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@article{DBLP:journals/jcheminf/AbbasiSPSMSBROA22, author = {Maryam Abbasi and Beatriz P. Santos and Tiago C. Pereira and Raul Sofia and Nelson R. C. Monteiro and Carlos J. V. Sim{\~{o}}es and Rui M. M. Brito and Bernardete Ribeiro and Jos{\'{e}} Lu{\'{\i}}s Oliveira and Joel P. Arrais}, title = {Designing optimized drug candidates with Generative Adversarial Network}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {40}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00623-6}, doi = {10.1186/S13321-022-00623-6}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/AbbasiSPSMSBROA22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/AbbasiSPSMSBROA22a, author = {Maryam Abbasi and Beatriz P. Santos and Tiago C. Pereira and Raul Sofa and Nelson R. C. Monteiro and Carlos J. V. Sim{\~{o}}es and Rui M. M. Brito and Bernardete Ribeiro and Jos{\'{e}} Lu{\'{\i}}s Oliveira and Joel P. Arrais}, title = {Correction to: Designing optimized drug candidates with Generative Adversarial Network}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {53}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00631-6}, doi = {10.1186/S13321-022-00631-6}, timestamp = {Wed, 08 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/AbbasiSPSMSBROA22a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/AdasmeBAS22, author = {Melissa F. Adasme and Sarah Naomi Bolz and Ali Al{-}Fatlawi and Michael Schroeder}, title = {Decomposing compounds enables reconstruction of interaction fingerprints for structure-based drug screening}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {17}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00592-w}, doi = {10.1186/S13321-022-00592-W}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/AdasmeBAS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/AhnLK22, author = {Sangjin Ahn and Si Eun Lee and Mi{-}Hyun Kim}, title = {Random-forest model for drug-target interaction prediction via Kullbeck-Leibler divergence}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {67}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00644-1}, doi = {10.1186/S13321-022-00644-1}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/AhnLK22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/AhnLK22a, author = {Sangjin Ahn and Si Eun Lee and Mi{-}Hyun Kim}, title = {Correction : Random-forest model for drug-target interaction prediction via Kullback-Leibler divergence}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {76}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00653-0}, doi = {10.1186/S13321-022-00653-0}, timestamp = {Mon, 05 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/AhnLK22a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/AmmarCEW22, author = {Ammar Ammar and Rachel Cavill and Chris T. A. Evelo and Egon L. Willighagen}, title = {PSnpBind: a database of mutated binding site protein-ligand complexes constructed using a multithreaded virtual screening workflow}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {8}, year = {2022}, url = {https://doi.org/10.1186/s13321-021-00573-5}, doi = {10.1186/S13321-021-00573-5}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/AmmarCEW22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/ArshadiSFY22, author = {Arash Keshavarzi Arshadi and Milad Salem and Arash Firouzbakht and Jiann{-}Shiun Yuan}, title = {MolData, a molecular benchmark for disease and target based machine learning}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {10}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00590-y}, doi = {10.1186/S13321-022-00590-Y}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/ArshadiSFY22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/AshH22, author = {Jeremy R. Ash and Jacqueline M. Hughes{-}Oliver}, title = {Confidence bands and hypothesis tests for hit enrichment curves}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {50}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00629-0}, doi = {10.1186/S13321-022-00629-0}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/AshH22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/BajorathCDGGLMM22, author = {J{\"{u}}rgen Bajorath and Ana L. Ch{\'{a}}vez{-}Hern{\'{a}}ndez and Miquel Duran{-}Frigola and Eli Fern{\'{a}}ndez{-}de Gortari and Johann Gasteiger and Edgar L{\'{o}}pez{-}L{\'{o}}pez and Gerald M. Maggiora and Jos{\'{e}} L. Medina{-}Franco and Oscar M{\'{e}}ndez{-}Lucio and Jordi Mestres and Ram{\'{o}}n Alain Miranda{-}Quintana and Tudor I. Oprea and Fabien Plisson and Fernando D. Prieto{-}Mart{\'{\i}}nez and Raquel Rodr{\'{\i}}guez{-}P{\'{e}}rez and Paola Rond{\'{o}}n{-}Villarreal and Fernanda I. Sald{\'{\i}}var{-}Gonz{\'{a}}lez and Norberto S{\'{a}}nchez{-}Cruz and Marilia Valli}, title = {Chemoinformatics and artificial intelligence colloquium: progress and challenges in developing bioactive compounds}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {82}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00661-0}, doi = {10.1186/S13321-022-00661-0}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/BajorathCDGGLMM22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/BoldiniFKS22, author = {Davide Boldini and Lukas Friedrich and Daniel Kuhn and Stephan A. Sieber}, title = {Tuning gradient boosting for imbalanced bioassay modelling with custom loss functions}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {80}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00657-w}, doi = {10.1186/S13321-022-00657-W}, timestamp = {Wed, 23 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/BoldiniFKS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/BonanniPR22, author = {Davide Bonanni and Luca Pinzi and Giulio Rastelli}, title = {Development of machine learning classifiers to predict compound activity on prostate cancer cell lines}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {77}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00647-y}, doi = {10.1186/S13321-022-00647-Y}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/BonanniPR22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/BrammerBKHHS22, author = {Jan C. Brammer and Gerd Blanke and Claudia Kellner and Alexander Hoffmann and Sonja Herres{-}Pawlis and Ulrich Schatzschneider}, title = {{TUCAN:} {A} molecular identifier and descriptor applicable to the whole periodic table from hydrogen to oganesson}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {66}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00640-5}, doi = {10.1186/S13321-022-00640-5}, timestamp = {Wed, 05 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/BrammerBKHHS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/BrayDSBGD22, author = {Simon Bray and Tim Dudgeon and Rachael Skyner and Rolf Backofen and Bj{\"{o}}rn A. Gr{\"{u}}ning and Frank von Delft}, title = {Galaxy workflows for fragment-based virtual screening: a case study on the SARS-CoV-2 main protease}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {22}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00588-6}, doi = {10.1186/S13321-022-00588-6}, timestamp = {Mon, 13 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/BrayDSBGD22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/BrinkhausRZS22, author = {Henning Otto Brinkhaus and Kohulan Rajan and Achim Zielesny and Christoph Steinbeck}, title = {RanDepict: Random chemical structure depiction generator}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {31}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00609-4}, doi = {10.1186/S13321-022-00609-4}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/BrinkhausRZS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/BrinkhausZSR22, author = {Henning Otto Brinkhaus and Achim Zielesny and Christoph Steinbeck and Kohulan Rajan}, title = {{DECIMER} - hand-drawn molecule images dataset}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {36}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00620-9}, doi = {10.1186/S13321-022-00620-9}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/BrinkhausZSR22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/ChadiMA22, author = {Mohamed{-}Amine Chadi and Hajar Mousannif and Ahmed Aamouche}, title = {Conditional reduction of the loss value versus reinforcement learning for biassing a de-novo drug design generator}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {65}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00643-2}, doi = {10.1186/S13321-022-00643-2}, timestamp = {Sun, 12 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/ChadiMA22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/ChiesaK22, author = {Luca Chiesa and Esther Kellenberger}, title = {One class classification for the detection of {\(\beta\)}2 adrenergic receptor agonists using single-ligand dynamic interaction data}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {74}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00654-z}, doi = {10.1186/S13321-022-00654-Z}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/ChiesaK22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/ChoiZMBP22, author = {Jong Youl Choi and Pei Zhang and Kshitij Mehta and Andrew E. Blanchard and Massimiliano Lupo Pasini}, title = {Scalable training of graph convolutional neural networks for fast and accurate predictions of {HOMO-LUMO} gap in molecules}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {70}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00652-1}, doi = {10.1186/S13321-022-00652-1}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/ChoiZMBP22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/CoupryP22, author = {Damien E. Coupry and Peter Pog{\'{a}}ny}, title = {Application of deep metric learning to molecular graph similarity}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {11}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00595-7}, doi = {10.1186/S13321-022-00595-7}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/CoupryP22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/DolciamiVKMAA22, author = {Daniela Dolciami and Eloy D. Villasclaras{-}Fern{\'{a}}ndez and Christos C. Kannas and Mirco Meniconi and Bissan Al{-}Lazikani and Albert A. Antolin}, title = {canSAR chemistry registration and standardization pipeline}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {28}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00606-7}, doi = {10.1186/S13321-022-00606-7}, timestamp = {Mon, 13 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/DolciamiVKMAA22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/Ferro-CostasMF22, author = {David Ferro{-}Costas and Irea Mosquera{-}Lois and Antonio Fern{\'{a}}ndez{-}Ramos}, title = {Correction to: TorsiFlex: an automatic generator of torsional conformers. Application to the twenty proteinogenic amino acids}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {13}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00585-9}, doi = {10.1186/S13321-022-00585-9}, timestamp = {Fri, 01 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/Ferro-CostasMF22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/FuziMMHE22, author = {Barbara F{\"{u}}zi and Rahuman S. Malik{-}Sheriff and Emma J. Manners and Henning Hermjakob and Gerhard F. Ecker}, title = {{KNIME} workflow for retrieving causal drug and protein interactions, building networks, and performing topological enrichment analysis demonstrated by a {DILI} case study}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {37}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00615-6}, doi = {10.1186/S13321-022-00615-6}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/FuziMMHE22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/Garay-RuizB22, author = {Diego Garay{-}Ruiz and Carles Bo}, title = {Chemical reaction network knowledge graphs: the OntoRXN ontology}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {29}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00610-x}, doi = {10.1186/S13321-022-00610-X}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/Garay-RuizB22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/GarciaGBO22, author = {Constantino A. Garc{\'{\i}}a and Alberto Gil{-}de{-}la{-}Fuente and Coral Barbas and Abraham Otero}, title = {Probabilistic metabolite annotation using retention time prediction and meta-learned projections}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {33}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00613-8}, doi = {10.1186/S13321-022-00613-8}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/GarciaGBO22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/GrimbergTTGGPA22, author = {Hadar Grimberg and Vinay S. Tiwari and Benjamin Tam and Lihi Gur{-}Arie and Daniela Gingold and Lea Polachek and Barak Akabayov}, title = {Machine learning approaches to optimize small-molecule inhibitors for {RNA} targeting}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {4}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00583-x}, doi = {10.1186/S13321-022-00583-X}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/GrimbergTTGGPA22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/GustavoV22, author = {Michael Freitas Gustavo and Toon Verstraelen}, title = {GloMPO (Globally Managed Parallel Optimization): a tool for expensive, black-box optimizations, application to ReaxFF reparameterizations}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {7}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00581-z}, doi = {10.1186/S13321-022-00581-Z}, timestamp = {Tue, 15 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/GustavoV22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/He22, author = {Kedan He}, title = {Pharmacological affinity fingerprints derived from bioactivity data for the identification of designer drugs}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {35}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00607-6}, doi = {10.1186/S13321-022-00607-6}, timestamp = {Mon, 13 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/He22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/He22a, author = {Kedan He}, title = {Correction to: Pharmacological affinity fingerprints derived from bioactivity data for the identification of designer drugs}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {42}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00625-4}, doi = {10.1186/S13321-022-00625-4}, timestamp = {Thu, 25 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/He22a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/HeNTCPBE22, author = {Jiazhen He and Eva Nittinger and Christian Tyrchan and Werngard Czechtizky and Atanas Patronov and Esben Jannik Bjerrum and Ola Engkvist}, title = {Transformer-based molecular optimization beyond matched molecular pairs}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {18}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00599-3}, doi = {10.1186/S13321-022-00599-3}, timestamp = {Wed, 27 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/HeNTCPBE22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/HuangLWLLTL22, author = {Mengting Huang and Chaofeng Lou and Zengrui Wu and Weihua Li and Philip W. Lee and Yun Tang and Guixia Liu}, title = {In silico prediction of UGT-mediated metabolism in drug-like molecules via graph neural network}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {46}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00626-3}, doi = {10.1186/S13321-022-00626-3}, timestamp = {Tue, 27 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/HuangLWLLTL22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/HumerHMWHHHS22, author = {Christina Humer and Henry Heberle and Floriane Montanari and Thomas Wolf and Florian Huber and Ryan Henderson and Julian Heinrich and Marc Streit}, title = {ChemInformatics Model Explorer {(CIME):} exploratory analysis of chemical model explanations}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {21}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00600-z}, doi = {10.1186/S13321-022-00600-Z}, timestamp = {Thu, 02 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/HumerHMWHHHS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/IsamuraL22, author = {Bienfait Kabuyaya Isamura and Kevin A. Lobb}, title = {{AMADAR:} a python-based package for large scale prediction of Diels-Alder transition state geometries and {IRC} path analysis}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {39}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00618-3}, doi = {10.1186/S13321-022-00618-3}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/IsamuraL22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/KerstjensW22, author = {Alan Kerstjens and Hans De Winter}, title = {{LEADD:} Lamarckian evolutionary algorithm for de novo drug design}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {3}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00582-y}, doi = {10.1186/S13321-022-00582-Y}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/KerstjensW22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/KhondakerGKFN22, author = {Rubaiyat Mohammad Khondaker and Stephen Gow and Samantha Kanza and Jeremy G. Frey and Mahesan Niranjan}, title = {Robustness under parameter and problem domain alterations of Bayesian optimization methods for chemical reactions}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {59}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00641-4}, doi = {10.1186/S13321-022-00641-4}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/KhondakerGKFN22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/KimKKRA22, author = {Hwanhee Kim and Soohyun Ko and Byung Ju Kim and Sung Jin Ryu and Jaegyoon Ahn}, title = {Predicting chemical structure using reinforcement learning with a stack-augmented conditional variational autoencoder}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {83}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00666-9}, doi = {10.1186/S13321-022-00666-9}, timestamp = {Thu, 05 Jan 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/KimKKRA22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/KimN22, author = {Eunyoung Kim and Hojung Nam}, title = {DeSIDE-DDI: interpretable prediction of drug-drug interactions using drug-induced gene expressions}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {9}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00589-5}, doi = {10.1186/S13321-022-00589-5}, timestamp = {Fri, 01 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/KimN22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/KochnevD22, author = {Yuri Kochnev and Jacob D. Durrant}, title = {FPocketWeb: protein pocket hunting in a web browser}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {58}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00637-0}, doi = {10.1186/S13321-022-00637-0}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/KochnevD22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/KongZLYYZWQY22, author = {Yue Kong and Xiaoman Zhao and Ruizi Liu and Zhenwu Yang and Hongyan Yin and Bowen Zhao and Jinling Wang and Bingjie Qin and Aixia Yan}, title = {Integrating concept of pharmacophore with graph neural networks for chemical property prediction and interpretation}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {52}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00634-3}, doi = {10.1186/S13321-022-00634-3}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/KongZLYYZWQY22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/KumarA22, author = {Neeraj Kumar and Vishal Acharya}, title = {Machine intelligence-driven framework for optimized hit selection in virtual screening}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {48}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00630-7}, doi = {10.1186/S13321-022-00630-7}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/KumarA22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/KwonLCK22, author = {Youngchun Kwon and Dongseon Lee and Youn{-}Suk Choi and Seokho Kang}, title = {Uncertainty-aware prediction of chemical reaction yields with graph neural networks}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {2}, year = {2022}, url = {https://doi.org/10.1186/s13321-021-00579-z}, doi = {10.1186/S13321-021-00579-Z}, timestamp = {Tue, 27 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/KwonLCK22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/LaiSSS22, author = {Adelene Lai and Jonas Schaub and Christoph Steinbeck and Emma Schymanski}, title = {An algorithm to classify homologous series within compound datasets}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {85}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00663-y}, doi = {10.1186/S13321-022-00663-Y}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/LaiSSS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/LangevinVB22, author = {Maxime Langevin and Rodolphe Vuilleumier and Marc Bianciotto}, title = {Explaining and avoiding failure modes in goal-directed generation of small molecules}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {20}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00601-y}, doi = {10.1186/S13321-022-00601-Y}, timestamp = {Wed, 27 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/LangevinVB22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/LeeN22, author = {Ingoo Lee and Hojung Nam}, title = {Sequence-based prediction of protein binding regions and drug-target interactions}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {5}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00584-w}, doi = {10.1186/S13321-022-00584-W}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/LeeN22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/LinCCZWX22, author = {Shenggeng Lin and Weizhi Chen and Gengwang Chen and Songchi Zhou and Dong{-}Qing Wei and Yi Xiong}, title = {{MDDI-SCL:} predicting multi-type drug-drug interactions via supervised contrastive learning}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {81}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00659-8}, doi = {10.1186/S13321-022-00659-8}, timestamp = {Wed, 23 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/LinCCZWX22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/LinTC22, author = {Min Htoo Lin and Zhengkai Tu and Connor W. Coley}, title = {Improving the performance of models for one-step retrosynthesis through re-ranking}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {15}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00594-8}, doi = {10.1186/S13321-022-00594-8}, timestamp = {Fri, 01 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/LinTC22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/LiuHSKIRDCH22, author = {Chengyou Liu and Andrew M. Hogan and Hunter Sturm and Mohd Wasif Khan and Md. Mohaiminul Islam and A. S. M. Zisanur Rahman and Rebecca L. Davis and Silvia T. Cardona and Pingzhao Hu}, title = {Deep learning-driven prediction of drug mechanism of action from large-scale chemical-genetic interaction profiles}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {12}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00596-6}, doi = {10.1186/S13321-022-00596-6}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/LiuHSKIRDCH22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/LjonchevaSKD22, author = {Milka Ljoncheva and Tomaz Stepisnik and Tina Kosjek and Saso Dzeroski}, title = {Machine learning for identification of silylated derivatives from mass spectra}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {62}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00636-1}, doi = {10.1186/S13321-022-00636-1}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/LjonchevaSKD22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/LuLSYZZLCXW22, author = {Chong Lu and Shien Liu and Weihua Shi and Jun Yu and Zhou Zhou and Xiaoxiao Zhang and Xiaoli Lu and Faji Cai and Ning Xia and Yikai Wang}, title = {Systemic evolutionary chemical space exploration for drug discovery}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {19}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00598-4}, doi = {10.1186/S13321-022-00598-4}, timestamp = {Thu, 20 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/LuLSYZZLCXW22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/LukashinaKSVS22, author = {Nina Lukashina and Elena Kartysheva and Ola Spjuth and Elizaveta Virko and Aleksei Shpilman}, title = {SimVec: predicting polypharmacy side effects for new drugs}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {49}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00632-5}, doi = {10.1186/S13321-022-00632-5}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/LukashinaKSVS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/MargulisSLBBN22, author = {Eitan Margulis and Yuli Slavutsky and Tatjana Lang and Maik Behrens and Yuval Benjamini and Masha Y. Niv}, title = {BitterMatch: recommendation systems for matching molecules with bitter taste receptors}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {45}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00612-9}, doi = {10.1186/S13321-022-00612-9}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/MargulisSLBBN22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/McKayYS22, author = {Brendan D. McKay and Mehmet Aziz Yirik and Christoph Steinbeck}, title = {Surge: a fast open-source chemical graph generator}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {24}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00604-9}, doi = {10.1186/S13321-022-00604-9}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/McKayYS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/MullerFS22, author = {Stefan M{\"{u}}ller and Christoph Flamm and Peter F. Stadler}, title = {What makes a reaction network "chemical"?}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {63}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00621-8}, doi = {10.1186/S13321-022-00621-8}, timestamp = {Mon, 05 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/MullerFS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/MusazadeJH22, author = {Fidan Musazade and Narmin Jamalova and Jamaladdin Hasanov}, title = {Review of techniques and models used in optical chemical structure recognition in images and scanned documents}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {61}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00642-3}, doi = {10.1186/S13321-022-00642-3}, timestamp = {Wed, 05 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/MusazadeJH22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/NagaMME22, author = {Doha Naga and Wolfgang Muster and Eunice Musvasva and Gerhard F. Ecker}, title = {Off-targetP {ML:} an open source machine learning framework for off-target panel safety assessment of small molecules}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {27}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00603-w}, doi = {10.1186/S13321-022-00603-W}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/NagaMME22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/PlyerMPSV22, author = {Louis Plyer and Gilles Marcou and C{\'{e}}line Perves and Rachel Schurhammer and Alexandre Varnek}, title = {Implementation of a soft grading system for chemistry in a Moodle plugin}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {72}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00645-0}, doi = {10.1186/S13321-022-00645-0}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/PlyerMPSV22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/PretoCM22, author = {Ant{\'{o}}nio J. Preto and Paulo C. Correia and Irina S. Moreira}, title = {DrugTax: package for drug taxonomy identification and explainable feature extraction}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {73}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00649-w}, doi = {10.1186/S13321-022-00649-W}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/PretoCM22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/RijnACDEJLLMNPW22, author = {Jeaphianne P. M. van Rijn and Antreas Afantitis and Mustafa Culha and Maria Dusinska and Thomas E. Exner and Nina Jeliazkova and Eleonora Marta Longhin and Iseult Lynch and Georgia Melagraki and Penny Nymark and Anastasios G. Papadiamantis and David A. Winkler and Hulya Yilmaz and Egon L. Willighagen}, title = {European Registry of Materials: global, unique identifiers for (undisclosed) nanomaterials}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {57}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00614-7}, doi = {10.1186/S13321-022-00614-7}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/RijnACDEJLLMNPW22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/Sanchez-CruzS22, author = {Norberto S{\'{a}}nchez{-}Cruz and Emma Schymanski}, title = {Paths to Cheminformatics: Q{\&}A with Norberto S{\'{a}}nchez-Cruz and Emma Schymanski}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {51}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00628-1}, doi = {10.1186/S13321-022-00628-1}, timestamp = {Sat, 10 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/Sanchez-CruzS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/ScalfaniPF22, author = {Vincent F. Scalfani and Vishank D. Patel and Avery M. Fernandez}, title = {Visualizing chemical space networks with RDKit and NetworkX}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {87}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00664-x}, doi = {10.1186/S13321-022-00664-X}, timestamp = {Thu, 05 Jan 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/ScalfaniPF22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/SchaubZZS22, author = {Jonas Schaub and Julian Zander and Achim Zielesny and Christoph Steinbeck}, title = {Scaffold Generator: a Java library implementing molecular scaffold functionalities in the Chemistry Development Kit {(CDK)}}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {79}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00656-x}, doi = {10.1186/S13321-022-00656-X}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/SchaubZZS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/SmajicGE22, author = {Aljosa Smajic and Melanie Grandits and Gerhard F. Ecker}, title = {Using Jupyter Notebooks for re-training machine learning models}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {54}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00635-2}, doi = {10.1186/S13321-022-00635-2}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/SmajicGE22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/SreenivasanHSMK22, author = {Akshai P. Sreenivasan and Philip J. Harrison and Wesley Schaal and Damian J. Matuszewski and Kim Kultima and Ola Spjuth}, title = {Predicting protein network topology clusters from chemical structure using deep learning}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {47}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00622-7}, doi = {10.1186/S13321-022-00622-7}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/SreenivasanHSMK22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/SundinVXPBHPKE22, author = {Iiris Sundin and Alexey Voronov and Haoping Xiao and Kostas Papadopoulos and Esben Jannik Bjerrum and Markus Heinonen and Atanas Patronov and Samuel Kaski and Ola Engkvist}, title = {Human-in-the-loop assisted de novo molecular design}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {86}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00667-8}, doi = {10.1186/S13321-022-00667-8}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/SundinVXPBHPKE22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/TaoWZLH22, author = {Huanyu Tao and Qilong Wu and Xuejun Zhao and Peicong Lin and Sheng{-}You Huang}, title = {Efficient 3D conformer generation of cyclic peptides formed by a disulfide bond}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {26}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00605-8}, doi = {10.1186/S13321-022-00605-8}, timestamp = {Mon, 27 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/TaoWZLH22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/TarasovaRBFP22, author = {Olga A. Tarasova and Anastasia V. Rudik and Nadezhda Yu. Biziukova and Dmitry Filimonov and Vladimir Poroikov}, title = {Chemical named entity recognition in the texts of scientific publications using the na{\"{\i}}ve Bayes classifier approach}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {55}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00633-4}, doi = {10.1186/S13321-022-00633-4}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/TarasovaRBFP22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/TawfikR22, author = {Sherif Abdulkader Tawfik and Salvy P. Russo}, title = {Naturally-meaningful and efficient descriptors: machine learning of material properties based on robust one-shot ab initio descriptors}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {78}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00658-9}, doi = {10.1186/S13321-022-00658-9}, timestamp = {Wed, 23 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/TawfikR22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/TerlouwVM22, author = {Barbara R. Terlouw and Sophie P. J. M. Vromans and Marnix H. Medema}, title = {PIKAChU: a Python-based informatics kit for analysing chemical units}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {34}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00616-5}, doi = {10.1186/S13321-022-00616-5}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/TerlouwVM22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/TevosyanKKTABSN22, author = {Ani Tevosyan and Lusine Khondkaryan and Hrant Khachatrian and Gohar Tadevosyan and Lilit Apresyan and Nelly Babayan and Helga Stopper and Zaven Navoyan}, title = {Improving {VAE} based molecular representations for compound property prediction}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {69}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00648-x}, doi = {10.1186/S13321-022-00648-X}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/TevosyanKKTABSN22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/ThomasOBG22, author = {Morgan C. Thomas and Noel M. O'Boyle and Andreas Bender and Chris de Graaf}, title = {Augmented Hill-Climb increases reinforcement learning efficiency for language-based de novo molecule generation}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {68}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00646-z}, doi = {10.1186/S13321-022-00646-Z}, timestamp = {Fri, 01 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/ThomasOBG22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/TongWDTRCRXHJZL22, author = {Xiaochu Tong and Dingyan Wang and Xiaoyu Ding and Xiaoqin Tan and Qun Ren and Geng Chen and Yu Rong and Tingyang Xu and Junzhou Huang and Hualiang Jiang and Mingyue Zheng and Xutong Li}, title = {Blood-brain barrier penetration prediction enhanced by uncertainty estimation}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {44}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00619-2}, doi = {10.1186/S13321-022-00619-2}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/TongWDTRCRXHJZL22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/WalterALWG22, author = {Moritz Walter and Luke N. Allen and Antonio de la Vega de Le{\'{o}}n and Samuel J. Webb and Valerie J. Gillet}, title = {Analysis of the benefits of imputation models over traditional {QSAR} models for toxicity prediction}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {32}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00611-w}, doi = {10.1186/S13321-022-00611-W}, timestamp = {Mon, 13 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/WalterALWG22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/WangGLGWLTL22, author = {Yimeng Wang and Yaxin Gu and Chaofeng Lou and Yuning Gong and Zengrui Wu and Weihua Li and Yun Tang and Guixia Liu}, title = {A multitask GNN-based interpretable model for discovery of selective {JAK} inhibitors}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {16}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00593-9}, doi = {10.1186/S13321-022-00593-9}, timestamp = {Tue, 27 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/WangGLGWLTL22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/WangKELV22, author = {Yifan Wang and Jake Kalscheur and Elvis Ebikade and Qiang Li and Dionisios G. Vlachos}, title = {LigninGraphs: lignin structure determination with multiscale graph modeling}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {43}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00627-2}, doi = {10.1186/S13321-022-00627-2}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/WangKELV22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/WangWWKPLDLHH22, author = {Mingyang Wang and Jike Wang and Gaoqi Weng and Yu Kang and Peichen Pan and Dan Li and Yafeng Deng and Honglin Li and Chang{-}Yu Hsieh and Tingjun Hou}, title = {ReMODE: a deep learning-based web server for target-specific drug design}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {84}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00665-w}, doi = {10.1186/S13321-022-00665-W}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/WangWWKPLDLHH22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/WangWWZC22, author = {Junjie Wang and Naifeng Wen and Chunyu Wang and Lingling Zhao and Liang Cheng}, title = {{ELECTRA-DTA:} a new compound-protein binding affinity prediction model based on the contextualized sequence encoding}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {14}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00591-x}, doi = {10.1186/S13321-022-00591-X}, timestamp = {Sun, 19 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/WangWWZC22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/WangWXYLCLHC22, author = {Ning{-}Ning Wang and Xiang{-}Gui Wang and Guo{-}Li Xiong and Zi{-}Yi Yang and Ai{-}Ping Lu and Xiang Chen and Shao Liu and Tingjun Hou and Dong{-}Sheng Cao}, title = {Machine learning to predict metabolic drug interactions related to cytochrome {P450} isozymes}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {23}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00602-x}, doi = {10.1186/S13321-022-00602-X}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/WangWXYLCLHC22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/WangYDSZLZCPH22, author = {Gaoang Wang and Jiahui Yu and Hongyan Du and Chao Shen and Xujun Zhang and Yifei Liu and Yangyang Zhang and Dong{-}Sheng Cao and Peichen Pan and Tingjun Hou}, title = {{VGSC-DB:} an online database of voltage-gated sodium channels}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {75}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00655-y}, doi = {10.1186/S13321-022-00655-Y}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/WangYDSZLZCPH22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/WangYZYQZWBD22, author = {Xinqiao Wang and Chuansheng Yao and Yun Zhang and Jiahui Yu and Haoran Qiao and Chengyun Zhang and Yejian Wu and Renren Bai and Hongliang Duan}, title = {From theory to experiment: transformer-based generation enables rapid discovery of novel reactions}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {60}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00638-z}, doi = {10.1186/S13321-022-00638-Z}, timestamp = {Tue, 18 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/WangYZYQZWBD22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/WeiZPWJQZ22, author = {Min Wei and Xudong Zhang and Xiaolin Pan and Bo Wang and Changge Ji and Yifei Qi and John Z. H. Zhang}, title = {HobPre: accurate prediction of human oral bioavailability for small molecules}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {1}, year = {2022}, url = {https://doi.org/10.1186/s13321-021-00580-6}, doi = {10.1186/S13321-021-00580-6}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/WeiZPWJQZ22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/WenLZZFH22, author = {Naifeng Wen and Guanqun Liu and Jie Zhang and Rubo Zhang and Yating Fu and Xu Han}, title = {A fingerprints based molecular property prediction method using the {BERT} model}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {71}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00650-3}, doi = {10.1186/S13321-022-00650-3}, timestamp = {Wed, 23 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/WenLZZFH22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/Willett22, author = {Peter Willett}, title = {Commentary: the first twelve years of the Journal of chemoinformatics}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {38}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00617-4}, doi = {10.1186/S13321-022-00617-4}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/Willett22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/XuLYLL22, author = {Zhanpeng Xu and Jianhua Li and Zhaopeng Yang and Shiliang Li and Honglin Li}, title = {SwinOCSR: end-to-end optical chemical structure recognition using a Swin Transformer}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {41}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00624-5}, doi = {10.1186/S13321-022-00624-5}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/XuLYLL22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/YesiltepeGMR22, author = {Yasemin Yesiltepe and Niranjan Govind and Thomas O. Metz and Ryan S. Renslow}, title = {An initial investigation of accuracy required for the identification of small molecules in complex samples using quantum chemical calculated {NMR} chemical shifts}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {64}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00587-7}, doi = {10.1186/S13321-022-00587-7}, timestamp = {Tue, 18 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/YesiltepeGMR22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/YuDP22, author = {Miao Yu and Georgia Dolios and Lauren Petrick}, title = {Reproducible untargeted metabolomics workflow for exhaustive {MS2} data acquisition of {MS1} features}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {6}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00586-8}, doi = {10.1186/S13321-022-00586-8}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/YuDP22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/YuWWTHS22, author = {Yang Yu and Zhe Wang and Lingling Wang and Sheng Tian and Tingjun Hou and Huiyong Sun}, title = {Predicting the mutation effects of protein-ligand interactions via end-point binding free energy calculations: strategies and analyses}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {56}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00639-y}, doi = {10.1186/S13321-022-00639-Y}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/YuWWTHS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/ZdrazilG22, author = {Barbara Zdrazil and Rajarshi Guha}, title = {Diversifying cheminformatics}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {25}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00597-5}, doi = {10.1186/S13321-022-00597-5}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/ZdrazilG22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/ZhangDWSLDC22, author = {Liu{-}Xia Zhang and Jie Dong and Hui Wei and Shao{-}Hua Shi and Ai{-}Ping Lu and Gui{-}Ming Deng and Dong{-}Sheng Cao}, title = {{TCMSID:} a simplified integrated database for drug discovery from traditional chinese medicine}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {89}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00670-z}, doi = {10.1186/S13321-022-00670-Z}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/ZhangDWSLDC22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/ZhangRDSLLX22, author = {Ruihan Zhang and Shoupeng Ren and Qi Dai and Tianze Shen and Xiaoli Li and Jin Li and Weilie Xiao}, title = {InflamNat: web-based database and predictor of anti-inflammatory natural products}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {30}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00608-5}, doi = {10.1186/S13321-022-00608-5}, timestamp = {Sun, 25 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/ZhangRDSLLX22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/ZhengTH22, author = {Xiaofan Zheng and Yoichi Tomiura and Kenshi Hayashi}, title = {Investigation of the structure-odor relationship using a Transformer model}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {88}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00671-y}, doi = {10.1186/S13321-022-00671-Y}, timestamp = {Thu, 05 Jan 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/ZhengTH22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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