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@article{DBLP:journals/jbcb/AbbasiM16, author = {Wajid Arshad Abbasi and Fayyaz ul Amir Afsar Minhas}, title = {Issues in performance evaluation for host-pathogen protein interaction prediction}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {3}, pages = {1650011:1--1650011:17}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500116}, doi = {10.1142/S0219720016500116}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/AbbasiM16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/AbidiFFK16, author = {Nada Abidi and Raimo Franke and Peter Findeisen and Frank Klawonn}, title = {Alignment of time-resolved data from high throughput experiments}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {6}, pages = {1650030:1--1650030:16}, year = {2016}, url = {https://doi.org/10.1142/S021972001650030X}, doi = {10.1142/S021972001650030X}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/AbidiFFK16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/Akbal-DelibasFP16, author = {Bahar Akbal{-}Delibas and Roshanak Farhoodi and Marc Pomplun and Nurit Haspel}, title = {Accurate refinement of docked protein complexes using evolutionary information and deep learning}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {3}, pages = {1642002:1--1642002:16}, year = {2016}, url = {https://doi.org/10.1142/S0219720016420026}, doi = {10.1142/S0219720016420026}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/Akbal-DelibasFP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/BehaegelCBCD16, author = {Jonathan Behaegel and Jean{-}Paul Comet and Gilles Bernot and Emilien Cornillon and Franck Delaunay}, title = {A hybrid model of cell cycle in mammals}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {1}, pages = {1640001:1--1640001:17}, year = {2016}, url = {https://doi.org/10.1142/S0219720016400011}, doi = {10.1142/S0219720016400011}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbcb/BehaegelCBCD16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/BieleckiL16, author = {Jakub Bielecki and Ewelina Lipiec}, title = {Basis set dependence using {DFT/B3LYP} calculations to model the Raman spectrum of thymine}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {1}, pages = {1650002:1--1650002:15}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500025}, doi = {10.1142/S0219720016500025}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/BieleckiL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/BiswasG16, author = {Ashis Kumer Biswas and Jean X. Gao}, title = {PR2S2Clust: Patched RNA-seq read segments' structure-oriented clustering}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {5}, pages = {1650027:1--1650027:25}, year = {2016}, url = {https://doi.org/10.1142/S021972001650027X}, doi = {10.1142/S021972001650027X}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/BiswasG16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/ByunH16, author = {Yanga Byun and Kyungsook Han}, title = {An efficient algorithm for planar drawing of {RNA} structures with pseudoknots of any type}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {3}, pages = {1650009:1--1650009:23}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500098}, doi = {10.1142/S0219720016500098}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/ByunH16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/CaoS16, author = {Chang{-}Chang Cao and Xiao Sun}, title = {Ehapp2: Estimate haplotype frequencies from pooled sequencing data with prior database information}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {4}, pages = {1650017:1--1650017:15}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500177}, doi = {10.1142/S0219720016500177}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/CaoS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/Cerqueda-Garcia16, author = {Daniel Cerqueda{-}Garc{\'{\i}}a and Luisa I. Falc{\'{o}}n}, title = {Metabolic potential of microbial mats and microbialites: Autotrophic capabilities described by an \emph{in silico} stoichiometric approach from shared genomic resources}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {4}, pages = {1650020:1--1650020:15}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500207}, doi = {10.1142/S0219720016500207}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/Cerqueda-Garcia16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/ChatterjeeP16, author = {Prantik Chatterjee and Nikhil Ranjan Pal}, title = {Discovery of synergistic genetic network: {A} minimum spanning tree-based approach}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {1}, pages = {1650003:1--1650003:19}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500037}, doi = {10.1142/S0219720016500037}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/ChatterjeeP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/ChenPPHHZGJ16, author = {Jiao Chen and Tianhong Pan and Tianqing Pu and Biao Huang and Dorothy Yu Huang and Weiping Zhang and Stephan Gabos and Can Jin}, title = {Predicting {GHS} toxicity using {RTCA} and discrete-time Fourier transform}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {1}, pages = {1650004:1--1650004:20}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500049}, doi = {10.1142/S0219720016500049}, timestamp = {Fri, 28 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbcb/ChenPPHHZGJ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/ChoiSMS16, author = {Kiri Choi and Lucian P. Smith and J. Kyle Medley and Herbert M. Sauro}, title = {phraSED-ML: {A} paraphrased, human-readable adaptation of {SED-ML}}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {6}, pages = {1650035:1--1650035:11}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500359}, doi = {10.1142/S0219720016500359}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/ChoiSMS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/ChowdhuryRK16, author = {Archana Chowdhury and Pratyusha Rakshit and Amit Konar}, title = {Prediction of protein-protein interaction network using a multi-objective optimization approach}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {3}, pages = {1650008:1--1650008:34}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500086}, doi = {10.1142/S0219720016500086}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/ChowdhuryRK16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/DeJesusI16, author = {Michael A. DeJesus and Thomas R. Ioerger}, title = {Normalization of transposon-mutant library sequencing datasets to improve identification of conditionally essential genes}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {3}, pages = {1642004:1--1642004:20}, year = {2016}, url = {https://doi.org/10.1142/S021972001642004X}, doi = {10.1142/S021972001642004X}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/DeJesusI16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/DengKLHZ16, author = {Beichuan Deng and Seongho Kim and Hengguang Li and Elisabeth Heath and Xiang Zhang}, title = {Global peak alignment for comprehensive two-dimensional gas chromatography mass spectrometry using point matching algorithms}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {6}, pages = {1650032:1--1650032:18}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500323}, doi = {10.1142/S0219720016500323}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/DengKLHZ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/EmbarHG16, author = {Varsha Embar and Adam Handen and Madhavi K. Ganapathiraju}, title = {Is the average shortest path length of gene set a reflection of their biological relatedness?}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {6}, pages = {1660002:1--1660002:8}, year = {2016}, url = {https://doi.org/10.1142/S0219720016600027}, doi = {10.1142/S0219720016600027}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/EmbarHG16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/EngchuanMTDC16, author = {Worrawat Engchuan and Asawin Meechai and Sissades Tongsima and Narumol Doungpan and Jonathan H. Chan}, title = {Gene-set activity toolbox {(GAT):} {A} platform for microarray-based cancer diagnosis using an integrative gene-set analysis approach}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {4}, pages = {1650015:1--1650015:22}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500153}, doi = {10.1142/S0219720016500153}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbcb/EngchuanMTDC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/ErshovaRVSK16, author = {Anna S. Ershova and Ivan Rusinov and Mikhail O. Vasiliev and Sergei A. Spirin and Anna S. Karyagina}, title = {Restriction-Modification systems interplay causes avoidance of {GATC} site in prokaryotic genomes}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {2}, pages = {1641003:1--1641003:19}, year = {2016}, url = {https://doi.org/10.1142/S0219720016410031}, doi = {10.1142/S0219720016410031}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/ErshovaRVSK16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/FerneyhoughTDH16, author = {Gareth B. Ferneyhough and Corey M. Thibeault and Sergiu M. Dascalu and Frederick C. Harris Jr.}, title = {ModFossa: {A} library for modeling ion channels using Python}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {3}, pages = {1642003:1--1642003:16}, year = {2016}, url = {https://doi.org/10.1142/S0219720016420038}, doi = {10.1142/S0219720016420038}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbcb/FerneyhoughTDH16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/Gelfand16, author = {Mikhail S. Gelfand}, title = {Introduction to selected papers from {MCCMB} 2015}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {2}, pages = {1602003:1--1602003:2}, year = {2016}, url = {https://doi.org/10.1142/S0219720016020030}, doi = {10.1142/S0219720016020030}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/Gelfand16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/GerstgrasserNSS16, author = {Matthias Gerstgrasser and Sarah Nicholls and Michael Stout and Katherine Smart and Chris Powell and Theodore Kypraios and Dov J. Stekel}, title = {A Bayesian approach to analyzing phenotype microarray data enables estimation of microbial growth parameters}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {3}, pages = {1650007:1--1650007:23}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500074}, doi = {10.1142/S0219720016500074}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/GerstgrasserNSS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/GimWP16, author = {Jungsoo Gim and Sungho Won and Taesung Park}, title = {Conditional estimation of local pooled dispersion parameter in small-sample RNA-Seq data improves differential expression test}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {5}, pages = {1644006:1--1644006:13}, year = {2016}, url = {https://doi.org/10.1142/S0219720016440066}, doi = {10.1142/S0219720016440066}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/GimWP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/GohW16, author = {Wilson Wen Bin Goh and Limsoon Wong}, title = {Spectra-first feature analysis in clinical proteomics - {A} case study in renal cancer}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {5}, pages = {1644004:1--1644004:18}, year = {2016}, url = {https://doi.org/10.1142/S0219720016440042}, doi = {10.1142/S0219720016440042}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/GohW16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/GohW16a, author = {Wilson Wen Bin Goh and Limsoon Wong}, title = {Evaluating feature-selection stability in next-generation proteomics}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {5}, pages = {1650029:1--1650029:23}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500293}, doi = {10.1142/S0219720016500293}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/GohW16a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/GonzalezMM16, author = {Javier Gonz{\'{a}}lez and Alberto Mu{\~{n}}oz and Gabriel Martos}, title = {Asymmetric latent semantic indexing for gene expression experiments visualization}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {4}, pages = {1650023:1--1650023:18}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500232}, doi = {10.1142/S0219720016500232}, timestamp = {Mon, 29 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/GonzalezMM16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/GuXSWHZ16, author = {Li Gu and Lichun Xue and Qi Song and Fengji Wang and Huaqin He and Zhongyi Zhang}, title = {Classification of the fragrant styles and evaluation of the aromatic quality of flue-cured tobacco leaves by machine-learning methods}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {6}, pages = {1650033:1--1650033:18}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500335}, doi = {10.1142/S0219720016500335}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbcb/GuXSWHZ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/HeHXPL16, author = {Deyong He and Ling Huang and Yaping Xu and Xiaoliang Pan and Lijun Liu}, title = {Computational analysis and enzyme assay of inhibitor response to disease single nucleotide polymorphisms (SNPs) in lipoprotein lipase}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {5}, pages = {1650028:1--1650028:15}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500281}, doi = {10.1142/S0219720016500281}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/HeHXPL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/HuS16, author = {Ruifeng Hu and Xiaobo Sun}, title = {lncRNATargets: {A} platform for lncRNA target prediction based on nucleic acid thermodynamics}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {4}, pages = {1650016:1--1650016:10}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500165}, doi = {10.1142/S0219720016500165}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/HuS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/JiangCHZL16, author = {Ludi Jiang and Jiahua Chen and Yusu He and Yanling Zhang and Gongyu Li}, title = {A method to predict different mechanisms for blood-brain barrier permeability of {CNS} activity compounds in Chinese herbs using support vector machine}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {1}, pages = {1650005:1--1650005:14}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500050}, doi = {10.1142/S0219720016500050}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/JiangCHZL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/KalininaSSG16, author = {Anastasia S. Kalinina and Alexandra L. Suvorikova and Vladimir G. Spokoiny and Mikhail S. Gelfand}, title = {Detection of homologous recombination in closely related strains}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {2}, pages = {1641001:1--1641001:12}, year = {2016}, url = {https://doi.org/10.1142/S0219720016410018}, doi = {10.1142/S0219720016410018}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/KalininaSSG16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/KhrameevaFGM16, author = {Ekaterina Khrameeva and Geoffrey Fudenberg and Mikhail S. Gelfand and Leonid A. Mirny}, title = {History of chromosome rearrangements reflects the spatial organization of yeast chromosomes}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {2}, pages = {1641002:1--1641002:12}, year = {2016}, url = {https://doi.org/10.1142/S021972001641002X}, doi = {10.1142/S021972001641002X}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/KhrameevaFGM16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/KittichotiratEV16, author = {Weerayuth Kittichotirat and Worrawat Engchuan and Wanwipa Vongsangnak and Asawin Meechai}, title = {Preface to selected papers from the 6th International Conference on Computational Systems-Biology and Bioinformatics (CSBio2015)}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {1}, pages = {1602001:1--1602001:2}, year = {2016}, url = {https://doi.org/10.1142/S0219720016020017}, doi = {10.1142/S0219720016020017}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbcb/KittichotiratEV16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/KodamaS16, author = {Kento Kodama and Hiroto Saigo}, title = {{KDSNP:} {A} kernel-based approach to detecting high-order {SNP} interactions}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {5}, pages = {1644003:1--1644003:16}, year = {2016}, url = {https://doi.org/10.1142/S0219720016440030}, doi = {10.1142/S0219720016440030}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/KodamaS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/KonharDMBT16, author = {Ruchishree Konhar and Manish Debnath and Jean Valrie Marbaniang and Devendra Kumar Biswal and Pramod Tandon}, title = {Age estimation for the genus \emph{Cymbidium} (Orchidaceae: Epidendroideae) with implementation of fossil data calibration using molecular markers {(ITS2} {\&} matK) and phylogeographic inference from ancestral area reconstruction}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {6}, pages = {1660001:1--1660001:17}, year = {2016}, url = {https://doi.org/10.1142/S0219720016600015}, doi = {10.1142/S0219720016600015}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/KonharDMBT16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/LiXWLFCWCL16, author = {Jin Li and Chengzhen Xu and Lei Wang and Hong Liang and Weixing Feng and Zhongxi Cai and Ying Wang and Wang Cong and Yunlong Liu}, title = {PSRna: Prediction of small {RNA} secondary structures based on reverse complementary folding method}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {4}, pages = {1643001:1--1643001:18}, year = {2016}, url = {https://doi.org/10.1142/S0219720016430010}, doi = {10.1142/S0219720016430010}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/LiXWLFCWCL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/LuL16, author = {Bingxin Lu and Hon Wai Leong}, title = {{GI-SVM:} {A} sensitive method for predicting genomic islands based on unannotated sequence of a single genome}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {1}, pages = {1640003:1--1640003:16}, year = {2016}, url = {https://doi.org/10.1142/S0219720016400035}, doi = {10.1142/S0219720016400035}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/LuL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/MahiB16, author = {Naim Al Mahi and Munni Begum}, title = {A two-step integrated approach to detect differentially expressed genes in RNA-Seq data}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {6}, pages = {1650034:1--1650034:18}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500347}, doi = {10.1142/S0219720016500347}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/MahiB16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/MandalKSP16, author = {Sudip Mandal and Abhinandan Khan and Goutam Saha and Rajat Kumar Pal}, title = {Reverse engineering of gene regulatory networks based on S-systems and Bat algorithm}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {3}, pages = {1650010:1--1650010:22}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500104}, doi = {10.1142/S0219720016500104}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/MandalKSP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/MapiyeCG16, author = {Darlington S. Mapiye and Alan Christoffels and Junaid Gamieldien}, title = {Identification of phenotype-relevant differentially expressed genes in breast cancer demonstrates enhanced quantile discretization protocol's utility in multi-platform microarray data integration}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {5}, pages = {1650022:1--1650022:18}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500220}, doi = {10.1142/S0219720016500220}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/MapiyeCG16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/MehraeiBT16, author = {Mani Mehraei and Rza Bashirov and S{\"{u}}kr{\"{u}} T{\"{u}}zmen}, title = {Target-based drug discovery for {\(\beta\)}-globin disorders: drug target prediction using quantitative modeling with hybrid functional Petri nets}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {5}, pages = {1650026:1--1650026:18}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500268}, doi = {10.1142/S0219720016500268}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/MehraeiBT16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/MoonLE16, author = {Jucheol Moon and Harris T. Lin and Oliver Eulenstein}, title = {Consensus properties and their large-scale applications for the gene duplication problem}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {3}, pages = {1642005:1--1642005:17}, year = {2016}, url = {https://doi.org/10.1142/S0219720016420051}, doi = {10.1142/S0219720016420051}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/MoonLE16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/OchsPHGL16, author = {Christopher Ochs and Yehoshua Perl and Michael Halper and James Geller and Jane Lomax}, title = {Quality assurance of the gene ontology using abstraction networks}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {3}, pages = {1642001:1--1642001:22}, year = {2016}, url = {https://doi.org/10.1142/S0219720016420014}, doi = {10.1142/S0219720016420014}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbcb/OchsPHGL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/OhHLP16, author = {Sohee Oh and Ik{-}Soo Huh and Seung Yeoun Lee and Taesung Park}, title = {Analysis of multiple related phenotypes in genome-wide association studies}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {5}, pages = {1644005:1--1644005:23}, year = {2016}, url = {https://doi.org/10.1142/S0219720016440054}, doi = {10.1142/S0219720016440054}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/OhHLP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/ParkHRLKKHK16, author = {Jinwoo Park and Benjamin Hur and SungMin Rhee and Sangsoo Lim and Min{-}Su Kim and Kwangsoo Kim and Wonshik Han and Sun Kim}, title = {Information theoretic sub-network mining characterizes breast cancer subtypes in terms of cancer core mechanisms}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {5}, pages = {1644002:1--1644002:23}, year = {2016}, url = {https://doi.org/10.1142/S0219720016440029}, doi = {10.1142/S0219720016440029}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbcb/ParkHRLKKHK16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/PavelV16, author = {Ana Br{\^{a}}ndusa Pavel and Cristian Ioan Vasile}, title = {Identifying cancer type specific oncogenes and tumor suppressors using limited size data}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {6}, pages = {1650031:1--1650031:16}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500311}, doi = {10.1142/S0219720016500311}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/PavelV16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/Perualila-TanST16, author = {Nolen Joy Perualila{-}Tan and Ziv Shkedy and Willem Talloen and Hinrich W. H. G{\"{o}}hlmann and Marijke Van Moerbeke and Adetayo Kasim}, title = {Weighted similarity-based clustering of chemical structures and bioactivity data in early drug discovery}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {4}, pages = {1650018:1--1650018:22}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500189}, doi = {10.1142/S0219720016500189}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/Perualila-TanST16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/PetrovAMK16, author = {Artem Petrov and Vladimir Arzhanik and Gennady Makarov and Oleg V. Koliasnikov}, title = {A novel Arg H52/Tyr {H33} conservative motif in antibodies: {A} correlation between sequence of antibodies and antigen binding}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {4}, pages = {1650019:1--1650019:17}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500190}, doi = {10.1142/S0219720016500190}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/PetrovAMK16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/PianZCCLLZ16, author = {Cong Pian and Jin Zhang and Yuan{-}yuan Chen and Zhi Chen and Qin Li and Qiang Li and Liang{-}Yun Zhang}, title = {OP-Triplet-ELM: Identification of real and pseudo microRNA precursors using extreme learning machine with optimal features}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {1}, pages = {1650006:1--1650006:14}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500062}, doi = {10.1142/S0219720016500062}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/PianZCCLLZ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/Precharattana16, author = {Monamorn Precharattana}, title = {Stochastic modeling for dynamics of {HIV-1} infection using cellular automata: {A} review}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {1}, pages = {1630001:1--1630001:17}, year = {2016}, url = {https://doi.org/10.1142/S021972001630001X}, doi = {10.1142/S021972001630001X}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/Precharattana16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/SaeedHA16, author = {Fahad Saeed and Nurit Haspel and Hisham Al{-}Mubaid}, title = {Introduction to the selected papers from the 7th International Conference on Bioinformatics and Computational Biology (BICoB 2015)}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {3}, pages = {1602002:1--1602002:3}, year = {2016}, url = {https://doi.org/10.1142/S0219720016020029}, doi = {10.1142/S0219720016020029}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/SaeedHA16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/SardarazTI16, author = {Muhammad Sardaraz and Muhammad Tahir and Ataul Aziz Ikram}, title = {Advances in high throughput {DNA} sequence data compression}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {3}, pages = {1630002:1--1630002:18}, year = {2016}, url = {https://doi.org/10.1142/S0219720016300021}, doi = {10.1142/S0219720016300021}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/SardarazTI16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/SharakhovAS16, author = {Igor V. Sharakhov and Gleb N. Artemov and Maria V. Sharakhova}, title = {Chromosome evolution in malaria mosquitoes inferred from physically mapped genome assemblies}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {2}, pages = {1630003:1--1630003:17}, year = {2016}, url = {https://doi.org/10.1142/S0219720016300033}, doi = {10.1142/S0219720016300033}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbcb/SharakhovAS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/ShenLZW16, author = {Fangzhou Shen and Jian Li and Ying Zhu and Zhuo Wang}, title = {Systematic investigation of metabolic reprogramming in different cancers based on tissue-specific metabolic models}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {5}, pages = {1644001:1--1644001:18}, year = {2016}, url = {https://doi.org/10.1142/S0219720016440017}, doi = {10.1142/S0219720016440017}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/ShenLZW16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/ShiliaevSG16, author = {Nikita G. Shiliaev and Olga M. Selivanova and Oxana V. Galzitskaya}, title = {Search for conserved amino acid residues of the {\(\alpha\)}-crystallin proteins of vertebrates}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {2}, pages = {1641004:1--1641004:16}, year = {2016}, url = {https://doi.org/10.1142/S0219720016410043}, doi = {10.1142/S0219720016410043}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/ShiliaevSG16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/SpirovMH16, author = {Alexander V. Spirov and Ekaterina M. Myasnikova and David M. Holloway}, title = {Sequential construction of a model for modular gene expression control, applied to spatial patterning of the \emph{Drosophila} gene \emph{hunchback}}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {2}, pages = {1641005:1--1641005:24}, year = {2016}, url = {https://doi.org/10.1142/S0219720016410055}, doi = {10.1142/S0219720016410055}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/SpirovMH16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/SuplatovPZVS16, author = {Dmitry A. Suplatov and Nina Popova and Sergey A. Zhumatiy and Vladimir V. Voevodin and Vytas K. Svedas}, title = {Parallel workflow manager for non-parallel bioinformatic applications to solve large-scale biological problems on a supercomputer}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {2}, pages = {1641008:1--1641008:15}, year = {2016}, url = {https://doi.org/10.1142/S0219720016410080}, doi = {10.1142/S0219720016410080}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/SuplatovPZVS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/VermaB16, author = {Chandra Verma and Peter J. Bond}, title = {Introductory note for {JBCB} special issue}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {6}, pages = {1602005:1--1602005:2}, year = {2016}, url = {https://doi.org/10.1142/S0219720016020054}, doi = {10.1142/S0219720016020054}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/VermaB16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/VolkovaKYVS16, author = {Oxana A. Volkova and Yury V. Kondrakhin and Ivan S. Yevshin and Tagir F. Valeev and Ruslan N. Sharipov}, title = {Assessment of translational importance of mammalian mRNA sequence features based on Ribo-Seq and mRNA-Seq data}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {2}, pages = {1641006:1--1641006:15}, year = {2016}, url = {https://doi.org/10.1142/S0219720016410067}, doi = {10.1142/S0219720016410067}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/VolkovaKYVS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/WangHLWH16, author = {Xiaoling Wang and Jingshi Han and Kui Li and Guoqing Wang and Mudong Hao}, title = {Multi-layer composite mechanical modeling for the inhomogeneous biofilm mechanical behavior}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {4}, pages = {1650014:1--1650014:14}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500141}, doi = {10.1142/S0219720016500141}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/WangHLWH16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/WuSS16, author = {Wenlei Wu and Weibin Sun and Tingzhe Sun}, title = {Modeling the heterogeneity of p53 dynamics in {DNA} damage response}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {1}, pages = {1650001:1--1650001:18}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500013}, doi = {10.1142/S0219720016500013}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/WuSS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/WuWZGSCZZ16, author = {Tingfang Wu and Xun Wang and Zheng Zhang and Faming Gong and Tao Song and Zhihua Chen and Pan Zhang and Yang Zhao}, title = {{NES-REBS:} {A} novel nuclear export signal prediction method using regular expressions and biochemical properties}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {3}, pages = {1650013:1--1650013:18}, year = {2016}, url = {https://doi.org/10.1142/S021972001650013X}, doi = {10.1142/S021972001650013X}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/WuWZGSCZZ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/YangLZ16, author = {Bin Yang and Sanrong Liu and Wei Zhang}, title = {Reverse engineering of gene regulatory network using restricted gene expression programming}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {5}, pages = {1650021:1--1650021:17}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500219}, doi = {10.1142/S0219720016500219}, timestamp = {Sun, 19 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/YangLZ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/YuHL16, author = {Shuzhi Yu and Fanchang Hao and Hon Wai Leong}, title = {An O(n3) algorithm for sorting signed genomes by reversals, transpositions, transreversals and block-interchanges}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {1}, pages = {1640002:1--1640002:17}, year = {2016}, url = {https://doi.org/10.1142/S0219720016400023}, doi = {10.1142/S0219720016400023}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/YuHL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/ZaneginaAAKS16, author = {Olga Zanegina and Evgeniy Aksianov and Andrei V. Alexeevski and Anna S. Karyagina and Sergei A. Spirin}, title = {Conserved features of complexes of TATA-box binding proteins with {DNA}}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {2}, pages = {1641007:1--1641007:18}, year = {2016}, url = {https://doi.org/10.1142/S0219720016410079}, doi = {10.1142/S0219720016410079}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/ZaneginaAAKS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/ZemlyanskayaWOL16, author = {Elena V. Zemlyanskaya and Daniil S. Wiebe and Nadezda A. Omelyanchuk and Victor G. Levitsky and Victoria V. Mironova}, title = {Meta-analysis of transcriptome data identified {TGTCNN} motif variants associated with the response to plant hormone auxin in \emph{Arabidopsis thaliana L.}}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {2}, pages = {1641009:1--1641009:16}, year = {2016}, url = {https://doi.org/10.1142/S0219720016410092}, doi = {10.1142/S0219720016410092}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/ZemlyanskayaWOL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/ZhaoJC16, author = {Yaou Zhao and Mingyan Jiang and Yuehui Chen}, title = {Inferring gene regulatory networks using a time-delayed mass action model}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {4}, pages = {1650012:1--1650012:17}, year = {2016}, url = {https://doi.org/10.1142/S0219720016500128}, doi = {10.1142/S0219720016500128}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/ZhaoJC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/ZhouCM16, author = {Shuigeng Zhou and Yi{-}Ping Phoebe Chen and Hiroshi Mamitsuka}, title = {Introduction to the special issue on {GIW} 2016}, journal = {J. Bioinform. Comput. Biol.}, volume = {14}, number = {5}, pages = {1602004:1--1602004:3}, year = {2016}, url = {https://doi.org/10.1142/S0219720016020042}, doi = {10.1142/S0219720016020042}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/ZhouCM16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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