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@article{DBLP:journals/ploscb/AlvarezMCBBBPPV24, author = {Pablo Alvarez and Marouane El Mouss and Maxime Calka and Anca Belme and Gilles Berillon and Pauline Brige and Yohan Payan and Pascal Perrier and Am{\'{e}}lie Vialet}, title = {Predicting primate tongue morphology based on geometrical skull matching. {A} first step towards an application on fossil hominins}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011808}, doi = {10.1371/JOURNAL.PCBI.1011808}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/AlvarezMCBBBPPV24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/AnPC24, author = {Hong An and J. Chris Pires and Gavin C. Conant}, title = {Gene expression bias between the subgenomes of allopolyploid hybrids is an emergent property of the kinetics of expression}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011803}, doi = {10.1371/JOURNAL.PCBI.1011803}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/AnPC24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/BaerBPAPL24, author = {Lachlan Baer and Karissa Barthelson and John H. Postlethwait and David L. Adelson and Stephen M. Pederson and Michael Lardelli}, title = {Differential allelic representation {(DAR)} identifies candidate eQTLs and improves transcriptome analysis}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011868}, doi = {10.1371/JOURNAL.PCBI.1011868}, timestamp = {Mon, 01 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/BaerBPAPL24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/BarreatK24, author = {Jose Gabriel Nino Barreat and Aris Katzourakis}, title = {Ecological and evolutionary dynamics of cell-virus-virophage systems}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1010925}, doi = {10.1371/JOURNAL.PCBI.1010925}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/BarreatK24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/BarryG24, author = {Martin L. L. R. Barry and Wulfram Gerstner}, title = {Fast adaptation to rule switching using neuronal surprise}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011839}, doi = {10.1371/JOURNAL.PCBI.1011839}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/BarryG24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/BartaK24, author = {Tomas Barta and Lubomir Kostal}, title = {Shared input and recurrency in neural networks for metabolically efficient information transmission}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011896}, doi = {10.1371/JOURNAL.PCBI.1011896}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/BartaK24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/BeerB24, author = {Chen Beer and Omri Barak}, title = {Revealing and reshaping attractor dynamics in large networks of cortical neurons}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011784}, doi = {10.1371/JOURNAL.PCBI.1011784}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/BeerB24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/BirdCJ24, author = {Alexander D. Bird and Hermann Cuntz and Peter Jedlicka}, title = {Robust and consistent measures of pattern separation based on information theory and demonstrated in the dentate gyrus}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1010706}, doi = {10.1371/JOURNAL.PCBI.1010706}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/BirdCJ24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/Borst24, author = {Alexander Borst}, title = {Connectivity Matrix Seriation via Relaxation}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011904}, doi = {10.1371/JOURNAL.PCBI.1011904}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/Borst24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/BouhaddaniHUMBHH24, author = {Said el Bouhaddani and Matthias H{\"{o}}llerhage and Hae{-}Won Uh and Claudia Moebius and Marc Bickle and G{\"{u}}nter U. H{\"{o}}glinger and Jeanine J. Houwing{-}Duistermaat}, title = {Statistical integration of multi-omics and drug screening data from cell lines}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011809}, doi = {10.1371/JOURNAL.PCBI.1011809}, timestamp = {Mon, 01 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/BouhaddaniHUMBHH24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/BovenDWJHDFSHBEHEHBWBRBKB24, author = {Michiel van Boven and Christiaan H. van Dorp and Ilse Westerhof and Vincent Jaddoe and Valerie Heuvelman and Liesbeth Duijts and Elandri Fourie and Judith Sluiter{-}Post and Marlies A. van Houten and Paul Badoux and Sjoerd Euser and Bjorn Herpers and Dirk Eggink and Marieke de Hoog and Trisja Boom and Joanne Wildenbeest and Louis Bont and Ganna Rozhnova and Marc J. M. Bonten and Mirjam E. Kretzschmar and Patricia Bruijning{-}Verhagen}, title = {Estimation of introduction and transmission rates of SARS-CoV-2 in a prospective household study}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011832}, doi = {10.1371/JOURNAL.PCBI.1011832}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/BovenDWJHDFSHBEHEHBWBRBKB24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/BritoG24, author = {Carlos S. N. Brito and Wulfram Gerstner}, title = {Learning what matters: Synaptic plasticity with invariance to second-order input correlations}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011844}, doi = {10.1371/JOURNAL.PCBI.1011844}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/BritoG24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/BrodersenAKBFFGHKMMTTYFVA24, author = {Paul J. N. Brodersen and Hannah Alfonsa and Lukas B. Krone and Cristina Blanco{-}Duque and Angus S. Fisk and Sarah J. Flaherty and Mathilde C. C. Guillaumin and Yi{-}Ge Huang and Martin C. Kahn and Laura E. McKillop and Linus Milinski and Lewis Taylor and Christopher W. Thomas and Tomoko Yamagata and Russell G. Foster and Vladyslav V. Vyazovskiy and Colin J. Akerman}, title = {Somnotate: {A} probabilistic sleep stage classifier for studying vigilance state transitions}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011793}, doi = {10.1371/JOURNAL.PCBI.1011793}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/BrodersenAKBFFGHKMMTTYFVA24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/BruelACSLLRI24, author = {Alice Bruel and Ignacio Abad{\'{\i}}a and Thibault Collin and Icare Sakr and Henri Lorach and Niceto R. Luque and Eduardo Ros and Auke Jan Ijspeert}, title = {The spinal cord facilitates cerebellar upper limb motor learning and control; inputs from neuromusculoskeletal simulation}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011008}, doi = {10.1371/JOURNAL.PCBI.1011008}, timestamp = {Fri, 22 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/BruelACSLLRI24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/CastilloLCS24, author = {Lucas Castillo and Pablo Le{\'{o}}n{-}Villagr{\'{a}} and Nick Chater and Adam Sanborn}, title = {Explaining the flaws in human random generation as local sampling with momentum}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011739}, doi = {10.1371/JOURNAL.PCBI.1011739}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/CastilloLCS24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/ChanRMRWJLANBBKEESPLFB24, author = {Louis Yat Hin Chan and Gunnar R{\o} and J{\o}rgen Eriksson Midtb{\o} and Francesco Di Ruscio and Sara Sofie Viksmoen Watle and Lene Kristine Juvet and Jasper Littmann and Preben Aavitsland and Karin Maria Nyg{\aa}rd and Are Stuwitz Berg and Geir Bukholm and Anja Br{\aa}then Kristoffersen and Kenth Eng{\o}{-}Monsen and Solveig Engebretsen and David Swanson and Alfonso Diz{-}Lois Palomares and Jonas Christoffer Lindstr{\o}m and Arnoldo Frigessi and Birgitte Freiesleben de Blasio}, title = {Modeling geographic vaccination strategies for {COVID-19} in Norway}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011426}, doi = {10.1371/JOURNAL.PCBI.1011426}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/ChanRMRWJLANBBKEESPLFB24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/ChenCCKK24, author = {Li{-}Dunn Chen and Michael A. Caprio and Devin M. Chen and Andrew J. Kouba and Carrie K. Kouba}, title = {Enhancing predictive performance for spectroscopic studies in wildlife science through a multi-model approach: {A} case study for species classification of live amphibians}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011876}, doi = {10.1371/JOURNAL.PCBI.1011876}, timestamp = {Wed, 20 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/ChenCCKK24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/ChenWSL24, author = {Hua{-}Chang Chen and Jing Wang and Yu Shyr and Qi Liu}, title = {FindAdapt: {A} python package for fast and accurate adapter detection in small {RNA} sequencing}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011786}, doi = {10.1371/JOURNAL.PCBI.1011786}, timestamp = {Mon, 01 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/ChenWSL24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/ChenWWZ24, author = {Yaojia Chen and Jiacheng Wang and Chunyu Wang and Quan Zou}, title = {AutoEdge-CCP: {A} novel approach for predicting cancer-associated circRNAs and drugs based on automated edge embedding}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011851}, doi = {10.1371/JOURNAL.PCBI.1011851}, timestamp = {Fri, 22 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/ChenWWZ24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/CockxFCAASSK24, author = {Bastiaan J. R. Cockx and Tim Foster and Robert J. Clegg and Kieran Alden and Sankalp Arya and Dov J. Stekel and Barth F. Smets and Jan{-}Ulrich Kreft}, title = {Is it selfish to be filamentous in biofilms? Individual-based modeling links microbial growth strategies with morphology using the new and modular iDynoMiCS 2.0}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011303}, doi = {10.1371/JOURNAL.PCBI.1011303}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/CockxFCAASSK24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/CookeDWRFVEPJ24, author = {Juliette Cooke and Maxime Delmas and Cecilia Wieder and Pablo Rodr{\'{\i}}guez{-}Mier and Cl{\'{e}}ment Frainay and Florence Vinson and Timothy M. D. Ebbels and Nathalie Poupin and Fabien Jourdan}, title = {Genome scale metabolic network modelling for metabolic profile predictions}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011381}, doi = {10.1371/JOURNAL.PCBI.1011381}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/CookeDWRFVEPJ24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/CopelandZHY24, author = {Raymond Copeland and Christopher Zhang and Brian K. Hammer and Peter J. Yunker}, title = {Spatial constraints and stochastic seeding subvert microbial arms race}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011807}, doi = {10.1371/JOURNAL.PCBI.1011807}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/CopelandZHY24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/DallOlioSTTBSEMMCSPGHBC24, author = {Daniele Dall'Olio and Eric Str{\"{a}}ng and Amin T. Turki and Jesse M. Tettero and Martje Barbus and Renate Schulze{-}Rath and Javier Martinez Elicegui and Tommaso Matteuzzi and Alessandra Merlotti and Luciana Carota and Claudia Sala and Matteo G. Della Porta and Enrico Giampieri and Jes{\'{u}}s Mar{\'{\i}}a Hern{\'{a}}ndez{-}Rivas and Lars Bullinger and Gastone C. Castellani}, title = {Covering Hierarchical Dirichlet Mixture Models on binary data to enhance genomic stratifications in onco-hematology}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011299}, doi = {10.1371/JOURNAL.PCBI.1011299}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/DallOlioSTTBSEMMCSPGHBC24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/DattaKSVBXD3J24, author = {Meenal Datta and McCarthy Kennedy and Saeed Siri and Laura E. Via and James W. Baish and Lei Xu and V{\'{e}}ronique Dartois and Clifton E. Barry and Rakesh K. Jain}, title = {Mathematical model of oxygen, nutrient, and drug transport in tuberculosis granulomas}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011847}, doi = {10.1371/JOURNAL.PCBI.1011847}, timestamp = {Mon, 01 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/DattaKSVBXD3J24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/DominguezGarciaK24, author = {Virginia Dominguez{-}Garcia and Sonia K{\'{e}}fi}, title = {The structure and robustness of ecological networks with two interaction types}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011770}, doi = {10.1371/JOURNAL.PCBI.1011770}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/DominguezGarciaK24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/DoughertyMRJCNSKWP24, author = {Bonnie V. Dougherty and Connor J. Moore and Kristopher D. Rawls and Matthew L. Jenior and Bryan Chun and Sarbajeet Nagdas and Jeffrey J. Saucerman and Glynis L. Kolling and Anders Wallqvist and Jason A. Papin}, title = {Identifying metabolic adaptations characteristic of cardiotoxicity using paired transcriptomics and metabolomics data integrated with a computational model of heart metabolism}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011919}, doi = {10.1371/JOURNAL.PCBI.1011919}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/DoughertyMRJCNSKWP24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/DunkHS24, author = {Samuel H. A. von der Dunk and Paulien Hogeweg and Berend Snel}, title = {Intracellular signaling in proto-eukaryotes evolves to alleviate regulatory conflicts of endosymbiosis}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011860}, doi = {10.1371/JOURNAL.PCBI.1011860}, timestamp = {Mon, 01 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/DunkHS24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/Ellwood24, author = {Ian T. Ellwood}, title = {Short-term Hebbian learning can implement transformer-like attention}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011843}, doi = {10.1371/JOURNAL.PCBI.1011843}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/Ellwood24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/ElmozninoB24, author = {Eric Elmoznino and Michael F. Bonner}, title = {High-performing neural network models of visual cortex benefit from high latent dimensionality}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011792}, doi = {10.1371/JOURNAL.PCBI.1011792}, timestamp = {Fri, 22 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/ElmozninoB24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/EschweilerYBLRJBS24, author = {Dennis Eschweiler and R{\"{u}}veyda Yilmaz and Matisse Baumann and Ina Laube and Rijo Roy and Abin Jose and Daniel Br{\"{u}}ckner and Johannes Stegmaier}, title = {Denoising diffusion probabilistic models for generation of realistic fully-annotated microscopy image datasets}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011890}, doi = {10.1371/JOURNAL.PCBI.1011890}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/EschweilerYBLRJBS24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/FazliB24, author = {Mehran Fazli and Richard Bertram}, title = {Conversion of spikers to bursters in pituitary cell networks: Is it better to disperse for maximum exposure or circle the wagons?}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011811}, doi = {10.1371/JOURNAL.PCBI.1011811}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/FazliB24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/FengB24, author = {Yu Feng and Nicolas Brunel}, title = {Attractor neural networks with double well synapses}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011354}, doi = {10.1371/JOURNAL.PCBI.1011354}, timestamp = {Mon, 01 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/FengB24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/FengGZBWPDDHFL24, author = {Jiarui Feng and S. Peter Goedegebuure and Amanda Zeng and Ye Bi and Ting Wang and Philip R. O. Payne and Li Ding and David DeNardo and William Hawkins and Ryan C. Fields and Fuhai Li}, title = {sc2MeNetDrug: {A} computational tool to uncover inter-cell signaling targets and identify relevant drugs based on single cell RNA-seq data}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011785}, doi = {10.1371/JOURNAL.PCBI.1011785}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/FengGZBWPDDHFL24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/FengMRM24, author = {Zhijie Feng and Robert Marsland III and Jason W. Rocks and Pankaj Mehta}, title = {Emergent competition shapes top-down versus bottom-up control in multi-trophic ecosystems}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011675}, doi = {10.1371/JOURNAL.PCBI.1011675}, timestamp = {Mon, 01 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/FengMRM24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/FernholzNBK24, author = {Martin H. P. Fernholz and Drago A. Guggiana Nilo and Tobias Bonhoeffer and Andreas M. Kist}, title = {DeepD3, an open framework for automated quantification of dendritic spines}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011774}, doi = {10.1371/JOURNAL.PCBI.1011774}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/FernholzNBK24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/Frost24, author = {H. Robert Frost}, title = {Tissue-adjusted pathway analysis of cancer {(TPAC):} {A} novel approach for quantifying tumor-specific gene set dysregulation relative to normal tissue}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011717}, doi = {10.1371/JOURNAL.PCBI.1011717}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/Frost24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/GerNWS24, author = {Yoav Ger and Eliya Nachmani and Lior Wolf and Nitzan Shahar}, title = {Harnessing the flexibility of neural networks to predict dynamic theoretical parameters underlying human choice behavior}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011678}, doi = {10.1371/JOURNAL.PCBI.1011678}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/GerNWS24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/GodivierLWHN24, author = {Josepha Godivier and Elizabeth A. Lawrence and Mengdi Wang and Chrissy L. Hammond and Niamh C. Nowlan}, title = {Compressive stress gradients direct mechanoregulation of anisotropic growth in the zebrafish jaw joint}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1010940}, doi = {10.1371/JOURNAL.PCBI.1010940}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/GodivierLWHN24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/Goedhart24, author = {Joachim Goedhart}, title = {Studentsourcing - Aggregating and reusing data from a practical cell biology course}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011836}, doi = {10.1371/JOURNAL.PCBI.1011836}, timestamp = {Mon, 01 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/Goedhart24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/GrodenMSDBCJ24, author = {Moritz Groden and Hannah M. Moessinger and Barbara Schaffran and Javier DeFelipe and Ruth Benavides{-}Piccione and Hermann Cuntz and Peter Jedlicka}, title = {A biologically inspired repair mechanism for neuronal reconstructions with a focus on human dendrites}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011267}, doi = {10.1371/JOURNAL.PCBI.1011267}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/GrodenMSDBCJ24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/GrootswagersRSC24, author = {Tijl Grootswagers and Amanda K. Robinson and Sophia M. Shatek and Thomas A. Carlson}, title = {Mapping the dynamics of visual feature coding: Insights into perception and integration}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011760}, doi = {10.1371/JOURNAL.PCBI.1011760}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/GrootswagersRSC24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/GrunnillAMBCTAGBTABW24, author = {Martin Grunnill and Julien Arino and Zachary McCarthy and Nicola Luigi Bragazzi and Laurent Coudeville and Edward W. Thommes and Amine Amiche and Abbas Ghasemi and Lydia Bourouiba and Mohammadali Tofighi and Ali Asgary and Mortaza Baky{-}Haskuee and Jianhong Wu}, title = {Modelling disease mitigation at mass gatherings: {A} case study of {COVID-19} at the 2022 {FIFA} World Cup}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011018}, doi = {10.1371/JOURNAL.PCBI.1011018}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/GrunnillAMBCTAGBTABW24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/GuoDTZBZZJF24, author = {Zhenxing Guo and Daoyu Duan and Wen Tang and Julia Zhu and William S. Bush and Liangliang Zhang and Xiaofeng Zhu and Fulai Jin and Hao Feng}, title = {magpie: {A} power evaluation method for differential {RNA} methylation analysis in N6-methyladenosine sequencing}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011875}, doi = {10.1371/JOURNAL.PCBI.1011875}, timestamp = {Mon, 01 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/GuoDTZBZZJF24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/HayGMVMHR24, author = {Quintessa Hay and Christopher Grubb and Sarah Minucci and Michael S. Valentine and Jennifer Van Mullekom and Rebecca L. Heise and Angela M. Reynolds}, title = {Age-dependent ventilator-induced lung injury: Mathematical modeling, experimental data, and statistical analysis}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011113}, doi = {10.1371/JOURNAL.PCBI.1011113}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/HayGMVMHR24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/HiltonH24, author = {Joe Hilton and Ian M. Hall}, title = {A beta-Poisson model for infectious disease transmission}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011856}, doi = {10.1371/JOURNAL.PCBI.1011856}, timestamp = {Mon, 29 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/HiltonH24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/HimbertGBNR24, author = {Sebastian Himbert and Dorian Gaboo and Emre Brookes and John F. Nagle and Maikel C. Rheinst{\"{a}}dter}, title = {{MEDUSA:} {A} cloud-based tool for the analysis of X-ray diffuse scattering to obtain the bending modulus from oriented membrane stacks}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011749}, doi = {10.1371/JOURNAL.PCBI.1011749}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/HimbertGBNR24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/HuangCH24, author = {Yong{-}Jin Huang and Chun{-}Wei Chang and Chih{-}Hao Hsieh}, title = {Detecting shifts in nonlinear dynamics using Empirical Dynamic Modeling with Nested-Library Analysis}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011759}, doi = {10.1371/JOURNAL.PCBI.1011759}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/HuangCH24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/IaconoCDFFGVHRLSVSVN24, author = {Giovanni Lo Iacono and Alasdair J. C. Cook and Gianne Derks and Lora E. Fleming and Nigel French and Emma L. Gillingham and Laura C. Gonzalez Villeta and Clare Heaviside and Roberto La Ragione and Giovanni Leonardi and Christophe E. Sarran and Sotiris Vardoulakis and Francis Senyah and Arnoud H. M. van Vliet and Gordon Nichols}, title = {A mathematical, classical stratification modeling approach to disentangling the impact of weather on infectious diseases: {A} case study using spatio-temporally disaggregated Campylobacter surveillance data for England and Wales}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011714}, doi = {10.1371/JOURNAL.PCBI.1011714}, timestamp = {Mon, 11 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/IaconoCDFFGVHRLSVSVN24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/IdesisGFVPPGED24, author = {Sebastian Idesis and Sebasti{\'{a}}n Geli and Joshua Faskowitz and Jakub Vohryzek and Yonatan Sanz Perl and Florian Pieper and Edgar E. Galindo{-}Leon and Andreas K. Engel and Gustavo Deco}, title = {Functional hierarchies in brain dynamics characterized by signal reversibility in ferret cortex}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011818}, doi = {10.1371/JOURNAL.PCBI.1011818}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/IdesisGFVPPGED24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/JamborB24, author = {Helena Klara Jambor and Martin Bornh{\"{a}}user}, title = {Ten simple rules for designing graphical abstracts}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011789}, doi = {10.1371/JOURNAL.PCBI.1011789}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/JamborB24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/JardonValadezU24, author = {Eduardo Jard{\'{o}}n{-}Valadez and Alfredo Ulloa{-}Aguirre}, title = {Tracking conformational transitions of the gonadotropin hormone receptors in a bilayer of {(SDPC)} poly-unsaturated lipids from all-atom molecular dynamics simulations}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011415}, doi = {10.1371/JOURNAL.PCBI.1011415}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/JardonValadezU24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/JiangR24, author = {Linxing Preston Jiang and Rajesh P. N. Rao}, title = {Dynamic predictive coding: {A} model of hierarchical sequence learning and prediction in the neocortex}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011801}, doi = {10.1371/JOURNAL.PCBI.1011801}, timestamp = {Mon, 01 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/JiangR24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/JongABMMS24, author = {Martijn A. de Jong and Esm{\'{e}}e Adegeest and No{\'{e}}mie M. L. P. B{\'{e}}renger{-}Currias and Maria Mircea and Roeland M. H. Merks and Stefan Semrau}, title = {The shapes of elongating gastruloids are consistent with convergent extension driven by a combination of active cell crawling and differential adhesion}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011825}, doi = {10.1371/JOURNAL.PCBI.1011825}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/JongABMMS24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/Kaiser24, author = {Marcus Kaiser}, title = {Ten simple rules for establishing an experimental lab}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011778}, doi = {10.1371/JOURNAL.PCBI.1011778}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/Kaiser24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/KaliradS24, author = {Ata Kalirad and Ralf J. Sommer}, title = {Spatial and temporal heterogeneity alter the cost of plasticity in Pristionchus pacificus}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011823}, doi = {10.1371/JOURNAL.PCBI.1011823}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/KaliradS24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/KennedyRUCICPHBBHBBPBBBKASCZMKSR24, author = {Keith E. Kennedy and Nicole Kerlero de Rosbo and Antonio Uccelli and Maria Cellerino and Federico Ivaldi and Paola Contini and Raffaele De Palma and Hanne F. Harbo and Tone Berge and Steffan D. Bos and Einar A. H{\o}gest{\o}l and Synne Brune{-}Ingebretsen and Sigrid A. de Rodez Benavent and Friedemann Paul and Alexander U. Brandt and Priscilla B{\"{a}}cker{-}Koduah and Janina Behrens and Joseph Kuchling and Susanna Asseyer and Michael Scheel and Claudia Chien and Hanna Zimmermann and Seyedamirhosein Motamedi and Josef Kauer{-}Bonin and Julio Saez{-}Rodriguez and Melanie Rinas and Leonidas G. Alexopoulos and Magi Andorra and Sara Llufriu and Albert Saiz and Yolanda Blanco and Eloy Martinez{-}Heras and Elisabeth Solana and Irene Pulido{-}Valdeolivas and Elena H. Martinez{-}Lapiscina and Jordi Garc{\'{\i}}a{-}Ojalvo and Pablo Villoslada}, title = {Multiscale networks in multiple sclerosis}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1010980}, doi = {10.1371/JOURNAL.PCBI.1010980}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/KennedyRUCICPHBBHBBPBBBKASCZMKSR24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/KhabazYPJSDKKNCWBLKMP24, author = {Kameel Khabaz and Karen Yuan and Joseph Pugar and David Jiang and Seth Sankary and Sanjeev Dhara and Junsung Kim and Janet Kang and Nhung Nguyen and Kathleen Cao and Newell Washburn and Nicole Bohr and Cheong Jun Lee and Gordon Kindlmann and Ross Milner and Luka Pocivavsek}, title = {The geometric evolution of aortic dissections: Predicting surgical success using fluctuations in integrated Gaussian curvature}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011815}, doi = {10.1371/JOURNAL.PCBI.1011815}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/KhabazYPJSDKKNCWBLKMP24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/KingBP24, author = {Connor R. King and Casey{-}Tyler Berezin and Jean Peccoud}, title = {Stochastic model of vesicular stomatitis virus replication reveals mutational effects on virion production}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011373}, doi = {10.1371/JOURNAL.PCBI.1011373}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/KingBP24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/KingTPHS24, author = {Eshan S. King and Dagim S. Tadele and Beck Pierce and Michael Hinczewski and Jacob G. Scott}, title = {Diverse mutant selection windows shape spatial heterogeneity in evolving populations}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011878}, doi = {10.1371/JOURNAL.PCBI.1011878}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/KingTPHS24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/KlamserZMBJSB24, author = {Pascal P. Klamser and Adrian Zachariae and Benjamin F. Maier and Olga Baranov and Clara Jongen and Frank Schlosser and Dirk Brockmann}, title = {Inferring country-specific import risk of diseases from the world air transportation network}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011775}, doi = {10.1371/JOURNAL.PCBI.1011775}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/KlamserZMBJSB24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/KnochelKH24, author = {Jane Kn{\"{o}}chel and Charlotte Kloft and Wilhelm Huisinga}, title = {Index analysis: An approach to understand signal transduction with application to the {EGFR} signalling pathway}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011777}, doi = {10.1371/JOURNAL.PCBI.1011777}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/KnochelKH24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/KohsokabeKK24, author = {Takahiro Kohsokabe and Shigeru Kuratanai and Kunihiko Kaneko}, title = {Developmental hourglass: Verification by numerical evolution and elucidation by dynamical-systems theory}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011867}, doi = {10.1371/JOURNAL.PCBI.1011867}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/KohsokabeKK24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/KoryNSKMMMPB24, author = {Jakub K{\"{o}}ry and Vedang Narain and Bernadette J. Stolz and Jakob Kaeppler and Bostjan Markelc and Ruth J. Muschel and Philip K. Maini and Joe Pitt{-}Francis and Helen M. Byrne}, title = {Enhanced perfusion following exposure to radiotherapy: {A} theoretical investigation}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011252}, doi = {10.1371/JOURNAL.PCBI.1011252}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/KoryNSKMMMPB24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/KosekiHO24, author = {Shunsuke Koseki and Mitsuhiro Hayashibe and Dai Owaki}, title = {Identifying essential factors for energy-efficient walking control across a wide range of velocities in reflex-based musculoskeletal systems}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011771}, doi = {10.1371/JOURNAL.PCBI.1011771}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/KosekiHO24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/KozielskaW24, author = {Magdalena Kozielska and Franz J. Weissing}, title = {A neural network model for the evolution of learning in changing environments}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011840}, doi = {10.1371/JOURNAL.PCBI.1011840}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/KozielskaW24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/KrongauzAK24, author = {David L. Krongauz and Amir Ayali and Gal A. Kaminka}, title = {Vision-based collective motion: {A} locust-inspired reductionist model}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011796}, doi = {10.1371/JOURNAL.PCBI.1011796}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/KrongauzAK24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/LaPierreP24, author = {Nathan LaPierre and Harold Pimentel}, title = {Accounting for isoform expression increases power to identify genetic regulation of gene expression}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011857}, doi = {10.1371/JOURNAL.PCBI.1011857}, timestamp = {Mon, 01 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/LaPierreP24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/LambLSOPCYR24, author = {Kieran D. Lamb and Martha M. Luka and Megan Saathoff and Richard J. Orton and My V. T. Phan and Matthew Cotten and Ke Yuan and David L. Robertson}, title = {Mutational signature dynamics indicate SARS-CoV-2's evolutionary capacity is driven by host antiviral molecules}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011795}, doi = {10.1371/JOURNAL.PCBI.1011795}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/LambLSOPCYR24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/LangPBWN24, author = {Paul F. Lang and David R. Penas and Julio R. Banga and Daniel Weindl and B{\'{e}}la Nov{\'{a}}k}, title = {Reusable rule-based cell cycle model explains compartment-resolved dynamics of 16 observables in {RPE-1} cells}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011151}, doi = {10.1371/JOURNAL.PCBI.1011151}, timestamp = {Fri, 22 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/LangPBWN24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/LawsonKeisterZNFM24, author = {Elizabeth Lawson{-}Keister and Tao Zhang and Fatemeh Nazari and Fran{\c{c}}ois Fagotto and M. Lisa Manning}, title = {Differences in boundary behavior in the 3D vertex and Voronoi models}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011724}, doi = {10.1371/JOURNAL.PCBI.1011724}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/LawsonKeisterZNFM24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/LeeK24, author = {Sangjeong Lee and Hyunwoo Kim}, title = {Bidirectional de novo peptide sequencing using a transformer model}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011892}, doi = {10.1371/JOURNAL.PCBI.1011892}, timestamp = {Sat, 30 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/LeeK24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/LiK24, author = {Pan Li and Jae Kyoung Kim}, title = {Circadian regulation of sinoatrial nodal cell pacemaking function: Dissecting the roles of autonomic control, body temperature, and local circadian rhythmicity}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011907}, doi = {10.1371/JOURNAL.PCBI.1011907}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/LiK24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/LimQ24, author = {Hong Seo Lim and Peng Qiu}, title = {Quantifying the clusterness and trajectoriness of single-cell RNA-seq data}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011866}, doi = {10.1371/JOURNAL.PCBI.1011866}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/LimQ24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/LinDUG24, author = {Chin{-}Hsuan Sophie Lin and Trang Thuy Do and Lee Unsworth and Marta I. Garrido}, title = {Are we really Bayesian? Probabilistic inference shows sub-optimal knowledge transfer}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011769}, doi = {10.1371/JOURNAL.PCBI.1011769}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/LinDUG24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/LiuGJMSTZWDT24, author = {Xiang Liu and Nancy Gillis and Chang Jiang and Anthony McCofie and Timothy I. Shaw and Aik Choon Tan and Bo Zhao and Lixin Wan and Derek R. Duckett and Mingxiang Teng}, title = {An Epigenomic fingerprint of human cancers by landscape interrogation of super enhancers at the constituent level}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011873}, doi = {10.1371/JOURNAL.PCBI.1011873}, timestamp = {Mon, 01 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/LiuGJMSTZWDT24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/LiuHZXZS24, author = {Te Liu and Sichao Huang and Qian Zhang and Yu Xia and Manjie Zhang and Bin Sun}, title = {Reconciling ASPP-p53 binding mode discrepancies through an ensemble binding framework that bridges crystallography and {NMR} data}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011519}, doi = {10.1371/JOURNAL.PCBI.1011519}, timestamp = {Fri, 29 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/LiuHZXZS24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/LoellFMCCW24, author = {Kaiser J. Loell and Ryan Z. Friedman and Connie A. Myers and Joseph C. Corbo and Barak A. Cohen and Michael A. White}, title = {Transcription factor interactions explain the context-dependent activity of {CRX} binding sites}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011802}, doi = {10.1371/JOURNAL.PCBI.1011802}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/LoellFMCCW24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/LouarnCBFDSC24, author = {Marine Louarn and Guillaume Collet and {\`{E}}ve Barr{\'{e}} and Thierry Fest and Olivier Dameron and Anne Siegel and Fabrice Chatonnet}, title = {Regulus infers signed regulatory relations from few samples' information using discretization and likelihood constraints}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011816}, doi = {10.1371/JOURNAL.PCBI.1011816}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/LouarnCBFDSC24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/LuppiSSH24, author = {Janne J. Luppi and Cornelis J. Stam and Philip Scheltens and Willem de Haan}, title = {Virtual neural network-guided optimization of non-invasive brain stimulation in Alzheimer's disease}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011164}, doi = {10.1371/JOURNAL.PCBI.1011164}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/LuppiSSH24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/LvWL24, author = {Jinchao Lv and Jin Wang and Chunhe Li}, title = {Landscape quantifies the intermediate state and transition dynamics in ecological networks}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011766}, doi = {10.1371/JOURNAL.PCBI.1011766}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/LvWL24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/MancusoJLK24, author = {Christopher A. Mancuso and Kayla A. Johnson and Renming Liu and Arjun Krishnan}, title = {Joint representation of molecular networks from multiple species improves gene classification}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011773}, doi = {10.1371/JOURNAL.PCBI.1011773}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/MancusoJLK24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/ManjunathaBBSCCBSA24, author = {Karan Kabbur Hanumanthappa Manjunatha and Giorgia Baron and Danilo Benozzo and Erica Silvestri and Maurizio Corbetta and Alessandro Chiuso and Alessandra Bertoldo and Samir Suweis and Michele Allegra}, title = {Controlling target brain regions by optimal selection of input nodes}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011274}, doi = {10.1371/JOURNAL.PCBI.1011274}, timestamp = {Fri, 22 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/ManjunathaBBSCCBSA24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/ManningACDHC24, author = {Tyler S. Manning and Emma Alexander and Bruce G. Cumming and Gregory C. DeAngelis and Xin Huang and Emily A. Cooper}, title = {Transformations of sensory information in the brain suggest changing criteria for optimality}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011783}, doi = {10.1371/JOURNAL.PCBI.1011783}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/ManningACDHC24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/MonnierC24, author = {Lily Monnier and Paul{-}Henry Courn{\`{e}}de}, title = {A novel batch-effect correction method for scRNA-seq data based on Adversarial Information Factorization}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011880}, doi = {10.1371/JOURNAL.PCBI.1011880}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/MonnierC24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/MukherjeeCHBAEPB24, author = {Avik Mukherjee and Yu{-}Fang Chang and Yanqing Huang and Nina Catherine Benites and Leander Ammar and Jade Ealy and Mark Polk and Markus Basan}, title = {Plasticity of growth laws tunes resource allocation strategies in bacteria}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011735}, doi = {10.1371/JOURNAL.PCBI.1011735}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/MukherjeeCHBAEPB24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/OcanaTiendaLPJP24, author = {Beatriz Oca{\~{n}}a{-}Tienda and Odelaisy Le{\'{o}}n{-}Triana and Juli{\'{a}}n P{\'{e}}rez{-}Beteta and Juan Jim{\'{e}}nez{-}S{\'{a}}nchez and V{\'{\i}}ctor M. P{\'{e}}rez{-}Garc{\'{\i}}a}, title = {Radiation necrosis after radiation therapy treatment of brain metastases: {A} computational approach}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011400}, doi = {10.1371/JOURNAL.PCBI.1011400}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/OcanaTiendaLPJP24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/PalsMB24, author = {Matthijs Pals and Jakob H. Macke and Omri Barak}, title = {Trained recurrent neural networks develop phase-locked limit cycles in a working memory task}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011852}, doi = {10.1371/JOURNAL.PCBI.1011852}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/PalsMB24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/PandeyFCMDVCP24, author = {Aakash Pandey and Abigail B. Feuka and Melinda Cosgrove and Megan Moriarty and Anthony Duffiney and Kurt C. Vercauteren and Henry Campa III and Kim M. Pepin}, title = {Wildlife vaccination strategies for eliminating bovine tuberculosis in white-tailed deer populations}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011287}, doi = {10.1371/JOURNAL.PCBI.1011287}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/PandeyFCMDVCP24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/PapaleH24, author = {Andrea Papale and David Holcman}, title = {Chromatin phase separated nanoregions explored by polymer cross-linker models and reconstructed from single particle trajectories}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011794}, doi = {10.1371/JOURNAL.PCBI.1011794}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/PapaleH24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/PercivalOCH24, author = {Sarah Percival and Joyce G. Onyenedum and Daniel H. Chitwood and Aman Y. Husbands}, title = {Topological data analysis reveals core heteroblastic and ontogenetic programs embedded in leaves of grapevine (Vitaceae) and maracuy{\'{a}} (Passifloraceae)}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011845}, doi = {10.1371/JOURNAL.PCBI.1011845}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/PercivalOCH24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/PflugBP24, author = {Florian G. Pflug and Deepak Bhat and Simone Pigolotti}, title = {Genome replication in asynchronously growing microbial populations}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011753}, doi = {10.1371/JOURNAL.PCBI.1011753}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/PflugBP24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/PhillipsFBW24, author = {Aaron L. Phillips and Scott Ferguson and Rachel A. Burton and Nathan S. Watson{-}Haigh}, title = {{CLAW:} An automated Snakemake workflow for the assembly of chloroplast genomes from long-read data}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011870}, doi = {10.1371/JOURNAL.PCBI.1011870}, timestamp = {Mon, 01 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/PhillipsFBW24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/PinottiLGGHBTBPHF24, author = {Francesco Pinotti and Jos{\'{e}} Louren{\c{c}}o and Sunetra Gupta and Suman Das Gupta and Joerg Henning and Damer Blake and Fiona Tomley and Tony Barnett and Dirk Pfeiffer and Md. Ahasanul Hoque and Guillaume Fourni{\'{e}}}, title = {EPINEST, an agent-based model to simulate epidemic dynamics in large-scale poultry production and distribution networks}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011375}, doi = {10.1371/JOURNAL.PCBI.1011375}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/PinottiLGGHBTBPHF24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/PlankWM24, author = {Michael J. Plank and Leighton M. Watson and Oliver J. Maclaren}, title = {Near-term forecasting of Covid-19 cases and hospitalisations in Aotearoa New Zealand}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011752}, doi = {10.1371/JOURNAL.PCBI.1011752}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/PlankWM24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/QiuWLLAPZ24, author = {Sizhe Qiu and Xinlong Wan and Yueshan Liang and Cameron R. Lamoureux and Amir Akbari and Bernhard O. Palsson and Daniel C. Zielinski}, title = {Inferred regulons are consistent with regulator binding sequences in E. coli}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011824}, doi = {10.1371/JOURNAL.PCBI.1011824}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/QiuWLLAPZ24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/RamachandranLC24, author = {Anand Ramachandran and Steven S. Lumetta and Deming Chen}, title = {PandoGen: Generating complete instances of future SARS-CoV-2 sequences using Deep Learning}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011790}, doi = {10.1371/JOURNAL.PCBI.1011790}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/RamachandranLC24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/RobertsNPIVMRK24, author = {Jacob B. Roberts and Alberto A Nava and Allison N. Pearson and Matthew R. Incha and Luis E. Valencia and Melody Ma and Abhay Rao and Jay D. Keasling}, title = {Foldy: An open-source web application for interactive protein structure analysis}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011171}, doi = {10.1371/JOURNAL.PCBI.1011171}, timestamp = {Wed, 20 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/RobertsNPIVMRK24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/RoblesPVC24, author = {Javier Robles and Ananth Prakash and Juan Antonio Vizca{\'{\i}}no and J. Ignacio Casal}, title = {Integrated meta-analysis of colorectal cancer public proteomic datasets for biomarker discovery and validation}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011828}, doi = {10.1371/JOURNAL.PCBI.1011828}, timestamp = {Mon, 01 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/RoblesPVC24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/SamantaG24, author = {Rituparna Samanta and Jeffrey J. Gray}, title = {Implicit model to capture electrostatic features of membrane environment}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011296}, doi = {10.1371/JOURNAL.PCBI.1011296}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/SamantaG24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/SarabipourKQKABG24, author = {Sarvenaz Sarabipour and Karina Kinghorn and Kaitlyn M. Quigley and Anita Kovacs{-}Kasa and Brian H. Annex and Victoria L. Bautch and Feilim Mac Gabhann}, title = {Trafficking dynamics of VEGFR1, VEGFR2, and {NRP1} in human endothelial cells}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011798}, doi = {10.1371/JOURNAL.PCBI.1011798}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/SarabipourKQKABG24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/SchaefferZMKCG24, author = {R. Dustin Schaeffer and Jing Zhang and Kirill E. Medvedev and Lisa N. Kinch and Qian Cong and Nick V. Grishin}, title = {{ECOD} domain classification of 48 whole proteomes from AlphaFold Structure Database using {DPAM2}}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011586}, doi = {10.1371/JOURNAL.PCBI.1011586}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/SchaefferZMKCG24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/SchiefersteinSLK24, author = {Natalie Schieferstein and Tilo Schwalger and Benjamin Lindner and Richard Kempter}, title = {Intra-ripple frequency accommodation in an inhibitory network model for hippocampal ripple oscillations}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011886}, doi = {10.1371/JOURNAL.PCBI.1011886}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/SchiefersteinSLK24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/SchmidKRPNY24, author = {Laura Schmid and Thomas Klotz and Oliver R{\"{o}}hrle and Randall K. Powers and Francesco Negro and Utku S. Yavuz}, title = {Postinhibitory excitation in motoneurons can be facilitated by hyperpolarization-activated inward currents: {A} simulation study}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011487}, doi = {10.1371/JOURNAL.PCBI.1011487}, timestamp = {Mon, 01 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/SchmidKRPNY24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/SebastianEP24, author = {Enrique R. Sebastian and Julio Esparza and Liset M. De La Prida}, title = {Quantifying the distribution of feature values over data represented in arbitrary dimensional spaces}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011768}, doi = {10.1371/JOURNAL.PCBI.1011768}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/SebastianEP24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/SestaPFU24, author = {Luca Sesta and Andrea Pagnani and Jorge Fernandez{-}de{-}Coss{\'{\i}}o{-}Diaz and Guido Uguzzoni}, title = {Inference of annealed protein fitness landscapes with AnnealDCA}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011812}, doi = {10.1371/JOURNAL.PCBI.1011812}, timestamp = {Mon, 01 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/SestaPFU24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/ShinAC24, author = {Bryan Shin and Gary An and Chase Cockrell}, title = {Examining B-cell dynamics and responsiveness in different inflammatory milieus using an agent-based model}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011776}, doi = {10.1371/JOURNAL.PCBI.1011776}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/ShinAC24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/SmithBBCDLHLMMMMRRWWYZZC24, author = {Gabriel Reuben Smith and Carolina Bello and Lalasia Bialic{-}Murphy and Emily Clark and Camille S. Delavaux and Camille Fournier de Lauriere and Johan van den Hoogen and Thomas Lauber and Haozhi Ma and Daniel S. Maynard and Matthew Mirman and Lidong Mo and Dominic Rebindaine and Josephine Elena Reek and Leland K. Werden and Zhaofei Wu and Gayoung Yang and Qingzhou Zhao and Constantin M. Zohner and Thomas Ward Crowther}, title = {Ten simple rules for using large language models in science, version 1.0}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011767}, doi = {10.1371/JOURNAL.PCBI.1011767}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/SmithBBCDLHLMMMMRRWWYZZC24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/SoulosI24, author = {Paul Soulos and Leyla Isik}, title = {Disentangled deep generative models reveal coding principles of the human face processing network}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011887}, doi = {10.1371/JOURNAL.PCBI.1011887}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/SoulosI24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/SudoF24, author = {Maki Sudo and Koichi Fujimoto}, title = {Diffusive mediator feedbacks control the health-to-disease transition of skin inflammation}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011693}, doi = {10.1371/JOURNAL.PCBI.1011693}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/SudoF24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/SwetnamABBCCCCCCCDDDEEFFFGHJLLLM24, author = {Tyson L. Swetnam and Parker B. Antin and Ryan Bartelme and Alexander Bucksch and David Camhy and Greg Chism and Illyoung Choi and Amanda M. Cooksey and Michele Cosi and Cindy Cowen and Michael Culshaw{-}Maurer and Robert Davey and Sean Davey and Upendra Devisetty and Tony Edgin and Andy Edmonds and Dmitry V. Fedorov and Jeremy Frady and John Fonner and Jeffrey K. Gillan and Iqbal Hossain and Blake Joyce and Konrad Lang and Tina Lee and Shelley Littin and Ian McEwen and Nirav C. Merchant and David Micklos and Andrew Nelson and Ashley Ramsey and Sarah Roberts and Paul Sarando and Edwin Skidmore and Jawon Song and Mary Margaret Sprinkle and Sriram Srinivasan and Dan Stanzione and Jonathan D. Strootman and Sarah Stryeck and Reetu Tuteja and Matthew Vaughn and Mojib Wali and Mariah Wall and Ramona Walls and Liya Wang and Todd Wickizer and Jason Williams and John Wregglesworth and Eric Lyons}, title = {CyVerse: Cyberinfrastructure for open science}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011270}, doi = {10.1371/JOURNAL.PCBI.1011270}, timestamp = {Mon, 22 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/SwetnamABBCCCCCCCDDDEEFFFGHJLLLM24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/TerpstraMV24, author = {Sjoerd Terpstra and Flavia Maria Darcie Marquitti and V{\'{\i}}tor V. Vasconcelos}, title = {Adaptive foraging of pollinators fosters gradual tipping under resource competition and rapid environmental change}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011762}, doi = {10.1371/JOURNAL.PCBI.1011762}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/TerpstraMV24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/ThoretAGLP24, author = {Etienne Thoret and Thomas Andrillon and Caroline Gauriau and Damien L{\'{e}}ger and Daniel Pressnitzer}, title = {Sleep deprivation detected by voice analysis}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011849}, doi = {10.1371/JOURNAL.PCBI.1011849}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/ThoretAGLP24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/TolleyRGJ24, author = {Nicholas Tolley and Pedro L. C. Rodrigues and Alexandre Gramfort and Stephanie R. Jones}, title = {Methods and considerations for estimating parameters in biophysically detailed neural models with simulation based inference}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011108}, doi = {10.1371/JOURNAL.PCBI.1011108}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/TolleyRGJ24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/VlachouVUVOBDLR24, author = {Denise Vlachou and Maria Veretennikova and Laura Usselmann and Vadim Vasilyev and Sascha Ott and Georg A. Bjarnason and Robert Dallmann and Francis Levi and David A. Rand}, title = {TimeTeller: {A} tool to probe the circadian clock as a multigene dynamical system}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011779}, doi = {10.1371/JOURNAL.PCBI.1011779}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/VlachouVUVOBDLR24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/VoliotisAPVDT24, author = {Margaritis Voliotis and Ali Abbara and Julia K. Prague and Johannes D. Veldhuis and Waljit S. Dhillo and Krasimira Tsaneva{-}Atanasova}, title = {HormoneBayes: {A} novel Bayesian framework for the analysis of pulsatile hormone dynamics}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011928}, doi = {10.1371/JOURNAL.PCBI.1011928}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/VoliotisAPVDT24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/WangQH24, author = {Rui Wang and Zhilin Qu and Xiaodong Huang}, title = {Dissecting the roles of calcium cycling and its coupling with voltage in the genesis of early afterdepolarizations in cardiac myocyte models}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011930}, doi = {10.1371/JOURNAL.PCBI.1011930}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/WangQH24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/WientjesH24, author = {Sven Wientjes and Clay B. Holroyd}, title = {The successor representation subserves hierarchical abstraction for goal-directed behavior}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011312}, doi = {10.1371/JOURNAL.PCBI.1011312}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/WientjesH24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/WouweHDL24, author = {Tom Van Wouwe and Jennifer L. Hicks and Scott L. Delp and Karen C. Liu}, title = {A simulation framework to determine optimal strength training and musculoskeletal geometry for sprinting and distance running}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011410}, doi = {10.1371/JOURNAL.PCBI.1011410}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/WouweHDL24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/YeSTYSZWGL24, author = {Yongtao Ye and Marcus H. Shum and Joseph L. Tsui and Guangchuang Yu and David K. Smith and Huachen Zhu and Joseph T. Wu and Yi Guan and Tommy Tsan{-}Yuk Lam}, title = {Robust expansion of phylogeny for fast-growing genome sequence data}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011871}, doi = {10.1371/JOURNAL.PCBI.1011871}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/YeSTYSZWGL24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/ZeitlerAAWSG24, author = {Leo Zeitler and K{\'{e}}vin Andr{\'{e}} and Adriana Alberti and Cyril Denby Wilkes and Julie Soutourina and Arach Goldar}, title = {A genome-wide comprehensive analysis of nucleosome positioning in yeast}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011799}, doi = {10.1371/JOURNAL.PCBI.1011799}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/ZeitlerAAWSG24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/ZekeGD24, author = {Andr{\'{a}}s Zeke and Toby J. Gibson and Laszlo Dobson}, title = {Linear motifs regulating protein secretion, sorting and autophagy in Leishmania parasites are diverged with respect to their host equivalents}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011902}, doi = {10.1371/JOURNAL.PCBI.1011902}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/ZekeGD24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/ZhangGCKCGLRW24, author = {Chen Zhang and Junhui Gao and Hong{-}Yu Chen and Lingxin Kong and Guangshuo Cao and Xiangyu Guo and Wei Liu and Bin Ren and Dong{-}Qing Wei}, title = {{STGIC:} {A} graph and image convolution-based method for spatial transcriptomic clustering}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011935}, doi = {10.1371/JOURNAL.PCBI.1011935}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/ZhangGCKCGLRW24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/ZhaoCPY24, author = {Jiao Zhao and Ke Chen and Bernhard O. Palsson and Laurence Yang}, title = {StressME: Unified computing framework of Escherichia coli metabolism, gene expression, and stress responses}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011865}, doi = {10.1371/JOURNAL.PCBI.1011865}, timestamp = {Tue, 09 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/ZhaoCPY24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/ZhaoWGACDFP24, author = {Haiqing Zhao and Hao Wu and Alex Guseman and Dulith Abeykoon and Christina M. Camara and Yamini Dalal and David Fushman and Garegin A. Papoian}, title = {The role of cryptic ancestral symmetry in histone folding mechanisms across Eukarya and Archaea}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011721}, doi = {10.1371/JOURNAL.PCBI.1011721}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/ZhaoWGACDFP24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/ZhuYLLSLZD24, author = {Kemin Zhu and Ling Yin and Kang Liu and Junli Liu and Yepeng Shi and Xuan Li and Hongyang Zou and Huibin Du}, title = {Generating synthetic population for simulating the spatiotemporal dynamics of epidemics}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {2}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011810}, doi = {10.1371/JOURNAL.PCBI.1011810}, timestamp = {Tue, 02 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/ZhuYLLSLZD24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/ZouSCMAOLT24, author = {Jian Zou and Osama Shah and Yu{-}Chiao Chiu and Tianzhou Ma and Jennifer M. Atkinson and Steffi Oesterreich and Adrian V. Lee and George C. Tseng}, title = {Systems approach for congruence and selection of cancer models towards precision medicine}, journal = {PLoS Comput. Biol.}, volume = {20}, number = {1}, year = {2024}, url = {https://doi.org/10.1371/journal.pcbi.1011754}, doi = {10.1371/JOURNAL.PCBI.1011754}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/ZouSCMAOLT24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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