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@article{DBLP:journals/bmcsb/AitkenA13, author = {Stuart Aitken and Ozgur E. Akman}, title = {Nested sampling for parameter inference in systems biology: application to an exemplar circadian model}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {72}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-72}, doi = {10.1186/1752-0509-7-72}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AitkenA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AmaraCCPCFBP13, author = {Flavio Amara and Riccardo Colombo and Paolo Cazzaniga and Dario Pescini and Attila Csik{\'{a}}sz{-}Nagy and Marco Falconi and Daniela Besozzi and Paolo Plevani}, title = {In vivo and in silico analysis of {PCNA} ubiquitylation in the activation of the Post Replication Repair pathway in S. cerevisiae}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {24}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-24}, doi = {10.1186/1752-0509-7-24}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AmaraCCPCFBP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/AzmiBBPLYDRSM13, author = {Asfar S. Azmi and Aliccia Bollig{-}Fischer and Bin Bao and Bum{-}Joon Park and Sun{-}Hye Lee and Gyu Yong{-}Song and Gregory Dyson and Chandan K. Reddy and Fazlul H. Sarkar and Ramzi M. Mohammad}, title = {Systems analysis reveals a transcriptional reversal of the mesenchymal phenotype induced by SNAIL-inhibitor {GN-25}}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {85}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-85}, doi = {10.1186/1752-0509-7-85}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/AzmiBBPLYDRSM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BackZB13, author = {Walter de Back and Roland Zimm and Lutz Brusch}, title = {Transdifferentiation of pancreatic cells by loss of contact-mediated signaling}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {77}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-77}, doi = {10.1186/1752-0509-7-77}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BackZB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BaeRCHKK13, author = {Taejeong Bae and Kyoohyoung Rho and Jin Woo Choi and Katsuhisa Horimoto and Wan Kyu Kim and Sunghoon Kim}, title = {Identification of upstream regulators for prognostic expression signature genes in colorectal cancer}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {86}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-86}, doi = {10.1186/1752-0509-7-86}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BaeRCHKK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BarbaDLL13, author = {Matthieu Barba and Rapha{\"{e}}l Dutoit and Christianne Legrain and Bernard Labedan}, title = {Identifying reaction modules in metabolic pathways: bioinformatic deduction and experimental validation of a new putative route in purine catabolism}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {99}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-99}, doi = {10.1186/1752-0509-7-99}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/BarbaDLL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BaumlerMRP13, author = {David J. Baumler and Bing Ma and Jennifer L. Reed and Nicole T. Perna}, title = {Inferring ancient metabolism using ancestral core metabolic models of enterobacteria}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {46}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-46}, doi = {10.1186/1752-0509-7-46}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BaumlerMRP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BershteynE13, author = {Anna Bershteyn and Philip A. Eckhoff}, title = {A model of {HIV} drug resistance driven by heterogeneities in host immunity and adherence patterns}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {11}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-11}, doi = {10.1186/1752-0509-7-11}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BershteynE13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BesshoSSSMWKDJB13, author = {Kazuhiko Bessho and Kumar Shanmukhappa and Rachel Sheridan and Pranavkumar Shivakumar and Reena Mourya and Stephanie Walters and Vivek Kaimal and Eric Dilbone and Anil G. Jegga and Jorge A. Bezerra}, title = {Integrative genomics identifies candidate microRNAs for pathogenesis of experimental biliary atresia}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {104}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-104}, doi = {10.1186/1752-0509-7-104}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BesshoSSSMWKDJB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BockmayrKGDB13, author = {Michael Bockmayr and Frederick Klauschen and Balazs Gy{\"{o}}rffy and Carsten Denkert and Jan Budczies}, title = {New network topology approaches reveal differential correlation patterns in breast cancer}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {78}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-78}, doi = {10.1186/1752-0509-7-78}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BockmayrKGDB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BogdalHKL13, author = {Marta N. Bogdal and Beata Hat and Marek Kochanczyk and Tomasz Lipniacki}, title = {Levels of pro-apoptotic regulator Bad and anti-apoptotic regulator Bcl-xL determine the type of the apoptotic logic gate}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {67}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-67}, doi = {10.1186/1752-0509-7-67}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BogdalHKL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BonnetCRSBZ13, author = {Eric Bonnet and Laurence Calzone and Daniel Rovera and Gautier Stoll and Emmanuel Barillot and Andrei Yu. Zinovyev}, title = {BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {18}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-18}, doi = {10.1186/1752-0509-7-18}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BonnetCRSBZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BorgosBSEJBENV13, author = {Sven E. F. Borgos and Sergio Bordel and H{\aa}vard Sletta and Helga Ertesv{\aa}g and {\O}yvind M. Jakobsen and Per Bruheim and Trond E. Ellingsen and Jens Nielsen and Svein Valla}, title = {Mapping global effects of the anti-sigma factor MucA in Pseudomonas fluorescens {SBW25} through genome-scale metabolic modeling}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {19}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-19}, doi = {10.1186/1752-0509-7-19}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BorgosBSEJBENV13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BrenHDKA13, author = {Anat Bren and Yuval Hart and Erez Dekel and Daniel Koster and Uri Alon}, title = {The last generation of bacterial growth in limiting nutrient}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {27}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-27}, doi = {10.1186/1752-0509-7-27}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BrenHDKA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BryantSP13, author = {William A. Bryant and Michael J. E. Sternberg and John W. Pinney}, title = {{AMBIENT:} Active Modules for Bipartite Networks - using high-throughput transcriptomic data to dissect metabolic response}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {26}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-26}, doi = {10.1186/1752-0509-7-26}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BryantSP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BuchelRSWCKMSGGIKRWHHK0MZCSSLDN13, author = {Finja B{\"{u}}chel and Nicolas Rodriguez and Neil Swainston and Clemens Wrzodek and Tobias Czauderna and Roland Keller and Florian Mittag and Michael Schubert and Mihai Glont and Martin Golebiewski and Martijn P. van Iersel and Sarah M. Keating and Matthias Rall and Michael Wybrow and Henning Hermjakob and Michael Hucka and Douglas B. Kell and Wolfgang M{\"{u}}ller and Pedro Mendes and Andreas Zell and Claudine Chaouiya and Julio Saez{-}Rodriguez and Falk Schreiber and Camille Laibe and Andreas Dr{\"{a}}ger and Nicolas Le Nov{\`{e}}re}, title = {Path2Models: large-scale generation of computational models from biochemical pathway maps}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {116}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-116}, doi = {10.1186/1752-0509-7-116}, timestamp = {Thu, 03 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BuchelRSWCKMSGGIKRWHHK0MZCSSLDN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CarreraJ13, author = {Javier Carrera and Alfonso Jaramillo}, title = {Automated design of bacterial genome sequences}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {108}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-108}, doi = {10.1186/1752-0509-7-108}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/CarreraJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChangXBP13, author = {Roger L. Chang and Lei Xie and Philip E. Bourne and Bernhard O. Palsson}, title = {Antibacterial mechanisms identified through structural systems pharmacology}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {102}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-102}, doi = {10.1186/1752-0509-7-102}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChangXBP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChaouiyaBKNIRDBCKWGDPMKXJHKTNSH13, author = {Claudine Chaouiya and Duncan B{\'{e}}renguier and Sarah M. Keating and Aur{\'{e}}lien Naldi and Martijn P. van Iersel and Nicolas Rodriguez and Andreas Dr{\"{a}}ger and Finja B{\"{u}}chel and Thomas Cokelaer and Bryan M. Kowal and Benjamin Wicks and Emanuel J. V. Gon{\c{c}}alves and Julien Dorier and Michel Page and Pedro T. Monteiro and Axel von Kamp and Ioannis Xenarios and Hidde de Jong and Michael Hucka and Steffen Klamt and Denis Thieffry and Nicolas Le Nov{\`{e}}re and Julio Saez{-}Rodriguez and Tom{\'{a}}s Helikar}, title = {{SBML} qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {135}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-135}, doi = {10.1186/1752-0509-7-135}, timestamp = {Thu, 03 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChaouiyaBKNIRDBCKWGDPMKXJHKTNSH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChengFSG13, author = {Chao Cheng and Yao Fu and Linsheng Shen and Mark Gerstein}, title = {Identification of yeast cell cycle regulated genes based on genomic features}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {70}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-70}, doi = {10.1186/1752-0509-7-70}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChengFSG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ChoWZTNC13, author = {Hyunju Cho and Ming Wu and Linxia Zhang and Ryan Thompson and Aritro Nath and Christina Chan}, title = {Signaling dynamics of palmitate-induced {ER} stress responses mediated by {ATF4} in HepG2 cells}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {9}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-9}, doi = {10.1186/1752-0509-7-9}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ChoWZTNC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CoskunCLDOO13, author = {Sarp A. Coskun and A. Erc{\"{u}}ment {\c{C}}i{\c{c}}ek and Nicola Lai and Ranjan K. Dash and Z. Meral {\"{O}}zsoyoglu and Gultekin {\"{O}}zsoyoglu}, title = {An online model composition tool for system biology models}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {88}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-88}, doi = {10.1186/1752-0509-7-88}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CoskunCLDOO13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CrespoPJS13, author = {Isaac Crespo and Thanneer M. Perumal and Wiktor Jurkowski and Antonio del Sol}, title = {Detecting cellular reprogramming determinants by differential stability analysis of gene regulatory networks}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {140}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-140}, doi = {10.1186/1752-0509-7-140}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CrespoPJS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DeminSSCPFBD13, author = {Oleg O. Demin and Sergey V. Smirnov and Victor V. Sokolov and Lourdes Cucurull{-}Sanchez and C{\'{e}}sar Pichardo{-}Almarza and M. Victoria Flores and Neil Benson and Oleg V. Demin}, title = {Modeling of celiac disease immune response and the therapeutic effect of potential drugs}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {56}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-56}, doi = {10.1186/1752-0509-7-56}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DeminSSCPFBD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/DentN13, author = {Jennifer E. Dent and Christine Nardini}, title = {From desk to bed: Computational simulations provide indication for rheumatoid arthritis clinical trials}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {10}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-10}, doi = {10.1186/1752-0509-7-10}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/DentN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/EbrahimLPH13, author = {Ali Ebrahim and Joshua A. Lerman and Bernhard {\O}. Palsson and Daniel R. Hyduke}, title = {COBRApy: COnstraints-Based Reconstruction and Analysis for Python}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {74}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-74}, doi = {10.1186/1752-0509-7-74}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/EbrahimLPH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ErgulerPD13, author = {Kamil Erguler and Myrtani Pieri and Constantinos Deltas}, title = {A mathematical model of the unfolded protein stress response reveals the decision mechanism for recovery, adaptation and apoptosis}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {16}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-16}, doi = {10.1186/1752-0509-7-16}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ErgulerPD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FazekasKTMPDZSLFVCK13, author = {D{\'{a}}vid Fazekas and Mih{\'{a}}ly Koltai and D{\'{e}}nes T{\"{u}}rei and Dezs{\"{o}} M{\'{o}}dos and M{\'{a}}t{\'{e}} P{\'{a}}lfy and Zolt{\'{a}}n D{\'{u}}l and Lilian Zs{\'{a}}kai and M{\'{a}}t{\'{e}} Szalay{-}Beko and Katalin Lenti and Ill{\'{e}}s J. Farkas and Tibor Vellai and Peter Csermely and Tam{\'{a}}s Korcsm{\'{a}}ros}, title = {SignaLink 2 - a signaling pathway resource with multi-layered regulatory networks}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {7}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-7}, doi = {10.1186/1752-0509-7-7}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/FazekasKTMPDZSLFVCK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FeltusFGS13, author = {F. Alex Feltus and Stephen P. Ficklin and Scott M. Gibson and Melissa C. Smith}, title = {Maximizing capture of gene co-expression relationships through pre-clustering of input expression samples: an Arabidopsis case study}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {44}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-44}, doi = {10.1186/1752-0509-7-44}, timestamp = {Wed, 05 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/FeltusFGS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/FlottmannKKK13, author = {Max Fl{\"{o}}ttmann and Falko Krause and Edda Klipp and Marcus Krantz}, title = {Reaction-contingency based bipartite Boolean modelling}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {58}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-58}, doi = {10.1186/1752-0509-7-58}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/FlottmannKKK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Freyre-GonzalezMMMPG13, author = {Julio A. Freyre{-}Gonz{\'{a}}lez and Alejandra M. Manjarrez{-}Casas and Enrique Merino and Mario Martinez{-}Nu{\~{n}}ez and Ernesto P{\'{e}}rez{-}Rueda and Rosa{-}Mar{\'{\i}}a Guti{\'{e}}rrez{-}R{\'{\i}}os}, title = {Lessons from the modular organization of the transcriptional regulatory network of Bacillus subtilis}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {127}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-127}, doi = {10.1186/1752-0509-7-127}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/Freyre-GonzalezMMMPG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GathererG13, author = {Derek Gatherer and Vashti Galpin}, title = {Rosen's (M, {R)} system in process algebra}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {128}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-128}, doi = {10.1186/1752-0509-7-128}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GathererG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Gelius-DietrichDFL13, author = {Gabriel Gelius{-}Dietrich and Abdelmoneim Amer Desouki and Claus Fritzemeier and Martin J. Lercher}, title = {sybil - Efficient constraint-based modelling in {R}}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {125}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-125}, doi = {10.1186/1752-0509-7-125}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Gelius-DietrichDFL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GhersiS13, author = {Dario Ghersi and Mona Singh}, title = {Disentangling function from topology to infer the network properties of disease genes}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {5}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-5}, doi = {10.1186/1752-0509-7-5}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GhersiS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GhoshBMAC13, author = {Soma Ghosh and Priyanka Baloni and Sumanta Mukherjee and Praveen Anand and Nagasuma R. Chandra}, title = {A multi-level multi-scale approach to study essential genes in Mycobacterium tuberculosis}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {132}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-132}, doi = {10.1186/1752-0509-7-132}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GhoshBMAC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/GonzalesKSM13, author = {Kevin Gonzales and {\"{O}}m{\"{u}}r Kayik{\c{c}}i and David G. Schaeffer and Paul M. Magwene}, title = {Modeling mutant phenotypes and oscillatory dynamics in the Saccharomyces cerevisiae cAMP-PKA pathway}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {40}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-40}, doi = {10.1186/1752-0509-7-40}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/GonzalesKSM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Greenfest-AllenMPS13, author = {Emily Greenfest{-}Allen and Jeffrey Malik and James Palis and Christian J. Stoeckert Jr.}, title = {Stat and interferon genes identified by network analysis differentially regulate primitive and definitive erythropoiesis}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {38}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-38}, doi = {10.1186/1752-0509-7-38}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Greenfest-AllenMPS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Guillen-GosalbezMASJ13, author = {Gonzalo Guill{\'{e}}n{-}Gos{\'{a}}lbez and Antoni Mir{\'{o}} and Rui Alves and Albert Sorribas and Laureano Jim{\'{e}}nez}, title = {Identification of regulatory structure and kinetic parameters of biochemical networks via mixed-integer dynamic optimization}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {113}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-113}, doi = {10.1186/1752-0509-7-113}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/Guillen-GosalbezMASJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HeFW13, author = {Fei He and Vincent Fromion and Hans V. Westerhoff}, title = {(Im)Perfect robustness and adaptation of metabolic networks subject to metabolic and gene-expression regulation: marrying control engineering with metabolic control analysis}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {131}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-131}, doi = {10.1186/1752-0509-7-131}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HeFW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HettlingAHBGB13, author = {Hannes Hettling and David J. C. Alders and Jaap Heringa and Thomas W. Binsl and A. B. Johan Groeneveld and Johannes H. G. M. van Beek}, title = {Computational estimation of tricarboxylic acid cycle fluxes using noisy {NMR} data from cardiac biopsies}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {82}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-82}, doi = {10.1186/1752-0509-7-82}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HettlingAHBGB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HockNHWLTWPT13, author = {Sabrina Hock and Yen{-}Kar Ng and Jan Hasenauer and Dominik M. Wittmann and Dominik Lutter and Dietrich Tr{\"{u}}mbach and Wolfgang Wurst and Nilima Prakash and Fabian J. Theis}, title = {Sharpening of expression domains induced by transcription and microRNA regulation within a spatio-temporal model of mid-hindbrain boundary formation}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {48}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-48}, doi = {10.1186/1752-0509-7-48}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/HockNHWLTWPT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HoffmannS13, author = {Max Hoffmann and Ulrich S. Schwarz}, title = {A kinetic model for RNA-interference of focal adhesions}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {2}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-2}, doi = {10.1186/1752-0509-7-2}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HoffmannS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HusiSDMVOM13, author = {Holger Husi and Maria Sanchez{-}Ni{\~{n}}o and Christian Delles and William Mullen and Antonia Vlahou and Alberto Ortiz Arduan and Harald Mischak}, title = {A combinatorial approach of Proteomics and Systems Biology in unravelling the mechanisms of acute kidney injury {(AKI):} involvement of {NMDA} receptor {GRIN1} in murine {AKI}}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {110}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-110}, doi = {10.1186/1752-0509-7-110}, timestamp = {Tue, 22 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/HusiSDMVOM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/IberG13, author = {Dagmar Iber and Christian Geyter}, title = {Computational modelling of bovine ovarian follicle development}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {60}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-60}, doi = {10.1186/1752-0509-7-60}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/IberG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ImamND13, author = {Saheed Imam and Daniel R. Noguera and Timothy J. Donohue}, title = {Global insights into energetic and metabolic networks in Rhodobacter sphaeroides}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {89}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-89}, doi = {10.1186/1752-0509-7-89}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ImamND13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/IorioSB13, author = {Francesco Iorio and Julio Saez{-}Rodriguez and Diego di Bernardo}, title = {Network based elucidation of drug response: from modulators to targets}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {139}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-139}, doi = {10.1186/1752-0509-7-139}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/IorioSB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JinZ13, author = {Suoqin Jin and Xiufen Zou}, title = {Construction of the influenza {A} virus infection-induced cell-specific inflammatory regulatory network based on mutual information and optimization}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {105}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-105}, doi = {10.1186/1752-0509-7-105}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JinZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JohnD13, author = {Peter C. St. John and Francis J. Doyle}, title = {Estimating confidence intervals in predicted responses for oscillatory biological models}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {71}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-71}, doi = {10.1186/1752-0509-7-71}, timestamp = {Fri, 07 May 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JohnD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JooPF13, author = {Jaewook Joo and Steven J. Plimpton and Jean{-}Loup Faulon}, title = {Statistical ensemble analysis for simulating extrinsic noise-driven response in NF-{\(\kappa\)}}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {45}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-45}, doi = {10.1186/1752-0509-7-45}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JooPF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/JordaSCPHGFAW13, author = {Joel Jord{\`{a}} and Camilo Suarez and Marc Carnicer and Angela ten Pierick and Joseph J. Heijnen and Walter M. van Gulik and Pau Ferrer and Joan Albiol and Aljoscha Wahl}, title = {Glucose-methanol co-utilization in Pichia pastoris studied by metabolomics and instationary \({}^{\mbox{13}}\)C flux analysis}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {17}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-17}, doi = {10.1186/1752-0509-7-17}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/JordaSCPHGFAW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KahramanogullariL13, author = {Ozan Kahramanogullari and James F. Lynch}, title = {Stochastic flux analysis of chemical reaction networks}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {133}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-133}, doi = {10.1186/1752-0509-7-133}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KahramanogullariL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KellerDTFZARNHPZD13, author = {Roland Keller and Alexander D{\"{o}}rr and Akito Tabira and Akira Funahashi and Michael J. Ziller and Richard R. Adams and Nicolas Rodriguez and Nicolas Le Nov{\`{e}}re and Noriko Hiroi and Hannes Planatscher and Andreas Zell and Andreas Dr{\"{a}}ger}, title = {The systems biology simulation core algorithm}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {55}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-55}, doi = {10.1186/1752-0509-7-55}, timestamp = {Thu, 03 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KellerDTFZARNHPZD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KimHZ13, author = {Soo{-}Jin Kim and JungWoo Ha and Byoung{-}Tak Zhang}, title = {Constructing higher-order miRNA-mRNA interaction networks in prostate cancer via hypergraph-based learning}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {47}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-47}, doi = {10.1186/1752-0509-7-47}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/KimHZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KlapaTTTM13, author = {Maria I. Klapa and Kalliopi Tsafou and Evangelos Theodoridis and Athanasios K. Tsakalidis and Nicholas K. Moschonas}, title = {Reconstruction of the experimentally supported human protein interactome: what can we learn?}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {96}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-96}, doi = {10.1186/1752-0509-7-96}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KlapaTTTM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KnupferBDN13, author = {Christian Kn{\"{u}}pfer and Clemens Beckstein and Peter Dittrich and Nicolas Le Nov{\`{e}}re}, title = {Structure, function, and behaviour of computational models in systems biology}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {43}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-43}, doi = {10.1186/1752-0509-7-43}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KnupferBDN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KotzeASADWG13, author = {Helen L. Kotze and Emily G. Armitage and Kieran J. Sharkey and James William Allwood and Warwick B. Dunn and Kaye J. Williams and Royston Goodacre}, title = {A novel untargeted metabolomics correlation-based network analysis incorporating human metabolic reconstructions}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {107}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-107}, doi = {10.1186/1752-0509-7-107}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KotzeASADWG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KrengelHTAJ13, author = {Annette Krengel and Jan Hauth and Marja{-}Riitta Taskinen and Martin Adiels and Mats Jirstrand}, title = {A continuous-time adaptive particle filter for estimations under measurement time uncertainties with an application to a plasma-leucine mixed effects model}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {8}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-8}, doi = {10.1186/1752-0509-7-8}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KrengelHTAJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KrinnerRLS13, author = {Axel Krinner and Ingo Roeder and Markus Loeffler and Markus Scholz}, title = {Merging concepts - coupling an agent-based model of hematopoietic stem cells with an {ODE} model of granulopoiesis}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {117}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-117}, doi = {10.1186/1752-0509-7-117}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KrinnerRLS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KumarBR13, author = {Gaurav Kumar and Edmond J. Breen and Shoba Ranganathan}, title = {Identification of ovarian cancer associated genes using an integrated approach in a Boolean framework}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {12}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-12}, doi = {10.1186/1752-0509-7-12}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KumarBR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KuoTT13, author = {Tien{-}Chueh Kuo and Tze{-}Feng Tian and Yufeng Jane Tseng}, title = {3Omics: a web-based systems biology tool for analysis, integration and visualization of human transcriptomic, proteomic and metabolomic data}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {64}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-64}, doi = {10.1186/1752-0509-7-64}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KuoTT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KupersteinCPVCBZ13, author = {Inna Kuperstein and David P. A. Cohen and Stuart Pook and Eric Viara and Laurence Calzone and Emmanuel Barillot and Andrei Yu. Zinovyev}, title = {NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {100}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-100}, doi = {10.1186/1752-0509-7-100}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KupersteinCPVCBZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KutumovaZSK13, author = {Elena Kutumova and Andrei Yu. Zinovyev and Ruslan N. Sharipov and Fedor A. Kolpakov}, title = {Model composition through model reduction: a combined model of {CD95} and NF-{\(\kappa\)}}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {13}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-13}, doi = {10.1186/1752-0509-7-13}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/KutumovaZSK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LasherRM13, author = {Christopher D. Lasher and Padmavathy Rajagopalan and T. M. Murali}, title = {Summarizing cellular responses as biological process networks}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {68}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-68}, doi = {10.1186/1752-0509-7-68}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LasherRM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LawlerHBC13, author = {Katherine Lawler and Kim E. Hammond{-}Kosack and Alvis Brazma and Richard M. R. Coulson}, title = {Genomic clustering and co-regulation of transcriptional networks in the pathogenic fungus Fusarium graminearum}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {52}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-52}, doi = {10.1186/1752-0509-7-52}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LawlerHBC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LeeHLCCYHLXC13, author = {Yi{-}Ying Lee and Chih{-}Yuan Hsu and Ling{-}Jiun Lin and Chih{-}Chun Chang and Hsiao{-}Chun Cheng and Tsung{-}Hsien Yeh and Rei{-}Hsing Hu and Che Lin and Zhen Xie and Bor{-}Sen Chen}, title = {Systematic design methodology for robust genetic transistors based on {I/O} specifications via promoter-RBS libraries}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {109}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-109}, doi = {10.1186/1752-0509-7-109}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LeeHLCCYHLXC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LeonMP13, author = {Miguel Ponce de Leon and Francisco Montero and Juli Peret{\'{o}}}, title = {Solving gap metabolites and blocked reactions in genome-scale models: application to the metabolic network of Blattabacterium cuenoti}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {114}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-114}, doi = {10.1186/1752-0509-7-114}, timestamp = {Mon, 25 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LeonMP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiHZLW13, author = {Pengping Li and Xu Hua and Zhen Zhang and Jie Li and Jin Wang}, title = {Characterization of regulatory features of housekeeping and tissue-specific regulators within tissue regulatory networks}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {112}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-112}, doi = {10.1186/1752-0509-7-112}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiHZLW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiLZXLZSQZCX13, author = {Ke{-}ning Li and Zi{-}hui Li and Ning Zhao and Yaoqun Xu and Yongjing Liu and Yuanshuai Zhou and Desi Shang and Fujun Qiu and Rui Zhang and Zhi{-}qiang Chang and Yan Xu}, title = {Functional analysis of microRNA and transcription factor synergistic regulatory network based on identifying regulatory motifs in non-small cell lung cancer}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {122}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-122}, doi = {10.1186/1752-0509-7-122}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/LiLZXLZSQZCX13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiV13, author = {Pu Li and Quoc Dong Vu}, title = {Identification of parameter correlations for parameter estimation in dynamic biological models}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {91}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-91}, doi = {10.1186/1752-0509-7-91}, timestamp = {Mon, 12 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiV13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiangZSGZ13, author = {Shide Liang and Dandan Zheng and Daron M. Standley and Huarong Guo and Chi Zhang}, title = {A novel function prediction approach using protein overlap networks}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {61}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-61}, doi = {10.1186/1752-0509-7-61}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiangZSGZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiebalMMLW13, author = {Ulf W. Liebal and Thomas Millat and Jon Marles{-}Wright and Richard J. Lewis and Olaf Wolkenhauer}, title = {Simulations of stressosome activation emphasize allosteric interactions between RsbR and RsbT}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {3}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-3}, doi = {10.1186/1752-0509-7-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiebalMMLW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuDCN13, author = {Yuanhua Liu and Valentina Devescovi and Suning Chen and Christine Nardini}, title = {Multilevel omic data integration in cancer cell lines: advanced annotation and emergent properties}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {14}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-14}, doi = {10.1186/1752-0509-7-14}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuDCN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MadarDBZPA13, author = {Daniel Madar and Erez Dekel and Anat Bren and Anat Zimmer and Ziv Porat and Uri Alon}, title = {Promoter activity dynamics in the lag phase of Escherichia coli}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {136}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-136}, doi = {10.1186/1752-0509-7-136}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MadarDBZPA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MarchisioCWS13, author = {Mario A. Marchisio and Moreno Colaiacovo and Ellis Whitehead and J{\"{o}}rg Stelling}, title = {Modular, rule-based modeling for the design of eukaryotic synthetic gene circuits}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {42}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-42}, doi = {10.1186/1752-0509-7-42}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MarchisioCWS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Martinez-PasamarAMMMGV13, author = {Sara Martinez{-}Pasamar and Elena Abad and Beatriz Moreno and Nieves V{\'{e}}lez de Mendiz{\'{a}}bal and Ivan Martinez{-}Forero and Jordi Garc{\'{\i}}a{-}Ojalvo and Pablo Villoslada}, title = {Dynamic cross-regulation of antigen-specific effector and regulatory {T} cell subpopulations and microglia in brain autoimmunity}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {34}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-34}, doi = {10.1186/1752-0509-7-34}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Martinez-PasamarAMMMGV13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MassucciDGMCMM13, author = {Francesco Alessandro Massucci and Mauro DiNuzzo and Federico Giove and Bruno Maraviglia and Isaac P{\'{e}}rez Castillo and Enzo Marinari and Andrea De Martino}, title = {Energy metabolism and glutamate-glutamine cycle in the brain: a stoichiometric modeling perspective}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {103}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-103}, doi = {10.1186/1752-0509-7-103}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MassucciDGMCMM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MatsuokaMKENHGSLWWFKK13, author = {Yukiko Matsuoka and Hiromi Matsumae and Manami Katoh and Amie J. Eisfeld and Gabriele Neumann and Takeshi Hase and Samik Ghosh and Jason E. Shoemaker and Tiago J. S. Lopes and Tokiko Watanabe and Shinji Watanabe and Satoshi Fukuyama and Hiroaki Kitano and Yoshihiro Kawaoka}, title = {A comprehensive map of the influenza {A} virus replication cycle}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {97}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-97}, doi = {10.1186/1752-0509-7-97}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MatsuokaMKENHGSLWWFKK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MayburdB13, author = {Anatoly L. Mayburd and Ancha V. Baranova}, title = {Knowledge-based compact disease models identify new molecular players contributing to early-stage Alzheimer's disease}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {121}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-121}, doi = {10.1186/1752-0509-7-121}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MayburdB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MisraS13, author = {Ashish Misra and Ganesh Sriram}, title = {Network component analysis provides quantitative insights on an Arabidopsis transcription factor-gene regulatory network}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {126}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-126}, doi = {10.1186/1752-0509-7-126}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MisraS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MohammadiSG13, author = {Shahin Mohammadi and Shankar Subramaniam and Ananth Grama}, title = {Inferring the effective TOR-dependent network: a computational study in yeast}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {84}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-84}, doi = {10.1186/1752-0509-7-84}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MohammadiSG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MuellerBPM13, author = {Thomas J. Mueller and Bertram M. Berla and Himadri B. Pakrasi and Costas D. Maranas}, title = {Rapid construction of metabolic models for a family of Cyanobacteria using a multiple source annotation workflow}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {142}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-142}, doi = {10.1186/1752-0509-7-142}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MuellerBPM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/NieY13, author = {Yaling Nie and Jingkai Yu}, title = {Mining breast cancer genes with a network based noise-tolerant approach}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {49}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-49}, doi = {10.1186/1752-0509-7-49}, timestamp = {Wed, 19 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/NieY13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/NilufarMLP13, author = {Sharmin Nilufar and Anne Morrow and Jonathan Lee and Theodore J. Perkins}, title = {FiloDetect: automatic detection of filopodia from fluorescence microscopy images}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {66}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-66}, doi = {10.1186/1752-0509-7-66}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/NilufarMLP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/NishioOIYUMT13, author = {Yousuke Nishio and Soichi Ogishima and Masao Ichikawa and Yohei Yamada and Yoshihiro Usuda and Tadashi Masuda and Hiroshi Tanaka}, title = {Analysis of l-glutamic acid fermentation by using a dynamic metabolic simulation model of Escherichia coli}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {92}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-92}, doi = {10.1186/1752-0509-7-92}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/NishioOIYUMT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/NohSSHKJCKC13, author = {Kyungchul Noh and Kyung Soon Shin and Dongkwan Shin and Jae Yeon Hwang and June Sic Kim and Joon Hwan Jang and Chun Kee Chung and Jun Soo Kwon and Kwang{-}Hyun Cho}, title = {Impaired coupling of local and global functional feedbacks underlies abnormal synchronization and negative symptoms of schizophrenia}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {30}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-30}, doi = {10.1186/1752-0509-7-30}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/NohSSHKJCKC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/OguzLCWBT13, author = {Cihan Oguz and Teeraphan Laomettachit and Katherine C. Chen and Layne T. Watson and William T. Baumann and John J. Tyson}, title = {Optimization and model reduction in the high dimensional parameter space of a budding yeast cell cycle model}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {53}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-53}, doi = {10.1186/1752-0509-7-53}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/OguzLCWBT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/OliveiraBBFIZ13, author = {Juliana Oliveira and Anderson de Brito and Carla Braconi and Caio de Melo Freire and Atila Iamarino and Paolo de Andrade Zanotto}, title = {Modularity and evolutionary constraints in a baculovirus gene regulatory network}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {87}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-87}, doi = {10.1186/1752-0509-7-87}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/OliveiraBBFIZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/OoiM13, author = {Hsu Kiang Ooi and Lan Ma}, title = {Modeling heterogeneous responsiveness of intrinsic apoptosis pathway}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {65}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-65}, doi = {10.1186/1752-0509-7-65}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/OoiM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/OsterlundNBN13, author = {Tobias {\"{O}}sterlund and Intawat Nookaew and Sergio Bordel and Jens Nielsen}, title = {Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {36}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-36}, doi = {10.1186/1752-0509-7-36}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/OsterlundNBN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PalssonHBZJOSPV13, author = {Sirus Palsson and Timothy P. Hickling and Erica L. Bradshaw{-}Pierce and Michael Zager and Karin Jooss and Peter O'Brien and Mary E. Spilker and Bernhard {\O}. Palsson and Paolo Vicini}, title = {The development of a fully-integrated immune response model {(FIRM)} simulator of the immune response through integration of multiple subset models}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {95}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-95}, doi = {10.1186/1752-0509-7-95}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PalssonHBZJOSPV13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PertsovskayaADGV13, author = {Inna Pertsovskaya and Elena Abad and N{\'{u}}ria Domedel{-}Puig and Jordi Garc{\'{\i}}a{-}Ojalvo and Pablo Villoslada}, title = {Transient oscillatory dynamics of interferon beta signaling in macrophages}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {59}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-59}, doi = {10.1186/1752-0509-7-59}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PertsovskayaADGV13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PeyTCP13, author = {Jon Pey and Luis Tobalina and Joaqu{\'{\i}}n Prada J. de Cisneros and Francisco J. Planes}, title = {A network-based approach for predicting key enzymes explaining metabolite abundance alterations in a disease phenotype}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {62}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-62}, doi = {10.1186/1752-0509-7-62}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PeyTCP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PeyVRBP13, author = {Jon Pey and Kaspar Valgepea and Angel Rubio and John E. Beasley and Francisco J. Planes}, title = {Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathways}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {134}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-134}, doi = {10.1186/1752-0509-7-134}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PeyVRBP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PinnaHFFK13, author = {Andrea Pinna and Sandra Heise and Robert J. Flassig and Alberto de la Fuente and Steffen Klamt}, title = {Reconstruction of large-scale regulatory networks based on perturbation graphs and transitive reduction: improved methods and their evaluation}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {73}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-73}, doi = {10.1186/1752-0509-7-73}, timestamp = {Mon, 08 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/PinnaHFFK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PokhilkoMM13, author = {Alexandra V. Pokhilko and Paloma Mas and Andrew J. Millar}, title = {Modelling the widespread effects of {TOC1} signalling on the plant circadian clock and its outputs}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {23}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-23}, doi = {10.1186/1752-0509-7-23}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PokhilkoMM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/PradhanDP13, author = {Meeta Pradhan and Akshay Desai and Mathew J. Palakal}, title = {Systems biology approach to stage-wise characterization of epigenetic genes in lung adenocarcinoma}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {141}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-141}, doi = {10.1186/1752-0509-7-141}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/PradhanDP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RanLFLXLSCJLL13, author = {Jihua Ran and Hui Li and Jianfeng Fu and Ling Liu and Yanchao Xing and Xiumei Li and Hongming Shen and Yan Chen and Xiaofang Jiang and Yan Li and Huiwu Li}, title = {Construction and analysis of the protein-protein interaction network related to essential hypertension}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {32}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-32}, doi = {10.1186/1752-0509-7-32}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RanLFLXLSCJLL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RanolaLLH13, author = {John M. O. Ranola and Peter Langfelder and Kenneth Lange and Steve Horvath}, title = {Cluster and propensity based approximation of a network}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {21}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-21}, doi = {10.1186/1752-0509-7-21}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RanolaLLH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RauJN13, author = {Andrea Rau and Florence Jaffr{\'{e}}zic and Gr{\'{e}}gory Nuel}, title = {Joint estimation of causal effects from observational and intervention gene expression data}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {111}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-111}, doi = {10.1186/1752-0509-7-111}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RauJN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RaySY13, author = {Debjit Ray and Yongchun Su and Ping Ye}, title = {Dynamic modeling of yeast meiotic initiation}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {37}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-37}, doi = {10.1186/1752-0509-7-37}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RaySY13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/RiemerRS13, author = {S. Alexander Riemer and Rene Rex and Dietmar Schomburg}, title = {A metabolite-centric view on flux distributions in genome-scale metabolic models}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {33}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-33}, doi = {10.1186/1752-0509-7-33}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/RiemerRS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Rodriguez-FernandezRKB13, author = {Maria Rodriguez{-}Fernandez and Markus Rehberg and Andreas Kremling and Julio R. Banga}, title = {Simultaneous model discrimination and parameter estimation in dynamic models of cellular systems}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {76}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-76}, doi = {10.1186/1752-0509-7-76}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Rodriguez-FernandezRKB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SaithongRKCSNSMC13, author = {Treenut Saithong and Oratai Rongsirikul and Saowalak Kalapanulak and Porntip Chiewchankaset and Wanatsanan Siriwat and Supatcharee Netrphan and Malinee Suksangpanomrung and Asawin Meechai and Supapon Cheevadhanarak}, title = {Starch biosynthesis in cassava: a genome-based pathway reconstruction and its exploitation in data integration}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {75}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-75}, doi = {10.1186/1752-0509-7-75}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SaithongRKCSNSMC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SalernoCMBA13, author = {Luca Salerno and Carlo Cosentino and Alessio Merola and Declan G. Bates and Francesco Amato}, title = {Validation of a model of the {GAL} regulatory system via robustness analysis of its bistability characteristics}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {39}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-39}, doi = {10.1186/1752-0509-7-39}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SalernoCMBA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Sands13, author = {Tim Sands}, title = {Annual acknowledgement of reviewers}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {35}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-35}, doi = {10.1186/1752-0509-7-35}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Sands13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SantraKK13, author = {Tapesh Santra and Walter Kolch and Boris N. Kholodenko}, title = {Integrating Bayesian variable selection with Modular Response Analysis to infer biochemical network topology}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {57}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-57}, doi = {10.1186/1752-0509-7-57}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SantraKK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SchaadtSHH13, author = {Nadine S. Schaadt and Anke Steinbach and Rolf W. Hartmann and Volkhard Helms}, title = {Rule-based regulatory and metabolic model for Quorum sensing in P. aeruginosa}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {81}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-81}, doi = {10.1186/1752-0509-7-81}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SchaadtSHH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SenVR13, author = {Partho Sen and Henri J. Vial and Ovidiu Radulescu}, title = {Kinetic modelling of phospholipid synthesis in Plasmodium knowlesi unravels crucial steps and relative importance of multiple pathways}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {123}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-123}, doi = {10.1186/1752-0509-7-123}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SenVR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ShiXZXLWZJGL13, author = {Hongbo Shi and Juan Xu and Guangde Zhang and Liangde Xu and Chunquan Li and Li Wang and Zheng Zhao and Wei Jiang and Zheng Guo and Xia Li}, title = {Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {101}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-101}, doi = {10.1186/1752-0509-7-101}, timestamp = {Fri, 19 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ShiXZXLWZJGL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ShinCSHS13, author = {Yong{-}Jun Shin and Kai{-}Yuan Chen and Ali H. Sayed and Brandon Hencey and Xiling Shen}, title = {Post-translational regulation enables robust p53 regulation}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {83}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-83}, doi = {10.1186/1752-0509-7-83}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ShinCSHS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SimchaYAG13, author = {David M. Simcha and Laurent Younes and Martin J. Aryee and Donald Geman}, title = {Identification of direction in gene networks from expression and methylation}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {118}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-118}, doi = {10.1186/1752-0509-7-118}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/SimchaYAG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SlawekA13, author = {Janusz Slawek and Tomasz Arodz}, title = {{ENNET:} inferring large gene regulatory networks from expression data using gradient boosting}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {106}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-106}, doi = {10.1186/1752-0509-7-106}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SlawekA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SmithS13, author = {Graham R. Smith and Daryl P. Shanley}, title = {Computational modelling of the regulation of Insulin signalling by oxidative stress}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {41}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-41}, doi = {10.1186/1752-0509-7-41}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SmithS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/SrivastavaHBPA13, author = {Prashant K. Srivastava and Richard P. Hull and Jacques Behmoaras and Enrico Petretto and Timothy J. Aitman}, title = {JunD/AP1 regulatory network analysis during macrophage activation in a rat model of crescentic glomerulonephritis}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {93}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-93}, doi = {10.1186/1752-0509-7-93}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/SrivastavaHBPA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/StobbeSTRKM13, author = {Miranda D. Stobbe and Morris A. Swertz and Ines Thiele and Trebor Rengaw and Antoine H. C. van Kampen and Perry D. Moerland}, title = {Consensus and conflict cards for metabolic pathway databases}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {50}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-50}, doi = {10.1186/1752-0509-7-50}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/StobbeSTRKM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TabbaaNSHJ13, author = {Omar P. Tabbaa and German Nudelman and Stuart C. Sealfon and Fernand Hayot and Ciriyam Jayaprakash}, title = {Noise propagation through extracellular signaling leads to fluctuations in gene expression}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {94}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-94}, doi = {10.1186/1752-0509-7-94}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TabbaaNSHJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TchitchekETJGBTWFTLNMSWBKK13, author = {Nicolas Tchitchek and Amie J. Eisfeld and Jennifer Tisoncik{-}Go and Laurence Josset and Lisa E. Gralinski and Christophe B{\'{e}}cavin and Susan C. Tilton and Bobbie{-}Jo M. Webb{-}Robertson and Martin T. Ferris and Allison L. Totura and Chengjun Li and Gabriele Neumann and Thomas O. Metz and Richard D. Smith and Katrina M. Waters and Ralph S. Baric and Yoshihiro Kawaoka and Michael G. Katze}, title = {Specific mutations in {H5N1} mainly impact the magnitude and velocity of the host response in mice}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {69}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-69}, doi = {10.1186/1752-0509-7-69}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TchitchekETJGBTWFTLNMSWBKK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TorchalaCKB13, author = {Mieczyslaw Torchala and Przemyslaw Chelminiak and Michal Kurzynski and Paul A. Bates}, title = {RaTrav: a tool for calculating mean first-passage times on biochemical networks}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {130}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-130}, doi = {10.1186/1752-0509-7-130}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TorchalaCKB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TreloarSHMLMB13, author = {Katrina K. Treloar and Matthew J. Simpson and Parvathi Haridas and Kerry J. Manton and David I. Leavesley and Donald L. S. McElwain and Ruth E. Baker}, title = {Multiple types of data are required to identify the mechanisms influencing the spatial expansion of melanoma cell colonies}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {137}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-137}, doi = {10.1186/1752-0509-7-137}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TreloarSHMLMB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/TrifonovPFR13, author = {Vladimir Trifonov and Laura Pasqualucci and Riccardo Dalla Favera and Raul Rabadan}, title = {MutComFocal: an integrative approach to identifying recurrent and focal genomic alterations in tumor samples}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {25}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-25}, doi = {10.1186/1752-0509-7-25}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/TrifonovPFR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/VafaeeRBJ13, author = {Fatemeh Vafaee and Daniela Rosu and Fiona Broackes{-}Carter and Igor Jurisica}, title = {Novel semantic similarity measure improves an integrative approach to predicting gene functional associations}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {22}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-22}, doi = {10.1186/1752-0509-7-22}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/VafaeeRBJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Vazquez13, author = {Alexei Vazquez}, title = {Optimization of personalized therapies for anticancer treatment}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {31}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-31}, doi = {10.1186/1752-0509-7-31}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Vazquez13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Vital-LopezWR13, author = {Francisco G. Vital{-}Lopez and Anders Wallqvist and Jaques Reifman}, title = {Bridging the gap between gene expression and metabolic phenotype via kinetic models}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {63}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-63}, doi = {10.1186/1752-0509-7-63}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Vital-LopezWR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/VogtCS13, author = {Torsten Vogt and Tobias Czauderna and Falk Schreiber}, title = {Translation of {SBGN} maps: Process Description to Activity Flow}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {115}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-115}, doi = {10.1186/1752-0509-7-115}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/VogtCS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangLCHLCC13, author = {Yu{-}Chao Wang and Che Lin and Ming{-}Ta Chuang and Wen{-}Ping Hsieh and Chung{-}Yu Lan and Yung{-}Jen Chuang and Bor{-}Sen Chen}, title = {Interspecies protein-protein interaction network construction for characterization of host-pathogen interactions: a Candida albicans-zebrafish interaction study}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {79}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-79}, doi = {10.1186/1752-0509-7-79}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WangLCHLCC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangPXLP13, author = {Jianxin Wang and Xiaoqing Peng and Qianghua Xiao and Min Li and Yi Pan}, title = {An effective method for refining predicted protein complexes based on protein activity and the mechanism of protein complex formation}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {28}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-28}, doi = {10.1186/1752-0509-7-28}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WangPXLP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangVHPW13, author = {Qinghua Wang and Keerthi Venkataramanan and Hongzhan Huang and Eleftherios T. Papoutsakis and Cathy H. Wu}, title = {Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {120}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-120}, doi = {10.1186/1752-0509-7-120}, timestamp = {Wed, 10 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/WangVHPW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WeberB13, author = {Marc Weber and Javier Buceta}, title = {Dynamics of the quorum sensing switch: stochastic and non-stationary effects}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {6}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-6}, doi = {10.1186/1752-0509-7-6}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WeberB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WeberHVGZD13, author = {Michael Weber and Sebastian Henkel and Sebastian Vlaic and Reinhard Guthke and Everardus J. van Zoelen and Dominik Driesch}, title = {Inference of dynamical gene-regulatory networks based on time-resolved multi-stimuli multi-experiment data applying NetGenerator {V2.0}}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {1}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-1}, doi = {10.1186/1752-0509-7-1}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WeberHVGZD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WeberSKGZ13, author = {Michael Weber and Ana M. Sotoca and Peter Kupfer and Reinhard Guthke and Everardus J. van Zoelen}, title = {Dynamic modelling of microRNA regulation during mesenchymal stem cell differentiation}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {124}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-124}, doi = {10.1186/1752-0509-7-124}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WeberSKGZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Williams-DeVaneRHBHGE13, author = {ClarLynda R. Williams{-}DeVane and David M. Reif and Elaine Cohen Hubal and Pierre R. Bushel and Edward E. Hudgens and Jane E. Gallagher and Stephen W. Edwards}, title = {Decision tree-based method for integrating gene expression, demographic, and clinical data to determine disease endotypes}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {119}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-119}, doi = {10.1186/1752-0509-7-119}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/Williams-DeVaneRHBHGE13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WinklerF13, author = {Jessica M. Winkler and Howard S. Fox}, title = {Transcriptome meta-analysis reveals a central role for sex steroids in the degeneration of hippocampal neurons in Alzheimer's disease}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {51}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-51}, doi = {10.1186/1752-0509-7-51}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WinklerF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WinterbachMRWR13, author = {Wynand Winterbach and Piet Van Mieghem and Marcel J. T. Reinders and Huijuan Wang and Dick de Ridder}, title = {Topology of molecular interaction networks}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {90}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-90}, doi = {10.1186/1752-0509-7-90}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WinterbachMRWR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WintermuteLS13, author = {Edwin H. Wintermute and Tami D. Lieberman and Pamela A. Silver}, title = {An objective function exploiting suboptimal solutions in metabolic networks}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {98}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-98}, doi = {10.1186/1752-0509-7-98}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WintermuteLS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WrzodekBRDZ13, author = {Clemens Wrzodek and Finja B{\"{u}}chel and Manuel Ruff and Andreas Dr{\"{a}}ger and Andreas Zell}, title = {Precise generation of systems biology models from {KEGG} pathways}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {15}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-15}, doi = {10.1186/1752-0509-7-15}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WrzodekBRDZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YangDMHJPD13, author = {Ruoting Yang and Bernie J. Daigle Jr. and Seid Y. Muhie and Rasha Hammamieh and Marti Jett and Linda R. Petzold and Francis J. Doyle III}, title = {Core modular blood and brain biomarkers in social defeat mouse model for post traumatic stress disorder}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {80}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-80}, doi = {10.1186/1752-0509-7-80}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YangDMHJPD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YinV13, author = {Weiwei Yin and Eberhard O. Voit}, title = {Function and design of the Nox1 system in vascular smooth muscle cells}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {20}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-20}, doi = {10.1186/1752-0509-7-20}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YinV13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YousofshahiOLH13, author = {Mona Yousofshahi and Michael Orshansky and Kyongbum Lee and Soha Hassoun}, title = {Probabilistic strain optimization under constraint uncertainty}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {29}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-29}, doi = {10.1186/1752-0509-7-29}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/YousofshahiOLH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YousofshahiUSH13, author = {Mona Yousofshahi and Ehsan Ullah and Russell Stern and Soha Hassoun}, title = {MC\({}^{\mbox{3}}\): a steady-state model and constraint consistency checker for biochemical networks}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {129}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-129}, doi = {10.1186/1752-0509-7-129}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YousofshahiUSH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YvertONIFSO13, author = {Ga{\"{e}}l Yvert and Shinsuke Ohnuki and Satoru Nogami and Yasutaka Imanaga and Steffen Fehrmann and Joseph Schacherer and Yoshikazu Ohya}, title = {Single-cell phenomics reveals intra-species variation of phenotypic noise in yeast}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {54}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-54}, doi = {10.1186/1752-0509-7-54}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YvertONIFSO13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhangGS13, author = {Xia Zhang and M. Heather West Greenlee and Jeanne M. Serb}, title = {EnRICH: Extraction and Ranking using Integration and Criteria Heuristics}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {4}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-4}, doi = {10.1186/1752-0509-7-4}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhangGS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ZhouVWWWBO13, author = {Yi Zhou and Alexei Vazquez and Aaron Wise and Tomoko Warita and Katsuhiko Warita and Ziv Bar{-}Joseph and Zolt{\'{a}}n N. Oltvai}, title = {Carbon catabolite repression correlates with the maintenance of near invariant molecular crowding in proliferating E. coli cells}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {138}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-138}, doi = {10.1186/1752-0509-7-138}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/ZhouVWWWBO13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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