, year = {2022} }
@misc{DBLP:data/10/LaakLWH21, author = {Jeroen van der Laak and Johannes Lotz and Nick Weiss and Stefan Heldmann}, title = {HyReCo - Hybrid re-stained and consecutive histological serial sections}, publisher = {{IEEE} DataPort}, year = {2021}, month = dec, howpublished = {\url{https://doi.org/10.21227/pzj5-bs61}}, note = {Accessed on YYYY-MM-DD.} }
@article{DBLP:journals/corr/abs-2106-13150, author = {Johannes Lotz and Nick Weiss and Jeroen van der Laak and Stefan Heldmann}, title = {High-resolution Image Registration of Consecutive and Re-stained Sections in Histopathology}, journal = {CoRR}, volume = {abs/2106.13150}, year = {2021} }
@article{DBLP:journals/tmi/BorovecKASBKBCH20, author = {Jir{\'{\i}} Borovec and Jan Kybic and Ignacio Arganda{-}Carreras and Dmitry V. Sorokin and Gloria Bueno and Alexander V. Khvostikov and Spyridon Bakas and Eric I{-}Chao Chang and Stefan Heldmann and Kimmo Kartasalo and Leena Latonen and Johannes Lotz and Michelle Noga and Sarthak Pati and Kumaradevan Punithakumar and Pekka Ruusuvuori and Andrzej Skalski and Nazanin Tahmasebi and Masi Valkonen and Ludovic Venet and Yizhe Wang and Nick Weiss and Marek Wodzinski and Yu Xiang and Yan Xu and Yan Yan and Paul A. Yushkevich and Shengyu Zhao and Arrate Mu{\~{n}}oz{-}Barrutia}, title = {{ANHIR:} Automatic Non-Rigid Histological Image Registration Challenge}, journal = {{IEEE} Trans. Medical Imaging}, volume = {39}, number = {10}, pages = {3042--3052}, year = {2020} }
@inproceedings{DBLP:conf/iccS/GanellariHZ0PLN20, author = {Daniel Ganellari and Gundolf Haase and Gerhard W. Zumbusch and Johannes Lotz and Patrick Peltzer and Klaus Leppkes and Uwe Naumann}, title = {Patient-Specific Cardiac Parametrization from Eikonal Simulations}, booktitle = {{ICCS} {(1)}}, series = {Lecture Notes in Computer Science}, volume = {12137}, pages = {290--303}, publisher = {Springer}, year = {2020} }
@inproceedings{DBLP:conf/iccS/Peltzer0N20, author = {Patrick Peltzer and Johannes Lotz and Uwe Naumann}, title = {Eigen-AD: Algorithmic Differentiation of the Eigen Library}, booktitle = {{ICCS} {(1)}}, series = {Lecture Notes in Computer Science}, volume = {12137}, pages = {690--704}, publisher = {Springer}, year = {2020} }
@inproceedings{DBLP:conf/isbi/MercanMT0WGC20, author = {Caner Mercan and G. C. A. M. Mooij and David Tellez and Johannes Lotz and Nick Weiss and Marcel van Gerven and Francesco Ciompi}, title = {Virtual Staining for Mitosis Detection in Breast Histopathology}, booktitle = {{ISBI}}, pages = {1770--1774}, publisher = {{IEEE}}, year = {2020} }
@article{DBLP:journals/corr/abs-2003-07801, author = {Caner Mercan and Germonda Reijnen{-}Mooij and David Tellez Martin and Johannes Lotz and Nick Weiss and Marcel van Gerven and Francesco Ciompi}, title = {Virtual staining for mitosis detection in Breast Histopathology}, journal = {CoRR}, volume = {abs/2003.07801}, year = {2020} }
@article{DBLP:journals/corr/abs-1903-12063, author = {Johannes Lotz and Nick Weiss and Stefan Heldmann}, title = {Robust, fast and accurate: a 3-step method for automatic histological image registration}, journal = {CoRR}, volume = {abs/1903.12063}, year = {2019} }
@article{DBLP:journals/corr/abs-1911-12604, author = {Patrick Peltzer and Johannes Lotz and Uwe Naumann}, title = {Eigen-AD: Algorithmic Differentiation of the Eigen Library}, journal = {CoRR}, volume = {abs/1911.12604}, year = {2019} }
@article{DBLP:journals/corr/abs-1808-05883, author = {Wouter Bulten and P{\'{e}}ter B{\'{a}}ndi and Jeffrey Hoven and Rob van de Loo and Johannes Lotz and Nick Weiss and Jeroen van der Laak and Bram van Ginneken and Christina A. Hulsbergen van de Kaa and Geert Litjens}, title = {Epithelium segmentation using deep learning in H{\&}E-stained prostate specimens with immunohistochemistry as reference standard}, journal = {CoRR}, volume = {abs/1808.05883}, year = {2018} }
@article{DBLP:journals/tbe/LotzOMPGLHLGWLG16, author = {Johannes Lotz and Janine Olesch and Benedikt M{\"{u}}ller and Thomas Polzin and P. Galuschka and J. M. Lotz and Stefan Heldmann and Hendrik Laue and Margarita Gonzalez{-}Vallinas and Arne Warth and Bernd Lahrmann and Niels Grabe and Oliver Sedlaczek and Kai Breuhahn and Jan Modersitzki}, title = {Patch-Based Nonlinear Image Registration for Gigapixel Whole Slide Images}, journal = {{IEEE} Trans. Biomed. Eng.}, volume = {63}, number = {9}, pages = {1812--1819}, year = {2016} }
@inproceedings{DBLP:conf/iccS/LotzSN16, author = {Johannes Lotz and Marc Schwalbach and Uwe Naumann}, title = {A Case Study in Adjoint Sensitivity Analysis of Parameter Calibration}, booktitle = {{ICCS}}, series = {Procedia Computer Science}, volume = {80}, pages = {201--211}, publisher = {Elsevier}, year = {2016} }
@inproceedings{DBLP:conf/iccS/SafiranLN16, author = {Niloofar Safiran and Johannes Lotz and Uwe Naumann}, title = {Algorithmic Differentiation of Numerical Methods: Second-Order Adjoint Solvers for Parameterized Systems of Nonlinear Equations}, booktitle = {{ICCS}}, series = {Procedia Computer Science}, volume = {80}, pages = {2231--2235}, publisher = {Elsevier}, year = {2016} }
@inproceedings{DBLP:conf/siamcsc/0001NM16, author = {Johannes Lotz and Uwe Naumann and Sumit Mitra}, title = {Mixed Integer Programming for Call Tree Reversal}, booktitle = {{CSC}}, pages = {83--91}, publisher = {{SIAM}}, year = {2016} }
@article{DBLP:journals/toms/NaumannLLT15, author = {Uwe Naumann and Johannes Lotz and Klaus Leppkes and Markus Towara}, title = {Algorithmic Differentiation of Numerical Methods: Tangent and Adjoint Solvers for Parameterized Systems of Nonlinear Equations}, journal = {{ACM} Trans. Math. Softw.}, volume = {41}, number = {4}, pages = {26:1--26:21}, year = {2015} }
@inproceedings{DBLP:conf/bildmed/WeissLM15, author = {Nick Weiss and Johannes Lotz and Jan Modersitzki}, title = {Multimodal Image Registration in Digital Pathology Using Cell Nuclei Densities}, booktitle = {Bildverarbeitung f{\"{u}}r die Medizin}, series = {Informatik Aktuell}, pages = {245--250}, publisher = {Springer}, year = {2015} }
@inproceedings{DBLP:conf/curac/GuntherBGHKOKLO15, author = {Matthias G{\"{u}}nther and Tobias Bartscherer and Joachim Georgii and Holger Hewener and Till Kipshagen and Darko Ojdanic and Bojan Kovec and Johannes Lotz and Janine Olesch and Sven Rothl{\"{u}}bbers and Michael Schwenke and Daniel Speicher and Steffen H. Tretbar}, title = {Towards MR-guided biopsy outside the MR-scanner: information fusion based on simultaneous ultrasound-MR imaging and real-time motion tracking}, booktitle = {{CURAC}}, pages = {15--16}, year = {2015} }
@inproceedings{DBLP:conf/iccS/LotzNHPM15, author = {Johannes Lotz and Uwe Naumann and Ralf Hannemann{-}Tam{\'{a}}s and Tobias Ploch and Alexander Mitsos}, title = {Higher-order Discrete Adjoint {ODE} Solver in {C++} for Dynamic Optimization}, booktitle = {{ICCS}}, series = {Procedia Computer Science}, volume = {51}, pages = {256--265}, publisher = {Elsevier}, year = {2015} }
@inproceedings{DBLP:conf/iccS/SafiranLN15, author = {Niloofar Safiran and Johannes Lotz and Uwe Naumann}, title = {Second-order Tangent Solvers for Systems of Parameterized Nonlinear Equations}, booktitle = {{ICCS}}, series = {Procedia Computer Science}, volume = {51}, pages = {231--238}, publisher = {Elsevier}, year = {2015} }
@inproceedings{DBLP:conf/midp/0002B0BGHHLLOSS14, author = {Johannes Lotz and Judith Berger and Benedikt M{\"{u}}ller and Kai Breuhahn and Niels Grabe and Stefan Heldmann and Andr{\'{e}} Homeyer and Bernd Lahrmann and Hendrik Laue and Janine Olesch and Michael Schwier and Oliver Sedlaczek and Arne Warth}, title = {Zooming in: high resolution 3D reconstruction of differently stained histological whole slide images}, booktitle = {Medical Imaging: Digital Pathology}, series = {{SPIE} Proceedings}, volume = {9041}, pages = {904104}, publisher = {{SPIE}}, year = {2014} }
@article{DBLP:journals/tcst/LoheLCK13, author = {Johannes L{\"{o}}he and Marc Lotz and Mark Cannon and Basil Kouvaritakis}, title = {Application of Optimal Control Algorithm to Inertia Friction Welding Process}, journal = {{IEEE} Trans. Control. Syst. Technol.}, volume = {21}, number = {3}, pages = {891--898}, year = {2013} }
@inproceedings{DBLP:conf/europar/LotzNSS13, author = {Johannes Lotz and Uwe Naumann and Max Sagebaum and Michel Schanen}, title = {Discrete Adjoints of PETSc through dco/c++ and Adjoint {MPI}}, booktitle = {Euro-Par}, series = {Lecture Notes in Computer Science}, volume = {8097}, pages = {497--507}, publisher = {Springer}, year = {2013} }
@inproceedings{DBLP:conf/iccS/SagebaumGNLL13, author = {Max Sagebaum and Nicolas R. Gauger and Uwe Naumann and Johannes Lotz and Klaus Leppkes}, title = {Algorithmic Differentiation of a Complex {C++} Code with Underlying Libraries}, booktitle = {{ICCS}}, series = {Procedia Computer Science}, volume = {18}, pages = {208--217}, publisher = {Elsevier}, year = {2013} }
@inproceedings{DBLP:conf/miip/Lotz0OG13, author = {Johannes Lotz and Bernd Fischer and Janine Olesch and Matthias G{\"{u}}nther}, title = {Real time motion analysis in 4D medical imaging using conditional density propagation}, booktitle = {Medical Imaging: Image Processing}, series = {{SPIE} Proceedings}, volume = {8669}, pages = {86690T}, publisher = {{SPIE}}, year = {2013} }
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