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@article{DBLP:journals/bioinformatics/AbakaBE13,
  author       = {Gamze Abaka and
                  T{\"{u}}rker B{\'{\i}}y{\'{\i}}koglu and
                  Cesim Erten},
  title        = {CAMPways: constrained alignment framework for the comparative analysis
                  of a pair of metabolic pathways},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {145--153},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt235},
  doi          = {10.1093/BIOINFORMATICS/BTT235},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AbakaBE13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AbbasiPLPM13,
  author       = {Maryam Abbasi and
                  Lu{\'{\i}}s Paquete and
                  Arnaud Liefooghe and
                  Miguel Pinheiro and
                  Pedro Matias},
  title        = {Improvements on bicriteria pairwise sequence alignment: algorithms
                  and applications},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {996--1003},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt098},
  doi          = {10.1093/BIOINFORMATICS/BTT098},
  timestamp    = {Sat, 18 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AbbasiPLPM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AbrishamiZRVOMSCS13,
  author       = {Vahid Abrishami and
                  Airen Zald{\'{\i}}var{-}Peraza and
                  Jos{\'{e}} Miguel de la Rosa{-}Trev{\'{\i}}n and
                  Javier Vargas and
                  Joaqu{\'{\i}}n Ot{\'{o}}n and
                  Roberto Marabini and
                  Yoel Shkolnisky and
                  Jos{\'{e}} Mar{\'{\i}}a Carazo and
                  Carlos Oscar S{\'{a}}nchez Sorzano},
  title        = {A pattern matching approach to the automatic selection of particles
                  from low-contrast electron micrographs},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2460--2468},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt429},
  doi          = {10.1093/BIOINFORMATICS/BTT429},
  timestamp    = {Tue, 22 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AbrishamiZRVOMSCS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AdamsCYHTALGSATMGG13,
  author       = {Richard R. Adams and
                  Allan Clark and
                  Azusa Yamaguchi and
                  Neil Hanlon and
                  Nikos Tsorman and
                  Shakir Ali and
                  Galina Lebedeva and
                  Alexey N. Goltsov and
                  Anatoly A. Sorokin and
                  Ozgur E. Akman and
                  Carl Troein and
                  Andrew J. Millar and
                  Igor Goryanin and
                  Stephen Gilmore},
  title        = {{SBSI:} an extensible distributed software infrastructure for parameter
                  estimation in systems biology},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {664--665},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt023},
  doi          = {10.1093/BIOINFORMATICS/BTT023},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AdamsCYHTALGSATMGG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AerniLDGNGLPKB13,
  author       = {Sarah J. Aerni and
                  Xiao Liu and
                  Chuong B. Do and
                  Samuel S. Gross and
                  Andy Nguyen and
                  Stephen D. Guo and
                  Fuhui Long and
                  Hanchuan Peng and
                  Stuart S. Kim and
                  Serafim Batzoglou},
  title        = {Automated cellular annotation for high-resolution images of adult
                  \emph{Caenorhabditis elegans}},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {18--26},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt223},
  doi          = {10.1093/BIOINFORMATICS/BTT223},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AerniLDGNGLPKB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AgostiniZKMCT13,
  author       = {Federico Agostini and
                  Andreas Zanzoni and
                  Petr Klus and
                  Domenica Marchese and
                  Davide Cirillo and
                  Gian Gaetano Tartaglia},
  title        = {\emph{cat}RAPID \emph{omics}: a web server for large-scale prediction
                  of protein-RNA interactions},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2928--2930},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt495},
  doi          = {10.1093/BIOINFORMATICS/BTT495},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AgostiniZKMCT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AguiarI13,
  author       = {Derek Aguiar and
                  Sorin Istrail},
  title        = {Haplotype assembly in polyploid genomes and identical by descent shared
                  tracts},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {352--360},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt213},
  doi          = {10.1093/BIOINFORMATICS/BTT213},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AguiarI13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AhnYPSDWW13,
  author       = {Jaeil Ahn and
                  Ying Yuan and
                  Giovanni Parmigiani and
                  Milind B. Suraokar and
                  Lixia Diao and
                  Ignacio I. Wistuba and
                  Wenyi Wang},
  title        = {DeMix: deconvolution for mixed cancer transcriptomes using raw measured
                  data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {15},
  pages        = {1865--1871},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt301},
  doi          = {10.1093/BIOINFORMATICS/BTT301},
  timestamp    = {Fri, 26 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AhnYPSDWW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AijoGL13,
  author       = {Tarmo {\"{A}}ij{\"{o}} and
                  Kirsi Granberg and
                  Harri L{\"{a}}hdesm{\"{a}}ki},
  title        = {Sorad: a systems biology approach to predict and modulate dynamic
                  signaling pathway response from phosphoproteome time-course measurements},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {10},
  pages        = {1283--1291},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt130},
  doi          = {10.1093/BIOINFORMATICS/BTT130},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AijoGL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AksoyGDWRJCS13,
  author       = {B{\"{u}}lent Arman Aksoy and
                  Jianjiong Gao and
                  Gideon Dresdner and
                  Weiqing Wang and
                  Alex Root and
                  Xiaohong Jing and
                  Ethan G. Cerami and
                  Chris Sander},
  title        = {PiHelper: an open source framework for drug-target and antibody-target
                  data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {2071--2072},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt345},
  doi          = {10.1093/BIOINFORMATICS/BTT345},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AksoyGDWRJCS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AladagE13,
  author       = {Ahmet Emre Aladag and
                  Cesim Erten},
  title        = {{SPINAL:} scalable protein interaction network alignment},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {7},
  pages        = {917--924},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt071},
  doi          = {10.1093/BIOINFORMATICS/BTT071},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AladagE13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlaimoPGF13,
  author       = {Salvatore Alaimo and
                  Alfredo Pulvirenti and
                  Rosalba Giugno and
                  Alfredo Ferro},
  title        = {Drug-target interaction prediction through domain-tuned network-based
                  inference},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {2004--2008},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt307},
  doi          = {10.1093/BIOINFORMATICS/BTT307},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AlaimoPGF13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlbaneseFVRJF13,
  author       = {Davide Albanese and
                  Michele Filosi and
                  Roberto Visintainer and
                  Samantha Riccadonna and
                  Giuseppe Jurman and
                  Cesare Furlanello},
  title        = {minerva and minepy: a {C} engine for the {MINE} suite and its R, Python
                  and {MATLAB} wrappers},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {407--408},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts707},
  doi          = {10.1093/BIOINFORMATICS/BTS707},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AlbaneseFVRJF13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlexandrovB13,
  author       = {Theodore Alexandrov and
                  Andreas M. Bartels},
  title        = {Testing for presence of known and unknown molecules in imaging mass
                  spectrometry},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2335--2342},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt388},
  doi          = {10.1093/BIOINFORMATICS/BTT388},
  timestamp    = {Tue, 19 Jan 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AlexandrovB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlicPMA13,
  author       = {Andrei Alic and
                  Jos{\'{e}} E. P{\'{e}}rez{-}Ort{\'{\i}}n and
                  Joaqu{\'{\i}}n Moreno and
                  Vicente Arnau},
  title        = {mRNAStab - a web application for mRNA stability analysis},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {813--814},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt040},
  doi          = {10.1093/BIOINFORMATICS/BTT040},
  timestamp    = {Sun, 25 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AlicPMA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AllotAPRPL13,
  author       = {Alexis Allot and
                  Yannick{-}No{\"{e}}l Anno and
                  Laetitia Poidevin and
                  Raymond Ripp and
                  Olivier Poch and
                  Odile Lecompte},
  title        = {{PARSEC:} PAtteRn SEarch and Contextualization},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2643--2644},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt455},
  doi          = {10.1093/BIOINFORMATICS/BTT455},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AllotAPRPL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AmatMK13,
  author       = {Fernando Amat and
                  Eugene W. Myers and
                  Philipp J. Keller},
  title        = {Fast and robust optical flow for time-lapse microscopy using super-voxels},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {373--380},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts706},
  doi          = {10.1093/BIOINFORMATICS/BTS706},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AmatMK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AmbroisePDRJIRG13,
  author       = {J{\'{e}}r{\^{o}}me Ambroise and
                  Anne{-}Sophie Piette and
                  Cathy Delcorps and
                  Leen Rigouts and
                  Bouke C. de Jong and
                  Leonid Irenge and
                  Annie Robert and
                  Jean{-}Luc Gala},
  title        = {AdvISER-PYRO: Amplicon Identification using SparsE Representation
                  of PYROsequencing signal},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {1963--1969},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt339},
  doi          = {10.1093/BIOINFORMATICS/BTT339},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AmbroisePDRJIRG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AmesHGLGA13,
  author       = {Sasha Ames and
                  David A. Hysom and
                  Shea N. Gardner and
                  G. Scott Lloyd and
                  Maya B. Gokhale and
                  Jonathan E. Allen},
  title        = {Scalable metagenomic taxonomy classification using a reference genome
                  database},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2253--2260},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt389},
  doi          = {10.1093/BIOINFORMATICS/BTT389},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AmesHGLGA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AndersonHMVLTH13,
  author       = {James W. J. Anderson and
                  Pierre A. Haas and
                  Leigh{-}Anne Mathieson and
                  Vladimir Volynkin and
                  Rune B. Lyngs{\o} and
                  Paula Tataru and
                  Jotun Hein},
  title        = {Oxfold: kinetic folding of {RNA} using stochastic context-free grammars
                  and evolutionary information},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {704--710},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt050},
  doi          = {10.1093/BIOINFORMATICS/BTT050},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AndersonHMVLTH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AndreaniFG13,
  author       = {Jessica Andreani and
                  Guilhem Faure and
                  Rapha{\"{e}}l Gu{\'{e}}rois},
  title        = {InterEvScore: a novel coarse-grained interface scoring function using
                  a multi-body statistical potential coupled to evolution},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1742--1749},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt260},
  doi          = {10.1093/BIOINFORMATICS/BTT260},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AndreaniFG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AndreattaLN13,
  author       = {Massimo Andreatta and
                  Ole Lund and
                  Morten Nielsen},
  title        = {Simultaneous alignment and clustering of peptide data using a Gibbs
                  sampling approach},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {8--14},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts621},
  doi          = {10.1093/BIOINFORMATICS/BTS621},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AndreattaLN13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AntoniottiBCCGM13,
  author       = {Marco Antoniotti and
                  Gary D. Bader and
                  Giulio Caravagna and
                  Silvia Crippa and
                  Alex Graudenzi and
                  Giancarlo Mauri},
  title        = {GeStoDifferent: a Cytoscape plugin for the generation and the identification
                  of gene regulatory networks describing a stochastic cell differentiation
                  process},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {513--514},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts726},
  doi          = {10.1093/BIOINFORMATICS/BTS726},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AntoniottiBCCGM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArakelyanN13,
  author       = {Arsen Arakelyan and
                  Lilit Nersisyan},
  title        = {KEGGParser: parsing and editing {KEGG} pathway maps in Matlab},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {518--519},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts730},
  doi          = {10.1093/BIOINFORMATICS/BTS730},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ArakelyanN13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArenasSPB13,
  author       = {Miguel Arenas and
                  Helena G. Dos Santos and
                  David Posada and
                  Ugo Bastolla},
  title        = {Protein evolution along phylogenetic histories under structurally
                  constrained substitution models},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {3020--3028},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt530},
  doi          = {10.1093/BIOINFORMATICS/BTT530},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ArenasSPB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArtigaudGP13,
  author       = {S{\'{e}}bastien Artigaud and
                  Olivier Gauthier and
                  Vianney Pichereau},
  title        = {Identifying differentially expressed proteins in two-dimensional electrophoresis
                  experiments: inputs from transcriptomics statistical tools},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2729--2734},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt464},
  doi          = {10.1093/BIOINFORMATICS/BTT464},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ArtigaudGP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArunapuramEGANSH13,
  author       = {Preeti Arunapuram and
                  Ingolfur Edvardsson and
                  Michael Golden and
                  James W. J. Anderson and
                  {\'{A}}d{\'{a}}m Nov{\'{a}}k and
                  Zsuzsanna S{\"{u}}k{\"{o}}sd and
                  Jotun Hein},
  title        = {StatAlign 2.0: combining statistical alignment with {RNA} secondary
                  structure prediction},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {654--655},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt025},
  doi          = {10.1093/BIOINFORMATICS/BTT025},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ArunapuramEGANSH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AschoffHGFEK13,
  author       = {Moritz Aschoff and
                  Agnes Hotz{-}Wagenblatt and
                  Karl{-}Heinz Glatting and
                  Matthias Fischer and
                  Roland Eils and
                  Rainer K{\"{o}}nig},
  title        = {SplicingCompass: differential splicing detection using RNA-Seq data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1141--1148},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt101},
  doi          = {10.1093/BIOINFORMATICS/BTT101},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AschoffHGFEK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AshoorHKRBBB13,
  author       = {Haitham Ashoor and
                  Aur{\'{e}}lie H{\'{e}}rault and
                  Aur{\'{e}}lie Kamoun and
                  Fran{\c{c}}ois Radvanyi and
                  Vladimir B. Bajic and
                  Emmanuel Barillot and
                  Valentina Boeva},
  title        = {HMCan: a method for detecting chromatin modifications in cancer samples
                  using ChIP-seq data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {2979--2986},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt524},
  doi          = {10.1093/BIOINFORMATICS/BTT524},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AshoorHKRBBB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AuerbachCB13,
  author       = {Raymond K. Auerbach and
                  Bin Chen and
                  Atul J. Butte},
  title        = {Relating genes to function: identifying enriched transcription factors
                  using the {ENCODE} ChIP-Seq significance tool},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {15},
  pages        = {1922--1924},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt316},
  doi          = {10.1093/BIOINFORMATICS/BTT316},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AuerbachCB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AzencottGSKB13,
  author       = {Chlo{\'{e}}{-}Agathe Azencott and
                  Dominik G. Grimm and
                  Mahito Sugiyama and
                  Yoshinobu Kawahara and
                  Karsten M. Borgwardt},
  title        = {Efficient network-guided multi-locus association mapping with graph
                  cuts},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {171--179},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt238},
  doi          = {10.1093/BIOINFORMATICS/BTT238},
  timestamp    = {Wed, 17 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AzencottGSKB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaeleL13,
  author       = {Guy Baele and
                  Philippe Lemey},
  title        = {Bayesian evolutionary model testing in the phylogenomics era: matching
                  model complexity with computational efficiency},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {1970--1979},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt340},
  doi          = {10.1093/BIOINFORMATICS/BTT340},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BaeleL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BakerPSJ13,
  author       = {Syed Murtuza Baker and
                  C. Hart Poskar and
                  Falk Schreiber and
                  Bj{\"{o}}rn H. Junker},
  title        = {An improved constraint filtering technique for inferring hidden states
                  and parameters of a biological model},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {1052--1059},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt097},
  doi          = {10.1093/BIOINFORMATICS/BTT097},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BakerPSJ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BalzerMGJ13,
  author       = {Susanne Balzer and
                  Ketil Malde and
                  Markus A. Grohme and
                  Inge Jonassen},
  title        = {Filtering duplicate reads from 454 pyrosequencing data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {7},
  pages        = {830--836},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt047},
  doi          = {10.1093/BIOINFORMATICS/BTT047},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BalzerMGJ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BansalBHGS13,
  author       = {Mukul S. Bansal and
                  Guy Banay and
                  Timothy J. Harlow and
                  J. Peter Gogarten and
                  Ron Shamir},
  title        = {Systematic inference of highways of horizontal gene transfer in prokaryotes},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {571--579},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt021},
  doi          = {10.1093/BIOINFORMATICS/BTT021},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BansalBHGS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaoJG13,
  author       = {Ergude Bao and
                  Tao Jiang and
                  Thomas Girke},
  title        = {{BRANCH:} boosting RNA-Seq assemblies with partial or related genomic
                  sequences},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {10},
  pages        = {1250--1259},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt127},
  doi          = {10.1093/BIOINFORMATICS/BTT127},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BaoJG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BarannEKLLKAVSASLSR13,
  author       = {Matthias Barann and
                  Daniela Esser and
                  Ulrich C. Klostermeier and
                  Tuuli Lappalainen and
                  Anne Luzius and
                  Jan W. P. Kuiper and
                  Ole Ammerpohl and
                  Inga Vater and
                  Reiner Siebert and
                  Vyacheslav Amstislavskiy and
                  Ralf Sudbrak and
                  Hans Lehrach and
                  Stefan Schreiber and
                  Philip Rosenstiel},
  title        = {Janus - a comprehensive tool investigating the two faces of transcription},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1600--1606},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt185},
  doi          = {10.1093/BIOINFORMATICS/BTT185},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BarannEKLLKAVSASLSR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BardetSBKZS13,
  author       = {Ana{\"{\i}}s F. Bardet and
                  Jonas Steinmann and
                  Sangeeta Bafna and
                  Juergen A. Knoblich and
                  Julia Zeitlinger and
                  Alexander Stark},
  title        = {Identification of transcription factor binding sites from ChIP-seq
                  data at high resolution},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2705--2713},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt470},
  doi          = {10.1093/BIOINFORMATICS/BTT470},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BardetSBKZS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BarenboimM13,
  author       = {Maxim Barenboim and
                  Thomas Manke},
  title        = {ChroMoS: an integrated web tool for {SNP} classification, prioritization
                  and functional interpretation},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2197--2198},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt356},
  doi          = {10.1093/BIOINFORMATICS/BTT356},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BarenboimM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BartenhagenD13,
  author       = {Christoph Bartenhagen and
                  Martin Dugas},
  title        = {RSVSim: an R/Bioconductor package for the simulation of structural
                  variations},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1679--1681},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt198},
  doi          = {10.1093/BIOINFORMATICS/BTT198},
  timestamp    = {Mon, 01 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BartenhagenD13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BayzidW13,
  author       = {Md. Shamsuzzoha Bayzid and
                  Tandy J. Warnow},
  title        = {Naive binning improves phylogenomic analyses},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2277--2284},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt394},
  doi          = {10.1093/BIOINFORMATICS/BTT394},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BayzidW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeckerYHH13,
  author       = {Jeremie Becker and
                  Christopher Yau and
                  John M. Hancock and
                  Christopher C. Holmes},
  title        = {NucleoFinder: a statistical approach for the detection of nucleosome
                  positions},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {711--716},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts719},
  doi          = {10.1093/BIOINFORMATICS/BTS719},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BeckerYHH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BehrKZSDR13,
  author       = {Jonas Behr and
                  Andr{\'{e}} Kahles and
                  Yi Zhong and
                  Vipin T. Sreedharan and
                  Philipp Drewe and
                  Gunnar R{\"{a}}tsch},
  title        = {{MITIE:} Simultaneous RNA-Seq-based transcript identification and
                  quantification in multiple samples},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2529--2538},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt442},
  doi          = {10.1093/BIOINFORMATICS/BTT442},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BehrKZSDR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BelinkyBSZRNDSRMSL13,
  author       = {Frida Belinky and
                  Iris Bahir and
                  Gil Stelzer and
                  Shahar Zimmerman and
                  Naomi Rosen and
                  Noam Nativ and
                  Irina Dalah and
                  Tsippi Iny Stein and
                  Noa Rappaport and
                  Toutai Mituyama and
                  Marilyn Safran and
                  Doron Lancet},
  title        = {Non-redundant compendium of human ncRNA genes in GeneCards},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {255--261},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts676},
  doi          = {10.1093/BIOINFORMATICS/BTS676},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BelinkyBSZRNDSRMSL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeltrameBFC13,
  author       = {Luca Beltrame and
                  Luca Bianco and
                  Paolo Fontana and
                  Duccio Cavalieri},
  title        = {Pathway Processor 2.0: a web resource for pathway-based analysis of
                  high-throughput data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1825--1826},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt292},
  doi          = {10.1093/BIOINFORMATICS/BTT292},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BeltrameBFC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Ben-Tal13,
  author       = {Nir Ben{-}Tal},
  title        = {Editorial},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1--2},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt282},
  doi          = {10.1093/BIOINFORMATICS/BTT282},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Ben-Tal13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BergeyWA13,
  author       = {Christina M. Bergey and
                  Andrew M. Watkins and
                  Paramjit S. Arora},
  title        = {HippDB: a database of readily targeted helical protein-protein interactions},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2806--2807},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt483},
  doi          = {10.1093/BIOINFORMATICS/BTT483},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BergeyWA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BilginKLCP13,
  author       = {Cemal {\c{C}}agatay Bilgin and
                  Sun Kim and
                  Elle Leung and
                  Hang Chang and
                  Bahram Parvin},
  title        = {Integrated profiling of three dimensional cell culture models and
                  3D microscopy},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {3087--3093},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt535},
  doi          = {10.1093/BIOINFORMATICS/BTT535},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BilginKLCP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BindeaGM13,
  author       = {Gabriela Bindea and
                  J{\'{e}}r{\^{o}}me Galon and
                  Bernhard Mlecnik},
  title        = {CluePedia Cytoscape plugin: pathway insights using integrated experimental
                  and \emph{in silico} data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {661--663},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt019},
  doi          = {10.1093/BIOINFORMATICS/BTT019},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BindeaGM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BirolRJPCTYKBVKPMZMJYRBBRMBJ13,
  author       = {Inan{\c{c}} Birol and
                  Anthony Raymond and
                  Shaun D. Jackman and
                  Stephen Pleasance and
                  Robin Coope and
                  Greg A. Taylor and
                  Macaire Man Saint Yuen and
                  Christopher I. Keeling and
                  Dana Brand and
                  Benjamin P. Vandervalk and
                  Heather Kirk and
                  Pawan Pandoh and
                  Richard A. Moore and
                  Yongjun Zhao and
                  Andrew J. Mungall and
                  Barry Jaquish and
                  Alvin Yanchuk and
                  Carol Ritland and
                  Brian Boyle and
                  Jean Bousquet and
                  Kermit Ritland and
                  John MacKay and
                  J{\"{o}}rg Bohlmann and
                  Steven J. M. Jones},
  title        = {Assembling the 20 Gb white spruce (\emph{Picea glauca}) genome from
                  whole-genome shotgun sequencing data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {12},
  pages        = {1492--1497},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt178},
  doi          = {10.1093/BIOINFORMATICS/BTT178},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BirolRJPCTYKBVKPMZMJYRBBRMBJ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BlanchardMVXGBSFFB13,
  author       = {Alexandre P. Blanchard and
                  Graeme S. V. McDowell and
                  Nico Valenzuela and
                  Hongbin Xu and
                  Sarah Gelbard and
                  Martin Bertrand and
                  Gary W. Slater and
                  Daniel Figeys and
                  Stephen Fai and
                  Steffany A. L. Bennett},
  title        = {Visualization and Phospholipid Identification (VaLID): online integrated
                  search engine capable of identifying and visualizing glycerophospholipids
                  with given mass},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {284--285},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts662},
  doi          = {10.1093/BIOINFORMATICS/BTS662},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BlanchardMVXGBSFFB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BonnevilleJ13,
  author       = {Russell Bonneville and
                  Victor X. Jin},
  title        = {A hidden Markov model to identify combinatorial epigenetic regulation
                  patterns for estrogen receptor {\(\alpha\)} target genes},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {22--28},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts639},
  doi          = {10.1093/BIOINFORMATICS/BTS639},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BonnevilleJ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BonzanniGFSKMHXG13,
  author       = {Nicola Bonzanni and
                  Abhishek Garg and
                  K. Anton Feenstra and
                  Judith Sch{\"{u}}tte and
                  Sarah Kinston and
                  Diego Miranda{-}Saavedra and
                  Jaap Heringa and
                  Ioannis Xenarios and
                  Berthold G{\"{o}}ttgens},
  title        = {Hard-wired heterogeneity in blood stem cells revealed using a dynamic
                  regulatory network model},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {80--88},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt243},
  doi          = {10.1093/BIOINFORMATICS/BTT243},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BonzanniGFSKMHXG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BootkrajangK13,
  author       = {Jakramate Bootkrajang and
                  Ata Kab{\'{a}}n},
  title        = {Classification of mislabelled microarrays using robust sparse logistic
                  regression},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {7},
  pages        = {870--877},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt078},
  doi          = {10.1093/BIOINFORMATICS/BTT078},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BootkrajangK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BorgesPNDNLBFBSC13,
  author       = {Diogo B. Lima and
                  Yasset P{\'{e}}rez{-}Riverol and
                  Fabio C. S. Nogueira and
                  Gilberto B. Domont and
                  Jesus Noda and
                  Felipe da Veiga Leprevost and
                  Vladimir Besada and
                  Felipe M. G. Fran{\c{c}}a and
                  Valmir Carneiro Barbosa and
                  Aniel S{\'{a}}nchez and
                  Paulo C. Carvalho},
  title        = {Effectively addressing complex proteomic search spaces with peptide
                  spectrum matching},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {10},
  pages        = {1343--1344},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt106},
  doi          = {10.1093/BIOINFORMATICS/BTT106},
  timestamp    = {Tue, 18 May 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BorgesPNDNLBFBSC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BottomlyWTELDM13,
  author       = {Daniel Bottomly and
                  Beth Wilmot and
                  Jeffrey W. Tyner and
                  Christopher A. Eide and
                  Marc M. Loriaux and
                  Brian J. Druker and
                  Shannon K. McWeeney},
  title        = {HitWalker: variant prioritization for personalized functional cancer
                  genomics},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {509--510},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt003},
  doi          = {10.1093/BIOINFORMATICS/BTT003},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BottomlyWTELDM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Boulesteix13,
  author       = {Anne{-}Laure Boulesteix},
  title        = {On representative and illustrative comparisons with real data in bioinformatics:
                  response to the letter to the editor by Smith \emph{et al.}},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2664--2666},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt458},
  doi          = {10.1093/BIOINFORMATICS/BTT458},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Boulesteix13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BreeseL13,
  author       = {Marcus R. Breese and
                  Yunlong Liu},
  title        = {NGSUtils: a software suite for analyzing and manipulating next-generation
                  sequencing datasets},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {494--496},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts731},
  doi          = {10.1093/BIOINFORMATICS/BTS731},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BreeseL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrownBHBMO13,
  author       = {Paul Brown and
                  Laura Baxter and
                  Richard Hickman and
                  Jim Beynon and
                  Jonathan D. Moore and
                  Sascha Ott},
  title        = {MEME-LaB: motif analysis in clusters},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1696--1697},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt248},
  doi          = {10.1093/BIOINFORMATICS/BTT248},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BrownBHBMO13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BurkoffVW13,
  author       = {Nikolas S. Burkoff and
                  Csilla V{\'{a}}rnai and
                  David L. Wild},
  title        = {Predicting protein {\(\beta\)}-sheet contacts using a maximum entropy-based
                  correlated mutation measure},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {580--587},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt005},
  doi          = {10.1093/BIOINFORMATICS/BTT005},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BurkoffVW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BusbySMGM13,
  author       = {Michele A. Busby and
                  Chip Stewart and
                  Chase A. Miller and
                  Krzysztof R. Grzeda and
                  Gabor T. Marth},
  title        = {Scotty: a web tool for designing RNA-Seq experiments to measure differential
                  gene expression},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {656--657},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt015},
  doi          = {10.1093/BIOINFORMATICS/BTT015},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BusbySMGM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BusettoHKSDOSB13,
  author       = {Alberto Giovanni Busetto and
                  Alain Hauser and
                  Gabriel Krummenacher and
                  Mikael Sunn{\aa}ker and
                  Sotiris Dimopoulos and
                  Cheng Soon Ong and
                  J{\"{o}}rg Stelling and
                  Joachim M. Buhmann},
  title        = {Near-optimal experimental design for model selection in systems biology},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2625--2632},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt436},
  doi          = {10.1093/BIOINFORMATICS/BTT436},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BusettoHKSDOSB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BuskeBMB13,
  author       = {Fabian A. Buske and
                  Denis C. Bauer and
                  John S. Mattick and
                  Timothy L. Bailey},
  title        = {Triplex-Inspector: an analysis tool for triplex-mediated targeting
                  of genomic loci},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {15},
  pages        = {1895--1897},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt315},
  doi          = {10.1093/BIOINFORMATICS/BTT315},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BuskeBMB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BuskeMMRB13,
  author       = {Orion J. Buske and
                  AshokKumar Manickaraj and
                  Seema Mital and
                  Peter N. Ray and
                  Michael Brudno},
  title        = {Identification of deleterious synonymous variants in human genomes},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {15},
  pages        = {1843--1850},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt308},
  doi          = {10.1093/BIOINFORMATICS/BTT308},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BuskeMMRB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ButlerLHD13,
  author       = {Jenna L. Butler and
                  Marjorie Elizabeth Osborne Locke and
                  Kathleen A. Hill and
                  Mark Daley},
  title        = {{HD-CNV:} hotspot detector for copy number variants},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {262--263},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts650},
  doi          = {10.1093/BIOINFORMATICS/BTS650},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ButlerLHD13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CamiloBAFCML13,
  author       = {Esther Camilo and
                  Luiz A. Bovolenta and
                  Marcio Luis Acencio and
                  Jos{\'{e}} L. Rybarczyk Filho and
                  Mauro A. A. Castro and
                  Jos{\'{e}} C. F. Moreira and
                  Ney Lemke},
  title        = {{GALANT:} a Cytoscape plugin for visualizing data as functional landscapes
                  projected onto biological networks},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2505--2506},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt377},
  doi          = {10.1093/BIOINFORMATICS/BTT377},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/CamiloBAFCML13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CampagnaTFVV13,
  author       = {Davide Campagna and
                  Andrea Telatin and
                  Claudio Forcato and
                  Nicola Vitulo and
                  Giorgio Valle},
  title        = {PASS-bis: a bisulfite aligner suitable for whole methylome analysis
                  of Illumina and SOLiD reads},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {268--270},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts675},
  doi          = {10.1093/BIOINFORMATICS/BTS675},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/CampagnaTFVV13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CannistraciAR13,
  author       = {Carlo Vittorio Cannistraci and
                  Gregorio Alanis{-}Lobato and
                  Timothy Ravasi},
  title        = {Minimum curvilinearity to enhance topological prediction of protein
                  interactions by network embedding},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {199--209},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt208},
  doi          = {10.1093/BIOINFORMATICS/BTT208},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/CannistraciAR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaoXHL13,
  author       = {Dong{-}Sheng Cao and
                  Qing{-}Song Xu and
                  Qian{-}Nan Hu and
                  Yi{-}Zeng Liang},
  title        = {ChemoPy: freely available python package for computational biology
                  and chemoinformatics},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {1092--1094},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt105},
  doi          = {10.1093/BIOINFORMATICS/BTT105},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/CaoXHL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaoXL13,
  author       = {Dong{-}Sheng Cao and
                  Qing{-}Song Xu and
                  Yi{-}Zeng Liang},
  title        = {propy: a tool to generate various modes of Chou's PseAAC},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {7},
  pages        = {960--962},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt072},
  doi          = {10.1093/BIOINFORMATICS/BTT072},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/CaoXL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaoZ13,
  author       = {Xiaoyi Cao and
                  Sheng Zhong},
  title        = {Enabling interspecies epigenomic comparison with CEpBrowser},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1223--1225},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt114},
  doi          = {10.1093/BIOINFORMATICS/BTT114},
  timestamp    = {Wed, 29 Dec 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/CaoZ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Capella-GutierrezG13,
  author       = {Salvador Capella{-}Guti{\'{e}}rrez and
                  Toni Gabald{\'{o}}n},
  title        = {Measuring guide-tree dependency of inferred gaps in progressive aligners},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {1011--1017},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt095},
  doi          = {10.1093/BIOINFORMATICS/BTT095},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Capella-GutierrezG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChangB13,
  author       = {Ivan Chang and
                  Pierre Baldi},
  title        = {A unifying kinetic framework for modeling oxidoreductase-catalyzed
                  reactions},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {10},
  pages        = {1299--1307},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt140},
  doi          = {10.1093/BIOINFORMATICS/BTT140},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChangB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChaudharySLSC13,
  author       = {Safee Ullah Chaudhary and
                  Sung{-}Young Shin and
                  Daewon Lee and
                  Je{-}Hoon Song and
                  Kwang{-}Hyun Cho},
  title        = {{ELECANS} - an integrated model development environment for multiscale
                  cancer systems biology},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {7},
  pages        = {957--959},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt063},
  doi          = {10.1093/BIOINFORMATICS/BTT063},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChaudharySLSC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChavesP13,
  author       = {Rui C. Chaves and
                  Jean{-}Luc Pellequer},
  title        = {DockAFM: benchmarking protein structures by docking under {AFM} topographs},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3230--3231},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt561},
  doi          = {10.1093/BIOINFORMATICS/BTT561},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChavesP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChawlaTTLK13,
  author       = {Konika Chawla and
                  Sushil Tripathi and
                  Liv Thommesen and
                  Astrid L{\ae}greid and
                  Martin Kuiper},
  title        = {TFcheckpoint: a curated compendium of specific DNA-binding {RNA} polymerase
                  {II} transcription factors},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2519--2520},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt432},
  doi          = {10.1093/BIOINFORMATICS/BTT432},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChawlaTTLK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenCCW13,
  author       = {Gary K. Chen and
                  Xiao Chang and
                  Christina Curtis and
                  Kai Wang},
  title        = {Precise inference of copy number alterations in tumor samples from
                  {SNP} arrays},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {2964--2970},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt521},
  doi          = {10.1093/BIOINFORMATICS/BTT521},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChenCCW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenCH13,
  author       = {Gwo{-}Liang Chen and
                  Yun{-}Juan Chang and
                  Chun{-}Hway Hsueh},
  title        = {{PRAP:} an \emph{ab initio} software package for automated genome-wide
                  analysis of {DNA} repeats for prokaryotes},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2683--2689},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt482},
  doi          = {10.1093/BIOINFORMATICS/BTT482},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChenCH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenDCA13,
  author       = {Wei{-}Ming Chen and
                  Samuel A. Danziger and
                  Jung{-}Hsien Chiang and
                  John D. Aitchison},
  title        = {PhosphoChain: a novel algorithm to predict kinase and phosphatase
                  networks from high-throughput expression data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2435--2444},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt387},
  doi          = {10.1093/BIOINFORMATICS/BTT387},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChenDCA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenDW13,
  author       = {Zhi{-}Zhong Chen and
                  Fei Deng and
                  Lusheng Wang},
  title        = {Exact algorithms for haplotype assembly from whole-genome sequence
                  data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {1938--1945},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt349},
  doi          = {10.1093/BIOINFORMATICS/BTT349},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChenDW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenHCTS13,
  author       = {Jia{-}Shing Chen and
                  Wei{-}Shiang Hung and
                  Hsiang{-}Han Chan and
                  Shaw{-}Jenq Tsai and
                  Hsiao{-}Fang Sunny Sun},
  title        = {\emph{In silico} identification of oncogenic potential of fyn-related
                  kinase in hepatocellular carcinoma},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {420--427},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts715},
  doi          = {10.1093/BIOINFORMATICS/BTS715},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChenHCTS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenI13,
  author       = {Xi Chen and
                  Hemant Ishwaran},
  title        = {Pathway hunting by random survival forests},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {99--105},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts643},
  doi          = {10.1093/BIOINFORMATICS/BTS643},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChenI13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenLHSWC13,
  author       = {Chuming Chen and
                  Zhiwen Li and
                  Hongzhan Huang and
                  Baris E. Suzek and
                  Cathy H. Wu},
  title        = {A fast Peptide Match service for UniProt Knowledgebase},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2808--2809},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt484},
  doi          = {10.1093/BIOINFORMATICS/BTT484},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChenLHSWC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenPHHKP13,
  author       = {Chia{-}Yen Chen and
                  Samuela Pollack and
                  David J. Hunter and
                  Joel Hirschhorn and
                  Peter Kraft and
                  Alkes L. Price},
  title        = {Improved ancestry inference using weights from external reference
                  panels},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1399--1406},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt144},
  doi          = {10.1093/BIOINFORMATICS/BTT144},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChenPHHKP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenQSSHL13,
  author       = {Xiang Chen and
                  Jian{-}Ding Qiu and
                  Shao{-}Ping Shi and
                  Sheng{-}Bao Suo and
                  Shu{-}Yun Huang and
                  Ru{-}Ping Liang},
  title        = {Incorporating key position and amino acid residue features to identify
                  general and species-specific Ubiquitin conjugation sites},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1614--1622},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt196},
  doi          = {10.1093/BIOINFORMATICS/BTT196},
  timestamp    = {Tue, 22 Mar 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChenQSSHL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenSACAOPLLPAZ13,
  author       = {Mengjie Chen and
                  Valentina Svicher and
                  Anna Artese and
                  Giosu{\`{e}} Costa and
                  Claudia Alteri and
                  Francesco Ortuso and
                  Lucia Parrotta and
                  Yang Liu and
                  Chang Liu and
                  Carlo{-}Federico Perno and
                  Stefano Alcaro and
                  Jing Zhang},
  title        = {Detecting and understanding genetic and structural features in {HIV-1}
                  {B} subtype {V3} underlying {HIV-1} co-receptor usage},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {451--460},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt002},
  doi          = {10.1093/BIOINFORMATICS/BTT002},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChenSACAOPLLPAZ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenSZ13,
  author       = {Xiaowei Chen and
                  Frank J. Slack and
                  Hongyu Zhao},
  title        = {Joint analysis of expression profiles from multiple cancers improves
                  the identification of microRNA-gene interactions},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2137--2145},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt341},
  doi          = {10.1093/BIOINFORMATICS/BTT341},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChenSZ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenY13,
  author       = {Xing Chen and
                  Guiying Yan},
  title        = {Novel human lncRNA-disease association inference based on lncRNA expression
                  profiles},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2617--2624},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt426},
  doi          = {10.1093/BIOINFORMATICS/BTT426},
  timestamp    = {Thu, 11 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChenY13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenYTTWS13,
  author       = {Yunxin Chen and
                  Hui Yao and
                  Erika J. Thompson and
                  Nizar M. Tannir and
                  John N. Weinstein and
                  Xiaoping Su},
  title        = {VirusSeq: software to identify viruses and their integration sites
                  using next-generation sequencing of human cancer tissue},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {266--267},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts665},
  doi          = {10.1093/BIOINFORMATICS/BTS665},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChenYTTWS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenZWX13,
  author       = {Min Chen and
                  Miao Zang and
                  Xinlei Wang and
                  Guanghua Xiao},
  title        = {A powerful Bayesian meta-analysis method to integrate multiple gene
                  set enrichment studies},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {7},
  pages        = {862--869},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt068},
  doi          = {10.1093/BIOINFORMATICS/BTT068},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChenZWX13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChevenetJPOG13,
  author       = {Fran{\c{c}}ois Chevenet and
                  Matthieu Jung and
                  Martine Peeters and
                  Tulio de Oliveira and
                  Olivier Gascuel},
  title        = {Searching for virus phylotypes},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {561--570},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt010},
  doi          = {10.1093/BIOINFORMATICS/BTT010},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChevenetJPOG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChindelevitchMLB13,
  author       = {Leonid Chindelevitch and
                  Cheng{-}Yu Ma and
                  Chung{-}Shou Liao and
                  Bonnie Berger},
  title        = {Optimizing a global alignment of protein interaction networks},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2765--2773},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt486},
  doi          = {10.1093/BIOINFORMATICS/BTT486},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChindelevitchMLB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChoiFNGQ13,
  author       = {Hyungwon Choi and
                  Damian Fermin and
                  Alexey I. Nesvizhskii and
                  Debashis Ghosh and
                  Zhaohui S. Qin},
  title        = {Sparsely correlated hidden Markov models with application to genome-wide
                  location studies},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {533--541},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt012},
  doi          = {10.1093/BIOINFORMATICS/BTT012},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChoiFNGQ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChokkathukalamJCABB13,
  author       = {Achuthanunni Chokkathukalam and
                  Andris Jankevics and
                  Darren J. Creek and
                  Fiona Achcar and
                  Michael P. Barrett and
                  Rainer Breitling},
  title        = {mzMatch-ISO: an {R} tool for the annotation and relative quantification
                  of isotope-labelled mass spectrometry data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {281--283},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts674},
  doi          = {10.1093/BIOINFORMATICS/BTS674},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChokkathukalamJCABB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChowdhurySHRSS13,
  author       = {Salim Akhter Chowdhury and
                  Stanley Shackney and
                  Kerstin Heselmeyer{-}Haddad and
                  Thomas Ried and
                  Alejandro A. Sch{\"{a}}ffer and
                  Russell Schwartz},
  title        = {Phylogenetic analysis of multiprobe fluorescence \emph{in situ} hybridization
                  data from tumor cell populations},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {189--198},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt205},
  doi          = {10.1093/BIOINFORMATICS/BTT205},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChowdhurySHRSS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChristieTB13,
  author       = {Mark R. Christie and
                  Jacob A. Tennessen and
                  Michael S. Blouin},
  title        = {Bayesian parentage analysis with systematic accountability of genotyping
                  error, missing data and false matching},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {725--732},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt039},
  doi          = {10.1093/BIOINFORMATICS/BTT039},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChristieTB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChuHCYTLLLCTK13,
  author       = {Hsueh{-}Ting Chu and
                  William W. L. Hsiao and
                  Jen{-}Chih Chen and
                  Tze{-}Jung Yeh and
                  Mong{-}Hsun Tsai and
                  Han Lin and
                  Yen{-}Wenn Liu and
                  Sheng{-}An Lee and
                  Chaur{-}Chin Chen and
                  Theresa Tsao and
                  Cheng{-}Yan Kao},
  title        = {EBARDenovo: highly accurate \emph{de novo} assembly of RNA-Seq with
                  efficient chimera-detection},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {1004--1010},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt092},
  doi          = {10.1093/BIOINFORMATICS/BTT092},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChuHCYTLLLCTK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChungEF13,
  author       = {Clement Chung and
                  Andrew Emili and
                  Brendan J. Frey},
  title        = {Non-parametric Bayesian approach to post-translational modification
                  refinement of predictions from tandem mass spectrometry},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {7},
  pages        = {821--829},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt056},
  doi          = {10.1093/BIOINFORMATICS/BTT056},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChungEF13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ClarkEFW13,
  author       = {Scott C. Clark and
                  Rob Egan and
                  Peter I. Frazier and
                  Zhong Wang},
  title        = {{ALE:} a generic assembly likelihood evaluation framework for assessing
                  the accuracy of genome and metagenome assemblies},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {435--443},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts723},
  doi          = {10.1093/BIOINFORMATICS/BTS723},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ClarkEFW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ClarkR13,
  author       = {Wyatt T. Clark and
                  Predrag Radivojac},
  title        = {Information-theoretic evaluation of predicted ontological annotations},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {53--61},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt228},
  doi          = {10.1093/BIOINFORMATICS/BTT228},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ClarkR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CoelhoKNOGFSBJM13,
  author       = {Lu{\'{\i}}s Pedro Coelho and
                  Joshua D. Kangas and
                  Armaghan W. Naik and
                  Elvira Osuna{-}Highley and
                  Estelle Glory{-}Afshar and
                  Margaret Fuhrman and
                  Ramanuja Simha and
                  Peter B. Berget and
                  Jonathan W. Jarvik and
                  Robert F. Murphy},
  title        = {Determining the subcellular location of new proteins from microscope
                  images using local features},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2343--2349},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt392},
  doi          = {10.1093/BIOINFORMATICS/BTT392},
  timestamp    = {Wed, 12 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/CoelhoKNOGFSBJM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CokelaerPHSS13,
  author       = {Thomas Cokelaer and
                  Dennis Pultz and
                  Lea M. Harder and
                  Jordi Serra{-}Musach and
                  Julio Saez{-}Rodriguez},
  title        = {BioServices: a common Python package to access biological Web Services
                  programmatically},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3241--3242},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt547},
  doi          = {10.1093/BIOINFORMATICS/BTT547},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/CokelaerPHSS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CostaMLGR13,
  author       = {Eduardo P. Costa and
                  Gerben Menschaert and
                  Walter Luyten and
                  Kurt De Grave and
                  Jan Ramon},
  title        = {{PIUS:} peptide identification by unbiased search},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {15},
  pages        = {1913--1914},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt298},
  doi          = {10.1093/BIOINFORMATICS/BTT298},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/CostaMLGR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Cronkite-RatcliffP13,
  author       = {Bryce W. Cronkite{-}Ratcliff and
                  Vijay Pande},
  title        = {MSMExplorer: visualizing Markov state models for biomolecule folding
                  simulations},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {7},
  pages        = {950--952},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt051},
  doi          = {10.1093/BIOINFORMATICS/BTT051},
  timestamp    = {Fri, 22 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Cronkite-RatcliffP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CrosetOR13,
  author       = {Samuel Croset and
                  John P. Overington and
                  Dietrich Rebholz{-}Schuhmann},
  title        = {Brain: biomedical knowledge manipulation},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1238--1239},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt109},
  doi          = {10.1093/BIOINFORMATICS/BTT109},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/CrosetOR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CrowellSBLMIPAS13,
  author       = {Kevin L. Crowell and
                  Gordon W. Slysz and
                  Erin S. Baker and
                  Brian L. LaMarche and
                  Matthew E. Monroe and
                  Yehia M. Ibrahim and
                  Samuel H. Payne and
                  Gordon A. Anderson and
                  Richard D. Smith},
  title        = {{LC-IMS-MS} Feature Finder: detecting multidimensional liquid chromatography,
                  ion mobility and mass spectrometry features in complex datasets},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2804--2805},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt465},
  doi          = {10.1093/BIOINFORMATICS/BTT465},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/CrowellSBLMIPAS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CurtisPCCM13,
  author       = {Darren S. Curtis and
                  Aaron R. Phillips and
                  Stephen J. Callister and
                  Sean Conlan and
                  Lee Ann McCue},
  title        = {{SPOCS:} software for predicting and visualizing orthology/paralogy
                  relationships among genomes},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2641--2642},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt454},
  doi          = {10.1093/BIOINFORMATICS/BTT454},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/CurtisPCCM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DaiTWXWTZ13,
  author       = {Lin Dai and
                  Ming Tian and
                  Jiayan Wu and
                  Jing{-}Fa Xiao and
                  Xumin Wang and
                  Jeffrey P. Townsend and
                  Zhang Zhang},
  title        = {AuthorReward: increasing community curation in biological knowledge
                  wikis through automated authorship quantification},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1837--1839},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt284},
  doi          = {10.1093/BIOINFORMATICS/BTT284},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DaiTWXWTZ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DandSAS13,
  author       = {Nick Dand and
                  Frauke Sprengel and
                  Volker Ahlers and
                  Thomas Schlitt},
  title        = {BioGranat-IG: a network analysis tool to suggest mechanisms of genetic
                  heterogeneity from exome-sequencing data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {733--741},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt045},
  doi          = {10.1093/BIOINFORMATICS/BTT045},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DandSAS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DanielsGPCBB13,
  author       = {Noah M. Daniels and
                  Andrew Gallant and
                  Jian Peng and
                  Lenore J. Cowen and
                  Michael Baym and
                  Bonnie Berger},
  title        = {Compressive genomics for protein databases},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {283--290},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt214},
  doi          = {10.1093/BIOINFORMATICS/BTT214},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DanielsGPCBB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DanishuddinBKK13,
  author       = {Mohd Danishuddin and
                  Mohd Hassan Baig and
                  Lalima Kaushal and
                  Asad U. Khan},
  title        = {{BLAD:} {A} comprehensive database of widely circulated beta-lactamases},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2515--2516},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt417},
  doi          = {10.1093/BIOINFORMATICS/BTT417},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DanishuddinBKK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeJesusZSRSI13,
  author       = {Michael A. DeJesus and
                  Yanjia J. Zhang and
                  Christopher M. Sassetti and
                  Eric J. Rubin and
                  James C. Sacchettini and
                  Thomas R. Ioerger},
  title        = {Bayesian analysis of gene essentiality based on sequencing of transposon
                  insertion libraries},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {695--703},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt043},
  doi          = {10.1093/BIOINFORMATICS/BTT043},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DeJesusZSRSI13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeckardAHHH13,
  author       = {Anastasia Deckard and
                  Ron C. Anafi and
                  John B. Hogenesch and
                  Steven B. Haase and
                  John Harer},
  title        = {Design and analysis of large-scale biological rhythm studies: a comparison
                  of algorithms for detecting periodic signals in biological data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3174--3180},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt541},
  doi          = {10.1093/BIOINFORMATICS/BTT541},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DeckardAHHH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DegroeveM13,
  author       = {Sven Degroeve and
                  Lennart Martens},
  title        = {MS\({}^{\mbox{2}}\)PIP: a tool for {MS/MS} peak intensity prediction},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3199--3203},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt544},
  doi          = {10.1093/BIOINFORMATICS/BTT544},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DegroeveM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DengMWCZLILM13,
  author       = {Wenjie Deng and
                  Brandon Maust and
                  Dylan H. Westfall and
                  Lennie Chen and
                  Hong Zhao and
                  Brendan B. Larsen and
                  Shyamala Iyer and
                  Yi Liu and
                  James I. Mullins},
  title        = {Indel and Carryforward Correction {(ICC):} a new analysis approach
                  for processing 454 pyrosequencing data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2402--2409},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt434},
  doi          = {10.1093/BIOINFORMATICS/BTT434},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DengMWCZLILM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DentYN13,
  author       = {Jennifer E. Dent and
                  Xinyi Yang and
                  Christine Nardini},
  title        = {SPNConverter: a new link between static and dynamic complex network
                  analysis},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2507--2508},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt421},
  doi          = {10.1093/BIOINFORMATICS/BTT421},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DentYN13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeorowiczDG13,
  author       = {Sebastian Deorowicz and
                  Agnieszka Danek and
                  Szymon Grabowski},
  title        = {Genome compression: a novel approach for large collections},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2572--2578},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt460},
  doi          = {10.1093/BIOINFORMATICS/BTT460},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DeorowiczDG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DesaiSLL13,
  author       = {Dhwani K. Desai and
                  Harald Schunck and
                  Johannes W. L{\"{o}}ser and
                  Julie LaRoche},
  title        = {Fragment recruitment on metabolic pathways: comparative metabolic
                  profiling of metagenomes and metatranscriptomes},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {790--791},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts721},
  doi          = {10.1093/BIOINFORMATICS/BTS721},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DesaiSLL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DinasarapuGMFMSGGS13,
  author       = {Ashok Reddy Dinasarapu and
                  Shakti Gupta and
                  Mano Ram Maurya and
                  Eoin Fahy and
                  Jun Min and
                  Manish Sud and
                  Merril J. Gersten and
                  Christopher K. Glass and
                  Shankar Subramaniam},
  title        = {A combined omics study on activated macrophages - enhanced role of
                  STATs in apoptosis, immunity and lipid metabolism},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2735--2743},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt469},
  doi          = {10.1093/BIOINFORMATICS/BTT469},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DinasarapuGMFMSGGS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DobinDSDZJBCG13,
  author       = {Alexander Dobin and
                  Carrie A. Davis and
                  Felix Schlesinger and
                  Jorg Drenkow and
                  Chris Zaleski and
                  Sonali Jha and
                  Philippe Batut and
                  Mark Chaisson and
                  Thomas R. Gingeras},
  title        = {{STAR:} ultrafast universal RNA-seq aligner},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {15--21},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts635},
  doi          = {10.1093/BIOINFORMATICS/BTS635},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DobinDSDZJBCG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DojerBPW13,
  author       = {Norbert Dojer and
                  Pawel Bednarz and
                  Agnieszka Podsiadlo and
                  Bartek Wilczynski},
  title        = {BNFinder2: Faster Bayesian network learning and Bayesian classification},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {2068--2070},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt323},
  doi          = {10.1093/BIOINFORMATICS/BTT323},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DojerBPW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DongFSWS13,
  author       = {Guang Qiang Dong and
                  Hao Fan and
                  Dina Schneidman{-}Duhovny and
                  Ben M. Webb and
                  Andrej Sali},
  title        = {Optimized atomic statistical potentials: assessment of protein interfaces
                  and loops},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3158--3166},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt560},
  doi          = {10.1093/BIOINFORMATICS/BTT560},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DongFSWS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DonmezB13,
  author       = {Nilgun Donmez and
                  Michael Brudno},
  title        = {{SCARPA:} scaffolding reads with practical algorithms},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {428--434},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts716},
  doi          = {10.1093/BIOINFORMATICS/BTS716},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DonmezB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DouvilleCKNDSCRK13,
  author       = {Christopher Douville and
                  Hannah Carter and
                  Rick Kim and
                  Noushin Niknafs and
                  Mark Diekhans and
                  Peter D. Stenson and
                  David N. Cooper and
                  Michael C. Ryan and
                  Rachel Karchin},
  title        = {{CRAVAT:} cancer-related analysis of variants toolkit},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {647--648},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt017},
  doi          = {10.1093/BIOINFORMATICS/BTT017},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DouvilleCKNDSCRK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DuanLA13,
  author       = {Qing Duan and
                  Eric Yi Liu and
                  Paul L. Auer and
                  Guosheng Zhang and
                  Ethan M. Lange and
                  Goo Jun and
                  Chris Bizon and
                  Shuo Jiao and
                  Steven Buyske and
                  Nora Franceschini and
                  Chris S. Carlson and
                  Li Hsu and
                  Alex P. Reiner and
                  Ulrike Peters and
                  Jeffrey Haessler and
                  Keith Curtis and
                  Christina L. Wassel and
                  Jennifer G. Robinson and
                  Lisa W. Martin and
                  Christopher A. Haiman and
                  Loic Le Marchand and
                  Tara Cox Matise and
                  Lucia A. Hindorff and
                  Dana C. Crawford and
                  Themistocles L. Assimes and
                  Hyun Min Kang and
                  Gerardo Heiss and
                  Rebecca D. Jackson and
                  Charles Kooperberg and
                  James G. Wilson and
                  Gon{\c{c}}alo R. Abecasis and
                  Kari E. North and
                  Deborah A. Nickerson and
                  Leslie A. Lange and
                  Yun Li},
  title        = {Imputation of coding variants in African Americans: better performance
                  using data from the exome sequencing project},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2744--2749},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt477},
  doi          = {10.1093/BIOINFORMATICS/BTT477},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DuanLA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DuanLCML13,
  author       = {Qing Duan and
                  Eric Yi Liu and
                  Damien C. Croteau{-}Chonka and
                  Karen L. Mohlke and
                  Yun Li},
  title        = {A comprehensive {SNP} and indel imputability database},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {528--531},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts724},
  doi          = {10.1093/BIOINFORMATICS/BTS724},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DuanLCML13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DubchakMPSMBZ13,
  author       = {Inna Dubchak and
                  Matthew Munoz and
                  Alexander Poliakov and
                  Nathan Salomonis and
                  Simon Minovitsky and
                  Rolf Bodmer and
                  Alexander C. Zambon},
  title        = {Whole-Genome rVISTA: a tool to determine enrichment of transcription
                  factor binding sites in gene promoters from transcriptomic data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {2059--2061},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt318},
  doi          = {10.1093/BIOINFORMATICS/BTT318},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DubchakMPSMBZ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EinloftANK13,
  author       = {Jens Einloft and
                  J{\"{o}}rg Ackermann and
                  Joachim N{\"{o}}then and
                  Ina Koch},
  title        = {MonaLisa - visualization and analysis of functional modules in biochemical
                  networks},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1469--1470},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt165},
  doi          = {10.1093/BIOINFORMATICS/BTT165},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/EinloftANK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ElsworthJB13,
  author       = {Ben Elsworth and
                  Martin O. Jones and
                  Mark L. Blaxter},
  title        = {Badger - an accessible genome exploration environment},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2788--2789},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt466},
  doi          = {10.1093/BIOINFORMATICS/BTT466},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ElsworthJB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ErhardDZ13,
  author       = {Florian Erhard and
                  Lars D{\"{o}}lken and
                  Ralf Zimmer},
  title        = {RIP-chip enrichment analysis},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {77--83},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts631},
  doi          = {10.1093/BIOINFORMATICS/BTS631},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ErhardDZ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EtheringtonM13,
  author       = {Graham J. Etherington and
                  Daniel MacLean},
  title        = {SVGenes: a library for rendering genomic features in scalable vector
                  graphic format},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {15},
  pages        = {1890--1892},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt294},
  doi          = {10.1093/BIOINFORMATICS/BTT294},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/EtheringtonM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FacchettiIPA13,
  author       = {Giuseppe Facchetti and
                  Giovanni Iacono and
                  Giovanna De Palo and
                  Claudio Altafini},
  title        = {A rate-distortion theory for gene regulatory networks and its application
                  to logic gate consistency},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1166--1173},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt116},
  doi          = {10.1093/BIOINFORMATICS/BTT116},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/FacchettiIPA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FailmezgerPTF13,
  author       = {Henrik Failmezger and
                  Paurush Praveen and
                  Achim Tresch and
                  Holger Fr{\"{o}}hlich},
  title        = {Learning gene network structure from time laps cell imaging in RNAi
                  Knock downs},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {12},
  pages        = {1534--1540},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt179},
  doi          = {10.1093/BIOINFORMATICS/BTT179},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/FailmezgerPTF13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FangLZGWF13,
  author       = {Yaping Fang and
                  Hui{-}Xin Liu and
                  Ning Zhang and
                  Grace L. Guo and
                  Yu{-}Jui Yvonne Wan and
                  Jianwen Fang},
  title        = {{NURBS:} a database of experimental and predicted nuclear receptor
                  binding sites of mouse},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {295--297},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts693},
  doi          = {10.1093/BIOINFORMATICS/BTS693},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/FangLZGWF13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FasoldB13,
  author       = {Mario Fasold and
                  Hans Binder},
  title        = {AffyRNADegradation: control and correction of {RNA} quality effects
                  in GeneChip expression data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {129--131},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts629},
  doi          = {10.1093/BIOINFORMATICS/BTS629},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/FasoldB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FaureC13,
  author       = {Guilhem Faure and
                  Isabelle Callebaut},
  title        = {Identification of hidden relationships from the coupling of Hydrophobic
                  Cluster Analysis and Domain Architecture information},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1726--1733},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt271},
  doi          = {10.1093/BIOINFORMATICS/BTT271},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/FaureC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FechnerPEMBTB13,
  author       = {Nikolas Fechner and
                  George Papadatos and
                  David A. Evans and
                  John Richard Morphy and
                  Suzanne Clare Brewerton and
                  David A. Thorner and
                  Michael J. Bodkin},
  title        = {ChEMBLSpace - a graphical explorer of the chemogenomic space covered
                  by the ChEMBL database},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {523--524},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts711},
  doi          = {10.1093/BIOINFORMATICS/BTS711},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/FechnerPEMBTB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FeliuW13,
  author       = {Elisenda Feliu and
                  Carsten Wiuf},
  title        = {A computational method to preclude multistationarity in networks of
                  interacting species},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2327--2334},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt400},
  doi          = {10.1093/BIOINFORMATICS/BTT400},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/FeliuW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FerreiraHC13,
  author       = {Jo{\~{a}}o D. Ferreira and
                  Janna Hastings and
                  Francisco M. Couto},
  title        = {Exploiting disjointness axioms to improve semantic similarity measures},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2781--2787},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt491},
  doi          = {10.1093/BIOINFORMATICS/BTT491},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/FerreiraHC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FisherPMK13,
  author       = {Ciar{\'{a}}n P. Fisher and
                  Nicholas J. Plant and
                  J. Bernadette Moore and
                  Andrzej M. Kierzek},
  title        = {{QSSPN:} dynamic simulation of molecular interaction networks describing
                  gene regulation, signalling and whole-cell metabolism in human cells},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3181--3190},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt552},
  doi          = {10.1093/BIOINFORMATICS/BTT552},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/FisherPMK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FlassigHSK13,
  author       = {Robert J. Flassig and
                  Sandra Heise and
                  Kai Sundmacher and
                  Steffen Klamt},
  title        = {An effective framework for reconstructing gene regulatory networks
                  from genetical genomics data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {246--254},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts679},
  doi          = {10.1093/BIOINFORMATICS/BTS679},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/FlassigHSK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FoggK13,
  author       = {Christiana N. Fogg and
                  Diane E. Kovats},
  title        = {International Society for Computational Biology Honors Goncalo Abecasis
                  with Top Bioinformatics/Computational Biology Award for 2013},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {12},
  pages        = {1586--1587},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt251},
  doi          = {10.1093/BIOINFORMATICS/BTT251},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/FoggK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FongSYGS13,
  author       = {Youyi Fong and
                  Krisztian Sebestyen and
                  Xuesong Yu and
                  Peter Gilbert and
                  Steve Self},
  title        = {nCal: an {R} package for non-linear calibration},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2653--2654},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt456},
  doi          = {10.1093/BIOINFORMATICS/BTT456},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/FongSYGS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ForouzmandC13,
  author       = {Elmirasadat Forouzmand and
                  Hamidreza Chitsaz},
  title        = {The {RNA} Newton polytope and learnability of energy parameters},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {300--307},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt226},
  doi          = {10.1093/BIOINFORMATICS/BTT226},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ForouzmandC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ForsterFGH13,
  author       = {Samuel C. Forster and
                  Alexander M. Finkel and
                  Jodee A. Gould and
                  Paul J. Hertzog},
  title        = {RNA-eXpress annotates novel transcript features in RNA-seq data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {810--812},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt034},
  doi          = {10.1093/BIOINFORMATICS/BTT034},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ForsterFGH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FresnoF13,
  author       = {Crist{\'{o}}bal Fresno and
                  Elmer Andr{\'{e}}s Fern{\'{a}}ndez},
  title        = {RDAVIDWebService: a versatile \emph{R} interface to {DAVID}},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2810--2811},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt487},
  doi          = {10.1093/BIOINFORMATICS/BTT487},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/FresnoF13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FriedIAKL13,
  author       = {Jake Y. Fried and
                  Martijn P. van Iersel and
                  Mirit I. Aladjem and
                  Kurt W. Kohn and
                  Augustin Luna},
  title        = {PathVisio-Faceted Search: an exploration tool for multi-dimensional
                  navigation of large pathways},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1465--1466},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt146},
  doi          = {10.1093/BIOINFORMATICS/BTT146},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/FriedIAKL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FuJGZBW13,
  author       = {Changhe Fu and
                  Guangxu Jin and
                  Junfeng Gao and
                  Rui Zhu and
                  Efren Ballesteros{-}Villagrana and
                  Stephen T. C. Wong},
  title        = {DrugMap Central: an on-line query and visualization tool to facilitate
                  drug repositioning studies},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1834--1836},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt279},
  doi          = {10.1093/BIOINFORMATICS/BTT279},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/FuJGZBW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FusiLBLS13,
  author       = {Nicol{\'{o}} Fusi and
                  Christoph Lippert and
                  Karsten M. Borgwardt and
                  Neil D. Lawrence and
                  Oliver Stegle},
  title        = {Detecting regulatory gene-environment interactions with unmeasured
                  environmental factors},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1382--1389},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt148},
  doi          = {10.1093/BIOINFORMATICS/BTT148},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/FusiLBLS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GallinaBBB13,
  author       = {Anna Maria Gallina and
                  Paola Bisignano and
                  Maurizio Bergamino and
                  Domenico Bordo},
  title        = {{PLI:} a web-based tool for the comparison of protein-ligand interactions
                  observed on {PDB} structures},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {395--397},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts691},
  doi          = {10.1093/BIOINFORMATICS/BTS691},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GallinaBBB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GambardellaMCCPB13,
  author       = {Gennaro Gambardella and
                  Maria Nicoletta Moretti and
                  Rossella de Cegli and
                  Luca Cardone and
                  Adriano Peron and
                  Diego di Bernardo},
  title        = {Differential network analysis for the identification of condition-specific
                  pathway activity and regulation},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1776--1785},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt290},
  doi          = {10.1093/BIOINFORMATICS/BTT290},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GambardellaMCCPB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GanterBMSP13,
  author       = {Mathias Ganter and
                  Thomas Bernard and
                  S{\'{e}}bastien Moretti and
                  J{\"{o}}rg Stelling and
                  Marco Pagni},
  title        = {MetaNetX.org: a website and repository for accessing, analysing and
                  manipulating metabolic networks},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {815--816},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt036},
  doi          = {10.1093/BIOINFORMATICS/BTT036},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GanterBMSP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaoMRR13,
  author       = {Dadi Gao and
                  Robert Middleton and
                  John E. J. Rasko and
                  William Ritchie},
  title        = {miREval 2.0: a web tool for simple microRNA prediction in genome sequences},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3225--3226},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt545},
  doi          = {10.1093/BIOINFORMATICS/BTT545},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GaoMRR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaoS13,
  author       = {Mu Gao and
                  Jeffrey Skolnick},
  title        = {APoc: large-scale identification of similar protein pockets},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {597--604},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt024},
  doi          = {10.1093/BIOINFORMATICS/BTT024},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GaoS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Garcia-GodoyLDM13,
  author       = {Mar{\'{\i}}a Jes{\'{u}}s Garc{\'{\i}}a{-}Godoy and
                  Esteban L{\'{o}}pez{-}Camacho and
                  Ismael Navas{-}Delgado and
                  Jos{\'{e}} Francisco Aldana Montes},
  title        = {Sharing and executing linked data queries in a collaborative environment},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1663--1670},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt192},
  doi          = {10.1093/BIOINFORMATICS/BTT192},
  timestamp    = {Wed, 15 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Garcia-GodoyLDM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaujouxS13,
  author       = {Renaud Gaujoux and
                  Cathal Seoighe},
  title        = {CellMix: a comprehensive toolbox for gene expression deconvolution},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2211--2212},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt351},
  doi          = {10.1093/BIOINFORMATICS/BTT351},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GaujouxS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GeeleherHEGAS13,
  author       = {Paul Geeleher and
                  Lori Hartnett and
                  Laurance J. Egan and
                  Aaron Golden and
                  Raja Affendi Raja Ali and
                  Cathal Seoighe},
  title        = {Gene-set analysis is severely biased when applied to genome-wide methylation
                  data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {15},
  pages        = {1851--1857},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt311},
  doi          = {10.1093/BIOINFORMATICS/BTT311},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GeeleherHEGAS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GehlenborgNGCP13,
  author       = {Nils Gehlenborg and
                  Michael S. Noble and
                  Gad Getz and
                  Lynda Chin and
                  Peter J. Park},
  title        = {Nozzle: a report generation toolkit for data analysis pipelines},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {1089--1091},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt085},
  doi          = {10.1093/BIOINFORMATICS/BTT085},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GehlenborgNGCP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GfellerMZ13,
  author       = {David Gfeller and
                  Olivier Michielin and
                  Vincent Zoete},
  title        = {Shaping the interaction landscape of bioactive molecules},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {3073--3079},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt540},
  doi          = {10.1093/BIOINFORMATICS/BTT540},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GfellerMZ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GilG13,
  author       = {V{\'{\i}}ctor A. Gil and
                  Victor Guallar},
  title        = {pyRMSD: a Python package for efficient pairwise {RMSD} matrix calculation
                  and handling},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2363--2364},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt402},
  doi          = {10.1093/BIOINFORMATICS/BTT402},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GilG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GillisP13,
  author       = {Jesse A. Gillis and
                  Paul Pavlidis},
  title        = {Assessing identity, redundancy and confounds in Gene Ontology annotations
                  over time},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {476--482},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts727},
  doi          = {10.1093/BIOINFORMATICS/BTS727},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GillisP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GiorgiFL13,
  author       = {Federico M. Giorgi and
                  Cristian Del Fabbro and
                  Francesco Licausi},
  title        = {Comparative study of RNA-seq- and Microarray-derived coexpression
                  networks in \emph{Arabidopsis thaliana}},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {717--724},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt053},
  doi          = {10.1093/BIOINFORMATICS/BTT053},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GiorgiFL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GitterB13,
  author       = {Anthony Gitter and
                  Ziv Bar{-}Joseph},
  title        = {Identifying proteins controlling key disease signaling pathways},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {227--236},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt241},
  doi          = {10.1093/BIOINFORMATICS/BTT241},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GitterB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GiulyKE13,
  author       = {Richard J. Giuly and
                  Keun{-}Young Kim and
                  Mark H. Ellisman},
  title        = {{DP2:} Distributed 3D image segmentation using micro-labor workforce},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {10},
  pages        = {1359--1360},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt154},
  doi          = {10.1093/BIOINFORMATICS/BTT154},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GiulyKE13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GolanM13,
  author       = {David Golan and
                  Paul Medvedev},
  title        = {Using state machines to model the Ion Torrent sequencing process and
                  to improve read error rates},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {344--351},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt212},
  doi          = {10.1093/BIOINFORMATICS/BTT212},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GolanM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GoldbergGSHWZ13,
  author       = {Jonathan M. Goldberg and
                  Allison D. Griggs and
                  Janet L. Smith and
                  Brian J. Haas and
                  Jennifer R. Wortman and
                  Qiandong Zeng},
  title        = {Kinannote, a computer program to identify and classify members of
                  the eukaryotic protein kinase superfamily},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2387--2394},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt419},
  doi          = {10.1093/BIOINFORMATICS/BTT419},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GoldbergGSHWZ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GoldenM13,
  author       = {Michael Golden and
                  Darren Martin},
  title        = {{DOOSS:} a tool for visual analysis of data overlaid on secondary
                  structures},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {271--272},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts667},
  doi          = {10.1093/BIOINFORMATICS/BTS667},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GoldenM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GomezGSVGGMLAdDOVHZPCJ13,
  author       = {John G{\'{o}}mez and
                  Leyla J. Garc{\'{\i}}a and
                  Gustavo A. Salazar and
                  Jose M. Villaveces and
                  Swanand P. Gore and
                  Alexander Garc{\'{\i}}a Castro and
                  Maria Jesus Martin and
                  Guillaume Launay and
                  Rafael Alc{\'{a}}ntara and
                  Noemi del{-}Toro and
                  Marine Dumousseau and
                  Sandra E. Orchard and
                  Sameer Velankar and
                  Henning Hermjakob and
                  Chenggong Zong and
                  Peipei Ping and
                  Manuel Corpas and
                  Rafael C. Jim{\'{e}}nez},
  title        = {BioJS: an open source JavaScript framework for biological data visualization},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {1103--1104},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt100},
  doi          = {10.1093/BIOINFORMATICS/BTT100},
  timestamp    = {Thu, 25 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GomezGSVGGMLAdDOVHZPCJ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GongCLKJGL13,
  author       = {Jiayu Gong and
                  Chaoqian Cai and
                  Xiaofeng Liu and
                  Xin Ku and
                  Hualiang Jiang and
                  Daqi Gao and
                  Honglin Li},
  title        = {ChemMapper: a versatile web server for exploring pharmacology and
                  chemical structure association based on molecular 3D similarity method},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1827--1829},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt270},
  doi          = {10.1093/BIOINFORMATICS/BTT270},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GongCLKJGL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GongLCDGLQ13,
  author       = {Jiayu Gong and
                  Xiaofeng Liu and
                  Xianwen Cao and
                  Yanyan Diao and
                  Daqi Gao and
                  Honglin Li and
                  Xuhong Qian},
  title        = {{PTID:} an integrated web resource and computational tool for agrochemical
                  discovery},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {292--294},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts651},
  doi          = {10.1093/BIOINFORMATICS/BTS651},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GongLCDGLQ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GongS13,
  author       = {Ting Gong and
                  Joseph D. Szustakowski},
  title        = {DeconRNASeq: a statistical framework for deconvolution of heterogeneous
                  tissue samples based on mRNA-Seq data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {1083--1085},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt090},
  doi          = {10.1093/BIOINFORMATICS/BTT090},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GongS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GontarzBW13,
  author       = {Paul M. Gontarz and
                  Jennifer Berger and
                  Chung F. Wong},
  title        = {SRmapper: a fast and sensitive genome-hashing alignment tool},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {316--321},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts712},
  doi          = {10.1093/BIOINFORMATICS/BTS712},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GontarzBW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GonzalezLW13,
  author       = {Alvaro J. Gonz{\'{a}}lez and
                  Li Liao and
                  Cathy H. Wu},
  title        = {Prediction of contact matrix for protein-protein interaction},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {1018--1025},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt076},
  doi          = {10.1093/BIOINFORMATICS/BTT076},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GonzalezLW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GoodS13,
  author       = {Benjamin M. Good and
                  Andrew I. Su},
  title        = {Crowdsourcing for bioinformatics},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {1925--1933},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt333},
  doi          = {10.1093/BIOINFORMATICS/BTT333},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GoodS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GordonG13,
  author       = {David Gordon and
                  Phil Green},
  title        = {\emph{Consed: } a graphical editor for next-generation sequencing},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2936--2937},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt515},
  doi          = {10.1093/BIOINFORMATICS/BTT515},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GordonG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrauBP13,
  author       = {Jan Grau and
                  Jens Boch and
                  Stefan Posch},
  title        = {TALENoffer: genome-wide {TALEN} off-target prediction},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2931--2932},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt501},
  doi          = {10.1093/BIOINFORMATICS/BTT501},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GrauBP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GreenfieldHB13,
  author       = {Alex Greenfield and
                  Christoph Hafemeister and
                  Richard Bonneau},
  title        = {Robust data-driven incorporation of prior knowledge into the inference
                  of dynamic regulatory networks},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {1060--1067},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt099},
  doi          = {10.1093/BIOINFORMATICS/BTT099},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GreenfieldHB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GroveHBVK13,
  author       = {Laurie E. Grove and
                  David R. Hall and
                  Dmitri Beglov and
                  Sandor Vajda and
                  Dima Kozakov},
  title        = {FTFlex: accounting for binding site flexibility to improve fragment-based
                  identification of druggable hot spots},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1218--1219},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt102},
  doi          = {10.1093/BIOINFORMATICS/BTT102},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GroveHBVK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuW13,
  author       = {Zuguang Gu and
                  Jin Wang},
  title        = {CePa: an {R} package for finding significant pathways weighted by
                  multiple network centralities},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {658--660},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt008},
  doi          = {10.1093/BIOINFORMATICS/BTT008},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GuW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GunawardanaN13,
  author       = {Yawwani Gunawardana and
                  Mahesan Niranjan},
  title        = {Bridging the gap between transcriptome and proteome measurements identifies
                  post-translationally regulated genes},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {3060--3066},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt537},
  doi          = {10.1093/BIOINFORMATICS/BTT537},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GunawardanaN13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuoLLSS13,
  author       = {Yan Guo and
                  Jiang Li and
                  Chung{-}I Li and
                  Yu Shyr and
                  David C. Samuels},
  title        = {MitoSeek: extracting mitochondria information and performing high-throughput
                  mitochondria sequencing analysis},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1210--1211},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt118},
  doi          = {10.1093/BIOINFORMATICS/BTT118},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GuoLLSS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuoSSK13,
  author       = {Yufan Guo and
                  Ilona Silins and
                  Ulla Stenius and
                  Anna Korhonen},
  title        = {Active learning-based information structure analysis of full scientific
                  articles and two applications for biomedical literature review},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1440--1447},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt163},
  doi          = {10.1093/BIOINFORMATICS/BTT163},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GuoSSK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GurevichSVT13,
  author       = {Alexey A. Gurevich and
                  Vladislav Saveliev and
                  Nikolay Vyahhi and
                  Glenn Tesler},
  title        = {{QUAST:} quality assessment tool for genome assemblies},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {1072--1075},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt086},
  doi          = {10.1093/BIOINFORMATICS/BTT086},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GurevichSVT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuziolowskiVETCSS13,
  author       = {Carito Guziolowski and
                  Santiago Videla and
                  Federica Eduati and
                  Sven Thiele and
                  Thomas Cokelaer and
                  Anne Siegel and
                  Julio Saez{-}Rodriguez},
  title        = {Exhaustively characterizing feasible logic models of a signaling network
                  using Answer Set Programming},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2320--2326},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt393},
  doi          = {10.1093/BIOINFORMATICS/BTT393},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GuziolowskiVETCSS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuzmanVRPFUR13,
  author       = {Francisco M. Ortu{\~{n}}o Guzman and
                  Olga Valenzuela and
                  Fernando Rojas and
                  H{\'{e}}ctor Pomares and
                  Javier Perez{-}Florido and
                  Jos{\'{e}} M. Urquiza and
                  Ignacio Rojas},
  title        = {Optimizing multiple sequence alignments using a genetic algorithm
                  based on three objectives: structural information, non-gaps percentage
                  and totally conserved columns},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2112--2121},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt360},
  doi          = {10.1093/BIOINFORMATICS/BTT360},
  timestamp    = {Sun, 17 Dec 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GuzmanVRPFUR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GyeneseiSHW13,
  author       = {Attila Gyenesei and
                  Colin A. M. Semple and
                  Chris S. Haley and
                  Wenhua Wei},
  title        = {Corrigendum of 'High throughput analysis of epistasis in genome-wide
                  association studies with BiForce'},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2667--2668},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt444},
  doi          = {10.1093/BIOINFORMATICS/BTT444},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GyeneseiSHW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GypasTH13,
  author       = {Foivos Gypas and
                  Georgios N. Tsaousis and
                  Stavros J. Hamodrakas},
  title        = {mpMoRFsDB: a database of molecular recognition features in membrane
                  proteins},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2517--2518},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt427},
  doi          = {10.1093/BIOINFORMATICS/BTT427},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GypasTH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaHL13,
  author       = {Misook Ha and
                  Soondo Hong and
                  Wen{-}Hsiung Li},
  title        = {Predicting the probability of H3K4me3 occupation at a base pair from
                  the genome sequence context},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1199--1205},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt126},
  doi          = {10.1093/BIOINFORMATICS/BTT126},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HaHL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HafezNMZO13,
  author       = {Dina Hafez and
                  Ting Ni and
                  Sayan Mukherjee and
                  Jun Zhu and
                  Uwe Ohler},
  title        = {Genome-wide identification and predictive modeling of tissue-specific
                  alternative polyadenylation},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {108--116},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt233},
  doi          = {10.1093/BIOINFORMATICS/BTT233},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HafezNMZO13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Hahn13,
  author       = {Yoonsoo Hahn},
  title        = {Evidence for the dissemination of cryptic non-coding RNAs transcribed
                  from intronic and intergenic segments by retroposition},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1593--1599},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt258},
  doi          = {10.1093/BIOINFORMATICS/BTT258},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Hahn13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HakkinenMMFR13,
  author       = {Antti H{\"{a}}kkinen and
                  Anantha Barathi Muthukrishnan and
                  Andr{\'{e}} Mora and
                  Jos{\'{e}} Manuel Fonseca and
                  Andre S. Ribeiro},
  title        = {CellAging: a tool to study segregation and partitioning in division
                  in cell lineages of \emph{Escherichia coli}},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1708--1709},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt194},
  doi          = {10.1093/BIOINFORMATICS/BTT194},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HakkinenMMFR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaldHS13,
  author       = {Bj{\o}rn Olav Hald and
                  Morten Garkier Hendriksen and
                  Preben Graae S{\o}rensen},
  title        = {Programming strategy for efficient modeling of dynamics in a population
                  of heterogeneous cells},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {10},
  pages        = {1292--1298},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt132},
  doi          = {10.1093/BIOINFORMATICS/BTT132},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HaldHS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HansenGMSM13,
  author       = {Nancy F. Hansen and
                  Jared J. Gartner and
                  Lan Mei and
                  Yardena Samuels and
                  James C. Mullikin},
  title        = {Shimmer: detection of genetic alterations in tumors using next-generation
                  sequence data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {12},
  pages        = {1498--1503},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt183},
  doi          = {10.1093/BIOINFORMATICS/BTT183},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HansenGMSM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HarrisLBOW13,
  author       = {Midori A. Harris and
                  Antonia Lock and
                  J{\"{u}}rg B{\"{a}}hler and
                  Stephen G. Oliver and
                  Valerie Wood},
  title        = {{FYPO:} the fission yeast phenotype ontology},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1671--1678},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt266},
  doi          = {10.1093/BIOINFORMATICS/BTT266},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HarrisLBOW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HartleyS13,
  author       = {Stephen W. Hartley and
                  Paola Sebastiani},
  title        = {PleioGRiP: genetic risk prediction with pleiotropy},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {1086--1088},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt081},
  doi          = {10.1093/BIOINFORMATICS/BTT081},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HartleyS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HauboldKHP13,
  author       = {Bernhard Haubold and
                  Linda Krause and
                  Thomas Horn and
                  Peter Pfaffelhuber},
  title        = {An alignment-free test for recombination},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3121--3127},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt550},
  doi          = {10.1093/BIOINFORMATICS/BTT550},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HauboldKHP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaveJ13,
  author       = {Christian Theil Have and
                  Lars Juhl Jensen},
  title        = {Are graph databases ready for bioinformatics?},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3107--3108},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt549},
  doi          = {10.1093/BIOINFORMATICS/BTT549},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HaveJ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HayesSP13,
  author       = {Wayne B. Hayes and
                  Kai Sun and
                  Natasa Przulj},
  title        = {Graphlet-based measures are suitable for biological network comparison},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {483--491},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts729},
  doi          = {10.1093/BIOINFORMATICS/BTS729},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HayesSP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/He13,
  author       = {Dan He},
  title        = {IBD-Groupon: an efficient method for detecting group-wise identity-by-descent
                  regions simultaneously in multiple individuals based on pairwise {IBD}
                  relationships},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {162--170},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt237},
  doi          = {10.1093/BIOINFORMATICS/BTT237},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/He13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeSSLX13,
  author       = {Jianlin He and
                  Xinxi Sun and
                  Xiaojian Shao and
                  Liji Liang and
                  Hehuang Xie},
  title        = {{DMEAS:} {DNA} methylation entropy analysis software},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {2044--2045},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt332},
  doi          = {10.1093/BIOINFORMATICS/BTT332},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HeSSLX13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HebestreitDK13,
  author       = {Katja Hebestreit and
                  Martin Dugas and
                  Hans{-}Ulrich Klein},
  title        = {Detection of significantly differentially methylated regions in targeted
                  bisulfite sequencing data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1647--1653},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt263},
  doi          = {10.1093/BIOINFORMATICS/BTT263},
  timestamp    = {Mon, 01 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HebestreitDK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeckerWT13,
  author       = {Nikolai Hecker and
                  Tim Wiegels and
                  Andrew E. Torda},
  title        = {{RNA} secondary structure diagrams for very large molecules: RNAfdl},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2941--2942},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt496},
  doi          = {10.1093/BIOINFORMATICS/BTT496},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HeckerWT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HegerWGPL13,
  author       = {Andreas Heger and
                  Caleb Webber and
                  Martin Goodson and
                  Chris P. Ponting and
                  Gerton Lunter},
  title        = {{GAT:} a simulation framework for testing the association of genomic
                  intervals},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {2046--2048},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt343},
  doi          = {10.1093/BIOINFORMATICS/BTT343},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HegerWGPL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeiderSCH13,
  author       = {Dominik Heider and
                  Robin Senge and
                  Weiwei Cheng and
                  Eyke H{\"{u}}llermeier},
  title        = {Multilabel classification for exploiting cross-resistance information
                  in {HIV-1} drug resistance prediction},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {1946--1952},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt331},
  doi          = {10.1093/BIOINFORMATICS/BTT331},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HeiderSCH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HickeyPEZH13,
  author       = {Glenn Hickey and
                  Benedict Paten and
                  Dent Earl and
                  Daniel R. Zerbino and
                  David Haussler},
  title        = {{HAL:} a hierarchical format for storing and analyzing multiple genome
                  alignments},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {10},
  pages        = {1341--1342},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt128},
  doi          = {10.1093/BIOINFORMATICS/BTT128},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HickeyPEZH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HillD13,
  author       = {Jamie R. Hill and
                  Charlotte M. Deane},
  title        = {{MP-T:} improving membrane protein alignment for structure prediction},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {54--61},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts640},
  doi          = {10.1093/BIOINFORMATICS/BTS640},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HillD13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HillerWWCMKS13,
  author       = {Karsten Hiller and
                  Andr{\'{e}} Wegner and
                  Daniel Weindl and
                  Thekla Cordes and
                  Christian M. Metallo and
                  Joanne K. Kelleher and
                  Gregory Stephanopoulos},
  title        = {{NTFD} - a stand-alone application for the non-targeted detection
                  of stable isotope-labeled compounds in {GC/MS} data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1226--1228},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt119},
  doi          = {10.1093/BIOINFORMATICS/BTT119},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HillerWWCMKS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HiltemannMNHPAHTSJS13,
  author       = {Saskia D. Hiltemann and
                  Elizabeth A. McClellan and
                  Jos van Nijnatten and
                  Sebastiaan Horsman and
                  Ivo Palli and
                  Ines Teles Alves and
                  Thomas Hartjes and
                  Jan Trapman and
                  Peter J. van der Spek and
                  Guido Jenster and
                  Andrew Stubbs},
  title        = {iFUSE: integrated fusion gene explorer},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1700--1701},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt252},
  doi          = {10.1093/BIOINFORMATICS/BTT252},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HiltemannMNHPAHTSJS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HoffmanDBOP13,
  author       = {Yonit Hoffman and
                  Dvir Dahary and
                  Debora Rosa Bublik and
                  Moshe Oren and
                  Yitzhak Pilpel},
  title        = {The majority of endogenous microRNA targets within Alu elements avoid
                  the microRNA machinery},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {7},
  pages        = {894--902},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt044},
  doi          = {10.1093/BIOINFORMATICS/BTT044},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HoffmanDBOP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Hohna13,
  author       = {Sebastian H{\"{o}}hna},
  title        = {Fast simulation of reconstructed phylogenies under global time-dependent
                  birth-death processes},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1367--1374},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt153},
  doi          = {10.1093/BIOINFORMATICS/BTT153},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Hohna13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HoltonPSM13,
  author       = {Th{\'{e}}r{\`{e}}se A. Holton and
                  Gianluca Pollastri and
                  Denis C. Shields and
                  Catherine Mooney},
  title        = {CPPpred: prediction of cell penetrating peptides},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {3094--3096},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt518},
  doi          = {10.1093/BIOINFORMATICS/BTT518},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HoltonPSM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HonMRL13,
  author       = {Jir{\'{\i}} Hon and
                  Tom{\'{a}}s Mart{\'{\i}}nek and
                  Kamil Rajdl and
                  Matej Lexa},
  title        = {Triplex: an R/Bioconductor package for identification and visualization
                  of potential intramolecular triplex patterns in {DNA} sequences},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {15},
  pages        = {1900--1901},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt299},
  doi          = {10.1093/BIOINFORMATICS/BTT299},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HonMRL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HowisonZD13,
  author       = {Mark Howison and
                  Felipe Zapata and
                  Casey W. Dunn},
  title        = {Toward a statistically explicit understanding of \emph{de novo} sequence
                  assembly},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {2959--2963},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt525},
  doi          = {10.1093/BIOINFORMATICS/BTT525},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HowisonZD13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HsuW13,
  author       = {Kai{-}Cheng Hsu and
                  Feng{-}Sheng Wang},
  title        = {Fuzzy optimization for detecting enzyme targets of human uric acid
                  metabolism},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3191--3198},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt564},
  doi          = {10.1093/BIOINFORMATICS/BTT564},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HsuW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangCLL13,
  author       = {Jinyan Huang and
                  Jun Chen and
                  Mark Lathrop and
                  Liming Liang},
  title        = {A tool for {RNA} sequencing sample identity check},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1463--1464},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt155},
  doi          = {10.1093/BIOINFORMATICS/BTT155},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HuangCLL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangLHLMLZLCHZ13,
  author       = {Wenkang Huang and
                  Shaoyong Lu and
                  Zhimin Huang and
                  Xinyi Liu and
                  Linkai Mou and
                  Yu Luo and
                  Yanlong Zhao and
                  Yaqin Liu and
                  Zhongjie Chen and
                  Tingjun Hou and
                  Jian Zhang},
  title        = {Allosite: a method for predicting allosteric sites},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2357--2359},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt399},
  doi          = {10.1093/BIOINFORMATICS/BTT399},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HuangLHLMLZLCHZ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangLSFL13,
  author       = {Weichun Huang and
                  Rasiah Loganantharaj and
                  Bryce Schroeder and
                  David Fargo and
                  Leping Li},
  title        = {{PAVIS:} a tool for Peak Annotation and Visualization},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {3097--3099},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt520},
  doi          = {10.1093/BIOINFORMATICS/BTT520},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HuangLSFL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangPB13,
  author       = {Lin Huang and
                  Victoria Popic and
                  Serafim Batzoglou},
  title        = {Short read alignment with populations of genomes},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {361--370},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt215},
  doi          = {10.1093/BIOINFORMATICS/BTT215},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HuangPB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangPG13,
  author       = {Ivan K. Huang and
                  Jimin Pei and
                  Nick V. Grishin},
  title        = {Defining and predicting structurally conserved regions in protein
                  superfamilies},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {175--181},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts682},
  doi          = {10.1093/BIOINFORMATICS/BTS682},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HuangPG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangTP13,
  author       = {Hailiang Huang and
                  Sandeep Tata and
                  Robert J. Prill},
  title        = {BlueSNP: {R} package for highly scalable genome-wide association studies
                  using Hadoop clusters},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {135--136},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts647},
  doi          = {10.1093/BIOINFORMATICS/BTS647},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HuangTP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuntleyLCBLHK13,
  author       = {Melanie A. Huntley and
                  Jessica L. Larson and
                  Christina Chaivorapol and
                  Gabriel Becker and
                  Michael Lawrence and
                  Jason A. Hackney and
                  Joshua S. Kaminker},
  title        = {ReportingTools: an automated result processing and presentation toolkit
                  for high-throughput genomic analyses},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3220--3221},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt551},
  doi          = {10.1093/BIOINFORMATICS/BTT551},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HuntleyLCBLHK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IlieM13,
  author       = {Lucian Ilie and
                  Michael Molnar},
  title        = {{RACER:} Rapid and accurate correction of errors in reads},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2490--2493},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt407},
  doi          = {10.1093/BIOINFORMATICS/BTT407},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/IlieM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ImholteSLDG13,
  author       = {Greg C. Imholte and
                  Marie{-}Pier Scott{-}Boyer and
                  Aur{\'{e}}lie Labbe and
                  Christian F. Deschepper and
                  Raphael Gottardo},
  title        = {iBMQ: a R/Bioconductor package for integrated Bayesian modeling of
                  eQTL data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2797--2798},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt485},
  doi          = {10.1093/BIOINFORMATICS/BTT485},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ImholteSLDG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IndioMSFC13,
  author       = {Valentina Indio and
                  Pier Luigi Martelli and
                  Castrense Savojardo and
                  Piero Fariselli and
                  Rita Casadio},
  title        = {The prediction of organelle-targeting peptides in eukaryotic proteins
                  with Grammatical-Restrained Hidden Conditional Random Fields},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {981--988},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt089},
  doi          = {10.1093/BIOINFORMATICS/BTT089},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/IndioMSFC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IqbalTM13,
  author       = {Zamin Iqbal and
                  Isaac Turner and
                  Gil McVean},
  title        = {High-throughput microbial population genomics using the Cortex variation
                  assembler},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {275--276},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts673},
  doi          = {10.1093/BIOINFORMATICS/BTS673},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/IqbalTM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IsonKJBUMMLPR13,
  author       = {Jon C. Ison and
                  Mat{\'{u}}s Kalas and
                  Inge Jonassen and
                  Dan M. Bolser and
                  Mahmut Uludag and
                  Hamish McWilliam and
                  James Malone and
                  Rodrigo Lopez and
                  Steve Pettifer and
                  Peter M. Rice},
  title        = {{EDAM:} an ontology of bioinformatics operations, types of data and
                  identifiers, topics and formats},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {10},
  pages        = {1325--1332},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt113},
  doi          = {10.1093/BIOINFORMATICS/BTT113},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/IsonKJBUMMLPR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IwakiriKAH13,
  author       = {Junichi Iwakiri and
                  Tomoshi Kameda and
                  Kiyoshi Asai and
                  Michiaki Hamada},
  title        = {Analysis of base-pairing probabilities of {RNA} molecules involved
                  in protein-RNA interactions},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2524--2528},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt453},
  doi          = {10.1093/BIOINFORMATICS/BTT453},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/IwakiriKAH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JachietPBLB13,
  author       = {Pierre{-}Alain Jachiet and
                  Romain Pogorelcnik and
                  Anne Berry and
                  Philippe Lopez and
                  Eric Bapteste},
  title        = {MosaicFinder: identification of fused gene families in sequence similarity
                  networks},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {7},
  pages        = {837--844},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt049},
  doi          = {10.1093/BIOINFORMATICS/BTT049},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JachietPBLB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JaiswalCSCR13,
  author       = {Varun Jaiswal and
                  Sree K. Chanumolu and
                  Pankaj Sharma and
                  Rajinder S. Chauhan and
                  Chittaranjan Rout},
  title        = {EpiCombFlu: exploring known influenza epitopes and their combination
                  to design a universal influenza vaccine},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {15},
  pages        = {1904--1907},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt304},
  doi          = {10.1093/BIOINFORMATICS/BTT304},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JaiswalCSCR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JandaMM13,
  author       = {Jan{-}Oliver Janda and
                  Andreas Meier and
                  Rainer Merkl},
  title        = {{CLIPS-4D:} a classifier that distinguishes structurally and functionally
                  important residue-positions based on sequence and 3D data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {3029--3035},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt519},
  doi          = {10.1093/BIOINFORMATICS/BTT519},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JandaMM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JarvstratJGN13,
  author       = {Linnea J{\"{a}}rvstr{\aa}t and
                  Mikael Johansson and
                  Urban Gullberg and
                  Bj{\"{o}}rn Nilsson},
  title        = {Ultranet: efficient solver for the sparse inverse covariance selection
                  problem in gene network modeling},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {511--512},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts717},
  doi          = {10.1093/BIOINFORMATICS/BTS717},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JarvstratJGN13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JayPOHBH13,
  author       = {Nicolas De Jay and
                  Simon Papillon{-}Cavanagh and
                  Catharina Olsen and
                  Nehme Hachem and
                  Gianluca Bontempi and
                  Benjamin Haibe{-}Kains},
  title        = {mRMRe: an {R} package for parallelized mRMR ensemble feature selection},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2365--2368},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt383},
  doi          = {10.1093/BIOINFORMATICS/BTT383},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JayPOHBH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JenkinsFR13,
  author       = {Dafyd J. Jenkins and
                  B{\"{a}}rbel Finkenst{\"{a}}dt and
                  David A. Rand},
  title        = {A temporal switch model for estimating transcriptional activity in
                  gene expression},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1158--1165},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt111},
  doi          = {10.1093/BIOINFORMATICS/BTT111},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JenkinsFR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JeongKP13,
  author       = {Kyowon Jeong and
                  Sangtae Kim and
                  Pavel A. Pevzner},
  title        = {UniNovo: a universal tool for \emph{de novo} peptide sequencing},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {1953--1962},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt338},
  doi          = {10.1093/BIOINFORMATICS/BTT338},
  timestamp    = {Fri, 20 Nov 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JeongKP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiCLG13,
  author       = {Renkai Ji and
                  Qian Cong and
                  Wenlin Li and
                  Nick V. Grishin},
  title        = {{M2SG:} mapping human disease-related genetic variants to protein
                  sequences and genomic loci},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2953--2954},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt507},
  doi          = {10.1093/BIOINFORMATICS/BTT507},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JiCLG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiangLB13,
  author       = {Bo Jiang and
                  Jun S. Liu and
                  Martha L. Bulyk},
  title        = {Bayesian hierarchical model of protein-binding microarray \emph{k}-mer
                  data reduces noise and identifies transcription factor subclasses
                  and preferred \emph{k}-mers},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1390--1398},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt152},
  doi          = {10.1093/BIOINFORMATICS/BTT152},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JiangLB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiangLWWXOJ13,
  author       = {Wenchao Jiang and
                  Pinghao Li and
                  Shuang Wang and
                  Yuan Wu and
                  Meng Xue and
                  Lucila Ohno{-}Machado and
                  Xiaoqian Jiang},
  title        = {WebGLORE: a Web service for Grid LOgistic REgression},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3238--3240},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt559},
  doi          = {10.1093/BIOINFORMATICS/BTT559},
  timestamp    = {Mon, 19 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JiangLWWXOJ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiangZMLCYDWLLWL13,
  author       = {Wei Jiang and
                  Yan Zhang and
                  Fanlin Meng and
                  Baofeng Lian and
                  Xiaowen Chen and
                  Xuexin Yu and
                  Enyu Dai and
                  Shuyuan Wang and
                  Xinyi Liu and
                  Xiang Li and
                  Lihong Wang and
                  Xia Li},
  title        = {Identification of active transcription factor and miRNA regulatory
                  pathways in Alzheimer's disease},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2596--2602},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt423},
  doi          = {10.1093/BIOINFORMATICS/BTT423},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JiangZMLCYDWLLWL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Jimenez-GarciaPF13,
  author       = {Brian Jim{\'{e}}nez{-}Garc{\'{\i}}a and
                  Carles Pons and
                  Juan Fern{\'{a}}ndez{-}Recio},
  title        = {pyDockWEB: a web server for rigid-body protein-protein docking using
                  electrostatics and desolvation scoring},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1698--1699},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt262},
  doi          = {10.1093/BIOINFORMATICS/BTT262},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Jimenez-GarciaPF13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JimenezAB13,
  author       = {Rafael C. Jim{\'{e}}nez and
                  Juan P. Albar and
                  Jong Bhak and
                  Marie{-}Claude Blatter and
                  Thomas Blicher and
                  Michelle D. Brazas and
                  Catherine Brooksbank and
                  Aidan Budd and
                  Javier De Las Rivas and
                  Jacqueline Dreyer and
                  Marc A. van Driel and
                  Michael J. Dunn and
                  Pedro L. Fernandes and
                  Celia W. G. van Gelder and
                  Henning Hermjakob and
                  Vassilios Ioannidis and
                  David Phillip Judge and
                  Pascal Kahlem and
                  Eija Korpelainen and
                  Hans{-}Joachim Kraus and
                  Jane E. Loveland and
                  Christine Mayer and
                  Jennifer McDowall and
                  Federico Mor{\'{a}}n and
                  Nicola J. Mulder and
                  Tommi H. Nyr{\"{o}}nen and
                  Kristian Rother and
                  Gustavo A. Salazar and
                  Reinhard Schneider and
                  Allegra Via and
                  Jose M. Villaveces and
                  Ping Yu and
                  Maria Victoria Schneider and
                  Teresa K. Attwood and
                  Manuel Corpas},
  title        = {iAnn: an event sharing platform for the life sciences},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {15},
  pages        = {1919--1921},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt306},
  doi          = {10.1093/BIOINFORMATICS/BTT306},
  timestamp    = {Thu, 25 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JimenezAB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JinLWWC13,
  author       = {Jingjing Jin and
                  Jun Liu and
                  Huan Wang and
                  Limsoon Wong and
                  Nam{-}Hai Chua},
  title        = {PLncDB: plant long non-coding {RNA} database},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {1068--1071},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt107},
  doi          = {10.1093/BIOINFORMATICS/BTT107},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JinLWWC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JjingoWCLJ13,
  author       = {Daudi Jjingo and
                  Jianrong Wang and
                  Andrew B. Conley and
                  Victoria V. Lunyak and
                  I King Jordan},
  title        = {Compound \emph{cis}-regulatory elements with both boundary and enhancer
                  sequences in the human genome},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3109--3112},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt542},
  doi          = {10.1093/BIOINFORMATICS/BTT542},
  timestamp    = {Sun, 14 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JjingoWCLJ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JonssonGSJO13,
  author       = {H{\'{a}}kon J{\'{o}}nsson and
                  Aurelien Ginolhac and
                  Mikkel Schubert and
                  Philip L. F. Johnson and
                  Ludovic Orlando},
  title        = {mapDamage2.0: fast approximate Bayesian estimates of ancient {DNA}
                  damage parameters},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1682--1684},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt193},
  doi          = {10.1093/BIOINFORMATICS/BTT193},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JonssonGSJO13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Jost13,
  author       = {Daniel Jost},
  title        = {Twist-DNA: computing base-pair and bubble opening probabilities in
                  genomic superhelical {DNA}},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2479--2481},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt415},
  doi          = {10.1093/BIOINFORMATICS/BTT415},
  timestamp    = {Wed, 04 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Jost13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JuWHWZ13,
  author       = {Lining Ju and
                  Yijie Dylan Wang and
                  Ying Hung and
                  Chien{-}Fu Jeff Wu and
                  Cheng Zhu},
  title        = {An HMM-based algorithm for evaluating rates of receptor-ligand binding
                  kinetics from thermal fluctuation data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {12},
  pages        = {1511--1518},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt180},
  doi          = {10.1093/BIOINFORMATICS/BTT180},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JuWHWZ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JungL13,
  author       = {Jinmyung Jung and
                  Doheon Lee},
  title        = {Inferring disease association using clinical factors in a combinatorial
                  manner and their use in drug repositioning},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {2017--2023},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt327},
  doi          = {10.1093/BIOINFORMATICS/BTT327},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JungL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KacprowskiDA13,
  author       = {Tim Kacprowski and
                  Nadezhda T. Doncheva and
                  Mario Albrecht},
  title        = {NetworkPrioritizer: a versatile tool for network-based prioritization
                  of candidate disease genes or other molecules},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1471--1473},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt164},
  doi          = {10.1093/BIOINFORMATICS/BTT164},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KacprowskiDA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KalkatawiRSJKCAB13,
  author       = {Manal Kalkatawi and
                  Farania Rangkuti and
                  Michael Schramm and
                  Boris R. Jankovic and
                  Allan Kamau and
                  Rajesh Chowdhary and
                  John A. C. Archer and
                  Vladimir B. Bajic},
  title        = {Dragon PolyA Spotter: predictor of poly(A) motifs within human genomic
                  {DNA} sequences},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1484},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt161},
  doi          = {10.1093/BIOINFORMATICS/BTT161},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KalkatawiRSJKCAB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KammBLV13,
  author       = {Liina Kamm and
                  Dan Bogdanov and
                  Sven Laur and
                  Jaak Vilo},
  title        = {A new way to protect privacy in large-scale genome-wide association
                  studies},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {7},
  pages        = {886--893},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt066},
  doi          = {10.1093/BIOINFORMATICS/BTT066},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KammBLV13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KangHXWAL13,
  author       = {Jian Kang and
                  Kuan{-}Chieh Huang and
                  Zheng Xu and
                  Yunfei Wang and
                  Gon{\c{c}}alo R. Abecasis and
                  Yun Li},
  title        = {AbCD: arbitrary coverage design for sequencing-based genetic studies},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {799--801},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt041},
  doi          = {10.1093/BIOINFORMATICS/BTT041},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KangHXWAL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KatayamaTLK13,
  author       = {Shintaro Katayama and
                  Virpi T{\"{o}}h{\"{o}}nen and
                  Sten Linnarsson and
                  Juha Kere},
  title        = {SAMstrt: statistical test for differential expression in single-cell
                  transcriptome with spike-in normalization},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2943--2945},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt511},
  doi          = {10.1093/BIOINFORMATICS/BTT511},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KatayamaTLK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KeaneWA13,
  author       = {Thomas M. Keane and
                  Kim Wong and
                  David J. Adams},
  title        = {RetroSeq: transposable element discovery from next-generation sequencing
                  data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {389--390},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts697},
  doi          = {10.1093/BIOINFORMATICS/BTS697},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KeaneWA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KelleherBE13,
  author       = {Jerome Kelleher and
                  Nicholas H. Barton and
                  Alison M. Etheridge},
  title        = {Coalescent simulation in continuous space},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {7},
  pages        = {955--956},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt067},
  doi          = {10.1093/BIOINFORMATICS/BTT067},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KelleherBE13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KemenaBCMN13,
  author       = {Carsten Kemena and
                  Giovanni Bussotti and
                  Emidio Capriotti and
                  Marc A. Mart{\'{\i}}{-}Renom and
                  C{\'{e}}dric Notredame},
  title        = {Using tertiary structure for the computation of highly accurate multiple
                  {RNA} alignments with the SARA-Coffee package},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1112--1119},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt096},
  doi          = {10.1093/BIOINFORMATICS/BTT096},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KemenaBCMN13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KesslerNBLNNG13,
  author       = {Nikolas Kessler and
                  Heiko Neuweger and
                  Anja Bonte and
                  Georg Langenk{\"{a}}mper and
                  Karsten Niehaus and
                  Tim W. Nattkemper and
                  Alexander Goesmann},
  title        = {MeltDB 2.0-advances of the metabolomics software system},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2452--2459},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt414},
  doi          = {10.1093/BIOINFORMATICS/BTT414},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KesslerNBLNNG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KieferSV13,
  author       = {Patrick Kiefer and
                  Uwe Schmitt and
                  Julia A. Vorholt},
  title        = {eMZed: an open source framework in Python for rapid and interactive
                  development of {LC/MS} data analysis workflows},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {7},
  pages        = {963--964},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt080},
  doi          = {10.1093/BIOINFORMATICS/BTT080},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KieferSV13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimHC13,
  author       = {Ka{-}Kyung Kim and
                  Juyoung Ham and
                  Sung Wook Chi},
  title        = {miRTCat: a comprehensive map of human and mouse microRNA target sites
                  including non-canonical nucleation bulges},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {15},
  pages        = {1898--1899},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt296},
  doi          = {10.1093/BIOINFORMATICS/BTT296},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KimHC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimJB13,
  author       = {Sangwoo Kim and
                  Kyowon Jeong and
                  Vineet Bafna},
  title        = {Wessim: a whole-exome sequencing simulator based on \emph{in silico}
                  exome capture},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {1076--1077},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt074},
  doi          = {10.1093/BIOINFORMATICS/BTT074},
  timestamp    = {Fri, 20 Nov 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KimJB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KirrbachKRPAL13,
  author       = {Jan Kirrbach and
                  Miriam Krugliak and
                  Christian L. Ried and
                  Philipp Pagel and
                  Isaiah T. Arkin and
                  Dieter Langosch},
  title        = {Self-interaction of transmembrane helices representing pre-clusters
                  from the human single-span membrane proteins},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1623--1630},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt247},
  doi          = {10.1093/BIOINFORMATICS/BTT247},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KirrbachKRPAL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KlingenbergALM13,
  author       = {Heiner Klingenberg and
                  Kathrin Petra A{\ss}hauer and
                  Thomas Lingner and
                  Peter Meinicke},
  title        = {Protein signature-based estimation of metagenomic abundances including
                  all domains of life and viruses},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {973--980},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt077},
  doi          = {10.1093/BIOINFORMATICS/BTT077},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KlingenbergALM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KnowlesRMG13,
  author       = {David G. Knowles and
                  Maik R{\"{o}}der and
                  Angelika Merkel and
                  Roderic Guig{\'{o}}},
  title        = {Grape RNA-Seq analysis pipeline environment},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {614--621},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt016},
  doi          = {10.1093/BIOINFORMATICS/BTT016},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KnowlesRMG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KocakGPP13,
  author       = {Mehmet Kocak and
                  E. Olusegun George and
                  Saumyadipta Pyne and
                  Stanley Pounds},
  title        = {An empirical Bayes approach for analysis of diverse periodic trends
                  in time-course gene expression data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {182--188},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts672},
  doi          = {10.1093/BIOINFORMATICS/BTS672},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KocakGPP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KojimaNMTYSN13,
  author       = {Kaname Kojima and
                  Naoki Nariai and
                  Takahiro Mimori and
                  Mamoru Takahashi and
                  Yumi Yamaguchi{-}Kabata and
                  Yukuto Sato and
                  Masao Nagasaki},
  title        = {A statistical variant calling approach from pedigree information and
                  local haplotyping with phase informative reads},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2835--2843},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt503},
  doi          = {10.1093/BIOINFORMATICS/BTT503},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KojimaNMTYSN13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KorparS13,
  author       = {Matija Korpar and
                  Mile Sikic},
  title        = {SW{\#}-GPU-enabled exact alignments on genome scale},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2494--2495},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt410},
  doi          = {10.1093/BIOINFORMATICS/BTT410},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KorparS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KosinskiBT13,
  author       = {Jan Kosinski and
                  Alessandro Barbato and
                  Anna Tramontano},
  title        = {MODexplorer: an integrated tool for exploring protein sequence, structure
                  and function relationships},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {7},
  pages        = {953--954},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt062},
  doi          = {10.1093/BIOINFORMATICS/BTT062},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KosinskiBT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KoslickiFR13,
  author       = {David Koslicki and
                  Simon Foucart and
                  Gail Rosen},
  title        = {Quikr: a method for rapid reconstruction of bacterial communities
                  via compressive sensing},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2096--2102},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt336},
  doi          = {10.1093/BIOINFORMATICS/BTT336},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KoslickiFR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KoteraTYTG13,
  author       = {Masaaki Kotera and
                  Yasuo Tabei and
                  Yoshihiro Yamanishi and
                  Toshiaki Tokimatsu and
                  Susumu Goto},
  title        = {Supervised \emph{de novo} reconstruction of metabolic pathways from
                  metabolome-scale compound sets},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {135--144},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt244},
  doi          = {10.1093/BIOINFORMATICS/BTT244},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KoteraTYTG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KramerBKBB13,
  author       = {Frank Kramer and
                  Michaela Bayerlov{\'{a}} and
                  Florian Klemm and
                  Annalen Bleckmann and
                  Tim Bei{\ss}barth},
  title        = {rBiopaxParser - an {R} package to parse, modify and visualize BioPAX
                  data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {520--522},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts710},
  doi          = {10.1093/BIOINFORMATICS/BTS710},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KramerBKBB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KrauseSRFKKH13,
  author       = {Falko Krause and
                  Marvin Schulz and
                  Ben Ripkens and
                  Max Fl{\"{o}}ttmann and
                  Marcus Krantz and
                  Edda Klipp and
                  Thomas Handorf},
  title        = {Biographer: web-based editing and rendering of {SBGN} compliant biochemical
                  networks},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1467--1468},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt159},
  doi          = {10.1093/BIOINFORMATICS/BTT159},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KrauseSRFKKH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KrzeminskiMNCF13,
  author       = {Micka{\"{e}}l Krzeminski and
                  Joseph A. Marsh and
                  Chris Neale and
                  Wing{-}Yiu Choy and
                  Julie D. Forman{-}Kay},
  title        = {Characterization of disordered proteins with {ENSEMBLE}},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {398--399},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts701},
  doi          = {10.1093/BIOINFORMATICS/BTS701},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KrzeminskiMNCF13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KshirsagarCK13,
  author       = {Meghana Kshirsagar and
                  Jaime G. Carbonell and
                  Judith Klein{-}Seetharaman},
  title        = {Multitask learning for host-pathogen protein interactions},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {217--226},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt245},
  doi          = {10.1093/BIOINFORMATICS/BTT245},
  timestamp    = {Mon, 31 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KshirsagarCK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KucukuralOSMC13,
  author       = {Alper K{\"{u}}{\c{c}}{\"{u}}kural and
                  Hakan {\"{O}}zadam and
                  Guramrit Singh and
                  Melissa J. Moore and
                  Can Cenik},
  title        = {ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2485--2486},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt428},
  doi          = {10.1093/BIOINFORMATICS/BTT428},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KucukuralOSMC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KumagaiKII13,
  author       = {Masahiko Kumagai and
                  Jungsok Kim and
                  Ryutaro Itoh and
                  Takeshi Itoh},
  title        = {Tasuke: a web-based visualization program for large-scale resequencing
                  data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1806--1808},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt295},
  doi          = {10.1093/BIOINFORMATICS/BTT295},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KumagaiKII13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KunduCB13,
  author       = {Kousik Kundu and
                  Fabrizio Costa and
                  Rolf Backofen},
  title        = {A graph kernel approach for alignment-free domain-peptide interaction
                  prediction with an application to human {SH3} domains},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {335--343},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt220},
  doi          = {10.1093/BIOINFORMATICS/BTT220},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KunduCB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KuwaharaFWG13,
  author       = {Hiroyuki Kuwahara and
                  Ming Fan and
                  Suojin Wang and
                  Xin Gao},
  title        = {A framework for scalable parameter estimation of gene circuit models
                  using structural information},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {98--107},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt232},
  doi          = {10.1093/BIOINFORMATICS/BTT232},
  timestamp    = {Thu, 31 Mar 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KuwaharaFWG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaguninIRFP13,
  author       = {Alexey Lagunin and
                  Sergey Ivanov and
                  Anastasia V. Rudik and
                  Dmitry Filimonov and
                  Vladimir Poroikov},
  title        = {DIGEP-Pred: web service for \emph{in silico} prediction of drug-induced
                  gene expression profiles based on structural formula},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {2062--2063},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt322},
  doi          = {10.1093/BIOINFORMATICS/BTT322},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LaguninIRFP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaiB13,
  author       = {William K. M. Lai and
                  Michael J. Buck},
  title        = {An integrative approach to understanding the combinatorial histone
                  code at functional elements},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2231--2237},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt382},
  doi          = {10.1093/BIOINFORMATICS/BTT382},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LaiB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LanZL13,
  author       = {Alexander Lan and
                  Michal Ziv{-}Ukelson and
                  Esti Yeger Lotem},
  title        = {A context-sensitive framework for the analysis of human signalling
                  pathways in molecular interaction networks},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {210--216},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt240},
  doi          = {10.1093/BIOINFORMATICS/BTT240},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LanZL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LangePSSZS13,
  author       = {Kenneth Lange and
                  Jeanette C. Papp and
                  Janet S. Sinsheimer and
                  Ram Sripracha and
                  Hua Zhou and
                  Eric M. Sobel},
  title        = {Mendel: the Swiss army knife of genetic analysis programs},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {12},
  pages        = {1568--1570},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt187},
  doi          = {10.1093/BIOINFORMATICS/BTT187},
  timestamp    = {Fri, 13 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LangePSSZS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LarsonF13,
  author       = {Nicholas B. Larson and
                  Brooke L. Fridley},
  title        = {PurBayes: estimating tumor cellularity and subclonality in next-generation
                  sequencing data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {15},
  pages        = {1888--1889},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt293},
  doi          = {10.1093/BIOINFORMATICS/BTT293},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LarsonF13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LayerSRHQ13,
  author       = {Ryan M. Layer and
                  Kevin Skadron and
                  Gabriel Robins and
                  Ira M. Hall and
                  Aaron R. Quinlan},
  title        = {Binary Interval Search: a scalable algorithm for counting interval
                  intersections},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {1--7},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts652},
  doi          = {10.1093/BIOINFORMATICS/BTS652},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LayerSRHQ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeB13,
  author       = {Hai{-}Son Le and
                  Ziv Bar{-}Joseph},
  title        = {Integrating sequence, expression and interaction data to determine
                  condition-specific miRNA regulation},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {89--97},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt231},
  doi          = {10.1093/BIOINFORMATICS/BTT231},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LeB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeGaultD13,
  author       = {Laura H. LeGault and
                  Colin N. Dewey},
  title        = {Inference of alternative splicing from RNA-Seq data with probabilistic
                  splice graphs},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2300--2310},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt396},
  doi          = {10.1093/BIOINFORMATICS/BTT396},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LeGaultD13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeK13,
  author       = {Duc{-}Hau Le and
                  Yung{-}Keun Kwon},
  title        = {A coherent feedforward loop design principle to sustain robustness
                  of biological networks},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {630--637},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt026},
  doi          = {10.1093/BIOINFORMATICS/BTT026},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LeK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeLTG0SL13,
  author       = {Thuc Duy Le and
                  Lin Liu and
                  Anna Tsykin and
                  Gregory J. Goodall and
                  Bing Liu and
                  Bing{-}Yu Sun and
                  Jiuyong Li},
  title        = {Inferring microRNA-mRNA causal regulatory relationships from expression
                  data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {765--771},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt048},
  doi          = {10.1093/BIOINFORMATICS/BTT048},
  timestamp    = {Sun, 25 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LeLTG0SL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeamanDL13,
  author       = {Robert Leaman and
                  Rezarta Islamaj Dogan and
                  Zhiyong Lu},
  title        = {DNorm: disease name normalization with pairwise learning to rank},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2909--2917},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt474},
  doi          = {10.1093/BIOINFORMATICS/BTT474},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LeamanDL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LedayW13,
  author       = {Gwena{\"{e}}l G. R. Leday and
                  Mark A. van de Wiel},
  title        = {{PLRS:} a flexible tool for the joint analysis of {DNA} copy number
                  and mRNA expression data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {1081--1082},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt082},
  doi          = {10.1093/BIOINFORMATICS/BTT082},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LedayW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeBM13,
  author       = {Woonghee Lee and
                  Arash Bahrami and
                  John L. Markley},
  title        = {{ADAPT-NMR} Enhancer: complete package for reduced dimensionality
                  in protein {NMR} spectroscopy},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {515--517},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts692},
  doi          = {10.1093/BIOINFORMATICS/BTS692},
  timestamp    = {Mon, 30 Oct 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LeeBM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeBRFB13,
  author       = {Donghyung Lee and
                  T. Bernard Bigdeli and
                  Brien P. Riley and
                  Ayman H. Fanous and
                  Silviu{-}Alin Bacanu},
  title        = {{DIST:} direct imputation of summary statistics for unmeasured SNPs},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2925--2927},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt500},
  doi          = {10.1093/BIOINFORMATICS/BTT500},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LeeBRFB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeC13,
  author       = {Che{-}Yu Lee and
                  Liang Chen},
  title        = {Alternative polyadenylation sites reveal distinct chromatin accessibility
                  and histone modification in human cell lines},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1713--1717},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt288},
  doi          = {10.1093/BIOINFORMATICS/BTT288},
  timestamp    = {Tue, 07 Feb 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LeeC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeCSED13,
  author       = {Seonjoo Lee and
                  Pauline E. Chugh and
                  Haipeng Shen and
                  R. Eberle and
                  Dirk P. Dittmer},
  title        = {Poisson factor models with applications to non-normalized microRNA
                  profiling},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1105--1111},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt091},
  doi          = {10.1093/BIOINFORMATICS/BTT091},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LeeCSED13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeKZT13,
  author       = {Young{-}Suk Lee and
                  Arjun Krishnan and
                  Qian Zhu and
                  Olga G. Troyanskaya},
  title        = {Ontology-aware classification of tissue and cell-type signals in gene
                  expression profiles across platforms and technologies},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {3036--3044},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt529},
  doi          = {10.1093/BIOINFORMATICS/BTT529},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LeeKZT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeePKS13,
  author       = {Hasup Lee and
                  Hahnbeom Park and
                  Junsu Ko and
                  Chaok Seok},
  title        = {GalaxyGemini: a web server for protein homo-oligomer structure prediction
                  based on similarity},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {1078--1080},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt079},
  doi          = {10.1093/BIOINFORMATICS/BTT079},
  timestamp    = {Wed, 08 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LeePKS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeZ13,
  author       = {Yuju Lee and
                  Qing Zhou},
  title        = {Co-regulation in embryonic stem cells via context-dependent binding
                  of transcription factors},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2162--2168},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt365},
  doi          = {10.1093/BIOINFORMATICS/BTT365},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LeeZ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeiR13,
  author       = {Chengwei Lei and
                  Jianhua Ruan},
  title        = {A novel link prediction algorithm for reconstructing protein-protein
                  interaction networks by topological similarity},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {355--364},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts688},
  doi          = {10.1093/BIOINFORMATICS/BTS688},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LeiR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LemetreZZ13,
  author       = {Christophe Lemetre and
                  Quanwei Zhang and
                  Zhengdong D. Zhang},
  title        = {SubNet: a Java application for subnetwork extraction},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2958},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt579},
  doi          = {10.1093/BIOINFORMATICS/BTT579},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LemetreZZ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LengDTRRSHGSK13,
  author       = {Ning Leng and
                  John A. Dawson and
                  James A. Thomson and
                  Victor Ruotti and
                  Anna I. Rissman and
                  Bart M. G. Smits and
                  Jill D. Haag and
                  Michael N. Gould and
                  Ron M. Stewart and
                  Christina Kendziorski},
  title        = {EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq
                  experiments},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {1035--1043},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt087},
  doi          = {10.1093/BIOINFORMATICS/BTT087},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LengDTRRSHGSK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LengDTRRSHGSK13a,
  author       = {Ning Leng and
                  John A. Dawson and
                  James A. Thomson and
                  Victor Ruotti and
                  Anna I. Rissman and
                  Bart M. G. Smits and
                  Jill D. Haag and
                  Michael N. Gould and
                  Ron M. Stewart and
                  Christina Kendziorski},
  title        = {EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq
                  experiments},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {2073},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt337},
  doi          = {10.1093/BIOINFORMATICS/BTT337},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LengDTRRSHGSK13a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeporeTV13,
  author       = {Rosalba Lepore and
                  Anna Tramontano and
                  Allegra Via},
  title        = {TiPs: a database of therapeutic targets in pathogens and associated
                  tools},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1821--1822},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt289},
  doi          = {10.1093/BIOINFORMATICS/BTT289},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LeporeTV13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LevineDGWH13,
  author       = {Timothy P. Levine and
                  Rachel D. Daniels and
                  Alberto T. Gatta and
                  Louise H. Wong and
                  Matthew J. Hayes},
  title        = {The product of C9orf72, a gene strongly implicated in neurodegeneration,
                  is structurally related to {DENN} Rab-GEFs},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {499--503},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts725},
  doi          = {10.1093/BIOINFORMATICS/BTS725},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LevineDGWH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiC13,
  author       = {Yang I. Li and
                  Richard R. Copley},
  title        = {Scaffolding low quality genomes using orthologous protein sequences},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {160--165},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts661},
  doi          = {10.1093/BIOINFORMATICS/BTS661},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LiC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiCLLNWB13,
  author       = {Zhenpeng Li and
                  Xiuliang Cui and
                  Fei Li and
                  Peng Li and
                  Ming Ni and
                  Shengqi Wang and
                  Xiaochen Bo},
  title        = {Exploring the role of human miRNAs in virus-host interactions using
                  systematic overlap analysis},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2375--2379},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt391},
  doi          = {10.1093/BIOINFORMATICS/BTT391},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LiCLLNWB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiKG13,
  author       = {Wenlin Li and
                  Lisa N. Kinch and
                  Nick V. Grishin},
  title        = {Pclust: protein network visualization highlighting experimental data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2647--2648},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt451},
  doi          = {10.1093/BIOINFORMATICS/BTT451},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LiKG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiLLFZP13,
  author       = {Tao Li and
                  Qian{-}Zhong Li and
                  Shuai Liu and
                  Guo{-}Liang Fan and
                  Yongchun Zuo and
                  Yong Peng},
  title        = {PreDNA: accurate prediction of DNA-binding sites in proteins by integrating
                  sequence and geometric structure information},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {678--685},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt029},
  doi          = {10.1093/BIOINFORMATICS/BTT029},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LiLLFZP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiWYCWC13,
  author       = {Jing{-}Woei Li and
                  Raymond Wan and
                  Chi{-}Shing Yu and
                  Ngai Na Co and
                  Nathalie Wong and
                  Ting{-}Fung Chan},
  title        = {ViralFusionSeq: accurately discover viral integration events and reconstruct
                  fusion transcripts at single-base resolution},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {649--651},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt011},
  doi          = {10.1093/BIOINFORMATICS/BTT011},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LiWYCWC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiberalP13,
  author       = {Rodrigo Liberal and
                  John W. Pinney},
  title        = {Simple topological properties predict functional misannotations in
                  a metabolic network},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {154--161},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt236},
  doi          = {10.1093/BIOINFORMATICS/BTT236},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LiberalP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LibinBDIFLTCCLTAWSRBLMWZKAPOAGSOPBCV13,
  author       = {Pieter Libin and
                  Gertjan Beheydt and
                  Koen Deforche and
                  Stijn Imbrechts and
                  Fossie Ferreira and
                  Kristel Van Laethem and
                  Kristof Theys and
                  Ana Patricia Carvalho and
                  Joana Cavaco{-}Silva and
                  Giuseppe Lapadula and
                  Carlo Torti and
                  Matthias Assel and
                  Stefan Wesner and
                  Joke Snoeck and
                  Jean Ruelle and
                  Annelies De Bel and
                  Patrick Lacor and
                  Paul De Munter and
                  Eric Van Wijngaerden and
                  Maurizio Zazzi and
                  Rolf Kaiser and
                  Ahidjo Ayouba and
                  Martine Peeters and
                  Tulio de Oliveira and
                  Luiz Carlos J{\'{u}}nior Alc{\^{a}}ntara and
                  Zehava Grossman and
                  Peter M. A. Sloot and
                  Dan Otelea and
                  Simona Paraschiv and
                  Charles A. Boucher and
                  Ricardo Camacho and
                  Anne{-}Mieke Vandamme},
  title        = {RegaDB: community-driven data management and analysis for infectious
                  diseases},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1477--1480},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt162},
  doi          = {10.1093/BIOINFORMATICS/BTT162},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LibinBDIFLTCCLTAWSRBLMWZKAPOAGSOPBCV13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LillacciK13,
  author       = {Gabriele Lillacci and
                  Mustafa Khammash},
  title        = {The signal within the noise: efficient inference of stochastic gene
                  regulation models using fluorescence histograms and stochastic simulations},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2311--2319},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt380},
  doi          = {10.1093/BIOINFORMATICS/BTT380},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LillacciK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LimSMd13,
  author       = {N{\'{e}}h{\'{e}}my Lim and
                  Yasin Senbabaoglu and
                  George Michailidis and
                  Florence d'Alch{\'{e}}{-}Buc},
  title        = {OKVAR-Boost: a novel boosting algorithm to infer nonlinear dynamics
                  and interactions in gene regulatory networks},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1416--1423},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt167},
  doi          = {10.1093/BIOINFORMATICS/BTT167},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LimSMd13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinHM13,
  author       = {Hao Lin and
                  Lin He and
                  Bin Ma},
  title        = {A combinatorial approach to the peptide feature matching problem for
                  label-free quantification},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1768--1775},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt274},
  doi          = {10.1093/BIOINFORMATICS/BTT274},
  timestamp    = {Wed, 15 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LinHM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinSRZSZL13,
  author       = {Xueqiu Lin and
                  Deqiang Sun and
                  Benjamin Rodriguez and
                  Qian Zhao and
                  Hanfei Sun and
                  Yong Zhang and
                  Wei Li},
  title        = {BSeQC: quality control of bisulfite sequencing experiments},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3227--3229},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt548},
  doi          = {10.1093/BIOINFORMATICS/BTT548},
  timestamp    = {Mon, 20 Feb 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LinSRZSZL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinVCKGHTSW13,
  author       = {Chiao{-}Feng Lin and
                  Otto Valladares and
                  Daniel M. Childress and
                  Egor Klevak and
                  Evan T. Geller and
                  Yih{-}Chii Hwang and
                  Ellen A. Tsai and
                  Gerard D. Schellenberg and
                  Li{-}San Wang},
  title        = {DRAW+SneakPeek: Analysis workflow and quality metric management for
                  DNA-seq experiments},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2498--2500},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt422},
  doi          = {10.1093/BIOINFORMATICS/BTT422},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LinVCKGHTSW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LindnerKZR13,
  author       = {Martin S. Lindner and
                  Maximilian Kollock and
                  Franziska Zickmann and
                  Bernhard Y. Renard},
  title        = {Analyzing genome coverage profiles with applications to quality control
                  in metagenomics},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {10},
  pages        = {1260--1267},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt147},
  doi          = {10.1093/BIOINFORMATICS/BTT147},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LindnerKZR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiscovitchSC13,
  author       = {Noa Liscovitch and
                  Uri Shalit and
                  Gal Chechik},
  title        = {FuncISH: learning a functional representation of neural {ISH} images},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {36--43},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt207},
  doi          = {10.1093/BIOINFORMATICS/BTT207},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LiscovitchSC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ListgartenLKXKH13,
  author       = {Jennifer Listgarten and
                  Christoph Lippert and
                  Eun Yong Kang and
                  Jing Xiang and
                  Carl Myers Kadie and
                  David Heckerman},
  title        = {A powerful and efficient set test for genetic markers that handles
                  confounders},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {12},
  pages        = {1526--1533},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt177},
  doi          = {10.1093/BIOINFORMATICS/BTT177},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ListgartenLKXKH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuLXYYHSZSLXZDL13,
  author       = {Wei Liu and
                  Chunquan Li and
                  Yanjun Xu and
                  Haixiu Yang and
                  Qianlan Yao and
                  Junwei Han and
                  Desi Shang and
                  Chunlong Zhang and
                  Fei Su and
                  Xiaoxi Li and
                  Yun Xiao and
                  Fan Zhang and
                  Meng Dai and
                  Xia Li},
  title        = {Topologically inferring risk-active pathways toward precise cancer
                  classification by directed random walk},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2169--2177},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt373},
  doi          = {10.1093/BIOINFORMATICS/BTT373},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LiuLXYYHSZSLXZDL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuLY13,
  author       = {Chia Hsin Liu and
                  Ker{-}Chau Li and
                  Shinsheng Yuan},
  title        = {Human protein-protein interaction prediction by a novel sequence-based
                  co-evolution method: co-evolutionary divergence},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {92--98},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts620},
  doi          = {10.1093/BIOINFORMATICS/BTS620},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LiuLY13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuPN13,
  author       = {Gang Liu and
                  Apurv Puri and
                  Sriram Neelamegham},
  title        = {Glycosylation Network Analysis Toolbox: a MATLAB-based environment
                  for systems glycobiology},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {404--406},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts703},
  doi          = {10.1093/BIOINFORMATICS/BTS703},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LiuPN13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuSS13,
  author       = {Yongchao Liu and
                  Jan Schr{\"{o}}der and
                  Bertil Schmidt},
  title        = {Musket: a multistage \emph{k-}mer spectrum-based error corrector for
                  Illumina sequence data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {308--315},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts690},
  doi          = {10.1093/BIOINFORMATICS/BTS690},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LiuSS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuVHC13,
  author       = {Xueping Liu and
                  Ingo Vogt and
                  Tanzeem Haque and
                  M{\'{o}}nica Campillos},
  title        = {HitPick: a web server for hit identification and target prediction
                  of chemical screenings},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {15},
  pages        = {1910--1912},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt303},
  doi          = {10.1093/BIOINFORMATICS/BTT303},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LiuVHC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuWMWZDYLJ13,
  author       = {Xinyi Liu and
                  Shuyuan Wang and
                  Fanlin Meng and
                  Jizhe Wang and
                  Yan Zhang and
                  Enyu Dai and
                  Xuexin Yu and
                  Xia Li and
                  Wei Jiang},
  title        = {SM2miR: a database of the experimentally validated small molecules'
                  effects on microRNA expression},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {409--411},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts698},
  doi          = {10.1093/BIOINFORMATICS/BTS698},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LiuWMWZDYLJ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuYLS13,
  author       = {Ke Liu and
                  Zhangming Yan and
                  Yuchao Li and
                  Zhirong Sun},
  title        = {Linc2GO: a human LincRNA function annotation resource based on ceRNA
                  hypothesis},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2221--2222},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt361},
  doi          = {10.1093/BIOINFORMATICS/BTT361},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LiuYLS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LobanovSDSSG13,
  author       = {Michail Yu. Lobanov and
                  Masha Yu. Suvorina and
                  Nikita V. Dovidchenko and
                  Igor V. Sokolovskiy and
                  Alexey K. Surin and
                  Oxana V. Galzitskaya},
  title        = {A novel web server predicts amino acid residue protection against
                  hydrogen-deuterium exchange},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1375--1381},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt168},
  doi          = {10.1093/BIOINFORMATICS/BTT168},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LobanovSDSSG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LoboML13,
  author       = {Daniel Lobo and
                  Taylor J. Malone and
                  Michael Levin},
  title        = {Planform: an application and database of graph-encoded planarian regenerative
                  experiments},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {1098--1100},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt088},
  doi          = {10.1093/BIOINFORMATICS/BTT088},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LoboML13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LockD13,
  author       = {Eric F. Lock and
                  David B. Dunson},
  title        = {Bayesian consensus clustering},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2610--2616},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt425},
  doi          = {10.1093/BIOINFORMATICS/BTT425},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LockD13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LongZVFSN13,
  author       = {Quan Long and
                  Qingrun Zhang and
                  Bjarni J. Vilhj{\'{a}}lmsson and
                  Petar Forai and
                  {\"{U}}mit Seren and
                  Magnus Nordborg},
  title        = {JAWAMix5: an out-of-core HDF5-based java implementation of whole-genome
                  association studies using mixed models},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1220--1222},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt122},
  doi          = {10.1093/BIOINFORMATICS/BTT122},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LongZVFSN13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LopezP13,
  author       = {Daniel Lopez and
                  Florencio Pazos},
  title        = {{COPRED:} prediction of fold, {GO} molecular function and functional
                  residues at the domain level},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1811--1812},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt283},
  doi          = {10.1093/BIOINFORMATICS/BTT283},
  timestamp    = {Sat, 19 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LopezP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LotiaMDBP13,
  author       = {Samad Lotia and
                  Jason Montojo and
                  Yue Dong and
                  Gary D. Bader and
                  Alexander R. Pico},
  title        = {Cytoscape App Store},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {10},
  pages        = {1350--1351},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt138},
  doi          = {10.1093/BIOINFORMATICS/BTT138},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LotiaMDBP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LowM13,
  author       = {Diana H. P. Low and
                  Efthymios Motakis},
  title        = {deltaGseg: macrostate estimation via molecular dynamics simulations
                  and multiscale time series analysis},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2501--2502},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt413},
  doi          = {10.1093/BIOINFORMATICS/BTT413},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LowM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuLODK13,
  author       = {Chen Lu and
                  Jeanne Latourelle and
                  George T. O'Connor and
                  Jos{\'{e}}e Dupuis and
                  Eric D. Kolaczyk},
  title        = {Network-guided sparse regression modeling for detection of gene-by-gene
                  interactions},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {10},
  pages        = {1241--1249},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt139},
  doi          = {10.1093/BIOINFORMATICS/BTT139},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LuLODK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuoB13,
  author       = {Weijun Luo and
                  Cory Brouwer},
  title        = {Pathview: an R/Bioconductor package for pathway-based data integration
                  and visualization},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1830--1831},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt285},
  doi          = {10.1093/BIOINFORMATICS/BTT285},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LuoB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LutzSHVS13,
  author       = {Benjamin Lutz and
                  Claude Sinner and
                  Geertje Heuermann and
                  Abhinav Verma and
                  Alexander Schug},
  title        = {eSBMTools 1.0: enhanced native structure-based modeling tools},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2795--2796},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt478},
  doi          = {10.1093/BIOINFORMATICS/BTT478},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LutzSHVS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaLZYLX13,
  author       = {Qin Ma and
                  Bingqiang Liu and
                  Chuan Zhou and
                  Yanbin Yin and
                  Guojun Li and
                  Ying Xu},
  title        = {An integrated toolkit for accurate prediction and analysis of \emph{cis-}regulatory
                  motifs at a genome scale},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2261--2268},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt397},
  doi          = {10.1093/BIOINFORMATICS/BTT397},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MaLZYLX13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaWZX13,
  author       = {Jianzhu Ma and
                  Sheng Wang and
                  Feng Zhao and
                  Jinbo Xu},
  title        = {Protein threading using context-specific alignment potential},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {257--265},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt210},
  doi          = {10.1093/BIOINFORMATICS/BTT210},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MaWZX13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Magana-MoraAJKACAB13,
  author       = {Arturo Magana{-}Mora and
                  Haitham Ashoor and
                  Boris R. Jankovic and
                  Allan Kamau and
                  Karim Awara and
                  Rajesh Chowdhary and
                  John A. C. Archer and
                  Vladimir B. Bajic},
  title        = {Dragon {TIS} Spotter: an Arabidopsis-derived predictor of translation
                  initiation sites in plants},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {117--118},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts638},
  doi          = {10.1093/BIOINFORMATICS/BTS638},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Magana-MoraAJKACAB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MagocPCLSPTS13,
  author       = {Tanja Magoc and
                  Stephan Pabinger and
                  Stefan Canzar and
                  Xinyue Liu and
                  Qi Su and
                  Daniela Puiu and
                  Luke J. Tallon and
                  Steven L. Salzberg},
  title        = {{GAGE-B:} an evaluation of genome assemblers for bacterial organisms},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1718--1725},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt273},
  doi          = {10.1093/BIOINFORMATICS/BTT273},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MagocPCLSPTS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaguireBWSR13,
  author       = {Eamonn Maguire and
                  Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n and
                  Patricia L. Whetzel and
                  Susanna{-}Assunta Sansone and
                  Philippe Rocca{-}Serra},
  title        = {OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {525--527},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts718},
  doi          = {10.1093/BIOINFORMATICS/BTS718},
  timestamp    = {Thu, 30 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MaguireBWSR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaierAE13,
  author       = {Josef Maier and
                  Alexei A. Adzhubei and
                  Wolfgang Egge{-}Jacobsen},
  title        = {{SAPA} tool: finding protein regions by combination of amino acid
                  composition, scaled profiles, patterns and rules},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2496--2497},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt411},
  doi          = {10.1093/BIOINFORMATICS/BTT411},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MaierAE13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaierZK13,
  author       = {Robert Maier and
                  Ralf Zimmer and
                  Robert K{\"{u}}ffner},
  title        = {A Turing test for artificial expression data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2603--2609},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt438},
  doi          = {10.1093/BIOINFORMATICS/BTT438},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MaierZK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MammanaVC13,
  author       = {Alessandro Mammana and
                  Martin Vingron and
                  Ho{-}Ryun Chung},
  title        = {Inferring nucleosome positions with their histone mark annotation
                  from ChIP data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2547--2554},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt449},
  doi          = {10.1093/BIOINFORMATICS/BTT449},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MammanaVC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ManyamICC13,
  author       = {Ganiraju Manyam and
                  Cristina Ivan and
                  George A. Calin and
                  Kevin R. Coombes},
  title        = {targetHub: a programmable interface for miRNA-gene interactions},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2657--2658},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt439},
  doi          = {10.1093/BIOINFORMATICS/BTT439},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ManyamICC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarianiBBS13,
  author       = {Valerio Mariani and
                  Marco Biasini and
                  Alessandro Barbato and
                  Torsten Schwede},
  title        = {lDDT: a local superposition-free score for comparing protein structures
                  and models using distance difference tests},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2722--2728},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt473},
  doi          = {10.1093/BIOINFORMATICS/BTT473},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MarianiBBS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarkovitsBTWDG13,
  author       = {Alexei Nordell Markovits and
                  Charles Joly Beauparlant and
                  Dominique Toupin and
                  Shengrui Wang and
                  Arnaud Droit and
                  Nicolas Gevry},
  title        = {{NGS++:} a library for rapid prototyping of epigenomics software tools},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {15},
  pages        = {1893--1894},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt312},
  doi          = {10.1093/BIOINFORMATICS/BTT312},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MarkovitsBTWDG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarschallHS13,
  author       = {Tobias Marschall and
                  Iman Hajirasouliha and
                  Alexander Sch{\"{o}}nhuth},
  title        = {{MATE-CLEVER:} Mendelian-inheritance-aware discovery and genotyping
                  of midsize and long indels},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3143--3150},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt556},
  doi          = {10.1093/BIOINFORMATICS/BTT556},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MarschallHS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MasuzzoHHATM13,
  author       = {Paola Masuzzo and
                  Niels Hulstaert and
                  Lynn Huyck and
                  Christophe Ampe and
                  Marleen Van Troys and
                  Lennart Martens},
  title        = {CellMissy: a tool for management, storage and analysis of cell migration
                  data produced in wound healing-like assays},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2661--2663},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt437},
  doi          = {10.1093/BIOINFORMATICS/BTT437},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MasuzzoHHATM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MatlockZS13,
  author       = {Matthew K. Matlock and
                  Jed Zaretzki and
                  S. Joshua Swamidass},
  title        = {Scaffold network generator: a tool for mining molecular structures},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2655--2656},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt448},
  doi          = {10.1093/BIOINFORMATICS/BTT448},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MatlockZS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MatsutaIT13,
  author       = {Yoshihiko Matsuta and
                  Masahiro Ito and
                  Yukako Tohsato},
  title        = {{ECOH:} An Enzyme Commission number predictor using mutual information
                  and a support vector machine},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {365--372},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts700},
  doi          = {10.1093/BIOINFORMATICS/BTS700},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MatsutaIT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MayJS13,
  author       = {John W. May and
                  A. Gordon James and
                  Christoph Steinbeck},
  title        = {Metingear: a development environment for annotating genome-scale metabolic
                  models},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2213--2215},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt342},
  doi          = {10.1093/BIOINFORMATICS/BTT342},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MayJS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MazurHGLK13,
  author       = {Adam Mazur and
                  Bj{\"{o}}rn Hammesfahr and
                  Christian Griesinger and
                  Donghan Lee and
                  Martin Kollmar},
  title        = {ShereKhan - calculating exchange parameters in relaxation dispersion
                  data from {CPMG} experiments},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1819--1820},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt286},
  doi          = {10.1093/BIOINFORMATICS/BTT286},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MazurHGLK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/McClellanMSS13,
  author       = {Elizabeth A. McClellan and
                  Perry D. Moerland and
                  Peter J. van der Spek and
                  Andrew Stubbs},
  title        = {NetWeAvers: an \emph{R} package for integrative biological network
                  analysis with mass spectrometry data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2946--2947},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt513},
  doi          = {10.1093/BIOINFORMATICS/BTT513},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/McClellanMSS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/McCoyGHM13,
  author       = {Connor McCoy and
                  Aaron Gallagher and
                  Noah G. Hoffman and
                  Frederick A. Matsen IV},
  title        = {nestly - a framework for running software with nested parameter choices
                  and aggregating results},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {387--388},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts696},
  doi          = {10.1093/BIOINFORMATICS/BTS696},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/McCoyGHM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/McDavidFCDLMRG13,
  author       = {Andrew McDavid and
                  Greg Finak and
                  Pratip K. Chattopadhyay and
                  Maria Dominguez and
                  Laurie Lamoreaux and
                  Steven S. Ma and
                  Mario Roederer and
                  Raphael Gottardo},
  title        = {Data exploration, quality control and testing in single-cell qPCR-based
                  gene expression experiments},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {461--467},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts714},
  doi          = {10.1093/BIOINFORMATICS/BTS714},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/McDavidFCDLMRG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/McGowanHHT13,
  author       = {Simon J. McGowan and
                  Jim R. Hughes and
                  Zong{-}Pei Han and
                  Stephen Taylor},
  title        = {{MIG:} Multi-Image Genome viewer},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2477--2478},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt406},
  doi          = {10.1093/BIOINFORMATICS/BTT406},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/McGowanHHT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MedlarGSBK13,
  author       = {Alan Medlar and
                  Dorota Glowacka and
                  Horia Stanescu and
                  Kevin Bryson and
                  Robert Kleta},
  title        = {SwiftLink: parallel {MCMC} linkage analysis using multicore {CPU}
                  and {GPU}},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {413--419},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts704},
  doi          = {10.1093/BIOINFORMATICS/BTS704},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MedlarGSBK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MehdiSKBB13,
  author       = {Ahmed M. Mehdi and
                  Muhammad Shoaib B. Sehgal and
                  Bostjan Kobe and
                  Timothy L. Bailey and
                  Mikael Bod{\'{e}}n},
  title        = {DLocalMotif: a discriminative approach for discovering local motifs
                  in protein sequences},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {39--46},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts654},
  doi          = {10.1093/BIOINFORMATICS/BTS654},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MehdiSKBB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MeiKYLZ13,
  author       = {Jian{-}Ping Mei and
                  Chee Keong Kwoh and
                  Peng Yang and
                  Xiaoli Li and
                  Jie Zheng},
  title        = {Drug-target interaction prediction by learning from local information
                  and neighbors},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {238--245},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts670},
  doi          = {10.1093/BIOINFORMATICS/BTS670},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MeiKYLZ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MendesLCMBC13,
  author       = {Nuno D. Mendes and
                  Fr{\'{e}}d{\'{e}}ric Lang and
                  Yves{-}Stan Le Cornec and
                  Radu Mateescu and
                  Gr{\'{e}}gory Batt and
                  Claudine Chaouiya},
  title        = {Composition and abstraction of logical regulatory modules: application
                  to multicellular systems},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {749--757},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt033},
  doi          = {10.1093/BIOINFORMATICS/BTT033},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MendesLCMBC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MenelaouM13,
  author       = {Androniki Menelaou and
                  Jonathan Marchini},
  title        = {Genotype calling and phasing using next-generation sequencing reads
                  and a haplotype scaffold},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {84--91},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts632},
  doi          = {10.1093/BIOINFORMATICS/BTS632},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MenelaouM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MengCRCH13,
  author       = {Jia Meng and
                  Xiaodong Cui and
                  Manjeet K. Rao and
                  Yidong Chen and
                  Yufei Huang},
  title        = {Exome-based analysis for {RNA} epigenome sequencing data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {12},
  pages        = {1565--1567},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt171},
  doi          = {10.1093/BIOINFORMATICS/BTT171},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MengCRCH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MergetZMS13,
  author       = {Benjamin Merget and
                  David Zilian and
                  Tobias M{\"{u}}ller and
                  Christoph A. Sotriffer},
  title        = {MycPermCheck: the \emph{Mycobacterium tuberculosis} permeability prediction
                  tool for small molecules},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {62--68},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts641},
  doi          = {10.1093/BIOINFORMATICS/BTS641},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MergetZMS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MeyerDWY13,
  author       = {Michael J. Meyer and
                  Jishnu Das and
                  Xiujuan Wang and
                  Haiyuan Yu},
  title        = {INstruct: a database of high-quality 3D structurally resolved protein
                  interactome networks},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {12},
  pages        = {1577--1579},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt181},
  doi          = {10.1093/BIOINFORMATICS/BTT181},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MeyerDWY13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MillerAMM13,
  author       = {Chase A. Miller and
                  Jon S. Anthony and
                  Michelle M. Meyer and
                  Gabor T. Marth},
  title        = {Scribl: an {HTML5} Canvas-based graphics library for visualizing genomic
                  data over the web},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {381--383},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts677},
  doi          = {10.1093/BIOINFORMATICS/BTS677},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MillerAMM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MillsP13,
  author       = {Lauren J. Mills and
                  William R. Pearson},
  title        = {Adjusting scoring matrices to correct overextended alignments},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {3007--3013},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt517},
  doi          = {10.1093/BIOINFORMATICS/BTT517},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MillsP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MinasCM13,
  author       = {Christopher Minas and
                  Edward W. J. Curry and
                  Giovanni Montana},
  title        = {A distance-based test of association between paired heterogeneous
                  genomic data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2555--2563},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt450},
  doi          = {10.1093/BIOINFORMATICS/BTT450},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MinasCM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MirabelloP13,
  author       = {Claudio Mirabello and
                  Gianluca Pollastri},
  title        = {Porter, PaleAle 4.0: high-accuracy prediction of protein secondary
                  structure and relative solvent accessibility},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {2056--2058},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt344},
  doi          = {10.1093/BIOINFORMATICS/BTT344},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MirabelloP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MiwaORRKPA13,
  author       = {Makoto Miwa and
                  Tomoko Ohta and
                  Rafal Rak and
                  Andrew Rowley and
                  Douglas B. Kell and
                  Sampo Pyysalo and
                  Sophia Ananiadou},
  title        = {A method for integrating and ranking the evidence for biochemical
                  pathways by mining reactions from text},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {44--52},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt227},
  doi          = {10.1093/BIOINFORMATICS/BTT227},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MiwaORRKPA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MonzonJFP13,
  author       = {Alexander Miguel Monzon and
                  Ezequiel I. Juritz and
                  Mar{\'{\i}}a Silvina Fornasari and
                  Gustavo D. Parisi},
  title        = {CoDNaS: a database of conformational diversity in the native state
                  of proteins},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2512--2514},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt405},
  doi          = {10.1093/BIOINFORMATICS/BTT405},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MonzonJFP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MoonJKHHLPK13,
  author       = {Sanghoon Moon and
                  Kwang Su Jung and
                  Young Jin Kim and
                  Mi Yeong Hwang and
                  Kyungsook Han and
                  Jong{-}Young Lee and
                  Kiejung Park and
                  Bong{-}Jo Kim},
  title        = {{KGVDB:} a population-based genomic map of CNVs tagged by SNPs in
                  Koreans},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1481--1483},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt173},
  doi          = {10.1093/BIOINFORMATICS/BTT173},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MoonJKHHLPK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MooneyHHPS13,
  author       = {Catherine Mooney and
                  Niall J. Haslam and
                  Th{\'{e}}r{\`{e}}se A. Holton and
                  Gianluca Pollastri and
                  Denis C. Shields},
  title        = {PeptideLocator: prediction of bioactive peptides in protein sequences},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1120--1126},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt103},
  doi          = {10.1093/BIOINFORMATICS/BTT103},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MooneyHHPS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MoralesG13,
  author       = {Hern{\'{a}}n F. Morales and
                  Guillermo Giovambattista},
  title        = {BioSmalltalk: a pure object system and library for bioinformatics},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2355--2356},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt398},
  doi          = {10.1093/BIOINFORMATICS/BTT398},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MoralesG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MordeletHHEG13,
  author       = {Fantine Mordelet and
                  John Horton and
                  Alexander J. Hartemink and
                  Barbara E. Engelhardt and
                  Raluca Gord{\^{a}}n},
  title        = {Stability selection for regression-based models of transcription factor-DNA
                  binding specificity},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {117--125},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt221},
  doi          = {10.1093/BIOINFORMATICS/BTT221},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MordeletHHEG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Moreno-HagelsiebWWE13,
  author       = {Gabriel Moreno{-}Hagelsieb and
                  Zilin Wang and
                  Stephanie Walsh and
                  Aisha ElSherbiny},
  title        = {Phylogenomic clustering for selecting non-redundant genomes for comparative
                  genomics},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {7},
  pages        = {947--949},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt064},
  doi          = {10.1093/BIOINFORMATICS/BTT064},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Moreno-HagelsiebWWE13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Moya-GarciaR13,
  author       = {Aurelio A. Moya{-}Garc{\'{\i}}a and
                  Juan A. G. Ranea},
  title        = {Insights into polypharmacology from drug-domain associations},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {1934--1937},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt321},
  doi          = {10.1093/BIOINFORMATICS/BTT321},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Moya-GarciaR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MullerB13,
  author       = {Arne C. M{\"{u}}ller and
                  Alexander Bockmayr},
  title        = {Fast thermodynamically constrained flux variability analysis},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {7},
  pages        = {903--909},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt059},
  doi          = {10.1093/BIOINFORMATICS/BTT059},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MullerB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MullerRWKKR13,
  author       = {S{\"{o}}ren M{\"{u}}ller and
                  Lukas Rycak and
                  Peter Winter and
                  G{\"{u}}nter Kahl and
                  Ina Koch and
                  Bj{\"{o}}rn Rotter},
  title        = {omiRas: a Web server for differential expression analysis of miRNAs
                  derived from small RNA-Seq data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2651--2652},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt457},
  doi          = {10.1093/BIOINFORMATICS/BTT457},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MullerRWKKR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MurieBLN13,
  author       = {Carl Murie and
                  Caroline Barette and
                  Laurence Lafanech{\`{e}}re and
                  Robert Nadon},
  title        = {Single assay-wide variance experimental {(SAVE)} design for high-throughput
                  screening},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {3067--3072},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt538},
  doi          = {10.1093/BIOINFORMATICS/BTT538},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MurieBLN13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NaeemRP13,
  author       = {Raeece Naeem and
                  Mamoon Rashid and
                  Arnab Pain},
  title        = {{READSCAN:} a fast and scalable pathogen discovery program with accurate
                  genome relative abundance estimation},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {391--392},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts684},
  doi          = {10.1093/BIOINFORMATICS/BTS684},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/NaeemRP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NagasakiFSSI0M13,
  author       = {Masao Nagasaki and
                  Andr{\'{e}} Fujita and
                  Yayoi Sekiya and
                  Ayumu Saito and
                  Emi Ikeda and
                  Chen Li and
                  Satoru Miyano},
  title        = {XiP: a computational environment to create, extend and share workflows},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {137--139},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts630},
  doi          = {10.1093/BIOINFORMATICS/BTS630},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/NagasakiFSSI0M13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NariaiHKN13,
  author       = {Naoki Nariai and
                  Osamu Hirose and
                  Kaname Kojima and
                  Masao Nagasaki},
  title        = {{TIGAR:} transcript isoform abundance estimation method with gapped
                  alignment of RNA-Seq data by variational Bayesian inference},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2292--2299},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt381},
  doi          = {10.1093/BIOINFORMATICS/BTT381},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/NariaiHKN13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NavarroG13,
  author       = {F{\'{a}}bio C. P. Navarro and
                  Pedro A. F. Galante},
  title        = {RCPedia: a database of retrocopied genes},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1235--1237},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt104},
  doi          = {10.1093/BIOINFORMATICS/BTT104},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/NavarroG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NavlakhaSBB13,
  author       = {Saket Navlakha and
                  Joseph Suhan and
                  Alison L. Barth and
                  Ziv Bar{-}Joseph},
  title        = {A high-throughput framework to detect synapses in electron microscopy
                  images},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {9--17},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt222},
  doi          = {10.1093/BIOINFORMATICS/BTT222},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/NavlakhaSBB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NavratilPBB13,
  author       = {Vincent Navratil and
                  Cl{\'{e}}ment Pontoizeau and
                  Elise Billoir and
                  Benjamin J. Blaise},
  title        = {{SRV:} an open-source toolbox to accelerate the recovery of metabolic
                  biomarkers and correlations from metabolic phenotyping datasets},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {10},
  pages        = {1348--1349},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt136},
  doi          = {10.1093/BIOINFORMATICS/BTT136},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/NavratilPBB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NawrockiE13,
  author       = {Eric P. Nawrocki and
                  Sean R. Eddy},
  title        = {Infernal 1.1: 100-fold faster {RNA} homology searches},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2933--2935},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt509},
  doi          = {10.1093/BIOINFORMATICS/BTT509},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/NawrockiE13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NeyshaburKHA13,
  author       = {Behnam Neyshabur and
                  Ahmadreza Khadem and
                  Somaye Hashemifar and
                  Seyed Shahriar Arab},
  title        = {{NETAL:} a new graph-based method for global alignment of protein-protein
                  interaction networks},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1654--1662},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt202},
  doi          = {10.1093/BIOINFORMATICS/BTT202},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/NeyshaburKHA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NijkampPRR13,
  author       = {Jurgen F. Nijkamp and
                  Mihai Pop and
                  Marcel J. T. Reinders and
                  Dick de Ridder},
  title        = {Exploring variation-aware contig graphs for (comparative) metagenomics
                  using MaryGold},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2826--2834},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt502},
  doi          = {10.1093/BIOINFORMATICS/BTT502},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/NijkampPRR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NimLCWT13,
  author       = {Tri Hieu Nim and
                  Le Luo and
                  Marie{-}V{\'{e}}ronique Cl{\'{e}}ment and
                  Jacob K. White and
                  Lisa Tucker{-}Kellogg},
  title        = {Systematic parameter estimation in data-rich environments for cell
                  signalling dynamics},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {1044--1051},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt083},
  doi          = {10.1093/BIOINFORMATICS/BTT083},
  timestamp    = {Mon, 08 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/NimLCWT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NocqCGLW13,
  author       = {Julie Nocq and
                  Magalie Celton and
                  Patrick Gendron and
                  S{\'{e}}bastien Lemieux and
                  Brian T. Wilhelm},
  title        = {Harnessing virtual machines to simplify next-generation {DNA} sequencing
                  analysis},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2075--2083},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt352},
  doi          = {10.1093/BIOINFORMATICS/BTT352},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/NocqCGLW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Noivirt-BrikHUO13,
  author       = {Orly Noivirt{-}Brik and
                  Gershon Hazan and
                  Ron Unger and
                  Yanay Ofran},
  title        = {Non-local residue-residue contacts in proteins are more conserved
                  than local ones},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {331--337},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts694},
  doi          = {10.1093/BIOINFORMATICS/BTS694},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Noivirt-BrikHUO13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NoorASNN13,
  author       = {Amina Noor and
                  Aitzaz Ahmad and
                  Erchin Serpedin and
                  Mohamed N. Nounou and
                  Hazem N. Nounou},
  title        = {{ROBNCA:} robust network component analysis for recovering transcription
                  factor activities},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2410--2418},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt433},
  doi          = {10.1093/BIOINFORMATICS/BTT433},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/NoorASNN13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NorambuenaCCM13,
  author       = {Tom{\'{a}}s Norambuena and
                  Jorge F. Cares and
                  Emidio Capriotti and
                  Francisco Melo},
  title        = {WebRASP: a server for computing energy scores to assess the accuracy
                  and stability of {RNA} 3D structures},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2649--2650},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt441},
  doi          = {10.1093/BIOINFORMATICS/BTT441},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/NorambuenaCCM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NordbergBWW13,
  author       = {Henrik Nordberg and
                  Karan Bhatia and
                  Kai Wang and
                  Zhong Wang},
  title        = {BioPig: a Hadoop-based analytic toolkit for large-scale sequence data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {3014--3019},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt528},
  doi          = {10.1093/BIOINFORMATICS/BTT528},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/NordbergBWW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NovakNPSM13,
  author       = {Petr Nov{\'{a}}k and
                  Pavel Neumann and
                  Jir{\'{\i}} Pech and
                  Jaroslav Steinhaisl and
                  Jir{\'{\i}} Macas},
  title        = {RepeatExplorer: a Galaxy-based web server for genome-wide characterization
                  of eukaryotic repetitive elements from next-generation sequence reads},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {792--793},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt054},
  doi          = {10.1093/BIOINFORMATICS/BTT054},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/NovakNPSM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NunesCMO13,
  author       = {Tiago Nunes and
                  David Campos and
                  S{\'{e}}rgio Matos and
                  Jos{\'{e}} Lu{\'{\i}}s Oliveira},
  title        = {BeCAS: biomedical concept recognition services and visualization},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {15},
  pages        = {1915--1916},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt317},
  doi          = {10.1093/BIOINFORMATICS/BTT317},
  timestamp    = {Thu, 02 Dec 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/NunesCMO13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Nystrom-PerssonIIMNYM13,
  author       = {Johan Nystr{\"{o}}m{-}Persson and
                  Yoshinobu Igarashi and
                  Maori Ito and
                  Mizuki Morita and
                  Noriyuki Nakatsu and
                  Hiroshi Yamada and
                  Kenji Mizuguchi},
  title        = {Toxygates: interactive toxicity analysis on a hybrid microarray and
                  linked data platform},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {3080--3086},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt531},
  doi          = {10.1093/BIOINFORMATICS/BTT531},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Nystrom-PerssonIIMNYM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OConnorLWAB13,
  author       = {Patrick B. F. O'Connor and
                  Gene{-}Wei Li and
                  Jonathan S. Weissman and
                  John F. Atkins and
                  Pavel V. Baranov},
  title        = {rRNA: mRNA pairing alters the length and the symmetry of mRNA-protected
                  fragments in ribosome profiling experiments},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {12},
  pages        = {1488--1491},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt184},
  doi          = {10.1093/BIOINFORMATICS/BTT184},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/OConnorLWAB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OFallonWC13,
  author       = {Brendan D. O'Fallon and
                  Whitney Wooderchak{-}Donahue and
                  David K. Crockett},
  title        = {A support vector machine for identification of single-nucleotide polymorphisms
                  from next-generation sequencing data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1361--1366},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt172},
  doi          = {10.1093/BIOINFORMATICS/BTT172},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/OFallonWC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OatesHLMM13,
  author       = {Chris J. Oates and
                  Bryan T. J. Hennessy and
                  Yiling Lu and
                  Gordon B. Mills and
                  Sach Mukherjee},
  title        = {Network inference using steady-state data and Goldbeter-Koshland kinetics},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {819},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt057},
  doi          = {10.1093/BIOINFORMATICS/BTT057},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/OatesHLMM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OconeMS13,
  author       = {Andrea Ocone and
                  Andrew J. Millar and
                  Guido Sanguinetti},
  title        = {Hybrid regulatory models: a statistically tractable approach to model
                  regulatory network dynamics},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {7},
  pages        = {910--916},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt069},
  doi          = {10.1093/BIOINFORMATICS/BTT069},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/OconeMS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OehmenB13,
  author       = {Christopher S. Oehmen and
                  Douglas J. Baxter},
  title        = {ScalaBLAST 2.0: rapid and robust {BLAST} calculations on multiprocessor
                  systems},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {797--798},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt013},
  doi          = {10.1093/BIOINFORMATICS/BTT013},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/OehmenB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OlimpieriCTM13,
  author       = {Pier Paolo Olimpieri and
                  Anna Chailyan and
                  Anna Tramontano and
                  Paolo Marcatili},
  title        = {Prediction of site-specific interactions in antibody-antigen complexes:
                  the proABC method and server},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2285--2291},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt369},
  doi          = {10.1093/BIOINFORMATICS/BTT369},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/OlimpieriCTM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OliveiraCM13,
  author       = {Luiz Felipe Valter de Oliveira and
                  Ana Paula Christoff and
                  Rogerio Margis},
  title        = {isomiRID: a framework to identify microRNA isoforms},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2521--2523},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt424},
  doi          = {10.1093/BIOINFORMATICS/BTT424},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/OliveiraCM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OlivellaGPD13,
  author       = {Mireia Olivella and
                  Angel Gonzalez and
                  Leonardo Pardo and
                  Xavier Deup{\'{\i}}},
  title        = {Relation between sequence and structure in membrane proteins},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1589--1592},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt249},
  doi          = {10.1093/BIOINFORMATICS/BTT249},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/OlivellaGPD13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OllionCLEB13,
  author       = {Jean Ollion and
                  Julien Cochennec and
                  Fran{\c{c}}ois Loll and
                  Christophe Escud{\'{e}} and
                  Thomas Boudier},
  title        = {{TANGO:} a generic tool for high-throughput 3D image analysis for
                  studying nuclear organization},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1840--1841},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt276},
  doi          = {10.1093/BIOINFORMATICS/BTT276},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/OllionCLEB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OlshenHSORT13,
  author       = {Adam B. Olshen and
                  Andrew C. Hsieh and
                  Craig R. Stumpf and
                  Richard A. Olshen and
                  Davide Ruggero and
                  Barry S. Taylor},
  title        = {Assessing gene-level translational control from ribosome profiling},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {2995--3002},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt533},
  doi          = {10.1093/BIOINFORMATICS/BTT533},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/OlshenHSORT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OnoAH13,
  author       = {Yukiteru Ono and
                  Kiyoshi Asai and
                  Michiaki Hamada},
  title        = {{PBSIM:} PacBio reads simulator - toward accurate genome assembly},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {119--121},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts649},
  doi          = {10.1093/BIOINFORMATICS/BTS649},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/OnoAH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OrensteinS13,
  author       = {Yaron Orenstein and
                  Ron Shamir},
  title        = {Design of shortest double-stranded {DNA} sequences covering all \emph{k}-mers
                  with applications to protein-binding microarrays and synthetic enhancers},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {71--79},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt230},
  doi          = {10.1093/BIOINFORMATICS/BTT230},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/OrensteinS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PaciniIGIKBS13,
  author       = {Clare Pacini and
                  Francesco Iorio and
                  Emanuel J. V. Gon{\c{c}}alves and
                  Murat Iskar and
                  Thomas Klabunde and
                  Peer Bork and
                  Julio Saez{-}Rodriguez},
  title        = {DvD: An R/Cytoscape pipeline for drug repurposing using public repositories
                  of gene expression data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {132--134},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts656},
  doi          = {10.1093/BIOINFORMATICS/BTS656},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PaciniIGIKBS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PagniNPDXGSGG13,
  author       = {Marco Pagni and
                  H{\'{e}}l{\`{e}}ne Niculita{-}Hirzel and
                  Lo{\"{\i}}c Pellissier and
                  Anne Dubuis and
                  Ioannis Xenarios and
                  Antoine Guisan and
                  Ian R. Sanders and
                  J{\'{e}}r{\^{o}}me Goudet and
                  Nicolas Guex},
  title        = {Density-based hierarchical clustering of pyro-sequences on a large
                  scale - the case of fungal {ITS1}},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {10},
  pages        = {1268--1274},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt149},
  doi          = {10.1093/BIOINFORMATICS/BTT149},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PagniNPDXGSGG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PakR13,
  author       = {Theodore R. Pak and
                  Frederick P. Roth},
  title        = {ChromoZoom: a flexible, fluid, web-based genome browser},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {384--386},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts695},
  doi          = {10.1093/BIOINFORMATICS/BTS695},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PakR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PalamaraP13,
  author       = {Pier Francesco Palamara and
                  Itsik Pe'er},
  title        = {Inference of historical migration rates via haplotype sharing},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {180--188},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt239},
  doi          = {10.1093/BIOINFORMATICS/BTT239},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PalamaraP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PandiniFFK13,
  author       = {Alessandro Pandini and
                  Arianna Fornili and
                  Franca Fraternali and
                  Jens Kleinjung},
  title        = {GSATools: analysis of allosteric communication and functional local
                  motions using a structural alphabet},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {2053--2055},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt326},
  doi          = {10.1093/BIOINFORMATICS/BTT326},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PandiniFFK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParedesMS13,
  author       = {Sur Herrera Paredes and
                  Michael F. Melgar and
                  Praveen Sethupathy},
  title        = {Promoter-proximal CCCTC-factor binding is associated with an increase
                  in the transcriptional pausing index},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {12},
  pages        = {1485--1487},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts596},
  doi          = {10.1093/BIOINFORMATICS/BTS596},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ParedesMS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParkPKKJJKK13,
  author       = {Hae{-}Min Park and
                  Ju{-}Hyeong Park and
                  Yoon{-}Woo Kim and
                  Kyoung{-}Jin Kim and
                  Hee{-}Jin Jeong and
                  Kyoung{-}Soon Jang and
                  Byung{-}Gee Kim and
                  Yun{-}Gon Kim},
  title        = {The Xeno-glycomics database {(XDB):} a relational database of qualitative
                  and quantitative pig glycome repertoire},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2950--2952},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt504},
  doi          = {10.1093/BIOINFORMATICS/BTT504},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ParkPKKJJKK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PasaniucSTGZERCFARCMHRHBH13,
  author       = {Bogdan Pasaniuc and
                  Sriram Sankararaman and
                  Dara G. Torgerson and
                  Christopher Gignoux and
                  Noah Zaitlen and
                  Celeste Eng and
                  William Rodriguez{-}Cintron and
                  Rocio Chapela and
                  Jean G. Ford and
                  Pedro C. Avila and
                  Jose Rodriguez{-}Santana and
                  Gary K. Chen and
                  Loic Le Marchand and
                  Brian E. Henderson and
                  David Reich and
                  Christopher A. Haiman and
                  Esteban Gonz{\`{a}}lez Burchard and
                  Eran Halperin},
  title        = {Analysis of Latino populations from {GALA} and {MEC} studies reveals
                  genomic loci with biased local ancestry estimation},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1407--1415},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt166},
  doi          = {10.1093/BIOINFORMATICS/BTT166},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PasaniucSTGZERCFARCMHRHBH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PatroK13,
  author       = {Rob Patro and
                  Carl Kingsford},
  title        = {Predicting protein interactions via parsimonious network history inference},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {237--246},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt224},
  doi          = {10.1093/BIOINFORMATICS/BTT224},
  timestamp    = {Tue, 03 Nov 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PatroK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PaullCNSHS13,
  author       = {Evan O. Paull and
                  Daniel E. Carlin and
                  Mario Niepel and
                  Peter K. Sorger and
                  David Haussler and
                  Joshua M. Stuart},
  title        = {Discovering causal pathways linking genomic events to transcriptional
                  states using Tied Diffusion Through Interacting Events (TieDIE)},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2757--2764},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt471},
  doi          = {10.1093/BIOINFORMATICS/BTT471},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PaullCNSHS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PavlichinWY13,
  author       = {Dmitri S. Pavlichin and
                  Tsachy Weissman and
                  Golan Yona},
  title        = {The human genome contracts again},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2199--2202},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt362},
  doi          = {10.1093/BIOINFORMATICS/BTT362},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PavlichinWY13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PearsonC13,
  author       = {Joseph C. Pearson and
                  Stephen T. Crews},
  title        = {Twine: display and analysis of \emph{cis}-regulatory modules},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1690--1692},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt264},
  doi          = {10.1093/BIOINFORMATICS/BTT264},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PearsonC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PedersenYD13,
  author       = {Brent S. Pedersen and
                  Ivana V. Yang and
                  Subhajyoti De},
  title        = {CruzDB: software for annotation of genomic intervals with {UCSC} genome-browser
                  database},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {3003--3006},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt534},
  doi          = {10.1093/BIOINFORMATICS/BTT534},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PedersenYD13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengCMRCCGF13,
  author       = {Bo Peng and
                  Huann{-}Sheng Chen and
                  Leah E. Mechanic and
                  Ben Racine and
                  John Clarke and
                  Lauren Clarke and
                  Elizabeth Gillanders and
                  Eric J. Feuer},
  title        = {Genetic Simulation Resources: a website for the registration and discovery
                  of genetic data simulators},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {1101--1102},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt094},
  doi          = {10.1093/BIOINFORMATICS/BTT094},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PengCMRCCGF13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengLYLZC13,
  author       = {Yu Peng and
                  Henry C. M. Leung and
                  Siu{-}Ming Yiu and
                  Ming{-}Ju Lv and
                  Xin{-}Guang Zhu and
                  Francis Y. L. Chin},
  title        = {IDBA-tran: a more robust de novo de Bruijn graph assembler for transcriptomes
                  with uneven expression levels},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {326--334},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt219},
  doi          = {10.1093/BIOINFORMATICS/BTT219},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PengLYLZC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PerreaultPLBD13,
  author       = {Louis{-}Philippe Lemieux Perreault and
                  Sylvie Provost and
                  Marc{-}Andr{\'{e}} Legault and
                  Amina Barhdadi and
                  Marie{-}Pierre Dub{\'{e}}},
  title        = {pyGenClean: efficient tool for genetic data clean up before association
                  testing},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1704--1705},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt261},
  doi          = {10.1093/BIOINFORMATICS/BTT261},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PerreaultPLBD13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PervouchineKG13,
  author       = {Dmitri D. Pervouchine and
                  David G. Knowles and
                  Roderic Guig{\'{o}}},
  title        = {Intron-centric estimation of alternative splicing from RNA-seq data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {273--274},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts678},
  doi          = {10.1093/BIOINFORMATICS/BTS678},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PervouchineKG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PetukhKA13,
  author       = {Marharyta Petukh and
                  Taylor Kimmet and
                  Emil Alexov},
  title        = {{BION} web server: predicting non-specifically bound surface ions},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {805--806},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt032},
  doi          = {10.1093/BIOINFORMATICS/BTT032},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PetukhKA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PicardiP13,
  author       = {Ernesto Picardi and
                  Graziano Pesole},
  title        = {REDItools: high-throughput {RNA} editing detection made easy},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1813--1814},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt287},
  doi          = {10.1093/BIOINFORMATICS/BTT287},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PicardiP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PiechottaD13,
  author       = {Michael Piechotta and
                  Christoph Dieterich},
  title        = {{ACCUSA2:} multi-purpose {SNV} calling enhanced by probabilistic integration
                  of quality scores},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1809--1810},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt268},
  doi          = {10.1093/BIOINFORMATICS/BTT268},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PiechottaD13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PietzschPTS13,
  author       = {Tobias Pietzsch and
                  Stephan Preibisch and
                  Pavel Tomancak and
                  Stephan Saalfeld},
  title        = {ImgLib2 - generic image processing in Java},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {298},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts685},
  doi          = {10.1093/BIOINFORMATICS/BTS685},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PietzschPTS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PiresMSCM13,
  author       = {Douglas E. V. Pires and
                  Raquel Cardoso de Melo Minardi and
                  Carlos Henrique da Silveira and
                  Frederico F. Campos and
                  Wagner Meira Jr.},
  title        = {aCSM: noise-free graph-based signatures to large-scale receptor-based
                  ligand prediction},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {7},
  pages        = {855--861},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt058},
  doi          = {10.1093/BIOINFORMATICS/BTT058},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PiresMSCM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PiroMCEK13,
  author       = {Rosario M. Piro and
                  Ivan Molineris and
                  Ferdinando Di Cunto and
                  Roland Eils and
                  Rainer K{\"{o}}nig},
  title        = {Disease-gene discovery by integration of 3D gene expression and transcription
                  factor binding affinities},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {468--475},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts720},
  doi          = {10.1093/BIOINFORMATICS/BTS720},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PiroMCEK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Planas-IglesiasMBGO13,
  author       = {Joan Planas{-}Iglesias and
                  Manuel Alejandro Mar{\'{\i}}n{-}L{\'{o}}pez and
                  Jaume Bonet and
                  Javier Garc{\'{\i}}a{-}Garc{\'{\i}}a and
                  Baldo Oliva},
  title        = {iLoops: a protein-protein interaction prediction server based on structural
                  features},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2360--2362},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt401},
  doi          = {10.1093/BIOINFORMATICS/BTT401},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Planas-IglesiasMBGO13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PoirelRRKAM13,
  author       = {Christopher L. Poirel and
                  Ahsanur Rahman and
                  Richard R. Rodrigues and
                  Arjun Krishnan and
                  Jacqueline R. Addesa and
                  T. M. Murali},
  title        = {Reconciling differential gene expression data with molecular interaction
                  networks},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {622--629},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt007},
  doi          = {10.1093/BIOINFORMATICS/BTT007},
  timestamp    = {Wed, 27 Dec 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PoirelRRKAM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PopDGRCMO13,
  author       = {Sorin Pop and
                  Alexandre Dufour and
                  Jean{-}Francois Le Garrec and
                  Chiara V. Ragni and
                  Cl{\'{e}}mire Cimper and
                  Sigolene M. Meilhac and
                  Jean{-}Christophe Olivo{-}Marin},
  title        = {Extracting 3D cell parameters from dense tissue environments: application
                  to the development of the mouse heart},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {772--779},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt027},
  doi          = {10.1093/BIOINFORMATICS/BTT027},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PopDGRCMO13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PorterB13,
  author       = {Michael S. Porter and
                  Robert G. Beiko},
  title        = {{SPANNER:} taxonomic assignment of sequences using pyramid matching
                  of similarity profiles},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {15},
  pages        = {1858--1864},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt313},
  doi          = {10.1093/BIOINFORMATICS/BTT313},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PorterB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PoundsCLLZM13,
  author       = {Stan Pounds and
                  Cheng Cheng and
                  Shaoyu Li and
                  Zhifa Liu and
                  Jinghui Zhang and
                  Charles Mullighan},
  title        = {A genomic random interval model for statistical analysis of genomic
                  lesion data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2088--2095},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt372},
  doi          = {10.1093/BIOINFORMATICS/BTT372},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PoundsCLLZM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PowellS13,
  author       = {David R. Powell and
                  Torsten Seemann},
  title        = {{VAGUE:} a graphical user interface for the Velvet assembler},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {264--265},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts664},
  doi          = {10.1093/BIOINFORMATICS/BTS664},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PowellS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PronkPSLBASSKSHL13,
  author       = {Sander Pronk and
                  Szil{\'{a}}rd P{\'{a}}ll and
                  Roland Schulz and
                  Per Larsson and
                  P{\"{a}}r Bjelkmar and
                  Rossen Apostolov and
                  Michael R. Shirts and
                  Jeremy C. Smith and
                  Peter M. Kasson and
                  David van der Spoel and
                  Berk Hess and
                  Erik Lindahl},
  title        = {{GROMACS} 4.5: a high-throughput and highly parallel open source molecular
                  simulation toolkit},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {7},
  pages        = {845--854},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt055},
  doi          = {10.1093/BIOINFORMATICS/BTT055},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PronkPSLBASSKSHL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Pruteanu-MaliniciMO13,
  author       = {Iulian Pruteanu{-}Malinici and
                  William H. Majoros and
                  Uwe Ohler},
  title        = {Automated annotation of gene expression image sequences via non-parametric
                  factor analysis and conditional random fields},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {27--35},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt206},
  doi          = {10.1093/BIOINFORMATICS/BTT206},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Pruteanu-MaliniciMO13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PrzydzialBKVS13,
  author       = {Magdalena Przydzial and
                  Barun Bhhatarai and
                  Amar Koleti and
                  Uma Vempati and
                  Stephan C. Sch{\"{u}}rer},
  title        = {{GPCR} ontology: development and application of a {G} protein-coupled
                  receptor pharmacology knowledge framework},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3211--3219},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt565},
  doi          = {10.1093/BIOINFORMATICS/BTT565},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PrzydzialBKVS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PurdomHGQCS13,
  author       = {Elizabeth Purdom and
                  Christine Ho and
                  Catherine S. Grasso and
                  Michael Quist and
                  Raymond J. Cho and
                  Paul T. Spellman},
  title        = {Methods and challenges in timing chromosomal abnormalities within
                  cancer samples},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3113--3120},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt546},
  doi          = {10.1093/BIOINFORMATICS/BTT546},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PurdomHGQCS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/QuZSHS13,
  author       = {Jianghan Qu and
                  Meng Zhou and
                  Qiang Song and
                  Elizabeth E. Hong and
                  Andrew D. Smith},
  title        = {{MLML:} consistent simultaneous estimates of {DNA} methylation and
                  hydroxymethylation},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2645--2646},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt459},
  doi          = {10.1093/BIOINFORMATICS/BTT459},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/QuZSHS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RaczyPSCKMCKKLLST13,
  author       = {Come Raczy and
                  Roman Petrovski and
                  Christopher T. Saunders and
                  Ilya Chorny and
                  Semyon Kruglyak and
                  Elliott H. Margulies and
                  Han{-}Yu Chuang and
                  Morten K{\"{a}}llberg and
                  Swathi A. Kumar and
                  Arnold Liao and
                  Kristina M. Little and
                  Michael P. Str{\"{o}}mberg and
                  Stephen W. Tanner},
  title        = {Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing
                  platforms},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {2041--2043},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt314},
  doi          = {10.1093/BIOINFORMATICS/BTT314},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RaczyPSCKMCKKLLST13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RajaramanTC13,
  author       = {Ashok Rajaraman and
                  Eric Tannier and
                  C{\'{e}}dric Chauve},
  title        = {{FPSAC:} fast phylogenetic scaffolding of ancient contigs},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {2987--2994},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt527},
  doi          = {10.1093/BIOINFORMATICS/BTT527},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RajaramanTC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RakitschLSB13,
  author       = {Barbara Rakitsch and
                  Christoph Lippert and
                  Oliver Stegle and
                  Karsten M. Borgwardt},
  title        = {A Lasso multi-marker mixed model for association mapping with population
                  structure correction},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {206--214},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts669},
  doi          = {10.1093/BIOINFORMATICS/BTS669},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RakitschLSB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RamachandranPPP13,
  author       = {Parameswaran Ramachandran and
                  Gareth A. Palidwor and
                  Christopher J. Porter and
                  Theodore J. Perkins},
  title        = {MaSC: mappability-sensitive cross-correlation for estimating mean
                  fragment length of single-end short-read sequencing data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {444--450},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt001},
  doi          = {10.1093/BIOINFORMATICS/BTT001},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RamachandranPPP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RashidRRA13,
  author       = {Mamunur Rashid and
                  Carla Daniela Robles{-}Espinoza and
                  Alistair G. Rust and
                  David J. Adams},
  title        = {Cake: a bioinformatics pipeline for the integrated analysis of somatic
                  variants in cancer genomes},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2208--2210},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt371},
  doi          = {10.1093/BIOINFORMATICS/BTT371},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RashidRRA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RastasPHLA13,
  author       = {Pasi Rastas and
                  Lars Paulin and
                  Ilkka Hanski and
                  Rainer Lehtonen and
                  Petri Auvinen},
  title        = {Lep-MAP: fast and accurate linkage map construction for large {SNP}
                  datasets},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3128--3134},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt563},
  doi          = {10.1093/BIOINFORMATICS/BTT563},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RastasPHLA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RatheJSEWPOL13,
  author       = {Susan K. Rathe and
                  James E. Johnson and
                  Kevin A. T. Silverstein and
                  Jesse J. Erdmann and
                  Adrienne L. Watson and
                  Flavia E. Popescu and
                  John R. Ohlfest and
                  David A. Largaespada},
  title        = {MMuFLR: missense mutation and frameshift location reporter},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2353--2354},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt385},
  doi          = {10.1093/BIOINFORMATICS/BTT385},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RatheJSEWPOL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RauGCJ13,
  author       = {Andrea Rau and
                  M{\'{e}}lina Gallopin and
                  Gilles Celeux and
                  Florence Jaffr{\'{e}}zic},
  title        = {Data-based filtering for replicated high-throughput transcriptome
                  sequencing experiments},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2146--2152},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt350},
  doi          = {10.1093/BIOINFORMATICS/BTT350},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RauGCJ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ReeseATAVAKE13,
  author       = {Sarah E. Reese and
                  Kellie J. Archer and
                  Terry M. Therneau and
                  Elizabeth J. Atkinson and
                  Celine M. Vachon and
                  Mariza de Andrade and
                  Jean{-}Pierre A. Kocher and
                  Jeanette E. Eckel{-}Passow},
  title        = {A new statistic for identifying batch effects in high-throughput genomic
                  data that uses guided principal component analysis},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2877--2883},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt480},
  doi          = {10.1093/BIOINFORMATICS/BTT480},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ReeseATAVAKE13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ReifSLWWCJR13,
  author       = {David M. Reif and
                  Myroslav Sypa and
                  Eric F. Lock and
                  Fred A. Wright and
                  Ander Wilson and
                  Tommy Cathey and
                  Richard S. Judson and
                  Ivan Rusyn},
  title        = {ToxPi {GUI:} an interactive visualization tool for transparent integration
                  of data from diverse sources of evidence},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {402--403},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts686},
  doi          = {10.1093/BIOINFORMATICS/BTS686},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ReifSLWWCJR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ReinharzPW13,
  author       = {Vladimir Reinharz and
                  Yann Ponty and
                  J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl},
  title        = {A weighted sampling algorithm for the design of {RNA} sequences with
                  targeted secondary structure and nucleotide distribution},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {308--315},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt217},
  doi          = {10.1093/BIOINFORMATICS/BTT217},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ReinharzPW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ReisfeldILWRM13,
  author       = {Brad Reisfeld and
                  Jaime H. Ivy and
                  Michael A. Lyons and
                  Jesse M. Wright and
                  Justin L. Rogers and
                  Arthur N. Mayeno},
  title        = {DoseSim: a tool for pharmacokinetic/pharmacodynamic analysis and dose
                  reconstruction},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {400--401},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts671},
  doi          = {10.1093/BIOINFORMATICS/BTS671},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ReisfeldILWRM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ReizKPM13,
  author       = {Be{\'{a}}ta Reiz and
                  Attila Kert{\'{e}}sz{-}Farkas and
                  S{\'{a}}ndor Pongor and
                  Michael P. Myers},
  title        = {Chemical rule-based filtering of {MS/MS} spectra},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {7},
  pages        = {925--932},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt061},
  doi          = {10.1093/BIOINFORMATICS/BTT061},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ReizKPM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RemeHTK13,
  author       = {Thierry R{\`{e}}me and
                  Dirk Hose and
                  Charles Theillet and
                  Bernard Klein},
  title        = {Modeling risk stratification in human cancer},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1149--1157},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt124},
  doi          = {10.1093/BIOINFORMATICS/BTT124},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RemeHTK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RenL13,
  author       = {Guomin Ren and
                  Zhihua Liu},
  title        = {NetCAD: a network analysis tool for coronary artery disease-associated
                  {PPI} network},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {279--280},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts666},
  doi          = {10.1093/BIOINFORMATICS/BTS666},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RenL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RenSSDR13,
  author       = {Jie Ren and
                  Kai Song and
                  Fengzhu Sun and
                  Minghua Deng and
                  Gesine Reinert},
  title        = {Multiple alignment-free sequence comparison},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2690--2698},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt462},
  doi          = {10.1093/BIOINFORMATICS/BTT462},
  timestamp    = {Thu, 09 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RenSSDR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RenaudKSK13,
  author       = {Gabriel Renaud and
                  Martin Kircher and
                  Udo Stenzel and
                  Janet Kelso},
  title        = {freeIbis: an efficient basecaller with calibrated quality scores for
                  Illumina sequencers},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1208--1209},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt117},
  doi          = {10.1093/BIOINFORMATICS/BTT117},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RenaudKSK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RezolaPFPSRP13,
  author       = {Alberto Rezola and
                  Jon Pey and
                  Luis F. de Figueiredo and
                  Adam Podhorski and
                  Stefan Schuster and
                  Angel Rubio and
                  Francisco J. Planes},
  title        = {Selection of human tissue-specific elementary flux modes using gene
                  expression data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {2009--2016},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt328},
  doi          = {10.1093/BIOINFORMATICS/BTT328},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RezolaPFPSRP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RijlaarsdamRGDL13,
  author       = {Martin A. Rijlaarsdam and
                  David J. Rijlaarsdam and
                  Ad J. M. Gillis and
                  Lambert C. J. Dorssers and
                  Leendert H. J. Looijenga},
  title        = {miMsg: a target enrichment algorithm for predicted miR-mRNA interactions
                  based on relative ranking of matched expression data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1638--1646},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt246},
  doi          = {10.1093/BIOINFORMATICS/BTT246},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RijlaarsdamRGDL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RivasPNGMLKMD13,
  author       = {Manuel A. Rivas and
                  Matti Pirinen and
                  Matthew J. Neville and
                  Kyle J. Gaulton and
                  Loukas Moutsianas and
                  Cecilia M. Lindgren and
                  Fredrik Karpe and
                  Mark I. McCarthy and
                  Peter Donnelly},
  title        = {Assessing association between protein truncating variants and quantitative
                  traits},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2419--2426},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt409},
  doi          = {10.1093/BIOINFORMATICS/BTT409},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RivasPNGMLKMD13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RizkLC13,
  author       = {Guillaume Rizk and
                  Dominique Lavenier and
                  Rayan Chikhi},
  title        = {{DSK:} \emph{k}-mer counting with very low memory usage},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {652--653},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt020},
  doi          = {10.1093/BIOINFORMATICS/BTT020},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RizkLC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RobbinsGDTA13,
  author       = {David E. Robbins and
                  Alexander Gr{\"{u}}neberg and
                  Helena F. Deus and
                  Murat M. Tanik and
                  Jonas S. Almeida},
  title        = {A self-updating road map of The Cancer Genome Atlas},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {10},
  pages        = {1333--1340},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt141},
  doi          = {10.1093/BIOINFORMATICS/BTT141},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RobbinsGDTA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RobertsKPSBSGA13,
  author       = {Nicola D. Roberts and
                  R. Daniel Kortschak and
                  Wendy T. Parker and
                  Andreas W. Schreiber and
                  Susan Branford and
                  Hamish S. Scott and
                  Garique Glonek and
                  David L. Adelson},
  title        = {A comparative analysis of algorithms for somatic {SNV} detection in
                  cancer},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2223--2230},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt375},
  doi          = {10.1093/BIOINFORMATICS/BTT375},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RobertsKPSBSGA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RobertsSP13,
  author       = {Adam Roberts and
                  Lorian Schaeffer and
                  Lior Pachter},
  title        = {Updating RNA-Seq analyses after re-annotation},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1631--1637},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt197},
  doi          = {10.1093/BIOINFORMATICS/BTT197},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RobertsSP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RobertsonHWGBTFPPF13,
  author       = {Charles E. Robertson and
                  J. Kirk Harris and
                  Brandie D. Wagner and
                  David Granger and
                  Kathy Browne and
                  Beth Tatem and
                  Leah M. Feazel and
                  Kristin Park and
                  Norman R. Pace and
                  Daniel N. Frank},
  title        = {Explicet: graphical user interface software for metadata-driven management,
                  analysis and visualization of microbiome data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {3100--3101},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt526},
  doi          = {10.1093/BIOINFORMATICS/BTT526},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RobertsonHWGBTFPPF13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RodchenkovDSB13,
  author       = {Igor V. Rodchenkov and
                  Emek Demir and
                  Chris Sander and
                  Gary D. Bader},
  title        = {The BioPAX Validator},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2659--2660},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt452},
  doi          = {10.1093/BIOINFORMATICS/BTT452},
  timestamp    = {Mon, 26 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RodchenkovDSB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Rodriguez-EstebanL13,
  author       = {Raul Rodriguez{-}Esteban and
                  William Loging},
  title        = {Quantifying the complexity of medical research},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2918--2924},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt505},
  doi          = {10.1093/BIOINFORMATICS/BTT505},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Rodriguez-EstebanL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RohrPYP13,
  author       = {Cristian Oscar Rohr and
                  R. Gonzalo Parra and
                  Patricio Yankilevich and
                  Carolina Perez{-}Castro},
  title        = {{INSECT:} IN-silico SEarch for Co-occurring Transcription factors},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2852--2858},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt506},
  doi          = {10.1093/BIOINFORMATICS/BTT506},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RohrPYP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Rost13,
  author       = {Burkhard Rost},
  title        = {{ISCB:} past-present perspective for the International Society for
                  Computational Biology},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3243--3245},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt629},
  doi          = {10.1093/BIOINFORMATICS/BTT629},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Rost13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RostkowskiSR13,
  author       = {Michal Rostkowski and
                  Ola Spjuth and
                  Patrik Rydberg},
  title        = {WhichCyp: prediction of cytochromes {P450} inhibition},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {2051--2052},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt325},
  doi          = {10.1093/BIOINFORMATICS/BTT325},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RostkowskiSR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RottgerKSSAWB13,
  author       = {Richard R{\"{o}}ttger and
                  Prabhav Kalaghatgi and
                  Peng Sun and
                  Siomar de Castro Soares and
                  Vasco Ariston de Carvalho Azevedo and
                  Tobias Wittkop and
                  Jan Baumbach},
  title        = {Density parameter estimation for finding clusters of homologous proteins
                  - tracing actinobacterial pathogenicity lifestyles},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {215--222},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts653},
  doi          = {10.1093/BIOINFORMATICS/BTS653},
  timestamp    = {Wed, 24 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RottgerKSSAWB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Rubio-CamarilloGFVP13,
  author       = {Miriam Rubio{-}Camarillo and
                  Gonzalo G{\'{o}}mez{-}L{\'{o}}pez and
                  Jos{\'{e}} Mar{\'{\i}}a Fern{\'{a}}ndez and
                  Alfonso Valencia and
                  David G. Pisano},
  title        = {RUbioSeq: a suite of parallelized pipelines to automate exome variation
                  and bisulfite-seq analyses},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1687--1689},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt203},
  doi          = {10.1093/BIOINFORMATICS/BTT203},
  timestamp    = {Fri, 07 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Rubio-CamarilloGFVP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RuttenbergLLFS13,
  author       = {Brian E. Ruttenberg and
                  Gabriel Luna and
                  Geoffrey P. Lewis and
                  Steven K. Fisher and
                  Ambuj K. Singh},
  title        = {Quantifying spatial relationships from whole retinal images},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {7},
  pages        = {940--946},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt052},
  doi          = {10.1093/BIOINFORMATICS/BTT052},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RuttenbergLLFS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SakaiMRA13,
  author       = {Ryo Sakai and
                  Matthieu Moisse and
                  Joke Reumers and
                  Jan Aerts},
  title        = {Pipit: visualizing functional impacts of structural variations},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2206--2207},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt367},
  doi          = {10.1093/BIOINFORMATICS/BTT367},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SakaiMRA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SakaiSMA13,
  author       = {Ryo Sakai and
                  Alejandro Sifrim and
                  Andrew Vande Moere and
                  Jan Aerts},
  title        = {TrioVis: a visualization approach for filtering genomic variants of
                  parent-child trios},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1801--1802},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt267},
  doi          = {10.1093/BIOINFORMATICS/BTT267},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SakaiSMA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SakuraiAKNIEMASS13,
  author       = {Nozomu Sakurai and
                  Takeshi Ara and
                  Shigehiko Kanaya and
                  Yukiko Nakamura and
                  Yoko Iijima and
                  Mitsuo Enomoto and
                  Takeshi Motegi and
                  Koh Aoki and
                  Hideyuki Suzuki and
                  Daisuke Shibata},
  title        = {An application of a relational database system for high-throughput
                  prediction of elemental compositions from accurate mass values},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {290--291},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts660},
  doi          = {10.1093/BIOINFORMATICS/BTS660},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SakuraiAKNIEMASS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SalamaS13,
  author       = {Rafik Amir Salama and
                  Dov J. Stekel},
  title        = {A non-independent energy-based multiple sequence alignment improves
                  prediction of transcription factor binding sites},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2699--2704},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt463},
  doi          = {10.1093/BIOINFORMATICS/BTT463},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SalamaS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Sanchez-PulidoP13,
  author       = {Luis S{\'{a}}nchez{-}Pulido and
                  Chris P. Ponting},
  title        = {Tiki, at the head of a new superfamily of enzymes},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2371--2374},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt412},
  doi          = {10.1093/BIOINFORMATICS/BTT412},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Sanchez-PulidoP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SatoHO13,
  author       = {Keiko Sato and
                  Toshihide Hara and
                  Masanori Ohya},
  title        = {The code structure of the p53 DNA-binding domain and the prognosis
                  of breast cancer patients},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2822--2825},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt497},
  doi          = {10.1093/BIOINFORMATICS/BTT497},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SatoHO13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SauthoffMJG13,
  author       = {Georg Sauthoff and
                  Mathias M{\"{o}}hl and
                  Stefan Janssen and
                  Robert Giegerich},
  title        = {Bellman's {GAP} - a language and compiler for dynamic programming
                  in sequence analysis},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {551--560},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt022},
  doi          = {10.1093/BIOINFORMATICS/BTT022},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SauthoffMJG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SavojardoFC13,
  author       = {Castrense Savojardo and
                  Piero Fariselli and
                  Rita Casadio},
  title        = {{BETAWARE:} a machine-learning tool to detect and predict transmembrane
                  beta-barrel proteins in prokaryotes},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {504--505},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts728},
  doi          = {10.1093/BIOINFORMATICS/BTS728},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SavojardoFC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SavojardoFMC13,
  author       = {Castrense Savojardo and
                  Piero Fariselli and
                  Pier Luigi Martelli and
                  Rita Casadio},
  title        = {BCov: a method for predicting {\(\beta\)}-sheet topology using sparse
                  inverse covariance estimation and integer programming},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3151--3157},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt555},
  doi          = {10.1093/BIOINFORMATICS/BTT555},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SavojardoFMC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchaalHGS13,
  author       = {Wesley Schaal and
                  Ulf Hammerling and
                  Mats G. Gustafsson and
                  Ola Spjuth},
  title        = {Automated QuantMap for rapid quantitative molecular network topology
                  analysis},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2369--2370},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt390},
  doi          = {10.1093/BIOINFORMATICS/BTT390},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SchaalHGS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchmidtEMAPH13,
  author       = {Brian J. Schmidt and
                  Ali Ebrahim and
                  Thomas O. Metz and
                  Joshua N. Adkins and
                  Bernhard {\O}. Palsson and
                  Daniel R. Hyduke},
  title        = {GIM\({}^{\mbox{3}}\)E: condition-specific models of cellular metabolism
                  developed from metabolomics and expression data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2900--2908},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt493},
  doi          = {10.1093/BIOINFORMATICS/BTT493},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SchmidtEMAPH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchnattingerSK13,
  author       = {Thomas Schnattinger and
                  Uwe Sch{\"{o}}ning and
                  Hans A. Kestler},
  title        = {Structural {RNA} alignment by multi-objective optimization},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1607--1613},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt188},
  doi          = {10.1093/BIOINFORMATICS/BTT188},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SchnattingerSK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchnattingerSMK13,
  author       = {Thomas Schnattinger and
                  Uwe Sch{\"{o}}ning and
                  Anita Marchfelder and
                  Hans A. Kestler},
  title        = {RNA-Pareto: interactive analysis of Pareto-optimal {RNA} sequence-structure
                  alignments},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {3102--3104},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt536},
  doi          = {10.1093/BIOINFORMATICS/BTT536},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SchnattingerSMK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchneiderOHHK13,
  author       = {Robert Schneider and
                  Florian Odronitz and
                  Bj{\"{o}}rn Hammesfahr and
                  Marcel Hellkamp and
                  Martin Kollmar},
  title        = {Peakr: simulating solid-state {NMR} spectra of proteins},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1134--1140},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt125},
  doi          = {10.1093/BIOINFORMATICS/BTT125},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SchneiderOHHK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ScholtalbersRSGBCS13,
  author       = {Jelle Scholtalbers and
                  Jasmin R{\"{o}}{\ss}ler and
                  Patrick Sorn and
                  Jos de Graaf and
                  Valesca Boisgu{\'{e}}rin and
                  John C. Castle and
                  Ugur Sahin},
  title        = {Galaxy {LIMS} for next-generation sequencing},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1233--1234},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt115},
  doi          = {10.1093/BIOINFORMATICS/BTT115},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ScholtalbersRSGBCS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchopflinTMWRW13,
  author       = {Robert Sch{\"{o}}pflin and
                  Vladimir B. Teif and
                  Oliver M{\"{u}}ller and
                  Christin Weinberg and
                  Karsten Rippe and
                  Gero Wedemann},
  title        = {Modeling nucleosome position distributions from experimental nucleosome
                  positioning maps},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2380--2386},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt404},
  doi          = {10.1093/BIOINFORMATICS/BTT404},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SchopflinTMWRW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchroderGQCH13,
  author       = {Markus S. Schr{\"{o}}der and
                  Daniel Gusenleitner and
                  John Quackenbush and
                  Aed{\'{\i}}n C. Culhane and
                  Benjamin Haibe{-}Kains},
  title        = {RamiGO: an R/Bioconductor package providing an AmiGO Visualize interface},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {666--668},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts708},
  doi          = {10.1093/BIOINFORMATICS/BTS708},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SchroderGQCH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchroederSDMEPRB13,
  author       = {Christopher M. Schroeder and
                  Marc Sturm and
                  Andreas Dufke and
                  Ulrike Mau{-}Holzmann and
                  Thomas Eggermann and
                  Sven Poths and
                  Olaf Riess and
                  Michael Bonin},
  title        = {UPDtool: a tool for detection of iso- and heterodisomy in parent-child
                  trios using {SNP} microarrays},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {12},
  pages        = {1562--1564},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt174},
  doi          = {10.1093/BIOINFORMATICS/BTT174},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SchroederSDMEPRB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchupbachPBBXC13,
  author       = {Thierry Sch{\"{u}}pbach and
                  Marco Pagni and
                  Alan J. Bridge and
                  Lydie Bougueleret and
                  Ioannis Xenarios and
                  Lorenzo Cerutti},
  title        = {pfsearchV3: a code acceleration and heuristic to search {PROSITE}
                  profiles},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1215--1217},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt129},
  doi          = {10.1093/BIOINFORMATICS/BTT129},
  timestamp    = {Fri, 15 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SchupbachPBBXC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SedgewickBRSV13,
  author       = {Andrew J. Sedgewick and
                  Stephen C. Benz and
                  Shahrooz Rabizadeh and
                  Patrick Soon{-}Shiong and
                  Charles J. Vaske},
  title        = {Learning subgroup-specific regulatory interactions and regulator independence
                  with {PARADIGM}},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {62--70},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt229},
  doi          = {10.1093/BIOINFORMATICS/BTT229},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SedgewickBRSV13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SedlazeckRH13,
  author       = {Fritz J. Sedlazeck and
                  Philipp Rescheneder and
                  Arndt von Haeseler},
  title        = {NextGenMap: fast and accurate read mapping in highly polymorphic genomes},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2790--2791},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt468},
  doi          = {10.1093/BIOINFORMATICS/BTT468},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SedlazeckRH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Serang13,
  author       = {Oliver Serang},
  title        = {Concerning the accuracy of Fido and parameter choice},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {412},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts687},
  doi          = {10.1093/BIOINFORMATICS/BTS687},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Serang13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SfrisoHEO13,
  author       = {Pedro Sfriso and
                  Adam Hospital and
                  Agust{\'{\i}} Emperador and
                  Modesto Orozco},
  title        = {Exploration of conformational transition pathways from coarse-grained
                  simulations},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {1980--1986},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt324},
  doi          = {10.1093/BIOINFORMATICS/BTT324},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SfrisoHEO13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SharmanG13,
  author       = {Joanna L. Sharman and
                  Dietlind L. Gerloff},
  title        = {MaGnET: Malaria Genome Exploration Tool},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2350--2352},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt384},
  doi          = {10.1093/BIOINFORMATICS/BTT384},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SharmanG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShavitL13,
  author       = {Yoli Shavit and
                  Pietro Li{\`{o}}},
  title        = {CytoHiC: a cytoscape plugin for visual comparison of Hi-C networks},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1206--1207},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt120},
  doi          = {10.1093/BIOINFORMATICS/BTT120},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ShavitL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SheikhKRB13,
  author       = {Saad I. Sheikh and
                  Tamer Kahveci and
                  Sanjay Ranka and
                  J. Gordon Burleigh},
  title        = {Stability analysis of phylogenetic trees},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {166--174},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts657},
  doi          = {10.1093/BIOINFORMATICS/BTS657},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SheikhKRB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SheppardLZ13,
  author       = {Sarah Sheppard and
                  Nathan D. Lawson and
                  Lihua Julie Zhu},
  title        = {Accurate identification of polyadenylation sites from 3{\({'}\)}
                  end deep sequencing using a na{\"{\i}}ve Bayes classifier},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2564--2571},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt446},
  doi          = {10.1093/BIOINFORMATICS/BTT446},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SheppardLZ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SheppardRK13,
  author       = {Patrick W. Sheppard and
                  Muruhan Rathinam and
                  Mustafa Khammash},
  title        = {SPSens: a software package for stochastic parameter sensitivity analysis
                  of biochemical reaction networks},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {140--142},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts642},
  doi          = {10.1093/BIOINFORMATICS/BTS642},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SheppardRK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShiM13,
  author       = {Yuhao Shi and
                  Jacek Majewski},
  title        = {FishingCNV: a graphical software package for detecting rare copy number
                  variations in exome-sequencing data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1461--1462},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt151},
  doi          = {10.1093/BIOINFORMATICS/BTT151},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ShiM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShiMHWPT13,
  author       = {Yuan Shi and
                  Gregory Mellier and
                  Sinong Huang and
                  Jacob K. White and
                  Shazib Pervaiz and
                  Lisa Tucker{-}Kellogg},
  title        = {Computational modelling of {LY303511} and TRAIL-induced apoptosis
                  suggests dynamic regulation of cFLIP},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {347--354},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts702},
  doi          = {10.1093/BIOINFORMATICS/BTS702},
  timestamp    = {Mon, 08 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ShiMHWPT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShihabGCDG13,
  author       = {Hashem A. Shihab and
                  Julian Gough and
                  David N. Cooper and
                  Ian N. M. Day and
                  Tom R. Gaunt},
  title        = {Predicting the functional consequences of cancer-associated amino
                  acid substitutions},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {12},
  pages        = {1504--1510},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt182},
  doi          = {10.1093/BIOINFORMATICS/BTT182},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ShihabGCDG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShimoniPYGR13,
  author       = {Raz Shimoni and
                  Kim Pham and
                  Mohammed Yassin and
                  Min Gu and
                  Sarah M. Russell},
  title        = {TACTICS, an interactive platform for customized high-content bioimaging
                  analysis},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {817--818},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt035},
  doi          = {10.1093/BIOINFORMATICS/BTT035},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ShimoniPYGR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShresthaF13,
  author       = {Anish Man Singh Shrestha and
                  Martin C. Frith},
  title        = {An approximate Bayesian approach for mapping paired-end {DNA} reads
                  to a reference genome},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {965--972},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt073},
  doi          = {10.1093/BIOINFORMATICS/BTT073},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ShresthaF13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShugayMVN13,
  author       = {Mikhail Shugay and
                  I{\~{n}}igo Ortiz de Mend{\'{\i}}bil and
                  Jos{\'{e}} L. Vizmanos and
                  Francisco J. Novo},
  title        = {Oncofuse: a computational framework for the prediction of the oncogenic
                  potential of gene fusions},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2539--2546},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt445},
  doi          = {10.1093/BIOINFORMATICS/BTT445},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ShugayMVN13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SieversDWH13,
  author       = {Fabian Sievers and
                  David Dineen and
                  Andreas Wilm and
                  Desmond G. Higgins},
  title        = {Making automated multiple alignments of very large numbers of protein
                  sequences},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {989--995},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt093},
  doi          = {10.1093/BIOINFORMATICS/BTT093},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SieversDWH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SilbersteinWOTASTGGSBDTG13,
  author       = {Mark Silberstein and
                  Omer Weissbrod and
                  Lars Otten and
                  Anna Tzemach and
                  Andrei Anisenia and
                  Oren Shtark and
                  Dvir Tuberg and
                  Eddie Galfrin and
                  Irena Gannon and
                  Adel Shalata and
                  Zvi U. Borochowitz and
                  Rina Dechter and
                  Elizabeth Thompson and
                  Dan Geiger},
  title        = {A system for exact and approximate genetic linkage analysis of {SNP}
                  data in large pedigrees},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {197--205},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts658},
  doi          = {10.1093/BIOINFORMATICS/BTS658},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SilbersteinWOTASTGGSBDTG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SilbersteinWOTASTGGSBDTG13a,
  author       = {Mark Silberstein and
                  Omer Weissbrod and
                  Lars Otten and
                  Anna Tzemach and
                  Andrei Anisenia and
                  Oren Shtark and
                  Dvir Tuberg and
                  Eddie Galfrin and
                  Irena Gannon and
                  Adel Shalata and
                  Zvi U. Borochowitz and
                  Rina Dechter and
                  Elizabeth Thompson and
                  Dan Geiger},
  title        = {A system for exact and approximate genetic linkage analysis of {SNP}
                  data in large pedigrees},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {669},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt046},
  doi          = {10.1093/BIOINFORMATICS/BTT046},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SilbersteinWOTASTGGSBDTG13a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SilverBBY13,
  author       = {David H. Silver and
                  Shay Ben{-}Elazar and
                  Alexei Bogoslavsky and
                  Itai Yanai},
  title        = {{ELOPER:} elongation of paired-end reads as a pre-processing tool
                  for improved \emph{de novo} genome assembly},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1455--1457},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt169},
  doi          = {10.1093/BIOINFORMATICS/BTT169},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SilverBBY13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SkwarkAE13,
  author       = {Marcin J. Skwark and
                  Abbi Abdel{-}Rehim and
                  Arne Elofsson},
  title        = {PconsC: combination of direct information methods and alignments improves
                  contact prediction},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1815--1816},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt259},
  doi          = {10.1093/BIOINFORMATICS/BTT259},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SkwarkAE13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SkwarkE13,
  author       = {Marcin J. Skwark and
                  Arne Elofsson},
  title        = {PconsD: ultra rapid, accurate model quality assessment for protein
                  structure prediction},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1817--1818},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt272},
  doi          = {10.1093/BIOINFORMATICS/BTT272},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SkwarkE13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SlaterCSM13,
  author       = {Alex W. Slater and
                  Javier I. Castellanos and
                  Manfred J. Sippl and
                  Francisco Melo},
  title        = {Towards the development of standardized methods for comparison, ranking
                  and evaluation of structure alignments},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {47--53},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts600},
  doi          = {10.1093/BIOINFORMATICS/BTS600},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SlaterCSM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SloggettGA13,
  author       = {Clare Sloggett and
                  Nuwan Goonasekera and
                  Enis Afgan},
  title        = {BioBlend: automating pipeline analyses within Galaxy and CloudMan},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1685--1686},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt199},
  doi          = {10.1093/BIOINFORMATICS/BTT199},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SloggettGA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SluskyD13,
  author       = {Joanna S. G. Slusky and
                  Roland L. Dunbrack Jr.},
  title        = {Charge asymmetry in the proteins of the outer membrane},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2122--2128},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt355},
  doi          = {10.1093/BIOINFORMATICS/BTT355},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SluskyD13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmithAVP13,
  author       = {Robert Smith and
                  Tamil S. Anthonymuthu and
                  Dan Ventura and
                  John T. Prince},
  title        = {Statistical agglomeration: peak summarization for direct infusion
                  lipidomics},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2445--2451},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt376},
  doi          = {10.1093/BIOINFORMATICS/BTT376},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SmithAVP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmithVP13,
  author       = {Robert Smith and
                  Dan Ventura and
                  John T. Prince},
  title        = {Novel algorithms and the benefits of comparative validation},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {12},
  pages        = {1583--1585},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt176},
  doi          = {10.1093/BIOINFORMATICS/BTT176},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SmithVP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SnajderTH13,
  author       = {Ren{\'{e}} Snajder and
                  Zlatko Trajanoski and
                  Hubert Hackl},
  title        = {GPViz: dynamic visualization of genomic regions and variants affecting
                  protein domains},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2195--2196},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt354},
  doi          = {10.1093/BIOINFORMATICS/BTT354},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SnajderTH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SoferSHHB13,
  author       = {Tamar Sofer and
                  Elizabeth D. Schifano and
                  Jane A. Hoppin and
                  Lifang Hou and
                  Andrea A. Baccarelli},
  title        = {A-clustering: a novel method for the detection of co-regulated methylation
                  regions, and regions associated with exposure},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2884--2891},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt498},
  doi          = {10.1093/BIOINFORMATICS/BTT498},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SoferSHHB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SommerH0HG13,
  author       = {Christoph Sommer and
                  Michael Held and
                  Bernd Fischer and
                  Wolfgang Huber and
                  Daniel Gerlich},
  title        = {CellH5: a format for data exchange in high-content screening},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {12},
  pages        = {1580--1582},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt175},
  doi          = {10.1093/BIOINFORMATICS/BTT175},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SommerH0HG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SorokinaSAD13,
  author       = {Oksana Sorokina and
                  Anatoly A. Sorokin and
                  J. Douglas Armstrong and
                  Vincent Danos},
  title        = {A simulator for spatially extended kappa models},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {3105--3106},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt523},
  doi          = {10.1093/BIOINFORMATICS/BTT523},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SorokinaSAD13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SpitzZH13,
  author       = {Andreas Spitz and
                  Katharina Anna Zweig and
                  Emoke{-}{\'{A}}gnes Horv{\'{a}}t},
  title        = {\emph{SICOP}: identifying significant co-interaction patterns},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2503--2504},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt408},
  doi          = {10.1093/BIOINFORMATICS/BTT408},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SpitzZH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SpjuthGCABWWE13,
  author       = {Ola Spjuth and
                  Valentin Georgiev and
                  Lars Carlsson and
                  Jonathan Alvarsson and
                  Arvid Berg and
                  Egon L. Willighagen and
                  Jarl E. S. Wikberg and
                  Martin Eklund},
  title        = {Bioclipse-R: integrating management and visualization of life science
                  data with statistical analysis},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {286--289},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts681},
  doi          = {10.1093/BIOINFORMATICS/BTS681},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SpjuthGCABWWE13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SrihariR13,
  author       = {Sriganesh Srihari and
                  Mark A. Ragan},
  title        = {Systematic tracking of dysregulated modules identifies novel genes
                  in cancer},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {12},
  pages        = {1553--1561},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt191},
  doi          = {10.1093/BIOINFORMATICS/BTT191},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SrihariR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StockelMKGBRKKL13,
  author       = {Daniel St{\"{o}}ckel and
                  Oliver M{\"{u}}ller and
                  Tim Kehl and
                  Andreas Gerasch and
                  Christina Backes and
                  Alexander Rurainski and
                  Andreas Keller and
                  Michael Kaufmann and
                  Hans{-}Peter Lenhof},
  title        = {NetworkTrail - a web service for identifying and visualizing deregulated
                  subnetworks},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1702--1703},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt204},
  doi          = {10.1093/BIOINFORMATICS/BTT204},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/StockelMKGBRKKL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SugdenTSTL13,
  author       = {Lauren A. Sugden and
                  Michael R. Tackett and
                  Yiannis A. Savva and
                  William A. Thompson and
                  Charles E. Lawrence},
  title        = {Assessing the validity and reproducibility of genome-scale predictions},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2844--2851},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt508},
  doi          = {10.1093/BIOINFORMATICS/BTT508},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SugdenTSTL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunQLWLWLYTRBZLL13,
  author       = {Hanfei Sun and
                  Bo Qin and
                  Tao Liu and
                  Qixuan Wang and
                  Jing Liu and
                  Juan Wang and
                  Xueqiu Lin and
                  Yulin Yang and
                  Len Taing and
                  Prakash K. Rao and
                  Myles Brown and
                  Yong Zhang and
                  Henry Long and
                  Xiaole Shirley Liu},
  title        = {CistromeFinder for ChIP-seq and DNase-seq data reuse},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {10},
  pages        = {1352--1354},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt135},
  doi          = {10.1093/BIOINFORMATICS/BTT135},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SunQLWLWLYTRBZLL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SutterlinKDJG13,
  author       = {Thomas S{\"{u}}tterlin and
                  Christoph Kolb and
                  Hartmut Dickhaus and
                  Dirk J{\"{a}}ger and
                  Niels Grabe},
  title        = {Bridging the scales: semantic integration of quantitative {SBML} in
                  graphical multi-cellular models and simulations with {EPISIM} and
                  {COPASI}},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {223--229},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts659},
  doi          = {10.1093/BIOINFORMATICS/BTS659},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SutterlinKDJG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Suyama13,
  author       = {Mikita Suyama},
  title        = {Mechanistic insights into mutually exclusive splicing in \emph{dynamin
                  1}},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2084--2087},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt368},
  doi          = {10.1093/BIOINFORMATICS/BTT368},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Suyama13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TaboureauJKERGA13,
  author       = {Olivier Taboureau and
                  Ulrik Plesner Jacobsen and
                  Christian Kalhauge and
                  Daniel Edsg{\"{a}}rd and
                  Olga Rigina and
                  Ramneek Gupta and
                  Karine Audouze},
  title        = {HExpoChem: a systems biology resource to explore human exposure to
                  chemicals},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1231--1232},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt112},
  doi          = {10.1093/BIOINFORMATICS/BTT112},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TaboureauJKERGA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TaeMSBG13,
  author       = {Hongseok Tae and
                  Kevin W. McMahon and
                  Robert E. Settlage and
                  Jasmin H. Bavarva and
                  Harold R. Garner},
  title        = {ReviSTER: an automated pipeline to revise misaligned reads to simple
                  tandem repeats},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1734--1741},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt277},
  doi          = {10.1093/BIOINFORMATICS/BTT277},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TaeMSBG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TaghaviMDC13,
  author       = {Zeinab Taghavi and
                  Narjes S. Movahedi and
                  Sorin Draghici and
                  Hamidreza Chitsaz},
  title        = {Distilled single-cell genome sequencing and \emph{de novo} assembly
                  for sparse microbial communities},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2395--2401},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt420},
  doi          = {10.1093/BIOINFORMATICS/BTT420},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TaghaviMDC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TakedaCG13,
  author       = {Takako Takeda and
                  Rosario I. Corona and
                  Jun{-}tao Guo},
  title        = {A knowledge-based orientation potential for transcription factor-DNA
                  docking},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {322--330},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts699},
  doi          = {10.1093/BIOINFORMATICS/BTS699},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TakedaCG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TakizawaNTCMHF13,
  author       = {Hiromu Takizawa and
                  Kazushige Nakamura and
                  Akito Tabira and
                  Yoichi Chikahara and
                  Tatsuhiro Matsui and
                  Noriko Hiroi and
                  Akira Funahashi},
  title        = {LibSBMLSim: a reference implementation of fully functional {SBML}
                  simulator},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1474--1476},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt157},
  doi          = {10.1093/BIOINFORMATICS/BTT157},
  timestamp    = {Sun, 06 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TakizawaNTCMHF13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TamboreroGL13,
  author       = {David Tamborero and
                  Abel Gonzalez{-}Perez and
                  N{\'{u}}ria L{\'{o}}pez{-}Bigas},
  title        = {OncodriveCLUST: exploiting the positional clustering of somatic mutations
                  to identify cancer genes},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2238--2244},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt395},
  doi          = {10.1093/BIOINFORMATICS/BTT395},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TamboreroGL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TanCDCM13,
  author       = {Christopher M. Tan and
                  Edward Y. Chen and
                  Ruth Dannenfelser and
                  Neil R. Clark and
                  Avi Ma'ayan},
  title        = {Network2Canvas: network visualization on a canvas with enrichment
                  analysis},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {15},
  pages        = {1872--1878},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt319},
  doi          = {10.1093/BIOINFORMATICS/BTT319},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TanCDCM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TangAB13,
  author       = {Shiyuyun Tang and
                  Ivan Antonov and
                  Mark Borodovsky},
  title        = {MetaGeneTack: ab initio detection of frameshifts in metagenomic sequences},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {114--116},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts636},
  doi          = {10.1093/BIOINFORMATICS/BTS636},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TangAB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TangL13,
  author       = {Zheng{-}Zheng Tang and
                  Dan{-}Yu Lin},
  title        = {{MASS:} meta-analysis of score statistics for sequencing studies},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1803--1805},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt280},
  doi          = {10.1093/BIOINFORMATICS/BTT280},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TangL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TarcaLUBBDHKMMNNPRRSTXZC13,
  author       = {Adi L. Tarca and
                  Mario Lauria and
                  Michael Unger and
                  Erhan Bilal and
                  St{\'{e}}phanie Bou{\'{e}} and
                  Kushal Kumar Dey and
                  Julia Hoeng and
                  Heinz Koeppl and
                  Florian Martin and
                  Pablo Meyer and
                  Preetam Nandy and
                  Raquel Norel and
                  Manuel C. Peitsch and
                  John Jeremy Rice and
                  Roberto Romero and
                  Gustavo Stolovitzky and
                  Marja Talikka and
                  Yang Xiang and
                  Christoph Zechner and
                  Improver Dsc Collaborators},
  title        = {Strengths and limitations of microarray-based phenotype prediction:
                  lessons learned from the {IMPROVER} Diagnostic Signature Challenge},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2892--2899},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt492},
  doi          = {10.1093/BIOINFORMATICS/BTT492},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TarcaLUBBDHKMMNNPRRSTXZC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TaylorDTP13,
  author       = {Ryan M. Taylor and
                  Jamison Dance and
                  Russ J. Taylor and
                  John T. Prince},
  title        = {Metriculator: quality assessment for mass spectrometry-based proteomics},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2948--2949},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt510},
  doi          = {10.1093/BIOINFORMATICS/BTT510},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TaylorDTP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TekirCASKKSUKOSU13,
  author       = {Saliha Durmus Tekir and
                  Tunahan {\c{C}}akir and
                  Emre Ardi{\c{c}} and
                  Ali Semih Sayilirbas and
                  G{\"{o}}khan Konuk and
                  Mithat Konuk and
                  Hasret Sariyer and
                  Azat Ugurlu and
                  Ilknur Karadeniz and
                  Arzucan {\"{O}}zg{\"{u}}r and
                  Fatih Erdogan Sevilgen and
                  Kutlu {\"{O}}. {\"{U}}lgen},
  title        = {{PHISTO:} pathogen-host interaction search tool},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {10},
  pages        = {1357--1358},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt137},
  doi          = {10.1093/BIOINFORMATICS/BTT137},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TekirCASKKSUKOSU13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TengGLDWX13,
  author       = {Zhixia Teng and
                  Maozu Guo and
                  Xiaoyan Liu and
                  Qiguo Dai and
                  Chun{-}yu Wang and
                  Ping Xuan},
  title        = {Measuring gene functional similarity based on group-wise comparison
                  of {GO} terms},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1424--1432},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt160},
  doi          = {10.1093/BIOINFORMATICS/BTT160},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TengGLDWX13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TepperS13,
  author       = {Naama Tepper and
                  Tomer Shlomi},
  title        = {An integrated computational approach for metabolic flux analysis coupled
                  with inference of tandem-MS collisional fragments},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {3045--3052},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt516},
  doi          = {10.1093/BIOINFORMATICS/BTT516},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TepperS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TeschendorffMLBTGB13,
  author       = {Andrew E. Teschendorff and
                  Francesco Marabita and
                  Matthias Lechner and
                  Thomas E. Bartlett and
                  Jesper Tegn{\'{e}}r and
                  David Gomez{-}Cabrero and
                  Stephan Beck},
  title        = {A beta-mixture quantile normalization method for correcting probe
                  design bias in Illumina Infinium 450 k {DNA} methylation data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {189--196},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts680},
  doi          = {10.1093/BIOINFORMATICS/BTS680},
  timestamp    = {Thu, 10 Jun 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TeschendorffMLBTGB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ThiemeG13,
  author       = {Sebastian Thieme and
                  Philip Groth},
  title        = {Genome Fusion Detection: a novel method to detect fusion genes from
                  SNP-array data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {671--677},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt028},
  doi          = {10.1093/BIOINFORMATICS/BTT028},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ThiemeG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ThomasHNSC13,
  author       = {Niclas Thomas and
                  James M. Heather and
                  Wilfred Ndifon and
                  John Shawe{-}Taylor and
                  Benjamin Chain},
  title        = {Decombinator: a tool for fast, efficient gene assignment in T-cell
                  receptor sequences using a finite state machine},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {542--550},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt004},
  doi          = {10.1093/BIOINFORMATICS/BTT004},
  timestamp    = {Wed, 19 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ThomasHNSC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TolosiTHHBL13,
  author       = {Laura Tolosi and
                  Jessica Thei{\ss}en and
                  Konstantin Halachev and
                  Barbara Hero and
                  Frank Berthold and
                  Thomas Lengauer},
  title        = {A method for finding consensus breakpoints in the cancer genome from
                  copy number data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1793--1800},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt300},
  doi          = {10.1093/BIOINFORMATICS/BTT300},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TolosiTHHBL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TongCSC13,
  author       = {Pan Tong and
                  Yong Chen and
                  Xiao Su and
                  Kevin R. Coombes},
  title        = {{SIBER:} systematic identification of bimodally expressed genes using
                  RNAseq data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {605--613},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts713},
  doi          = {10.1093/BIOINFORMATICS/BTS713},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TongCSC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TorchalaMCFB13,
  author       = {Mieczyslaw Torchala and
                  Iain H. Moal and
                  Raphael A. G. Chaleil and
                  Juan Fern{\'{a}}ndez{-}Recio and
                  Paul A. Bates},
  title        = {SwarmDock: a server for flexible protein-protein docking},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {807--809},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt038},
  doi          = {10.1093/BIOINFORMATICS/BTT038},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TorchalaMCFB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TraoreAAGKSB13,
  author       = {Seydou Traor{\'{e}} and
                  David Allouche and
                  Isabelle Andr{\'{e}} and
                  Simon de Givry and
                  George Katsirelos and
                  Thomas Schiex and
                  Sophie Barbe},
  title        = {A new framework for computational protein design through cost function
                  network optimization},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2129--2136},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt374},
  doi          = {10.1093/BIOINFORMATICS/BTT374},
  timestamp    = {Thu, 23 Sep 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TraoreAAGKSB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TrevisanASCM13,
  author       = {J{\'{u}}lio Trevisan and
                  Plamen P. Angelov and
                  Andrew D. Scott and
                  Paul L. Carmichael and
                  Francis L. Martin},
  title        = {IRootLab: a free and open-source {MATLAB} toolbox for vibrational
                  biospectroscopy data analysis},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {1095--1097},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt084},
  doi          = {10.1093/BIOINFORMATICS/BTT084},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TrevisanASCM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TriskaGSMT13,
  author       = {Martin Triska and
                  David Grocutt and
                  James Southern and
                  Denis J. Murphy and
                  Tatiana V. Tatarinova},
  title        = {\emph{cisExpress}: motif detection in {DNA} sequences},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2203--2205},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt366},
  doi          = {10.1093/BIOINFORMATICS/BTT366},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TriskaGSMT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TrostAGNK13,
  author       = {Brett Trost and
                  Ryan Arsenault and
                  Philip J. Griebel and
                  Scott Napper and
                  Anthony J. Kusalik},
  title        = {{DAPPLE:} a pipeline for the homology-based prediction of phosphorylation
                  sites},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1693--1695},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt265},
  doi          = {10.1093/BIOINFORMATICS/BTT265},
  timestamp    = {Wed, 23 Feb 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TrostAGNK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TrostK13,
  author       = {Brett Trost and
                  Anthony J. Kusalik},
  title        = {Computational phosphorylation site prediction in plants using random
                  forests and organism-specific instance weights},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {686--694},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt031},
  doi          = {10.1093/BIOINFORMATICS/BTT031},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TrostK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TsaiTPPMWR13,
  author       = {Tsung{-}Heng Tsai and
                  Mahlet G. Tadesse and
                  Cristina Di Poto and
                  Lewis K. Pannell and
                  Yehia Mechref and
                  Yue Joseph Wang and
                  Habtom W. Ressom},
  title        = {Multi-profile Bayesian alignment model for {LC-MS} data analysis with
                  integration of internal standards},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2774--2780},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt461},
  doi          = {10.1093/BIOINFORMATICS/BTT461},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TsaiTPPMWR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TudoseHMOTDKES13,
  author       = {Ilinca Tudose and
                  Janna Hastings and
                  Venkatesh Muthukrishnan and
                  Gareth I. Owen and
                  Steve Turner and
                  Adriano Dekker and
                  Namrata Kale and
                  Marcus Ennis and
                  Christoph Steinbeck},
  title        = {OntoQuery: easy-to-use web-based {OWL} querying},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2955--2957},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt514},
  doi          = {10.1093/BIOINFORMATICS/BTT514},
  timestamp    = {Mon, 28 Mar 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TudoseHMOTDKES13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VaasSHFBKG13,
  author       = {Lea A. I. Vaas and
                  Johannes Sikorski and
                  Benjamin Hofner and
                  Anne Fiebig and
                  Nora Buddruhs and
                  Hans{-}Peter Klenk and
                  Markus G{\"{o}}ker},
  title        = {opm: an {R} package for analysing OmniLog\({}^{\mbox{{\textregistered}}}\)
                  phenotype microarray data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1823--1824},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt291},
  doi          = {10.1093/BIOINFORMATICS/BTT291},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/VaasSHFBKG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VealXRFHMBHT13,
  author       = {Colin D. Veal and
                  Hang Xu and
                  Katherine Reekie and
                  Robert C. Free and
                  Robert J. Hardwick and
                  David McVey and
                  Anthony J. Brookes and
                  Edward J. Hollox and
                  Christopher J. Talbot},
  title        = {Automated design of paralogue ratio test assays for the accurate and
                  rapid typing of copy number variation},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {1997--2003},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt330},
  doi          = {10.1093/BIOINFORMATICS/BTT330},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/VealXRFHMBHT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Vera-LiconaBBZ13,
  author       = {Paola Vera{-}Licona and
                  Eric Bonnet and
                  Emmanuel Barillot and
                  Andrei Yu. Zinovyev},
  title        = {{OCSANA:} optimal combinations of interventions from network analysis},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {12},
  pages        = {1571--1573},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt195},
  doi          = {10.1093/BIOINFORMATICS/BTT195},
  timestamp    = {Tue, 10 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Vera-LiconaBBZ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VerbekeCDFM13,
  author       = {Lieven P. C. Verbeke and
                  Lore Cloots and
                  Piet Demeester and
                  Jan Fostier and
                  Kathleen Marchal},
  title        = {{EPSILON:} an eQTL prioritization framework using similarity measures
                  derived from local networks},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {10},
  pages        = {1308--1316},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt142},
  doi          = {10.1093/BIOINFORMATICS/BTT142},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/VerbekeCDFM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VincentGW13,
  author       = {Thomas L. Vincent and
                  Peter J. Green and
                  Derek N. Woolfson},
  title        = {{LOGICOIL} - multi-state prediction of coiled-coil oligomeric state},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {69--76},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts648},
  doi          = {10.1093/BIOINFORMATICS/BTS648},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/VincentGW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VlachakisTMK13,
  author       = {Dimitrios Vlachakis and
                  Dimosthenis Tsagkrasoulis and
                  Vasileios Megalooikonomou and
                  Sophia Kossida},
  title        = {Introducing Drugster: a comprehensive and fully integrated drug design,
                  lead and structure optimization toolkit},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {126--128},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts637},
  doi          = {10.1093/BIOINFORMATICS/BTS637},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/VlachakisTMK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VlaicHKWD13,
  author       = {Sebastian Vlaic and
                  Bianca Hoffmann and
                  Peter Kupfer and
                  Michael Weber and
                  Andreas Dr{\"{a}}ger},
  title        = {{GRN2SBML:} automated encoding and annotation of inferred gene regulatory
                  networks complying with {SBML}},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2216--2217},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt370},
  doi          = {10.1093/BIOINFORMATICS/BTT370},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/VlaicHKWD13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VoegeleBRMDA13,
  author       = {Catherine Voegele and
                  Baptiste Bouchereau and
                  Nivonirina Robinot and
                  James McKay and
                  Philippe Damiecki and
                  Lucile Alteyrac},
  title        = {A universal open-source Electronic Laboratory Notebook},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1710--1712},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt253},
  doi          = {10.1093/BIOINFORMATICS/BTT253},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/VoegeleBRMDA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VotapkaA13,
  author       = {Lane Votapka and
                  Rommie E. Amaro},
  title        = {Multistructural hot spot characterization with FTProd},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {393--394},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts689},
  doi          = {10.1093/BIOINFORMATICS/BTS689},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/VotapkaA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VyvermanBFD13,
  author       = {Micha{\"{e}}l Vyverman and
                  Bernard De Baets and
                  Veerle Fack and
                  Peter Dawyndt},
  title        = {essaMEM: finding maximal exact matches using enhanced sparse suffix
                  arrays},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {802--804},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt042},
  doi          = {10.1093/BIOINFORMATICS/BTT042},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/VyvermanBFD13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WaltemathHHSW13,
  author       = {Dagmar Waltemath and
                  Ron Henkel and
                  Robert H{\"{a}}lke and
                  Martin Scharm and
                  Olaf Wolkenhauer},
  title        = {Improving the reuse of computational models through version control},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {742--748},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt018},
  doi          = {10.1093/BIOINFORMATICS/BTT018},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WaltemathHHSW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangALP13,
  author       = {Yingfeng Wang and
                  Tae{-}Hyuk Ahn and
                  Zhou Li and
                  Chongle Pan},
  title        = {Sipros/ProRata: a versatile informatics system for quantitative community
                  proteomics},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {2064--2065},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt329},
  doi          = {10.1093/BIOINFORMATICS/BTT329},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangALP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangBHG13,
  author       = {Yan Wang and
                  Tyler W. H. Backman and
                  Kevin Horan and
                  Thomas Girke},
  title        = {fmcsR: mismatch tolerant maximum common substructure searching in
                  {R}},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2792--2794},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt475},
  doi          = {10.1093/BIOINFORMATICS/BTT475},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangBHG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangBMBMD13,
  author       = {Wenting Wang and
                  Veerabhadran Baladandayuthapani and
                  Jeffrey S. Morris and
                  Bradley M. Broom and
                  Ganiraju Manyam and
                  Kim{-}Anh Do},
  title        = {iBAG: integrative Bayesian analysis of high-dimensional multiplatform
                  genomics data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {149--159},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts655},
  doi          = {10.1093/BIOINFORMATICS/BTS655},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangBMBMD13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangC13,
  author       = {Ching{-}Wei Wang and
                  Hsiang{-}Chou Chen},
  title        = {Improved image alignment method in application to X-ray images and
                  biological images},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {15},
  pages        = {1879--1887},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt309},
  doi          = {10.1093/BIOINFORMATICS/BTT309},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangCDW13,
  author       = {Yong{-}Cui Wang and
                  Shi{-}Long Chen and
                  Nai{-}Yang Deng and
                  Yong Wang},
  title        = {Network predicting drug's anatomical therapeutic chemical code},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {10},
  pages        = {1317--1324},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt158},
  doi          = {10.1093/BIOINFORMATICS/BTT158},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangCDW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangGLLWXC13,
  author       = {Juan Wang and
                  Maozu Guo and
                  Xiaoyan Liu and
                  Yang Liu and
                  Chun{-}yu Wang and
                  Linlin Xing and
                  Kai Che},
  title        = {Lnetwork: an efficient and effective method for constructing phylogenetic
                  networks},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2269--2276},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt378},
  doi          = {10.1093/BIOINFORMATICS/BTT378},
  timestamp    = {Thu, 28 Jan 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangGLLWXC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangL13,
  author       = {Jijie Wang and
                  Henry Lam},
  title        = {Graph-based peak alignment algorithms for multiple liquid chromatography-mass
                  spectrometry datasets},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2469--2476},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt435},
  doi          = {10.1093/BIOINFORMATICS/BTT435},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangLJ13,
  author       = {Jianrong Wang and
                  Victoria V. Lunyak and
                  I King Jordan},
  title        = {BroadPeak: a novel algorithm for identifying broad peaks in diffuse
                  ChIP-seq datasets},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {492--493},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts722},
  doi          = {10.1093/BIOINFORMATICS/BTS722},
  timestamp    = {Sun, 14 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangLJ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangLP13,
  author       = {Yupeng Wang and
                  Jingping Li and
                  Andrew H. Paterson},
  title        = {\emph{MCScanX-transposed}: detecting transposed gene duplications
                  based on multiple colinearity scans},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1458--1460},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt150},
  doi          = {10.1093/BIOINFORMATICS/BTT150},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangLP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangLSTZJLWEMRW13,
  author       = {Tao Wang and
                  Jie Liu and
                  Li Shen and
                  Julian Tonti{-}Filippini and
                  Yun Zhu and
                  Haiyang Jia and
                  Ryan Lister and
                  John W. Whitaker and
                  Joseph R. Ecker and
                  A. Harvey Millar and
                  Bing Ren and
                  Wei Wang},
  title        = {{STAR:} an integrated solution to management and visualization of
                  sequencing data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3204--3210},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt558},
  doi          = {10.1093/BIOINFORMATICS/BTT558},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangLSTZJLWEMRW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangWAS13,
  author       = {Liming Wang and
                  Xiaodong Wang and
                  Adam P. Arkin and
                  Michael S. Samoilov},
  title        = {Inference of gene regulatory networks from genome-wide knockout fitness
                  data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {338--346},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts634},
  doi          = {10.1093/BIOINFORMATICS/BTS634},
  timestamp    = {Fri, 24 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangWAS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangX13,
  author       = {Zhiyong Wang and
                  Jinbo Xu},
  title        = {Predicting protein contact map using evolutionary and physical constraints
                  by integer programming},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {266--273},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt211},
  doi          = {10.1093/BIOINFORMATICS/BTT211},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangX13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangXLL13,
  author       = {Zixing Wang and
                  Wenlong Xu and
                  F. Anthony San Lucas and
                  Yin Liu},
  title        = {Incorporating prior knowledge into Gene Network Study},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2633--2640},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt443},
  doi          = {10.1093/BIOINFORMATICS/BTT443},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangXLL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangYPHL13,
  author       = {Wenhui Wang and
                  Xiaolin Yin and
                  Yoon Soo Pyon and
                  Matthew Hayes and
                  Jing Li},
  title        = {Rare variant discovery and calling by sequencing pooled samples with
                  overlaps},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {29--38},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts645},
  doi          = {10.1093/BIOINFORMATICS/BTS645},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangYPHL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangZ13,
  author       = {Yuhao Wang and
                  Jianyang Zeng},
  title        = {Predicting drug-target interactions using restricted Boltzmann machines},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {126--134},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt234},
  doi          = {10.1093/BIOINFORMATICS/BTT234},
  timestamp    = {Wed, 02 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangZ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangZ13a,
  author       = {Xiaojing Wang and
                  Bing Zhang},
  title        = {\emph{customProDB}: an {R} package to generate customized protein
                  databases from RNA-Seq data for proteomics search},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3235--3237},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt543},
  doi          = {10.1093/BIOINFORMATICS/BTT543},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WangZ13a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WatsonSK13,
  author       = {Mick Watson and
                  Esther Schnettler and
                  Alain Kohl},
  title        = {viRome: an {R} package for the visualization and analysis of viral
                  small {RNA} sequence datasets},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {15},
  pages        = {1902--1903},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt297},
  doi          = {10.1093/BIOINFORMATICS/BTT297},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WatsonSK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Weber13,
  author       = {Gerald Weber},
  title        = {TfReg: calculating {DNA} and {RNA} melting temperatures and opening
                  profiles with mesoscopic models},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {10},
  pages        = {1345--1347},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt133},
  doi          = {10.1093/BIOINFORMATICS/BTT133},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Weber13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeiHKL13,
  author       = {Chih{-}Hsuan Wei and
                  Bethany R. Harris and
                  Hung{-}Yu Kao and
                  Zhiyong Lu},
  title        = {tmVar: a text mining approach for extracting sequence variants in
                  biomedical literature},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1433--1439},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt156},
  doi          = {10.1093/BIOINFORMATICS/BTT156},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WeiHKL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeiSKKSAWMZ13,
  author       = {Xiaoli Wei and
                  Xue Shi and
                  Imhoi Koo and
                  Seongho Kim and
                  Robin H. Schmidt and
                  Gavin E. Arteel and
                  Walter H. Watson and
                  Craig McClain and
                  Xiang Zhang},
  title        = {MetPP: a computational platform for comprehensive two-dimensional
                  gas chromatography time-of-flight mass spectrometry-based metabolomics},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1786--1792},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt275},
  doi          = {10.1093/BIOINFORMATICS/BTT275},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WeiSKKSAWMZ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeinbrandAB13,
  author       = {Lina Weinbrand and
                  Assaf Avihoo and
                  Danny Barash},
  title        = {RNAfbinv: an interactive Java application for fragment-based design
                  of {RNA} sequences},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2938--2940},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt494},
  doi          = {10.1093/BIOINFORMATICS/BTT494},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WeinbrandAB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeismanYB13,
  author       = {David Weisman and
                  Michie Yasuda and
                  Jennifer L. Bowen},
  title        = {FunFrame: functional gene ecological analysis pipeline},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1212--1214},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt123},
  doi          = {10.1093/BIOINFORMATICS/BTT123},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WeismanYB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeitzelNDNSW13,
  author       = {Michael Weitzel and
                  Katharina N{\"{o}}h and
                  Tolga Dalman and
                  Sebastian Niedenf{\"{u}}hr and
                  Birgit Stute and
                  Wolfgang Wiechert},
  title        = {13CFLUX2 - high-performance software suite for \({}^{\mbox{13}}\)C-metabolic
                  flux analysis},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {143--145},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts646},
  doi          = {10.1093/BIOINFORMATICS/BTS646},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WeitzelNDNSW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WheelerE13,
  author       = {Travis J. Wheeler and
                  Sean R. Eddy},
  title        = {nhmmer: {DNA} homology search with profile HMMs},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2487--2489},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt403},
  doi          = {10.1093/BIOINFORMATICS/BTT403},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WheelerE13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WiedemannBG13,
  author       = {Christoph Wiedemann and
                  Peter Bellstedt and
                  Matthias G{\"{o}}rlach},
  title        = {{CAPITO} - a web server-based analysis and plotting tool for circular
                  dichroism data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1750--1757},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt278},
  doi          = {10.1093/BIOINFORMATICS/BTT278},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WiedemannBG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WiegelsBT13,
  author       = {Tim Wiegels and
                  Stefan Bienert and
                  Andrew E. Torda},
  title        = {Fast alignment and comparison of {RNA} structures},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {588--596},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt006},
  doi          = {10.1093/BIOINFORMATICS/BTT006},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WiegelsBT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WilkinsVMEALL13,
  author       = {Angela D. Wilkins and
                  Eric Venner and
                  David C. Marciano and
                  Serkan Erdin and
                  Benu Atri and
                  Rhonald C. Lua and
                  Olivier Lichtarge},
  title        = {Accounting for epistatic interactions improves the functional analysis
                  of protein structures},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2714--2721},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt489},
  doi          = {10.1093/BIOINFORMATICS/BTT489},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WilkinsVMEALL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WooZSRG13,
  author       = {Sangsoon Woo and
                  Xuekui Zhang and
                  Renan Sauteraud and
                  Fran{\c{c}}ois Robert and
                  Raphael Gottardo},
  title        = {{PING} 2.0: an R/Bioconductor package for nucleosome positioning using
                  next-generation sequencing data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {2049--2050},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt348},
  doi          = {10.1093/BIOINFORMATICS/BTT348},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WooZSRG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WoodbridgeTB13,
  author       = {Mark Woodbridge and
                  Christopher D. Tomlinson and
                  Sarah A. Butcher},
  title        = {{ADAM:} automated data management for research datasets},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {146--147},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts644},
  doi          = {10.1093/BIOINFORMATICS/BTS644},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WoodbridgeTB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WoodcockVKKFR13,
  author       = {Dan J. Woodcock and
                  Keith W. Vance and
                  Michal Komorowski and
                  Georgy Koentges and
                  B{\"{a}}rbel Finkenst{\"{a}}dt and
                  David A. Rand},
  title        = {A hierarchical model of transcriptional dynamics allows robust estimation
                  of transcription rates in populations of single cells with variable
                  gene copy number},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {12},
  pages        = {1519--1525},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt201},
  doi          = {10.1093/BIOINFORMATICS/BTT201},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WoodcockVKKFR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WrzodekEBZ13,
  author       = {Clemens Wrzodek and
                  Johannes Eichner and
                  Finja B{\"{u}}chel and
                  Andreas Zell},
  title        = {InCroMAP: integrated analysis of cross-platform microarray and pathway
                  data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {506--508},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts709},
  doi          = {10.1093/BIOINFORMATICS/BTS709},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WrzodekEBZ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuKLYM13,
  author       = {Chia{-}Chin Wu and
                  Kalpana Kannan and
                  Steven Lin and
                  Laising Yen and
                  Aleksandar Milosavljevic},
  title        = {Identification of cancer fusion drivers using network fusion centrality},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1174--1181},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt131},
  doi          = {10.1093/BIOINFORMATICS/BTT131},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WuKLYM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuLHC13,
  author       = {Ming Wu and
                  Li Liu and
                  Hussein Hijazi and
                  Christina Chan},
  title        = {A multi-layer inference approach to reconstruct condition-specific
                  genes and their regulation},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {12},
  pages        = {1541--1552},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt186},
  doi          = {10.1093/BIOINFORMATICS/BTT186},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WuLHC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuYMZIZDJ13,
  author       = {George Wu and
                  Jason T. Yustein and
                  Matthew N. McCall and
                  Michael J. Zilliox and
                  Rafael A. Irizarry and
                  Karen Zeller and
                  Chi V. Dang and
                  Hongkai Ji},
  title        = {ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1182--1189},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt108},
  doi          = {10.1093/BIOINFORMATICS/BTT108},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WuYMZIZDJ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuZHHCWLPY13,
  author       = {Jikun Wu and
                  Wenqian Zhang and
                  Songbo Huang and
                  Zengquan He and
                  Yanbing Cheng and
                  Jun Wang and
                  Tak Wah Lam and
                  Zhiyu Peng and
                  Siu{-}Ming Yiu},
  title        = {SOAPfusion: a robust and effective computational fusion discovery
                  tool for RNA-seq reads},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {2971--2978},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt522},
  doi          = {10.1093/BIOINFORMATICS/BTT522},
  timestamp    = {Tue, 20 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WuZHHCWLPY13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/X13,
  title        = {{ISCB/SPRINGER} series in computational biology},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3246--3247},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt630},
  doi          = {10.1093/BIOINFORMATICS/BTT630},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/X13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiaACFS13,
  author       = {Li C. Xia and
                  Dongmei Ai and
                  Jacob A. Cram and
                  Jed A. Fuhrman and
                  Fengzhu Sun},
  title        = {Efficient statistical significance approximation for local similarity
                  analysis of high-throughput time series data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {230--237},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts668},
  doi          = {10.1093/BIOINFORMATICS/BTS668},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/XiaACFS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiaLMPH13,
  author       = {Jianguo Xia and
                  Ngan H. Lyle and
                  Matthew L. Mayer and
                  Olga M. Pena and
                  Robert E. W. Hancock},
  title        = {{INVEX} - a web-based tool for integrative visualization of expression
                  data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3232--3234},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt562},
  doi          = {10.1093/BIOINFORMATICS/BTT562},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/XiaLMPH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiaoP13,
  author       = {Hang Xiao and
                  Hanchuan Peng},
  title        = {{APP2:} automatic tracing of 3D neuron morphology based on hierarchical
                  pruning of a gray-weighted image distance-tree},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1448--1454},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt170},
  doi          = {10.1093/BIOINFORMATICS/BTT170},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/XiaoP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XieDHW13,
  author       = {Boya Xie and
                  Qin Ding and
                  Hongjin Han and
                  Di Wu},
  title        = {miRCancer: a microRNA-cancer association database constructed by text
                  mining on literature},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {638--644},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt014},
  doi          = {10.1093/BIOINFORMATICS/BTT014},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/XieDHW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XieJBSG13,
  author       = {Bo Xie and
                  Boris R. Jankovic and
                  Vladimir B. Bajic and
                  Le Song and
                  Xin Gao},
  title        = {Poly(A) motif prediction using spectral latent features from human
                  {DNA} sequences},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {316--325},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt218},
  doi          = {10.1093/BIOINFORMATICS/BTT218},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/XieJBSG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuA13,
  author       = {Min Xu and
                  Frank Alber},
  title        = {Automated target segmentation and real space fast alignment methods
                  for high-throughput classification and averaging of crowded cryo-electron
                  subtomograms},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {274--282},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt225},
  doi          = {10.1093/BIOINFORMATICS/BTT225},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/XuA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuLW13,
  author       = {Rong Xu and
                  Li Li and
                  QuanQiu Wang},
  title        = {Towards building a disease-phenotype knowledge base: extracting disease-manifestation
                  relationship from literature},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2186--2194},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt359},
  doi          = {10.1093/BIOINFORMATICS/BTT359},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/XuLW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuSL13,
  author       = {Songhua Xu and
                  Jianqiang Sheng and
                  Xiaonan Luo},
  title        = {A new algorithm for context-based biomedical diagram similarity estimation},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {780--789},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt030},
  doi          = {10.1093/BIOINFORMATICS/BTT030},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/XuSL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuYZS13,
  author       = {Ying{-}Ying Xu and
                  Fan Yang and
                  Yang Zhang and
                  Hong{-}Bin Shen},
  title        = {An image-based multi-label human protein subcellular localization
                  predictor (\emph{i}Locator) reveals protein mislocalizations in cancer
                  tissues},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {2032--2040},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt320},
  doi          = {10.1093/BIOINFORMATICS/BTT320},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/XuYZS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XueXWZ13,
  author       = {Zhidong Xue and
                  Dong Xu and
                  Yan Wang and
                  Yang Zhang},
  title        = {ThreaDom: extracting protein domain boundary information from multiple
                  threading alignments},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {247--256},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt209},
  doi          = {10.1093/BIOINFORMATICS/BTT209},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/XueXWZ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YadavKKD13,
  author       = {Amit Kumar Yadav and
                  Puneet Kumar Kadimi and
                  Dhirendra Kumar and
                  Debasis Dash},
  title        = {ProteoStats - a library for estimating false discovery rates in proteomics
                  pipelines},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2799--2800},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt490},
  doi          = {10.1093/BIOINFORMATICS/BTT490},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YadavKKD13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YanGHW13,
  author       = {Zhiqiang Yan and
                  Liyong Guo and
                  Liang Hu and
                  Jin Wang},
  title        = {Specificity and affinity quantification of protein-protein interactions},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1127--1133},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt121},
  doi          = {10.1093/BIOINFORMATICS/BTT121},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YanGHW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangCCC13,
  author       = {Cheng{-}Hong Yang and
                  Yu{-}Huei Cheng and
                  Li{-}Yeh Chuang and
                  Hsueh{-}Wei Chang},
  title        = {Drug-SNPing: an integrated drug-based, protein interaction-based tagSNP-based
                  pharmacogenomics platform for {SNP} genotyping},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {758--764},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt037},
  doi          = {10.1093/BIOINFORMATICS/BTT037},
  timestamp    = {Sun, 25 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YangCCC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangDRDRSL13,
  author       = {Kun Yang and
                  Ashok Reddy Dinasarapu and
                  Edimara S. Reis and
                  Robert A. DeAngelis and
                  Daniel Ricklin and
                  Shankar Subramaniam and
                  John D. Lambris},
  title        = {{CMAP:} Complement Map Database},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1832--1833},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt269},
  doi          = {10.1093/BIOINFORMATICS/BTT269},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YangDRDRSL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangGJ13,
  author       = {Ei{-}Wen Yang and
                  Thomas Girke and
                  Tao Jiang},
  title        = {Differential gene expression analysis using coexpression and RNA-Seq
                  data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2153--2161},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt363},
  doi          = {10.1093/BIOINFORMATICS/BTT363},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YangGJ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangHWHPE13,
  author       = {Wen{-}Yun Yang and
                  Farhad Hormozdiari and
                  Zhanyong Wang and
                  Dan He and
                  Bogdan Pasaniuc and
                  Eleazar Eskin},
  title        = {Leveraging reads that span multiple single nucleotide polymorphisms
                  for haplotype inference from sequencing data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2245--2252},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt386},
  doi          = {10.1093/BIOINFORMATICS/BTT386},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YangHWHPE13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangJZS13,
  author       = {Jing Yang and
                  Richard Jang and
                  Yang Zhang and
                  Hong{-}Bin Shen},
  title        = {High-accuracy prediction of transmembrane inter-helix contacts and
                  application to {GPCR} 3D structure modeling},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2579--2587},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt440},
  doi          = {10.1093/BIOINFORMATICS/BTT440},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YangJZS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangLBW13,
  author       = {James J. Yang and
                  Jia Li and
                  Anne Buu and
                  L. Keoki Williams},
  title        = {Efficient inference of local ancestry},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2750--2756},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt488},
  doi          = {10.1093/BIOINFORMATICS/BTT488},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YangLBW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangPZF13,
  author       = {Shengping Yang and
                  Stanley Pounds and
                  Kun Zhang and
                  Zhide Fang},
  title        = {{PAIR:} paired allelic log-intensity-ratio-based normalization method
                  for {SNP-CGH} arrays},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {3},
  pages        = {299--307},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts683},
  doi          = {10.1093/BIOINFORMATICS/BTS683},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YangPZF13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangRZ13,
  author       = {Jianyi Yang and
                  Ambrish Roy and
                  Yang Zhang},
  title        = {Protein-ligand binding site recognition using complementary binding-specific
                  substructure comparison and sequence profile alignment},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {20},
  pages        = {2588--2595},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt447},
  doi          = {10.1093/BIOINFORMATICS/BTT447},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YangRZ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangWZZ13,
  author       = {Can Yang and
                  Lin Wang and
                  Shuqin Zhang and
                  Hongyu Zhao},
  title        = {Accounting for non-genetic factors by low-rank representation and
                  sparse regression for eQTL mapping},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {8},
  pages        = {1026--1034},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt075},
  doi          = {10.1093/BIOINFORMATICS/BTT075},
  timestamp    = {Thu, 28 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YangWZZ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Yau13,
  author       = {Christopher Yau},
  title        = {OncoSNP-SEQ: a statistical approach for the identification of somatic
                  copy number alterations from next-generation sequencing of cancer
                  genomes},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2482--2484},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt416},
  doi          = {10.1093/BIOINFORMATICS/BTT416},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Yau13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YeWWR13,
  author       = {Yanbo Ye and
                  Bo Wei and
                  Lei Wen and
                  Simon Rayner},
  title        = {BlastGraph: a comparative genomics tool based on {BLAST} and graph
                  algorithms},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3222--3224},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt553},
  doi          = {10.1093/BIOINFORMATICS/BTT553},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YeWWR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YostAMSJFH13,
  author       = {Shawn E. Yost and
                  Hakan Alakus and
                  Hiroko Matsui and
                  Richard B. Schwab and
                  Kristen Jepsen and
                  Kelly A. Frazer and
                  Olivier Harismendy},
  title        = {Mutascope: sensitive detection of somatic mutations from deep amplicon
                  sequencing},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {15},
  pages        = {1908--1909},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt305},
  doi          = {10.1093/BIOINFORMATICS/BTT305},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YostAMSJFH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YoungsPDSB13,
  author       = {Noah Youngs and
                  Duncan Penfold{-}Brown and
                  Kevin Drew and
                  Dennis E. Shasha and
                  Richard Bonneau},
  title        = {Parametric Bayesian priors and better choice of negative examples
                  improve protein function prediction},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1190--1198},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt110},
  doi          = {10.1093/BIOINFORMATICS/BTT110},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YoungsPDSB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YousefiD13,
  author       = {Mohammadmahdi R. Yousefi and
                  Edward R. Dougherty},
  title        = {Intervention in gene regulatory networks with maximal phenotype alteration},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1758--1767},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt242},
  doi          = {10.1093/BIOINFORMATICS/BTT242},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YousefiD13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuHV13,
  author       = {Danni Yu and
                  Wolfgang Huber and
                  Olga Vitek},
  title        = {Shrinkage estimation of dispersion in Negative Binomial models for
                  RNA-seq experiments with small sample size},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {10},
  pages        = {1275--1282},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt143},
  doi          = {10.1093/BIOINFORMATICS/BTT143},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YuHV13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuMHZMT13,
  author       = {Chuan{-}Yih Yu and
                  Anoop M. Mayampurath and
                  Yunli Hu and
                  Shiyue Zhou and
                  Yehia Mechref and
                  Haixu Tang},
  title        = {Automated annotation and quantification of glycans using liquid chromatography-mass
                  spectrometry},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {1706--1707},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt190},
  doi          = {10.1093/BIOINFORMATICS/BTT190},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YuMHZMT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZaretzkiBHRSB13,
  author       = {Jed Zaretzki and
                  Charles Bergeron and
                  Tao{-}wei Huang and
                  Patrik Rydberg and
                  S. Joshua Swamidass and
                  Curt M. Breneman},
  title        = {RS-WebPredictor: a server for predicting CYP-mediated sites of metabolism
                  on drug-like molecules},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {4},
  pages        = {497--498},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts705},
  doi          = {10.1093/BIOINFORMATICS/BTS705},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZaretzkiBHRSB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZarringhalamEGSZ13,
  author       = {Kourosh Zarringhalam and
                  Ahmed Enayetallah and
                  Alex Gutteridge and
                  Ben Sidders and
                  Daniel Ziemek},
  title        = {Molecular causes of transcriptional response: a Bayesian prior knowledge
                  approach},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3167--3173},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt557},
  doi          = {10.1093/BIOINFORMATICS/BTT557},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZarringhalamEGSZ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZeiselYBD13,
  author       = {Amit Zeisel and
                  Assif Yitzhaky and
                  Noa Bossel Ben{-}Moshe and
                  Eytan Domany},
  title        = {An accessible database for mouse and human whole transcriptome qPCR
                  primers},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {10},
  pages        = {1355--1356},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt145},
  doi          = {10.1093/BIOINFORMATICS/BTT145},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZeiselYBD13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZengJC13,
  author       = {Feng Zeng and
                  Rui Jiang and
                  Ting Chen},
  title        = {PyroHMMvar: a sensitive and accurate method to call short indels and
                  SNPs for Ion Torrent and 454 data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2859--2868},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt512},
  doi          = {10.1093/BIOINFORMATICS/BTT512},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZengJC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Zhang13,
  author       = {Yu Zhang},
  title        = {A dynamic Bayesian Markov model for phasing and characterizing haplotypes
                  in next-generation sequencing},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {7},
  pages        = {878--885},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt065},
  doi          = {10.1093/BIOINFORMATICS/BTT065},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Zhang13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangAM13,
  author       = {Fengkai Zhang and
                  Bastian Robert Angermann and
                  Martin Meier{-}Schellersheim},
  title        = {The Simmune Modeler visual interface for creating signaling networks
                  based on bi-molecular interactions},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {9},
  pages        = {1229--1230},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt134},
  doi          = {10.1093/BIOINFORMATICS/BTT134},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZhangAM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangHWZVM013,
  author       = {Zhaojun Zhang and
                  Shunping Huang and
                  Jack Wang and
                  Xiang Zhang and
                  Fernando Pardo{-}Manuel de Villena and
                  Leonard McMillan and
                  Wei Wang},
  title        = {GeneScissors: a comprehensive approach to detecting and correcting
                  spurious transcriptome inference owing to RNA-seq reads misalignment},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {291--299},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt216},
  doi          = {10.1093/BIOINFORMATICS/BTT216},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZhangHWZVM013.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangKPS13,
  author       = {Jiajie Zhang and
                  Paschalia Kapli and
                  Pavlos Pavlidis and
                  Alexandros Stamatakis},
  title        = {A general species delimitation method with applications to phylogenetic
                  placements},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2869--2876},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt499},
  doi          = {10.1093/BIOINFORMATICS/BTT499},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZhangKPS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangLLDRZHC13,
  author       = {Xiujun Zhang and
                  Keqin Liu and
                  Zhi{-}Ping Liu and
                  B{\'{e}}atrice Duval and
                  Jean{-}Michel Richer and
                  Xing{-}Ming Zhao and
                  Jin{-}Kao Hao and
                  Luonan Chen},
  title        = {{NARROMI:} a noise and redundancy reduction technique improves accuracy
                  of gene regulatory network inference},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {106--113},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts619},
  doi          = {10.1093/BIOINFORMATICS/BTS619},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZhangLLDRZHC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangSC13,
  author       = {Yuan Zhang and
                  Yanni Sun and
                  James R. Cole},
  title        = {A Sensitive and Accurate protein domain cLassification Tool {(SALT)}
                  for short reads},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2103--2111},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt357},
  doi          = {10.1093/BIOINFORMATICS/BTT357},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZhangSC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangWHXCP13,
  author       = {Chao Zhang and
                  Jiguang Wang and
                  Kristina Hanspers and
                  Dong Xu and
                  Luonan Chen and
                  Alexander R. Pico},
  title        = {{NOA:} a cytoscape plugin for network ontology analysis},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {2066--2067},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt334},
  doi          = {10.1093/BIOINFORMATICS/BTT334},
  timestamp    = {Tue, 23 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZhangWHXCP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangWLF13,
  author       = {Chengjun Zhang and
                  Jun Wang and
                  Manyuan Long and
                  Chuanzhu Fan},
  title        = {gKaKs: the pipeline for genome-level Ka/Ks calculation},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {5},
  pages        = {645--646},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt009},
  doi          = {10.1093/BIOINFORMATICS/BTT009},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZhangWLF13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangZ13,
  author       = {Xiaohua Douglas Zhang and
                  Zhaozhi Zhang},
  title        = {displayHTS: a {R} package for displaying data and results from high-throughput
                  screening experiments},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {6},
  pages        = {794--796},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt060},
  doi          = {10.1093/BIOINFORMATICS/BTT060},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZhangZ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangZ13a,
  author       = {Kui Zhang and
                  Degui Zhi},
  title        = {Joint haplotype phasing and genotype calling of multiple individuals
                  using haplotype informative reads},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2427--2434},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt418},
  doi          = {10.1093/BIOINFORMATICS/BTT418},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZhangZ13a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangZ13b,
  author       = {Quanwei Zhang and
                  Zhengdong D. Zhang},
  title        = {SubNet: a Java application for subnetwork extraction},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2509--2511},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt430},
  doi          = {10.1093/BIOINFORMATICS/BTT430},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZhangZ13b.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangZ13c,
  author       = {Liangcai Zhang and
                  Li Zhang},
  title        = {Use of autocorrelation scanning in {DNA} copy number analysis},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2678--2682},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt479},
  doi          = {10.1093/BIOINFORMATICS/BTT479},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZhangZ13c.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangZYYLY13,
  author       = {Lu Zhang and
                  Jing Zhang and
                  Jing Yang and
                  Dingge Ying and
                  Yu{-}Lung Lau and
                  Wanling Yang},
  title        = {PriVar: a toolkit for prioritizing SNVs and indels from next-generation
                  sequencing data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {124--125},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts627},
  doi          = {10.1093/BIOINFORMATICS/BTS627},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZhangZYYLY13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhaoTAV13,
  author       = {Yang Zhao and
                  Takeyuki Tamura and
                  Tatsuya Akutsu and
                  Jean{-}Philippe Vert},
  title        = {Flux balance impact degree: a new definition of impact degree to properly
                  treat reversible reactions in metabolic networks},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2178--2185},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt364},
  doi          = {10.1093/BIOINFORMATICS/BTT364},
  timestamp    = {Wed, 06 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZhaoTAV13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZheNYQ13,
  author       = {Shandian Zhe and
                  Syed A. Z. Naqvi and
                  Yifan Yang and
                  Yuan Qi},
  title        = {Joint network and node selection for pathway-based genomic data analysis},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {1987--1996},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt335},
  doi          = {10.1093/BIOINFORMATICS/BTT335},
  timestamp    = {Thu, 03 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZheNYQ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhengMLHRMWWC13,
  author       = {Caihong Zheng and
                  Xuexia Miao and
                  Yanen Li and
                  Ying Huang and
                  Jue Ruan and
                  Xi Ma and
                  Li Wang and
                  Chung{-}I Wu and
                  Jun Cai},
  title        = {Determination of genomic copy number alteration emphasizing a restriction
                  site-based strategy of genome re-sequencing},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {22},
  pages        = {2813--2821},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt481},
  doi          = {10.1093/BIOINFORMATICS/BTT481},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZhengMLHRMWWC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhongKWXX13,
  author       = {Rui Zhong and
                  Min Soo Kim and
                  Michael A. White and
                  Yang Xie and
                  Guanghua Xiao},
  title        = {SbacHTS: Spatial background noise correction for High-Throughput RNAi
                  Screening},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {17},
  pages        = {2218--2220},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt358},
  doi          = {10.1093/BIOINFORMATICS/BTT358},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZhongKWXX13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhouCWSC13,
  author       = {Xi Zhou and
                  Pengcheng Chen and
                  Qiang Wei and
                  Xueling Shen and
                  Xin Chen},
  title        = {Human interactome resource and gene set linkage analysis for the functional
                  interpretation of biologically meaningful gene sets},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {16},
  pages        = {2024--2031},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt353},
  doi          = {10.1093/BIOINFORMATICS/BTT353},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZhouCWSC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhouRR13,
  author       = {Jindan Zhou and
                  Andrew J. Richardson and
                  Kenneth E. Rudd},
  title        = {EcoGene-RefSeq: EcoGene tools applied to the RefSeq prokaryotic genomes},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {15},
  pages        = {1917--1918},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt302},
  doi          = {10.1093/BIOINFORMATICS/BTT302},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZhouRR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhuNCWSL13,
  author       = {Zhengwei Zhu and
                  Beifang Niu and
                  Jing Chen and
                  Sitao Wu and
                  Shulei Sun and
                  Weizhong Li},
  title        = {MGAviewer: a desktop visualization tool for analysis of metagenomics
                  alignment data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {1},
  pages        = {122--123},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts567},
  doi          = {10.1093/BIOINFORMATICS/BTS567},
  timestamp    = {Fri, 10 Feb 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZhuNCWSL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZiebarthBC13,
  author       = {Jesse D. Ziebarth and
                  Anindya Bhattacharya and
                  Yan Cui},
  title        = {Bayesian Network Webserver: a comprehensive tool for biological network
                  modeling},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2801--2803},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt472},
  doi          = {10.1093/BIOINFORMATICS/BTT472},
  timestamp    = {Mon, 25 Jan 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZiebarthBC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZiminMPRSY13,
  author       = {Aleksey V. Zimin and
                  Guillaume Mar{\c{c}}ais and
                  Daniela Puiu and
                  Michael Roberts and
                  Steven L. Salzberg and
                  James A. Yorke},
  title        = {The MaSuRCA genome assembler},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {21},
  pages        = {2669--2677},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt476},
  doi          = {10.1093/BIOINFORMATICS/BTT476},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZiminMPRSY13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZorzanLEPLB13,
  author       = {Simone Zorzan and
                  Erika Lorenzetto and
                  Michele Ettorre and
                  Valeria Pontelli and
                  Carlo Laudanna and
                  Mario Buffelli},
  title        = {{HOMECAT:} consensus homologs mapping for interspecific knowledge
                  transfer and functional genomic data integration},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {12},
  pages        = {1574--1576},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt189},
  doi          = {10.1093/BIOINFORMATICS/BTT189},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZorzanLEPLB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZouNH13,
  author       = {Lingyun Zou and
                  Chonghan Nan and
                  Fuquan Hu},
  title        = {Accurate prediction of bacterial type {IV} secreted effectors using
                  amino acid composition and {PSSM} profiles},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {24},
  pages        = {3135--3142},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt554},
  doi          = {10.1093/BIOINFORMATICS/BTT554},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZouNH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZschalerG13,
  author       = {Gerd Zschaler and
                  Thilo Gross},
  title        = {Largenet2: an object-oriented programming library for simulating large
                  adaptive networks},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {2},
  pages        = {277--278},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/bts663},
  doi          = {10.1093/BIOINFORMATICS/BTS663},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZschalerG13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZytnickiLQ13,
  author       = {Matthias Zytnicki and
                  YuFei Luo and
                  Hadi Quesneville},
  title        = {Efficient comparison of sets of intervals with NC-lists},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {7},
  pages        = {933--939},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt070},
  doi          = {10.1093/BIOINFORMATICS/BTT070},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZytnickiLQ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/duVerleTMKT13,
  author       = {David duVerle and
                  Ichiro Takeuchi and
                  Yuko Murakami{-}Tonami and
                  Kenji Kadomatsu and
                  Koji Tsuda},
  title        = {Discovering combinatorial interactions in survival data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {3053--3059},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt532},
  doi          = {10.1093/BIOINFORMATICS/BTT532},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/duVerleTMKT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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