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@article{DBLP:journals/jcb/AguiarI12,
author = {Derek Aguiar and
Sorin Istrail},
title = {HapCompass: {A} Fast Cycle Basis Algorithm for Accurate Haplotype
Assembly of Sequence Data},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {577--590},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0084},
doi = {10.1089/CMB.2012.0084},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/AguiarI12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Amit12,
author = {Roee Amit},
title = {Anti-Cooperative and Cooperative Protein-Protein Interactions between
TetR Isoforms on Synthetic Enhancers},
journal = {J. Comput. Biol.},
volume = {19},
number = {2},
pages = {115--125},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0257},
doi = {10.1089/CMB.2011.0257},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Amit12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/AndersenHPR12,
author = {J{\o}rgen E. Andersen and
Fenix W. D. Huang and
Robert C. Penner and
Christian M. Reidys},
title = {Topology of {RNA-RNA} Interaction Structures},
journal = {J. Comput. Biol.},
volume = {19},
number = {7},
pages = {928--943},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0308},
doi = {10.1089/CMB.2011.0308},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/AndersenHPR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ArimaT12,
author = {Serena Arima and
Luca Tardella},
title = {Improved Harmonic Mean Estimator for Phylogenetic Model Evidence},
journal = {J. Comput. Biol.},
volume = {19},
number = {4},
pages = {418--438},
year = {2012},
url = {https://doi.org/10.1089/cmb.2010.0139},
doi = {10.1089/CMB.2010.0139},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ArimaT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/August12,
author = {Elias August},
title = {Using Noise for Model-Testing},
journal = {J. Comput. Biol.},
volume = {19},
number = {8},
pages = {968--977},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0134},
doi = {10.1089/CMB.2011.0134},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/August12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BankevichNAGDKLNPPPSVTAP12,
author = {Anton Bankevich and
Sergey Nurk and
Dmitry Antipov and
Alexey A. Gurevich and
Mikhail Dvorkin and
Alexander S. Kulikov and
Valery M. Lesin and
Sergey I. Nikolenko and
Son K. Pham and
Andrey D. Prjibelski and
Alex Pyshkin and
Alexander Sirotkin and
Nikolay Vyahhi and
Glenn Tesler and
Max A. Alekseyev and
Pavel A. Pevzner},
title = {SPAdes: {A} New Genome Assembly Algorithm and Its Applications to
Single-Cell Sequencing},
journal = {J. Comput. Biol.},
volume = {19},
number = {5},
pages = {455--477},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0021},
doi = {10.1089/CMB.2012.0021},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BankevichNAGDKLNPPPSVTAP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Bar-YaakovGI12,
author = {Nimrod Bar{-}Yaakov and
Zehava Grossman and
Nathan Intrator},
title = {Using Iterative Ridge Regression to Explore Associations Between Conditioned
Variables},
journal = {J. Comput. Biol.},
volume = {19},
number = {5},
pages = {504--518},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0028},
doi = {10.1089/CMB.2011.0028},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Bar-YaakovGI12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BayzidW12,
author = {Md. Shamsuzzoha Bayzid and
Tandy J. Warnow},
title = {Estimating Optimal Species Trees from Incomplete Gene Trees Under
Deep Coalescence},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {591--605},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0037},
doi = {10.1089/CMB.2012.0037},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BayzidW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BehrensNN12,
author = {Sarah Behrens and
Cyril Nicaud and
Pierre Nicod{\`{e}}me},
title = {An Automaton Approach for Waiting Times in {DNA} Evolution},
journal = {J. Comput. Biol.},
volume = {19},
number = {5},
pages = {550--562},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0218},
doi = {10.1089/CMB.2011.0218},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BehrensNN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BolouriR12,
author = {Hamid Bolouri and
Walter L. Ruzzo},
title = {Integration of 198 ChIP-seq Datasets Reveals Human \emph{cis}-Regulatory
Regions},
journal = {J. Comput. Biol.},
volume = {19},
number = {9},
pages = {989--997},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0100},
doi = {10.1089/CMB.2012.0100},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BolouriR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/CalifanoKS12,
author = {Andrea Califano and
Manolis Kellis and
Gustavo Stolovitzky},
title = {Preface: {RECOMB} Systems Biology, Regulatory Genomics, and {DREAM}
2011 Special Issue},
journal = {J. Comput. Biol.},
volume = {19},
number = {2},
pages = {101},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.010p},
doi = {10.1089/CMB.2012.010P},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/CalifanoKS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/CarnevaliBHNNPEBMKMBD12,
author = {Paolo Carnevali and
Jonathan Baccash and
Aaron L. Halpern and
Igor Nazarenko and
Geoffrey B. Nilsen and
Krishna P. Pant and
Jessica C. Ebert and
Anushka Brownley and
Matt Morenzoni and
Vitali Karpinchyk and
Bruce Martin and
Dennis G. Ballinger and
Radoje Drmanac},
title = {Computational Techniques for Human Genome Resequencing Using Mated
Gapped Reads},
journal = {J. Comput. Biol.},
volume = {19},
number = {3},
pages = {279--292},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0201},
doi = {10.1089/CMB.2011.0201},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/CarnevaliBHNNPEBMKMBD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/CeselliFR12,
author = {Alberto Ceselli and
Sandro Luciano Fornili and
Giovanni Righini},
title = {Algorithms for the Design of Maximum Hydropathic Complementarity Molecules},
journal = {J. Comput. Biol.},
volume = {19},
number = {3},
pages = {261--270},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0084},
doi = {10.1089/CMB.2011.0084},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/CeselliFR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ChangGT12,
author = {Young Hwan Chang and
Joe W. Gray and
Claire J. Tomlin},
title = {Optimization-based Inference for Temporally Evolving Networks with
Applications in Biology},
journal = {J. Comput. Biol.},
volume = {19},
number = {12},
pages = {1307--1323},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0190},
doi = {10.1089/CMB.2012.0190},
timestamp = {Thu, 26 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ChangGT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Chen12,
author = {Yen Hung Chen},
title = {The \emph{k} Partition-Distance Problem},
journal = {J. Comput. Biol.},
volume = {19},
number = {4},
pages = {404--417},
year = {2012},
url = {https://doi.org/10.1089/cmb.2010.0186},
doi = {10.1089/CMB.2010.0186},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Chen12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ChenMSZ12,
author = {Ting Chen and
Paul Marjoram and
Fengzhu Sun and
Xianghong Jasmine Zhou},
title = {Preface: Special Issue},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {575--576},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.6pre},
doi = {10.1089/CMB.2012.6PRE},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ChenMSZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ChuangYLY12,
author = {Li{-}Yeh Chuang and
Cheng{-}Huei Yang and
Jung{-}Chike Li and
Cheng{-}Hong Yang},
title = {A Hybrid {BPSO-CGA} Approach for Gene Selection and Classification
of Microarray Data},
journal = {J. Comput. Biol.},
volume = {19},
number = {1},
pages = {68--82},
year = {2012},
url = {https://doi.org/10.1089/cmb.2010.0064},
doi = {10.1089/CMB.2010.0064},
timestamp = {Thu, 15 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/ChuangYLY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/CohenC12,
author = {Eyal Cohen and
Benny Chor},
title = {Detecting Phylogenetic Signals in Eukaryotic Whole Genome Sequences},
journal = {J. Comput. Biol.},
volume = {19},
number = {8},
pages = {945--956},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0122},
doi = {10.1089/CMB.2012.0122},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/CohenC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/CosentinoSPMBA12,
author = {Carlo Cosentino and
Luca Salerno and
Antonio Passanti and
Alessio Merola and
Declan G. Bates and
Francesco Amato},
title = {Structural Bistability of the {GAL} Regulatory Network and Characterization
of its Domains of Attraction},
journal = {J. Comput. Biol.},
volume = {19},
number = {2},
pages = {148--162},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0251},
doi = {10.1089/CMB.2011.0251},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/CosentinoSPMBA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/CuiJS12,
author = {Yun Cui and
Jesper Jansson and
Wing{-}Kin Sung},
title = {Polynomial-Time Algorithms for Building a Consensus MUL-Tree},
journal = {J. Comput. Biol.},
volume = {19},
number = {9},
pages = {1073--1088},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0008},
doi = {10.1089/CMB.2012.0008},
timestamp = {Tue, 17 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/CuiJS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/CunialA12,
author = {Fabio Cunial and
Alberto Apostolico},
title = {Phylogeny Construction with Rigid Gapped Motifs},
journal = {J. Comput. Biol.},
volume = {19},
number = {7},
pages = {911--927},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0060},
doi = {10.1089/CMB.2012.0060},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/CunialA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/DanaT12,
author = {Alexandra Dana and
Tamir Tuller},
title = {Efficient Manipulations of Synonymous Mutations for Controlling Translation
Rate: An Analytical Approach},
journal = {J. Comput. Biol.},
volume = {19},
number = {2},
pages = {200--231},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0275},
doi = {10.1089/CMB.2011.0275},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/DanaT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/DavidLLSV12,
author = {Olivier David and
Catherine Lar{\'{e}}do and
Rapha{\"{e}}l Leblois and
Brigitte Schaeffer and
Nicolas Vergne},
title = {Coalescent-Based {DNA} Barcoding: Multilocus Analysis and Robustness},
journal = {J. Comput. Biol.},
volume = {19},
number = {3},
pages = {271--278},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0122},
doi = {10.1089/CMB.2011.0122},
timestamp = {Thu, 06 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/DavidLLSV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/DevillersS12,
author = {Hugo Devillers and
Sophie Schbath},
title = {Separating Significant Matches from Spurious Matches in {DNA} Sequences},
journal = {J. Comput. Biol.},
volume = {19},
number = {1},
pages = {1--12},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0070},
doi = {10.1089/CMB.2011.0070},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/DevillersS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/DixitSV12,
author = {Narendra M. Dixit and
Piyush Srivastava and
Nisheeth K. Vishnoi},
title = {A Finite Population Model of Molecular Evolution: Theory and Computation},
journal = {J. Comput. Biol.},
volume = {19},
number = {10},
pages = {1176--1202},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0064},
doi = {10.1089/CMB.2012.0064},
timestamp = {Thu, 21 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/DixitSV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/DostBLSBB12,
author = {Banu Dost and
Nuno Bandeira and
Xiangqian Li and
Zhouxin Shen and
Steve Briggs and
Vineet Bafna},
title = {Accurate Mass Spectrometry Based Protein Quantification via Shared
Peptides},
journal = {J. Comput. Biol.},
volume = {19},
number = {4},
pages = {337--348},
year = {2012},
url = {https://doi.org/10.1089/cmb.2009.0267},
doi = {10.1089/CMB.2009.0267},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/DostBLSBB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/EduatiCKSCCT12,
author = {Federica Eduati and
Barbara Di Camillo and
Michael Karbiener and
Marcel Scheideler and
Davide Cor{\`{a}} and
Michele Caselle and
Gianna Toffolo},
title = {Dynamic Modeling of miRNA-mediated Feed-Forward Loops},
journal = {J. Comput. Biol.},
volume = {19},
number = {2},
pages = {188--199},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0274},
doi = {10.1089/CMB.2011.0274},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/EduatiCKSCCT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/EhlerFM12,
author = {Martin Ehler and
Frank Filbir and
Hrushikesh Narhar Mhaskar},
title = {Locally Learning Biomedical Data Using Diffusion Frames},
journal = {J. Comput. Biol.},
volume = {19},
number = {11},
pages = {1251--1264},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0187},
doi = {10.1089/CMB.2012.0187},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/EhlerFM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/FalconnetB12,
author = {Mikael Falconnet and
Sarah Behrens},
title = {Accurate Estimations of Evolutionary Times in the Context of Strong
CpG Hypermutability},
journal = {J. Comput. Biol.},
volume = {19},
number = {5},
pages = {519--531},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0135},
doi = {10.1089/CMB.2011.0135},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/FalconnetB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/FanCS12,
author = {Jia{-}Hao Fan and
Jianer Chen and
Sing{-}Hoi Sze},
title = {Identifying Complexes from Protein Interaction Networks According
to Different Types of Neighborhood Density},
journal = {J. Comput. Biol.},
volume = {19},
number = {12},
pages = {1284--1294},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0195},
doi = {10.1089/CMB.2012.0195},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/FanCS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/FonsecaW12,
author = {Rasmus Fonseca and
Pawel Winter},
title = {Bounding Volumes for Proteins: {A} Comparative Study},
journal = {J. Comput. Biol.},
volume = {19},
number = {10},
pages = {1203--1213},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0104},
doi = {10.1089/CMB.2012.0104},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/FonsecaW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/FrazierA12,
author = {Zachary Frazier and
Frank Alber},
title = {A Computational Approach to Increase Time Scales in Brownian Dynamics-Based
Reaction-Diffusion Modeling},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {606--618},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0027},
doi = {10.1089/CMB.2012.0027},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/FrazierA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/GaoHJLH12,
author = {Qinghui Gao and
Christine Ho and
Yingmin Jia and
Jingyi Jessica Li and
Haiyan Huang},
title = {Biclustering of Linear Patterns In Gene Expression Data},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {619--631},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0032},
doi = {10.1089/CMB.2012.0032},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/GaoHJLH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/GniewekKG12,
author = {Pawel Gniewek and
Andrzej Kolinski and
Dominik Gront},
title = {Optimization of Profile-to-Profile Alignment Parameters for One-Dimensional
Threading},
journal = {J. Comput. Biol.},
volume = {19},
number = {7},
pages = {879--886},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0307},
doi = {10.1089/CMB.2011.0307},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/GniewekKG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/GoncalvesPRR12,
author = {Emanuel J. V. Gon{\c{c}}alves and
Rui Pereira and
Isabel Rocha and
Miguel Rocha},
title = {Optimization Approaches for the \emph{In Silico} Discovery of Optimal
Targets for Gene Over/Underexpression},
journal = {J. Comput. Biol.},
volume = {19},
number = {2},
pages = {102--114},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0265},
doi = {10.1089/CMB.2011.0265},
timestamp = {Wed, 12 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/GoncalvesPRR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/GonzalezGM12,
author = {Miguel Gonz{\'{a}}lez and
Cristina Guti{\'{e}}rrez and
Rodrigo Mart{\'{\i}}nez},
title = {Expectation-Maximization Algorithm for Determining Natural Selection
of Y-Linked Genes Through Two-Sex Branching Processes},
journal = {J. Comput. Biol.},
volume = {19},
number = {9},
pages = {1015--1026},
year = {2012},
url = {https://doi.org/10.1089/cmb.2010.0242},
doi = {10.1089/CMB.2010.0242},
timestamp = {Thu, 24 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/GonzalezGM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/GroverN12,
author = {Dhruv Grover and
Juan Nunez{-}Iglesias},
title = {Betamax: Towards Optimal Sampling Strategies for High-Throughput Screens},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {776--784},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0036},
doi = {10.1089/CMB.2012.0036},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/GroverN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/GuptaMSZ12,
author = {Arvind Gupta and
J{\'{a}}n Manuch and
Ladislav Stacho and
Xiaohong Zhao},
title = {Algorithm for Haplotype Inference via Galled-Tree Networks with Simple
Galls},
journal = {J. Comput. Biol.},
volume = {19},
number = {4},
pages = {439--454},
year = {2012},
url = {https://doi.org/10.1089/cmb.2010.0145},
doi = {10.1089/CMB.2010.0145},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/GuptaMSZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Hamada12,
author = {Michiaki Hamada},
title = {Direct Updating of an {RNA} Base-Pairing Probability Matrix with Marginal
Probability Constraints},
journal = {J. Comput. Biol.},
volume = {19},
number = {12},
pages = {1265--1276},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0215},
doi = {10.1089/CMB.2012.0215},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Hamada12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HamadaA12,
author = {Michiaki Hamada and
Kiyoshi Asai},
title = {A Classification of Bioinformatics Algorithms from the Viewpoint of
Maximizing Expected Accuracy {(MEA)}},
journal = {J. Comput. Biol.},
volume = {19},
number = {5},
pages = {532--549},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0197},
doi = {10.1089/CMB.2011.0197},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HamadaA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HanR12,
author = {Hillary S. W. Han and
Christian M. Reidys},
title = {The 5{\({'}\)}-3{\({'}\)} Distance of {RNA} Secondary Structures},
journal = {J. Comput. Biol.},
volume = {19},
number = {7},
pages = {867--878},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0301},
doi = {10.1089/CMB.2011.0301},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HanR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HanR12a,
author = {Hillary S. W. Han and
Christian M. Reidys},
title = {A Phase Transition in Energy-Filtered {RNA} Secondary Structures},
journal = {J. Comput. Biol.},
volume = {19},
number = {10},
pages = {1105--1119},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0151},
doi = {10.1089/CMB.2012.0151},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HanR12a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HeTZWG12,
author = {Yichao He and
Haiyan Tian and
Xinlu Zhang and
Zhiwei Wang and
Suogang Gao},
title = {Nonadaptive Algorithms for Threshold Group Testing with Inhibitors
and Error-Tolerance},
journal = {J. Comput. Biol.},
volume = {19},
number = {7},
pages = {903--910},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0229},
doi = {10.1089/CMB.2011.0229},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HeTZWG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HelmkampJR12,
author = {Laura J. Helmkamp and
Ethan M. Jewett and
Noah A. Rosenberg},
title = {Improvements to a Class of Distance Matrix Methods for Inferring Species
Trees from Gene Trees},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {632--649},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0042},
doi = {10.1089/CMB.2012.0042},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HelmkampJR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HossainAP12,
author = {Mahmud Shahriar Hossain and
Monika Akbar and
Nicholas F. Polys},
title = {Narratives in the Network: Interactive Methods for Mining Cell Signaling
Networks},
journal = {J. Comput. Biol.},
volume = {19},
number = {9},
pages = {1043--1059},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0244},
doi = {10.1089/CMB.2011.0244},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HossainAP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/IbrahimJCL12,
author = {Maysson Al{-}Haj Ibrahim and
Sabah A. Jassim and
Michael Anthony Cawthorne and
Kenneth Langlands},
title = {A Topology-Based Score for Pathway Enrichment},
journal = {J. Comput. Biol.},
volume = {19},
number = {5},
pages = {563--573},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0182},
doi = {10.1089/CMB.2011.0182},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/IbrahimJCL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/IhuegbuSB12,
author = {Nnamdi E. Ihuegbu and
Gary D. Stormo and
Jeremy Buhler},
title = {Fast, Sensitive Discovery of Conserved Genome-Wide Motifs},
journal = {J. Comput. Biol.},
volume = {19},
number = {2},
pages = {139--147},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0249},
doi = {10.1089/CMB.2011.0249},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/IhuegbuSB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/JewettR12,
author = {Ethan M. Jewett and
Noah A. Rosenberg},
title = {iGLASS: An Improvement to the {GLASS} Method for Estimating Species
Trees from Gene Trees},
journal = {J. Comput. Biol.},
volume = {19},
number = {3},
pages = {293--315},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0231},
doi = {10.1089/CMB.2011.0231},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/JewettR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/JoyceGB12,
author = {Paul Joyce and
Alan Genz and
Erkan Ozge Buzbas},
title = {Efficient Simulation and Likelihood Methods for Non-Neutral Multi-Allele
Models},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {650--661},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0033},
doi = {10.1089/CMB.2012.0033},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/JoyceGB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KarlebachS12,
author = {Guy Karlebach and
Ron Shamir},
title = {Constructing Logical Models of Gene Regulatory Networks by Integrating
Transcription Factor-DNA Interactions with Expression Data: An Entropy-Based
Approach},
journal = {J. Comput. Biol.},
volume = {19},
number = {1},
pages = {30--41},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0100},
doi = {10.1089/CMB.2011.0100},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/KarlebachS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KinsellaB12,
author = {Marcus Kinsella and
Vineet Bafna},
title = {Combinatorics of the Breakage-Fusion-Bridge Mechanism},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {662--678},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0020},
doi = {10.1089/CMB.2012.0020},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/KinsellaB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KirkpatrickRFJZK12,
author = {Bonnie Kirkpatrick and
Yakir Reshef and
Hilary K. Finucane and
Haitao Jiang and
Binhai Zhu and
Richard M. Karp},
title = {Comparing Pedigree Graphs},
journal = {J. Comput. Biol.},
volume = {19},
number = {9},
pages = {998--1014},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0254},
doi = {10.1089/CMB.2011.0254},
timestamp = {Fri, 22 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/KirkpatrickRFJZK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Lai12,
author = {Yinglei Lai},
title = {Change-Point Analysis of Paired Allele-Specific Copy Number Variation
Data},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {679--693},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0031},
doi = {10.1089/CMB.2012.0031},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Lai12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LaviDS12,
author = {Ofer Lavi and
Gideon Dror and
Ron Shamir},
title = {Network-Induced Classification Kernels for Gene Expression Profile
Analysis},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {694--709},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0065},
doi = {10.1089/CMB.2012.0065},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LaviDS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Li-Thiao-TeS12,
author = {S{\'{e}}bastien Li{-}Thiao{-}T{\'{e}} and
Benno Schwikowski},
title = {Feature Detection with Controlled Error Rates in {LC/MS} Images},
journal = {J. Comput. Biol.},
volume = {19},
number = {4},
pages = {349--364},
year = {2012},
url = {https://doi.org/10.1089/cmb.2009.0125},
doi = {10.1089/CMB.2009.0125},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Li-Thiao-TeS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LiDLZ12,
author = {Wenyuan Li and
Chao Dai and
Chun{-}Chi Liu and
Xianghong Jasmine Zhou},
title = {Algorithm to Identify Frequent Coupled Modules from Two-Layered Network
Series: Application to Study Transcription and Splicing Coupling},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {710--730},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0025},
doi = {10.1089/CMB.2012.0025},
timestamp = {Fri, 19 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/LiDLZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LuW12,
author = {I{-}Lin Lu and
Hsiuying Wang},
title = {Protein-specific Scoring Method for Ligand Discovery},
journal = {J. Comput. Biol.},
volume = {19},
number = {11},
pages = {1215--1226},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0188},
doi = {10.1089/CMB.2012.0188},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LuW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LuoZX12,
author = {Li Luo and
Yun Zhu and
Momiao Xiong},
title = {A Novel Genome-Information Content-Based Statistic for Genome-Wide
Association Analysis Designed for Next-Generation Sequencing Data},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {731--744},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0035},
doi = {10.1089/CMB.2012.0035},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LuoZX12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ManolopoulouE12,
author = {Ioanna Manolopoulou and
Brent C. Emerson},
title = {Phylogeographic Ancestral Inference Using the Coalescent Model on
Haplotype Trees},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {745--755},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0038},
doi = {10.1089/CMB.2012.0038},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ManolopoulouE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/McPeek12,
author = {Mary Sara McPeek},
title = {{BLUP} Genotype Imputation for Case-Control Association Testing with
Related Individuals and Missing Data},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {756--765},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0024},
doi = {10.1089/CMB.2012.0024},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/McPeek12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MoriTFTTA12,
author = {Tomoya Mori and
Takeyuki Tamura and
Daiji Fukagawa and
Atsuhiro Takasu and
Etsuji Tomita and
Tatsuya Akutsu},
title = {A Clique-Based Method Using Dynamic Programming for Computing Edit
Distance Between Unordered Trees},
journal = {J. Comput. Biol.},
volume = {19},
number = {10},
pages = {1089--1104},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0133},
doi = {10.1089/CMB.2012.0133},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/MoriTFTTA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MovagharLSGR12,
author = {Afshin Fayyaz Movaghar and
Guillaume Launay and
Sophie Schbath and
Jean{-}Fran{\c{c}}ois Gibrat and
Fran{\c{c}}ois Rodolphe},
title = {Statistical Significance of Threading Scores},
journal = {J. Comput. Biol.},
volume = {19},
number = {1},
pages = {13--29},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0236},
doi = {10.1089/CMB.2011.0236},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/MovagharLSGR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/NebelW12,
author = {Markus E. Nebel and
Frank Weinberg},
title = {Algebraic and Combinatorial Properties of Common {RNA} Pseudoknot
Classes with Applications},
journal = {J. Comput. Biol.},
volume = {19},
number = {10},
pages = {1134--1150},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0094},
doi = {10.1089/CMB.2011.0094},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/NebelW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/NiV12,
author = {Shengyu Ni and
Martin Vingron},
title = {{R2KS:} {A} Novel Measure for Comparing Gene Expression Based on Ranked
Gene Lists},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {766--775},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0026},
doi = {10.1089/CMB.2012.0026},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/NiV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/OnukiYYKS12,
author = {Ritsuko Onuki and
Ryo Yamada and
Rui Yamaguchi and
Minoru Kanehisa and
Tetsuo Shibuya},
title = {Population Model-Based Inter-Diplotype Similarity Measure for Accurate
Diplotype Clustering},
journal = {J. Comput. Biol.},
volume = {19},
number = {1},
pages = {55--67},
year = {2012},
url = {https://doi.org/10.1089/cmb.2010.0227},
doi = {10.1089/CMB.2010.0227},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/OnukiYYKS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/PeiS12,
author = {Baikang Pei and
Dong{-}Guk Shin},
title = {Reconstruction of Biological Networks by Incorporating Prior Knowledge
into Bayesian Network Models},
journal = {J. Comput. Biol.},
volume = {19},
number = {12},
pages = {1324--1334},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0194},
doi = {10.1089/CMB.2011.0194},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/PeiS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/RabieS12,
author = {Huwaida S. Rabie and
Ian W. Saunders},
title = {A Simulation Study to Assess a Variable Selection Method for Selecting
Single Nucleotide Polymorphisms Associated with Disease},
journal = {J. Comput. Biol.},
volume = {19},
number = {10},
pages = {1151--1161},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0105},
doi = {10.1089/CMB.2011.0105},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/RabieS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ReyesGMFTSC12,
author = {R. Reyes and
Daniel Gamermann and
Arnau Montagud and
David Fuente and
Juli{\'{a}}n Triana and
Javier F. Urchuegu{\'{\i}}a Sch{\"{o}}lzel and
Pedro Fern{\'{a}}ndez de C{\'{o}}rdoba},
title = {Automation on the Generation of Genome-Scale Metabolic Models},
journal = {J. Comput. Biol.},
volume = {19},
number = {12},
pages = {1295--1306},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0183},
doi = {10.1089/CMB.2012.0183},
timestamp = {Tue, 17 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/ReyesGMFTSC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/RitoDR12,
author = {Tiago Rito and
Charlotte M. Deane and
Gesine Reinert},
title = {The Importance of Age and High Degree, in Protein-Protein Interaction
Networks},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {785--795},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0054},
doi = {10.1089/CMB.2012.0054},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/RitoDR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/RoyCSS12,
author = {Rajat Shuvro Roy and
Kevin C. Chen and
Anirvan M. Sengupta and
Alexander Schliep},
title = {{SLIQ:} Simple Linear Inequalities for Efficient Contig Scaffolding},
journal = {J. Comput. Biol.},
volume = {19},
number = {10},
pages = {1162--1175},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0263},
doi = {10.1089/CMB.2011.0263},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/RoyCSS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SaffarianGMT12,
author = {Azadeh Saffarian and
Mathieu Giraud and
Antoine de Monte and
H{\'{e}}l{\`{e}}ne Touzet},
title = {{RNA} Locally Optimal Secondary Structures},
journal = {J. Comput. Biol.},
volume = {19},
number = {10},
pages = {1120--1133},
year = {2012},
url = {https://doi.org/10.1089/cmb.2010.0178},
doi = {10.1089/CMB.2010.0178},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SaffarianGMT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SakhanenkoG12,
author = {Nikita A. Sakhanenko and
David J. Galas},
title = {Probabilistic Logic Methods and Some Applications to Biology and Medicine},
journal = {J. Comput. Biol.},
volume = {19},
number = {3},
pages = {316--336},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0234},
doi = {10.1089/CMB.2011.0234},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/SakhanenkoG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SakoparnigKPBB12,
author = {Thomas Sakoparnig and
Tobias Kockmann and
Renato Paro and
Christian Beisel and
Niko Beerenwinkel},
title = {Binding Profiles of Chromatin-Modifying Proteins Are Predictive for
Transcriptional Activity and Promoter-Proximal Pausing},
journal = {J. Comput. Biol.},
volume = {19},
number = {2},
pages = {126--138},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0258},
doi = {10.1089/CMB.2011.0258},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SakoparnigKPBB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SarkarGSN12,
author = {Deepayan Sarkar and
Steve Goldstein and
David C. Schwartz and
Michael A. Newton},
title = {Statistical Significance of Optical Map Alignments},
journal = {J. Comput. Biol.},
volume = {19},
number = {5},
pages = {478--492},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0221},
doi = {10.1089/CMB.2011.0221},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/SarkarGSN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SchbathMZFLG12,
author = {Sophie Schbath and
V{\'{e}}ronique Martin and
Matthias Zytnicki and
Julien Fayolle and
Valentin Loux and
Jean{-}Fran{\c{c}}ois Gibrat},
title = {Mapping Reads on a Genomic Sequence: An Algorithmic Overview and a
Practical Comparative Analysis},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {796--813},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0022},
doi = {10.1089/CMB.2012.0022},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SchbathMZFLG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SchindlerF12,
author = {Christina Schindler and
Wolfgang B. Fischer},
title = {Sequence Alignment of Viral Channel Proteins with Cellular Ion Channels},
journal = {J. Comput. Biol.},
volume = {19},
number = {9},
pages = {1060--1072},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0297},
doi = {10.1089/CMB.2011.0297},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SchindlerF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ScornavaccaLA12,
author = {C{\'{e}}line Scornavacca and
Simone Linz and
Benjamin Albrecht},
title = {A First Step Toward Computing All Hybridization Networks For Two Rooted
Binary Phylogenetic Trees},
journal = {J. Comput. Biol.},
volume = {19},
number = {11},
pages = {1227--1242},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0192},
doi = {10.1089/CMB.2012.0192},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ScornavaccaLA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SilberbergGKRS12,
author = {Yael Silberberg and
Assaf Gottlieb and
Martin Kupiec and
Eytan Ruppin and
Roded Sharan},
title = {Large-Scale Elucidation of Drug Response Pathways in Humans},
journal = {J. Comput. Biol.},
volume = {19},
number = {2},
pages = {163--174},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0264},
doi = {10.1089/CMB.2011.0264},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SilberbergGKRS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SongZTW12,
author = {Kai Song and
Ze Zhang and
Tuopeng Tong and
Fang Wu},
title = {Classifier Assessment and Feature Selection for Recognizing Short
Coding Sequences of Human Genes},
journal = {J. Comput. Biol.},
volume = {19},
number = {3},
pages = {251--260},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0078},
doi = {10.1089/CMB.2011.0078},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SongZTW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SperrinJ12,
author = {Matthew Sperrin and
Thomas Jaki},
title = {Recovering Independent Associations in Genetics: {A} Comparison},
journal = {J. Comput. Biol.},
volume = {19},
number = {8},
pages = {978--987},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0141},
doi = {10.1089/CMB.2011.0141},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/SperrinJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/StojmirovicY12,
author = {Aleksandar Stojmirovic and
Yi{-}Kuo Yu},
title = {Information Flow in Interaction Networks {II:} Channels, Path Lengths,
and Potentials},
journal = {J. Comput. Biol.},
volume = {19},
number = {4},
pages = {379--403},
year = {2012},
url = {https://doi.org/10.1089/cmb.2010.0228},
doi = {10.1089/CMB.2010.0228},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/StojmirovicY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/TerashiST12,
author = {Genki Terashi and
Tetsuo Shibuya and
Mayuko Takeda{-}Shitaka},
title = {{LB3D:} {A} Protein Three-Dimensional Substructure Search Program
Based on the Lower Bound of a Root Mean Square Deviation Value},
journal = {J. Comput. Biol.},
volume = {19},
number = {5},
pages = {493--503},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0230},
doi = {10.1089/CMB.2011.0230},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/TerashiST12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ToyoizumiT12,
author = {Hiroshi Toyoizumi and
Hideo Tsubouchi},
title = {Estimating the Number of Double-Strand Breaks Formed During Meiosis
from Partial Observation},
journal = {J. Comput. Biol.},
volume = {19},
number = {12},
pages = {1277--1283},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0209},
doi = {10.1089/CMB.2012.0209},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/ToyoizumiT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/TvedebrinkEMM12,
author = {Torben Tvedebrink and
Poul Svante Eriksen and
Helle Smidt Mogensen and
Niels Morling},
title = {Identifying Contributors of {DNA} Mixtures by Means of Quantitative
Information of {STR} Typing},
journal = {J. Comput. Biol.},
volume = {19},
number = {7},
pages = {887--902},
year = {2012},
url = {https://doi.org/10.1089/cmb.2010.0055},
doi = {10.1089/CMB.2010.0055},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/TvedebrinkEMM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/VardiRS12,
author = {Liram Vardi and
Eytan Ruppin and
Roded Sharan},
title = {A Linearized Constraint-Based Approach for Modeling Signaling Networks},
journal = {J. Comput. Biol.},
volume = {19},
number = {2},
pages = {232--240},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0277},
doi = {10.1089/CMB.2011.0277},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/VardiRS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Veselsky12,
author = {M. Veselsky},
title = {Order of Precedence and Age of {Y-DNA} Haplotypes},
journal = {J. Comput. Biol.},
volume = {19},
number = {11},
pages = {1243--1250},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0193},
doi = {10.1089/CMB.2012.0193},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/Veselsky12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/WangLYC12,
author = {Yi Wang and
Henry C. M. Leung and
Siu{-}Ming Yiu and
Francis Y. L. Chin},
title = {MetaCluster 4.0: {A} Novel Binning Algorithm for {NGS} Reads and Huge
Number of Species},
journal = {J. Comput. Biol.},
volume = {19},
number = {2},
pages = {241--249},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0276},
doi = {10.1089/CMB.2011.0276},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/WangLYC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/WangYT12,
author = {Mingjie Wang and
Yuzhen Ye and
Haixu Tang},
title = {A \emph{de Bruijn} Graph Approach to the Quantification of Closely-Related
Genomes in a Microbial Community},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {814--825},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0058},
doi = {10.1089/CMB.2012.0058},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/WangYT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/WinterF12,
author = {Pawel Winter and
Rasmus Fonseca},
title = {Adjustable Chain Trees for Proteins},
journal = {J. Comput. Biol.},
volume = {19},
number = {1},
pages = {83--99},
year = {2012},
url = {https://doi.org/10.1089/cmb.2010.0320},
doi = {10.1089/CMB.2010.0320},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/WinterF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/WongY12,
author = {Thomas K. F. Wong and
Siu{-}Ming Yiu},
title = {Structural Alignment of {RNA} with Triple Helix Structure},
journal = {J. Comput. Biol.},
volume = {19},
number = {4},
pages = {365--378},
year = {2012},
url = {https://doi.org/10.1089/cmb.2010.0052},
doi = {10.1089/CMB.2010.0052},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/WongY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/WuLKNW12,
author = {Min Wu and
Xiaoli Li and
Chee Keong Kwoh and
See{-}Kiong Ng and
Limsoon Wong},
title = {Discovery of Protein Complexes with Core-Attachment Structures from
Tandem Affinity Purification {(TAP)} Data},
journal = {J. Comput. Biol.},
volume = {19},
number = {9},
pages = {1027--1042},
year = {2012},
url = {https://doi.org/10.1089/cmb.2010.0293},
doi = {10.1089/CMB.2010.0293},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/WuLKNW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/XuZ12,
author = {Jialin Xu and
Yu Zhang},
title = {A Generalized Linear Model for Peak Calling in ChIP-Seq Data},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {826--838},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0023},
doi = {10.1089/CMB.2012.0023},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/XuZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/YangDN12,
author = {Xinyi Yang and
Jennifer E. Dent and
Christine Nardini},
title = {An S-System Parameter Estimation Method {(SPEM)} for Biological Networks},
journal = {J. Comput. Biol.},
volume = {19},
number = {2},
pages = {175--187},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0269},
doi = {10.1089/CMB.2011.0269},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/YangDN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/YiTS12,
author = {Gangman Yi and
Michael R. Thon and
Sing{-}Hoi Sze},
title = {Supervised Protein Family Classification and New Family Construction},
journal = {J. Comput. Biol.},
volume = {19},
number = {8},
pages = {957--967},
year = {2012},
url = {https://doi.org/10.1089/cmb.2011.0044},
doi = {10.1089/CMB.2011.0044},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/YiTS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Yuan0ZHW12,
author = {Xiguo Yuan and
David J. Miller and
Junying Zhang and
David M. Herrington and
Yue Wang},
title = {An Overview of Population Genetic Data Simulation},
journal = {J. Comput. Biol.},
volume = {19},
number = {1},
pages = {42--54},
year = {2012},
url = {https://doi.org/10.1089/cmb.2010.0188},
doi = {10.1089/CMB.2010.0188},
timestamp = {Sun, 19 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/Yuan0ZHW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ZhaiRSWLS12,
author = {Zhiyuan Zhai and
Gesine Reinert and
Kai Song and
Michael S. Waterman and
Yihui Luan and
Fengzhu Sun},
title = {Normal and Compound Poisson Approximations for Pattern Occurrences
in {NGS} Reads},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {839--854},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0029},
doi = {10.1089/CMB.2012.0029},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ZhaiRSWLS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ZhangKC12,
author = {Jing Zhang and
C.{-}C. Jay Kuo and
Liang Chen},
title = {{VERSE:} {A} Varying Effect Regression for Splicing Elements Discovery},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {855--865},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0063},
doi = {10.1089/CMB.2012.0063},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/ZhangKC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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