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@article{DBLP:journals/bioinformatics/AbakaBE13, author = {Gamze Abaka and T{\"{u}}rker B{\'{\i}}y{\'{\i}}koglu and Cesim Erten}, title = {CAMPways: constrained alignment framework for the comparative analysis of a pair of metabolic pathways}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {145--153}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt235}, doi = {10.1093/BIOINFORMATICS/BTT235}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AbakaBE13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AbbasiPLPM13, author = {Maryam Abbasi and Lu{\'{\i}}s Paquete and Arnaud Liefooghe and Miguel Pinheiro and Pedro Matias}, title = {Improvements on bicriteria pairwise sequence alignment: algorithms and applications}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {996--1003}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt098}, doi = {10.1093/BIOINFORMATICS/BTT098}, timestamp = {Sat, 18 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AbbasiPLPM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AbrishamiZRVOMSCS13, author = {Vahid Abrishami and Airen Zald{\'{\i}}var{-}Peraza and Jos{\'{e}} Miguel de la Rosa{-}Trev{\'{\i}}n and Javier Vargas and Joaqu{\'{\i}}n Ot{\'{o}}n and Roberto Marabini and Yoel Shkolnisky and Jos{\'{e}} Mar{\'{\i}}a Carazo and Carlos Oscar S{\'{a}}nchez Sorzano}, title = {A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2460--2468}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt429}, doi = {10.1093/BIOINFORMATICS/BTT429}, timestamp = {Tue, 22 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/AbrishamiZRVOMSCS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AdamsCYHTALGSATMGG13, author = {Richard R. Adams and Allan Clark and Azusa Yamaguchi and Neil Hanlon and Nikos Tsorman and Shakir Ali and Galina Lebedeva and Alexey N. Goltsov and Anatoly A. Sorokin and Ozgur E. Akman and Carl Troein and Andrew J. Millar and Igor Goryanin and Stephen Gilmore}, title = {{SBSI:} an extensible distributed software infrastructure for parameter estimation in systems biology}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {664--665}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt023}, doi = {10.1093/BIOINFORMATICS/BTT023}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/AdamsCYHTALGSATMGG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AerniLDGNGLPKB13, author = {Sarah J. Aerni and Xiao Liu and Chuong B. Do and Samuel S. Gross and Andy Nguyen and Stephen D. Guo and Fuhui Long and Hanchuan Peng and Stuart S. Kim and Serafim Batzoglou}, title = {Automated cellular annotation for high-resolution images of adult \emph{Caenorhabditis elegans}}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {18--26}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt223}, doi = {10.1093/BIOINFORMATICS/BTT223}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AerniLDGNGLPKB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AgostiniZKMCT13, author = {Federico Agostini and Andreas Zanzoni and Petr Klus and Domenica Marchese and Davide Cirillo and Gian Gaetano Tartaglia}, title = {\emph{cat}RAPID \emph{omics}: a web server for large-scale prediction of protein-RNA interactions}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2928--2930}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt495}, doi = {10.1093/BIOINFORMATICS/BTT495}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AgostiniZKMCT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AguiarI13, author = {Derek Aguiar and Sorin Istrail}, title = {Haplotype assembly in polyploid genomes and identical by descent shared tracts}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {352--360}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt213}, doi = {10.1093/BIOINFORMATICS/BTT213}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AguiarI13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AhnYPSDWW13, author = {Jaeil Ahn and Ying Yuan and Giovanni Parmigiani and Milind B. Suraokar and Lixia Diao and Ignacio I. Wistuba and Wenyi Wang}, title = {DeMix: deconvolution for mixed cancer transcriptomes using raw measured data}, journal = {Bioinform.}, volume = {29}, number = {15}, pages = {1865--1871}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt301}, doi = {10.1093/BIOINFORMATICS/BTT301}, timestamp = {Fri, 26 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AhnYPSDWW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AijoGL13, author = {Tarmo {\"{A}}ij{\"{o}} and Kirsi Granberg and Harri L{\"{a}}hdesm{\"{a}}ki}, title = {Sorad: a systems biology approach to predict and modulate dynamic signaling pathway response from phosphoproteome time-course measurements}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1283--1291}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt130}, doi = {10.1093/BIOINFORMATICS/BTT130}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/AijoGL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AksoyGDWRJCS13, author = {B{\"{u}}lent Arman Aksoy and Jianjiong Gao and Gideon Dresdner and Weiqing Wang and Alex Root and Xiaohong Jing and Ethan G. Cerami and Chris Sander}, title = {PiHelper: an open source framework for drug-target and antibody-target data}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {2071--2072}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt345}, doi = {10.1093/BIOINFORMATICS/BTT345}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AksoyGDWRJCS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AladagE13, author = {Ahmet Emre Aladag and Cesim Erten}, title = {{SPINAL:} scalable protein interaction network alignment}, journal = {Bioinform.}, volume = {29}, number = {7}, pages = {917--924}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt071}, doi = {10.1093/BIOINFORMATICS/BTT071}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AladagE13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AlaimoPGF13, author = {Salvatore Alaimo and Alfredo Pulvirenti and Rosalba Giugno and Alfredo Ferro}, title = {Drug-target interaction prediction through domain-tuned network-based inference}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {2004--2008}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt307}, doi = {10.1093/BIOINFORMATICS/BTT307}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AlaimoPGF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AlbaneseFVRJF13, author = {Davide Albanese and Michele Filosi and Roberto Visintainer and Samantha Riccadonna and Giuseppe Jurman and Cesare Furlanello}, title = {minerva and minepy: a {C} engine for the {MINE} suite and its R, Python and {MATLAB} wrappers}, journal = {Bioinform.}, volume = {29}, number = {3}, pages = {407--408}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts707}, doi = {10.1093/BIOINFORMATICS/BTS707}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AlbaneseFVRJF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AlexandrovB13, author = {Theodore Alexandrov and Andreas M. Bartels}, title = {Testing for presence of known and unknown molecules in imaging mass spectrometry}, journal = {Bioinform.}, volume = {29}, number = {18}, pages = {2335--2342}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt388}, doi = {10.1093/BIOINFORMATICS/BTT388}, timestamp = {Tue, 19 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AlexandrovB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AlicPMA13, author = {Andrei Alic and Jos{\'{e}} E. P{\'{e}}rez{-}Ort{\'{\i}}n and Joaqu{\'{\i}}n Moreno and Vicente Arnau}, title = {mRNAStab - a web application for mRNA stability analysis}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {813--814}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt040}, doi = {10.1093/BIOINFORMATICS/BTT040}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/AlicPMA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AllotAPRPL13, author = {Alexis Allot and Yannick{-}No{\"{e}}l Anno and Laetitia Poidevin and Raymond Ripp and Olivier Poch and Odile Lecompte}, title = {{PARSEC:} PAtteRn SEarch and Contextualization}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2643--2644}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt455}, doi = {10.1093/BIOINFORMATICS/BTT455}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/AllotAPRPL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AmatMK13, author = {Fernando Amat and Eugene W. Myers and Philipp J. Keller}, title = {Fast and robust optical flow for time-lapse microscopy using super-voxels}, journal = {Bioinform.}, volume = {29}, number = {3}, pages = {373--380}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts706}, doi = {10.1093/BIOINFORMATICS/BTS706}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AmatMK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AmbroisePDRJIRG13, author = {J{\'{e}}r{\^{o}}me Ambroise and Anne{-}Sophie Piette and Cathy Delcorps and Leen Rigouts and Bouke C. de Jong and Leonid Irenge and Annie Robert and Jean{-}Luc Gala}, title = {AdvISER-PYRO: Amplicon Identification using SparsE Representation of PYROsequencing signal}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {1963--1969}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt339}, doi = {10.1093/BIOINFORMATICS/BTT339}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/AmbroisePDRJIRG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AmesHGLGA13, author = {Sasha Ames and David A. Hysom and Shea N. Gardner and G. Scott Lloyd and Maya B. Gokhale and Jonathan E. Allen}, title = {Scalable metagenomic taxonomy classification using a reference genome database}, journal = {Bioinform.}, volume = {29}, number = {18}, pages = {2253--2260}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt389}, doi = {10.1093/BIOINFORMATICS/BTT389}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AmesHGLGA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AndersonHMVLTH13, author = {James W. J. Anderson and Pierre A. Haas and Leigh{-}Anne Mathieson and Vladimir Volynkin and Rune B. Lyngs{\o} and Paula Tataru and Jotun Hein}, title = {Oxfold: kinetic folding of {RNA} using stochastic context-free grammars and evolutionary information}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {704--710}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt050}, doi = {10.1093/BIOINFORMATICS/BTT050}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AndersonHMVLTH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AndreaniFG13, author = {Jessica Andreani and Guilhem Faure and Rapha{\"{e}}l Gu{\'{e}}rois}, title = {InterEvScore: a novel coarse-grained interface scoring function using a multi-body statistical potential coupled to evolution}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1742--1749}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt260}, doi = {10.1093/BIOINFORMATICS/BTT260}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AndreaniFG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AndreattaLN13, author = {Massimo Andreatta and Ole Lund and Morten Nielsen}, title = {Simultaneous alignment and clustering of peptide data using a Gibbs sampling approach}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {8--14}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts621}, doi = {10.1093/BIOINFORMATICS/BTS621}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AndreattaLN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AntoniottiBCCGM13, author = {Marco Antoniotti and Gary D. Bader and Giulio Caravagna and Silvia Crippa and Alex Graudenzi and Giancarlo Mauri}, title = {GeStoDifferent: a Cytoscape plugin for the generation and the identification of gene regulatory networks describing a stochastic cell differentiation process}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {513--514}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts726}, doi = {10.1093/BIOINFORMATICS/BTS726}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AntoniottiBCCGM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ArakelyanN13, author = {Arsen Arakelyan and Lilit Nersisyan}, title = {KEGGParser: parsing and editing {KEGG} pathway maps in Matlab}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {518--519}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts730}, doi = {10.1093/BIOINFORMATICS/BTS730}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ArakelyanN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ArenasSPB13, author = {Miguel Arenas and Helena G. Dos Santos and David Posada and Ugo Bastolla}, title = {Protein evolution along phylogenetic histories under structurally constrained substitution models}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {3020--3028}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt530}, doi = {10.1093/BIOINFORMATICS/BTT530}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ArenasSPB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ArtigaudGP13, author = {S{\'{e}}bastien Artigaud and Olivier Gauthier and Vianney Pichereau}, title = {Identifying differentially expressed proteins in two-dimensional electrophoresis experiments: inputs from transcriptomics statistical tools}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2729--2734}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt464}, doi = {10.1093/BIOINFORMATICS/BTT464}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ArtigaudGP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ArunapuramEGANSH13, author = {Preeti Arunapuram and Ingolfur Edvardsson and Michael Golden and James W. J. Anderson and {\'{A}}d{\'{a}}m Nov{\'{a}}k and Zsuzsanna S{\"{u}}k{\"{o}}sd and Jotun Hein}, title = {StatAlign 2.0: combining statistical alignment with {RNA} secondary structure prediction}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {654--655}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt025}, doi = {10.1093/BIOINFORMATICS/BTT025}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ArunapuramEGANSH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AschoffHGFEK13, author = {Moritz Aschoff and Agnes Hotz{-}Wagenblatt and Karl{-}Heinz Glatting and Matthias Fischer and Roland Eils and Rainer K{\"{o}}nig}, title = {SplicingCompass: differential splicing detection using RNA-Seq data}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1141--1148}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt101}, doi = {10.1093/BIOINFORMATICS/BTT101}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AschoffHGFEK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AshoorHKRBBB13, author = {Haitham Ashoor and Aur{\'{e}}lie H{\'{e}}rault and Aur{\'{e}}lie Kamoun and Fran{\c{c}}ois Radvanyi and Vladimir B. Bajic and Emmanuel Barillot and Valentina Boeva}, title = {HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {2979--2986}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt524}, doi = {10.1093/BIOINFORMATICS/BTT524}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AshoorHKRBBB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AuerbachCB13, author = {Raymond K. Auerbach and Bin Chen and Atul J. Butte}, title = {Relating genes to function: identifying enriched transcription factors using the {ENCODE} ChIP-Seq significance tool}, journal = {Bioinform.}, volume = {29}, number = {15}, pages = {1922--1924}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt316}, doi = {10.1093/BIOINFORMATICS/BTT316}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AuerbachCB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AzencottGSKB13, author = {Chlo{\'{e}}{-}Agathe Azencott and Dominik G. Grimm and Mahito Sugiyama and Yoshinobu Kawahara and Karsten M. Borgwardt}, title = {Efficient network-guided multi-locus association mapping with graph cuts}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {171--179}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt238}, doi = {10.1093/BIOINFORMATICS/BTT238}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AzencottGSKB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BaeleL13, author = {Guy Baele and Philippe Lemey}, title = {Bayesian evolutionary model testing in the phylogenomics era: matching model complexity with computational efficiency}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {1970--1979}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt340}, doi = {10.1093/BIOINFORMATICS/BTT340}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BaeleL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BakerPSJ13, author = {Syed Murtuza Baker and C. Hart Poskar and Falk Schreiber and Bj{\"{o}}rn H. Junker}, title = {An improved constraint filtering technique for inferring hidden states and parameters of a biological model}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {1052--1059}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt097}, doi = {10.1093/BIOINFORMATICS/BTT097}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/BakerPSJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BalzerMGJ13, author = {Susanne Balzer and Ketil Malde and Markus A. Grohme and Inge Jonassen}, title = {Filtering duplicate reads from 454 pyrosequencing data}, journal = {Bioinform.}, volume = {29}, number = {7}, pages = {830--836}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt047}, doi = {10.1093/BIOINFORMATICS/BTT047}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BalzerMGJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BansalBHGS13, author = {Mukul S. Bansal and Guy Banay and Timothy J. Harlow and J. Peter Gogarten and Ron Shamir}, title = {Systematic inference of highways of horizontal gene transfer in prokaryotes}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {571--579}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt021}, doi = {10.1093/BIOINFORMATICS/BTT021}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BansalBHGS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BaoJG13, author = {Ergude Bao and Tao Jiang and Thomas Girke}, title = {{BRANCH:} boosting RNA-Seq assemblies with partial or related genomic sequences}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1250--1259}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt127}, doi = {10.1093/BIOINFORMATICS/BTT127}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/BaoJG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BarannEKLLKAVSASLSR13, author = {Matthias Barann and Daniela Esser and Ulrich C. Klostermeier and Tuuli Lappalainen and Anne Luzius and Jan W. P. Kuiper and Ole Ammerpohl and Inga Vater and Reiner Siebert and Vyacheslav Amstislavskiy and Ralf Sudbrak and Hans Lehrach and Stefan Schreiber and Philip Rosenstiel}, title = {Janus - a comprehensive tool investigating the two faces of transcription}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1600--1606}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt185}, doi = {10.1093/BIOINFORMATICS/BTT185}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/BarannEKLLKAVSASLSR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BardetSBKZS13, author = {Ana{\"{\i}}s F. Bardet and Jonas Steinmann and Sangeeta Bafna and Juergen A. Knoblich and Julia Zeitlinger and Alexander Stark}, title = {Identification of transcription factor binding sites from ChIP-seq data at high resolution}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2705--2713}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt470}, doi = {10.1093/BIOINFORMATICS/BTT470}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/BardetSBKZS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BarenboimM13, author = {Maxim Barenboim and Thomas Manke}, title = {ChroMoS: an integrated web tool for {SNP} classification, prioritization and functional interpretation}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2197--2198}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt356}, doi = {10.1093/BIOINFORMATICS/BTT356}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/BarenboimM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BartenhagenD13, author = {Christoph Bartenhagen and Martin Dugas}, title = {RSVSim: an R/Bioconductor package for the simulation of structural variations}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1679--1681}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt198}, doi = {10.1093/BIOINFORMATICS/BTT198}, timestamp = {Mon, 01 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/BartenhagenD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BayzidW13, author = {Md. Shamsuzzoha Bayzid and Tandy J. Warnow}, title = {Naive binning improves phylogenomic analyses}, journal = {Bioinform.}, volume = {29}, number = {18}, pages = {2277--2284}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt394}, doi = {10.1093/BIOINFORMATICS/BTT394}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/BayzidW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BeckerYHH13, author = {Jeremie Becker and Christopher Yau and John M. Hancock and Christopher C. Holmes}, title = {NucleoFinder: a statistical approach for the detection of nucleosome positions}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {711--716}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts719}, doi = {10.1093/BIOINFORMATICS/BTS719}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BeckerYHH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BehrKZSDR13, author = {Jonas Behr and Andr{\'{e}} Kahles and Yi Zhong and Vipin T. Sreedharan and Philipp Drewe and Gunnar R{\"{a}}tsch}, title = {{MITIE:} Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2529--2538}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt442}, doi = {10.1093/BIOINFORMATICS/BTT442}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BehrKZSDR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BelinkyBSZRNDSRMSL13, author = {Frida Belinky and Iris Bahir and Gil Stelzer and Shahar Zimmerman and Naomi Rosen and Noam Nativ and Irina Dalah and Tsippi Iny Stein and Noa Rappaport and Toutai Mituyama and Marilyn Safran and Doron Lancet}, title = {Non-redundant compendium of human ncRNA genes in GeneCards}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {255--261}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts676}, doi = {10.1093/BIOINFORMATICS/BTS676}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/BelinkyBSZRNDSRMSL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BeltrameBFC13, author = {Luca Beltrame and Luca Bianco and Paolo Fontana and Duccio Cavalieri}, title = {Pathway Processor 2.0: a web resource for pathway-based analysis of high-throughput data}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1825--1826}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt292}, doi = {10.1093/BIOINFORMATICS/BTT292}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BeltrameBFC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Ben-Tal13, author = {Nir Ben{-}Tal}, title = {Editorial}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1--2}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt282}, doi = {10.1093/BIOINFORMATICS/BTT282}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Ben-Tal13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BergeyWA13, author = {Christina M. Bergey and Andrew M. Watkins and Paramjit S. Arora}, title = {HippDB: a database of readily targeted helical protein-protein interactions}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2806--2807}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt483}, doi = {10.1093/BIOINFORMATICS/BTT483}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BergeyWA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BilginKLCP13, author = {Cemal {\c{C}}agatay Bilgin and Sun Kim and Elle Leung and Hang Chang and Bahram Parvin}, title = {Integrated profiling of three dimensional cell culture models and 3D microscopy}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {3087--3093}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt535}, doi = {10.1093/BIOINFORMATICS/BTT535}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BilginKLCP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BindeaGM13, author = {Gabriela Bindea and J{\'{e}}r{\^{o}}me Galon and Bernhard Mlecnik}, title = {CluePedia Cytoscape plugin: pathway insights using integrated experimental and \emph{in silico} data}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {661--663}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt019}, doi = {10.1093/BIOINFORMATICS/BTT019}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BindeaGM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BirolRJPCTYKBVKPMZMJYRBBRMBJ13, author = {Inan{\c{c}} Birol and Anthony Raymond and Shaun D. Jackman and Stephen Pleasance and Robin Coope and Greg A. Taylor and Macaire Man Saint Yuen and Christopher I. Keeling and Dana Brand and Benjamin P. Vandervalk and Heather Kirk and Pawan Pandoh and Richard A. Moore and Yongjun Zhao and Andrew J. Mungall and Barry Jaquish and Alvin Yanchuk and Carol Ritland and Brian Boyle and Jean Bousquet and Kermit Ritland and John MacKay and J{\"{o}}rg Bohlmann and Steven J. M. Jones}, title = {Assembling the 20 Gb white spruce (\emph{Picea glauca}) genome from whole-genome shotgun sequencing data}, journal = {Bioinform.}, volume = {29}, number = {12}, pages = {1492--1497}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt178}, doi = {10.1093/BIOINFORMATICS/BTT178}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BirolRJPCTYKBVKPMZMJYRBBRMBJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BlanchardMVXGBSFFB13, author = {Alexandre P. Blanchard and Graeme S. V. McDowell and Nico Valenzuela and Hongbin Xu and Sarah Gelbard and Martin Bertrand and Gary W. Slater and Daniel Figeys and Stephen Fai and Steffany A. L. Bennett}, title = {Visualization and Phospholipid Identification (VaLID): online integrated search engine capable of identifying and visualizing glycerophospholipids with given mass}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {284--285}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts662}, doi = {10.1093/BIOINFORMATICS/BTS662}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/BlanchardMVXGBSFFB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BonnevilleJ13, author = {Russell Bonneville and Victor X. Jin}, title = {A hidden Markov model to identify combinatorial epigenetic regulation patterns for estrogen receptor {\(\alpha\)} target genes}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {22--28}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts639}, doi = {10.1093/BIOINFORMATICS/BTS639}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BonnevilleJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BonzanniGFSKMHXG13, author = {Nicola Bonzanni and Abhishek Garg and K. Anton Feenstra and Judith Sch{\"{u}}tte and Sarah Kinston and Diego Miranda{-}Saavedra and Jaap Heringa and Ioannis Xenarios and Berthold G{\"{o}}ttgens}, title = {Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {80--88}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt243}, doi = {10.1093/BIOINFORMATICS/BTT243}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BonzanniGFSKMHXG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BootkrajangK13, author = {Jakramate Bootkrajang and Ata Kab{\'{a}}n}, title = {Classification of mislabelled microarrays using robust sparse logistic regression}, journal = {Bioinform.}, volume = {29}, number = {7}, pages = {870--877}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt078}, doi = {10.1093/BIOINFORMATICS/BTT078}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BootkrajangK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BorgesPNDNLBFBSC13, author = {Diogo B. Lima and Yasset P{\'{e}}rez{-}Riverol and Fabio C. S. Nogueira and Gilberto B. Domont and Jesus Noda and Felipe da Veiga Leprevost and Vladimir Besada and Felipe M. G. Fran{\c{c}}a and Valmir Carneiro Barbosa and Aniel S{\'{a}}nchez and Paulo C. Carvalho}, title = {Effectively addressing complex proteomic search spaces with peptide spectrum matching}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1343--1344}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt106}, doi = {10.1093/BIOINFORMATICS/BTT106}, timestamp = {Tue, 18 May 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/BorgesPNDNLBFBSC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BottomlyWTELDM13, author = {Daniel Bottomly and Beth Wilmot and Jeffrey W. Tyner and Christopher A. Eide and Marc M. Loriaux and Brian J. Druker and Shannon K. McWeeney}, title = {HitWalker: variant prioritization for personalized functional cancer genomics}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {509--510}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt003}, doi = {10.1093/BIOINFORMATICS/BTT003}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/BottomlyWTELDM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Boulesteix13, author = {Anne{-}Laure Boulesteix}, title = {On representative and illustrative comparisons with real data in bioinformatics: response to the letter to the editor by Smith \emph{et al.}}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2664--2666}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt458}, doi = {10.1093/BIOINFORMATICS/BTT458}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Boulesteix13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BreeseL13, author = {Marcus R. Breese and Yunlong Liu}, title = {NGSUtils: a software suite for analyzing and manipulating next-generation sequencing datasets}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {494--496}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts731}, doi = {10.1093/BIOINFORMATICS/BTS731}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BreeseL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BrownBHBMO13, author = {Paul Brown and Laura Baxter and Richard Hickman and Jim Beynon and Jonathan D. Moore and Sascha Ott}, title = {MEME-LaB: motif analysis in clusters}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1696--1697}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt248}, doi = {10.1093/BIOINFORMATICS/BTT248}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BrownBHBMO13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BurkoffVW13, author = {Nikolas S. Burkoff and Csilla V{\'{a}}rnai and David L. Wild}, title = {Predicting protein {\(\beta\)}-sheet contacts using a maximum entropy-based correlated mutation measure}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {580--587}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt005}, doi = {10.1093/BIOINFORMATICS/BTT005}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BurkoffVW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BusbySMGM13, author = {Michele A. Busby and Chip Stewart and Chase A. Miller and Krzysztof R. Grzeda and Gabor T. Marth}, title = {Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {656--657}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt015}, doi = {10.1093/BIOINFORMATICS/BTT015}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BusbySMGM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BusettoHKSDOSB13, author = {Alberto Giovanni Busetto and Alain Hauser and Gabriel Krummenacher and Mikael Sunn{\aa}ker and Sotiris Dimopoulos and Cheng Soon Ong and J{\"{o}}rg Stelling and Joachim M. Buhmann}, title = {Near-optimal experimental design for model selection in systems biology}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2625--2632}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt436}, doi = {10.1093/BIOINFORMATICS/BTT436}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/BusettoHKSDOSB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BuskeBMB13, author = {Fabian A. Buske and Denis C. Bauer and John S. Mattick and Timothy L. Bailey}, title = {Triplex-Inspector: an analysis tool for triplex-mediated targeting of genomic loci}, journal = {Bioinform.}, volume = {29}, number = {15}, pages = {1895--1897}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt315}, doi = {10.1093/BIOINFORMATICS/BTT315}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BuskeBMB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BuskeMMRB13, author = {Orion J. Buske and AshokKumar Manickaraj and Seema Mital and Peter N. Ray and Michael Brudno}, title = {Identification of deleterious synonymous variants in human genomes}, journal = {Bioinform.}, volume = {29}, number = {15}, pages = {1843--1850}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt308}, doi = {10.1093/BIOINFORMATICS/BTT308}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/BuskeMMRB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ButlerLHD13, author = {Jenna L. Butler and Marjorie Elizabeth Osborne Locke and Kathleen A. Hill and Mark Daley}, title = {{HD-CNV:} hotspot detector for copy number variants}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {262--263}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts650}, doi = {10.1093/BIOINFORMATICS/BTS650}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ButlerLHD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CamiloBAFCML13, author = {Esther Camilo and Luiz A. Bovolenta and Marcio Luis Acencio and Jos{\'{e}} L. Rybarczyk Filho and Mauro A. A. Castro and Jos{\'{e}} C. F. Moreira and Ney Lemke}, title = {{GALANT:} a Cytoscape plugin for visualizing data as functional landscapes projected onto biological networks}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2505--2506}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt377}, doi = {10.1093/BIOINFORMATICS/BTT377}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/CamiloBAFCML13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CampagnaTFVV13, author = {Davide Campagna and Andrea Telatin and Claudio Forcato and Nicola Vitulo and Giorgio Valle}, title = {PASS-bis: a bisulfite aligner suitable for whole methylome analysis of Illumina and SOLiD reads}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {268--270}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts675}, doi = {10.1093/BIOINFORMATICS/BTS675}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/CampagnaTFVV13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CannistraciAR13, author = {Carlo Vittorio Cannistraci and Gregorio Alanis{-}Lobato and Timothy Ravasi}, title = {Minimum curvilinearity to enhance topological prediction of protein interactions by network embedding}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {199--209}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt208}, doi = {10.1093/BIOINFORMATICS/BTT208}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/CannistraciAR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CaoXHL13, author = {Dong{-}Sheng Cao and Qing{-}Song Xu and Qian{-}Nan Hu and Yi{-}Zeng Liang}, title = {ChemoPy: freely available python package for computational biology and chemoinformatics}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {1092--1094}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt105}, doi = {10.1093/BIOINFORMATICS/BTT105}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/CaoXHL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CaoXL13, author = {Dong{-}Sheng Cao and Qing{-}Song Xu and Yi{-}Zeng Liang}, title = {propy: a tool to generate various modes of Chou's PseAAC}, journal = {Bioinform.}, volume = {29}, number = {7}, pages = {960--962}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt072}, doi = {10.1093/BIOINFORMATICS/BTT072}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/CaoXL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CaoZ13, author = {Xiaoyi Cao and Sheng Zhong}, title = {Enabling interspecies epigenomic comparison with CEpBrowser}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1223--1225}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt114}, doi = {10.1093/BIOINFORMATICS/BTT114}, timestamp = {Wed, 29 Dec 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/CaoZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Capella-GutierrezG13, author = {Salvador Capella{-}Guti{\'{e}}rrez and Toni Gabald{\'{o}}n}, title = {Measuring guide-tree dependency of inferred gaps in progressive aligners}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {1011--1017}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt095}, doi = {10.1093/BIOINFORMATICS/BTT095}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Capella-GutierrezG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChangB13, author = {Ivan Chang and Pierre Baldi}, title = {A unifying kinetic framework for modeling oxidoreductase-catalyzed reactions}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1299--1307}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt140}, doi = {10.1093/BIOINFORMATICS/BTT140}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChangB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChaudharySLSC13, author = {Safee Ullah Chaudhary and Sung{-}Young Shin and Daewon Lee and Je{-}Hoon Song and Kwang{-}Hyun Cho}, title = {{ELECANS} - an integrated model development environment for multiscale cancer systems biology}, journal = {Bioinform.}, volume = {29}, number = {7}, pages = {957--959}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt063}, doi = {10.1093/BIOINFORMATICS/BTT063}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChaudharySLSC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChavesP13, author = {Rui C. Chaves and Jean{-}Luc Pellequer}, title = {DockAFM: benchmarking protein structures by docking under {AFM} topographs}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3230--3231}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt561}, doi = {10.1093/BIOINFORMATICS/BTT561}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChavesP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChawlaTTLK13, author = {Konika Chawla and Sushil Tripathi and Liv Thommesen and Astrid L{\ae}greid and Martin Kuiper}, title = {TFcheckpoint: a curated compendium of specific DNA-binding {RNA} polymerase {II} transcription factors}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2519--2520}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt432}, doi = {10.1093/BIOINFORMATICS/BTT432}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChawlaTTLK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChenCCW13, author = {Gary K. Chen and Xiao Chang and Christina Curtis and Kai Wang}, title = {Precise inference of copy number alterations in tumor samples from {SNP} arrays}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {2964--2970}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt521}, doi = {10.1093/BIOINFORMATICS/BTT521}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChenCCW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChenCH13, author = {Gwo{-}Liang Chen and Yun{-}Juan Chang and Chun{-}Hway Hsueh}, title = {{PRAP:} an \emph{ab initio} software package for automated genome-wide analysis of {DNA} repeats for prokaryotes}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2683--2689}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt482}, doi = {10.1093/BIOINFORMATICS/BTT482}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChenCH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChenDCA13, author = {Wei{-}Ming Chen and Samuel A. Danziger and Jung{-}Hsien Chiang and John D. Aitchison}, title = {PhosphoChain: a novel algorithm to predict kinase and phosphatase networks from high-throughput expression data}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2435--2444}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt387}, doi = {10.1093/BIOINFORMATICS/BTT387}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChenDCA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChenDW13, author = {Zhi{-}Zhong Chen and Fei Deng and Lusheng Wang}, title = {Exact algorithms for haplotype assembly from whole-genome sequence data}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {1938--1945}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt349}, doi = {10.1093/BIOINFORMATICS/BTT349}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChenDW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChenHCTS13, author = {Jia{-}Shing Chen and Wei{-}Shiang Hung and Hsiang{-}Han Chan and Shaw{-}Jenq Tsai and Hsiao{-}Fang Sunny Sun}, title = {\emph{In silico} identification of oncogenic potential of fyn-related kinase in hepatocellular carcinoma}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {420--427}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts715}, doi = {10.1093/BIOINFORMATICS/BTS715}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChenHCTS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChenI13, author = {Xi Chen and Hemant Ishwaran}, title = {Pathway hunting by random survival forests}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {99--105}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts643}, doi = {10.1093/BIOINFORMATICS/BTS643}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChenI13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChenLHSWC13, author = {Chuming Chen and Zhiwen Li and Hongzhan Huang and Baris E. Suzek and Cathy H. Wu}, title = {A fast Peptide Match service for UniProt Knowledgebase}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2808--2809}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt484}, doi = {10.1093/BIOINFORMATICS/BTT484}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChenLHSWC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChenPHHKP13, author = {Chia{-}Yen Chen and Samuela Pollack and David J. Hunter and Joel Hirschhorn and Peter Kraft and Alkes L. Price}, title = {Improved ancestry inference using weights from external reference panels}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1399--1406}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt144}, doi = {10.1093/BIOINFORMATICS/BTT144}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChenPHHKP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChenQSSHL13, author = {Xiang Chen and Jian{-}Ding Qiu and Shao{-}Ping Shi and Sheng{-}Bao Suo and Shu{-}Yun Huang and Ru{-}Ping Liang}, title = {Incorporating key position and amino acid residue features to identify general and species-specific Ubiquitin conjugation sites}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1614--1622}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt196}, doi = {10.1093/BIOINFORMATICS/BTT196}, timestamp = {Tue, 22 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChenQSSHL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChenSACAOPLLPAZ13, author = {Mengjie Chen and Valentina Svicher and Anna Artese and Giosu{\`{e}} Costa and Claudia Alteri and Francesco Ortuso and Lucia Parrotta and Yang Liu and Chang Liu and Carlo{-}Federico Perno and Stefano Alcaro and Jing Zhang}, title = {Detecting and understanding genetic and structural features in {HIV-1} {B} subtype {V3} underlying {HIV-1} co-receptor usage}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {451--460}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt002}, doi = {10.1093/BIOINFORMATICS/BTT002}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChenSACAOPLLPAZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChenSZ13, author = {Xiaowei Chen and Frank J. Slack and Hongyu Zhao}, title = {Joint analysis of expression profiles from multiple cancers improves the identification of microRNA-gene interactions}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2137--2145}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt341}, doi = {10.1093/BIOINFORMATICS/BTT341}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChenSZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChenY13, author = {Xing Chen and Guiying Yan}, title = {Novel human lncRNA-disease association inference based on lncRNA expression profiles}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2617--2624}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt426}, doi = {10.1093/BIOINFORMATICS/BTT426}, timestamp = {Thu, 11 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChenY13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChenYTTWS13, author = {Yunxin Chen and Hui Yao and Erika J. Thompson and Nizar M. Tannir and John N. Weinstein and Xiaoping Su}, title = {VirusSeq: software to identify viruses and their integration sites using next-generation sequencing of human cancer tissue}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {266--267}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts665}, doi = {10.1093/BIOINFORMATICS/BTS665}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChenYTTWS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChenZWX13, author = {Min Chen and Miao Zang and Xinlei Wang and Guanghua Xiao}, title = {A powerful Bayesian meta-analysis method to integrate multiple gene set enrichment studies}, journal = {Bioinform.}, volume = {29}, number = {7}, pages = {862--869}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt068}, doi = {10.1093/BIOINFORMATICS/BTT068}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChenZWX13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChevenetJPOG13, author = {Fran{\c{c}}ois Chevenet and Matthieu Jung and Martine Peeters and Tulio de Oliveira and Olivier Gascuel}, title = {Searching for virus phylotypes}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {561--570}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt010}, doi = {10.1093/BIOINFORMATICS/BTT010}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChevenetJPOG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChindelevitchMLB13, author = {Leonid Chindelevitch and Cheng{-}Yu Ma and Chung{-}Shou Liao and Bonnie Berger}, title = {Optimizing a global alignment of protein interaction networks}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2765--2773}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt486}, doi = {10.1093/BIOINFORMATICS/BTT486}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChindelevitchMLB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChoiFNGQ13, author = {Hyungwon Choi and Damian Fermin and Alexey I. Nesvizhskii and Debashis Ghosh and Zhaohui S. Qin}, title = {Sparsely correlated hidden Markov models with application to genome-wide location studies}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {533--541}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt012}, doi = {10.1093/BIOINFORMATICS/BTT012}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChoiFNGQ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChokkathukalamJCABB13, author = {Achuthanunni Chokkathukalam and Andris Jankevics and Darren J. Creek and Fiona Achcar and Michael P. Barrett and Rainer Breitling}, title = {mzMatch-ISO: an {R} tool for the annotation and relative quantification of isotope-labelled mass spectrometry data}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {281--283}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts674}, doi = {10.1093/BIOINFORMATICS/BTS674}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChokkathukalamJCABB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChowdhurySHRSS13, author = {Salim Akhter Chowdhury and Stanley Shackney and Kerstin Heselmeyer{-}Haddad and Thomas Ried and Alejandro A. Sch{\"{a}}ffer and Russell Schwartz}, title = {Phylogenetic analysis of multiprobe fluorescence \emph{in situ} hybridization data from tumor cell populations}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {189--198}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt205}, doi = {10.1093/BIOINFORMATICS/BTT205}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChowdhurySHRSS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChristieTB13, author = {Mark R. Christie and Jacob A. Tennessen and Michael S. Blouin}, title = {Bayesian parentage analysis with systematic accountability of genotyping error, missing data and false matching}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {725--732}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt039}, doi = {10.1093/BIOINFORMATICS/BTT039}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChristieTB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChuHCYTLLLCTK13, author = {Hsueh{-}Ting Chu and William W. L. Hsiao and Jen{-}Chih Chen and Tze{-}Jung Yeh and Mong{-}Hsun Tsai and Han Lin and Yen{-}Wenn Liu and Sheng{-}An Lee and Chaur{-}Chin Chen and Theresa Tsao and Cheng{-}Yan Kao}, title = {EBARDenovo: highly accurate \emph{de novo} assembly of RNA-Seq with efficient chimera-detection}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {1004--1010}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt092}, doi = {10.1093/BIOINFORMATICS/BTT092}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChuHCYTLLLCTK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChungEF13, author = {Clement Chung and Andrew Emili and Brendan J. Frey}, title = {Non-parametric Bayesian approach to post-translational modification refinement of predictions from tandem mass spectrometry}, journal = {Bioinform.}, volume = {29}, number = {7}, pages = {821--829}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt056}, doi = {10.1093/BIOINFORMATICS/BTT056}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChungEF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ClarkEFW13, author = {Scott C. Clark and Rob Egan and Peter I. Frazier and Zhong Wang}, title = {{ALE:} a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {435--443}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts723}, doi = {10.1093/BIOINFORMATICS/BTS723}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ClarkEFW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ClarkR13, author = {Wyatt T. Clark and Predrag Radivojac}, title = {Information-theoretic evaluation of predicted ontological annotations}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {53--61}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt228}, doi = {10.1093/BIOINFORMATICS/BTT228}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ClarkR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CoelhoKNOGFSBJM13, author = {Lu{\'{\i}}s Pedro Coelho and Joshua D. Kangas and Armaghan W. Naik and Elvira Osuna{-}Highley and Estelle Glory{-}Afshar and Margaret Fuhrman and Ramanuja Simha and Peter B. Berget and Jonathan W. Jarvik and Robert F. Murphy}, title = {Determining the subcellular location of new proteins from microscope images using local features}, journal = {Bioinform.}, volume = {29}, number = {18}, pages = {2343--2349}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt392}, doi = {10.1093/BIOINFORMATICS/BTT392}, timestamp = {Wed, 12 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/CoelhoKNOGFSBJM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CokelaerPHSS13, author = {Thomas Cokelaer and Dennis Pultz and Lea M. Harder and Jordi Serra{-}Musach and Julio Saez{-}Rodriguez}, title = {BioServices: a common Python package to access biological Web Services programmatically}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3241--3242}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt547}, doi = {10.1093/BIOINFORMATICS/BTT547}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/CokelaerPHSS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CostaMLGR13, author = {Eduardo P. Costa and Gerben Menschaert and Walter Luyten and Kurt De Grave and Jan Ramon}, title = {{PIUS:} peptide identification by unbiased search}, journal = {Bioinform.}, volume = {29}, number = {15}, pages = {1913--1914}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt298}, doi = {10.1093/BIOINFORMATICS/BTT298}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/CostaMLGR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Cronkite-RatcliffP13, author = {Bryce W. Cronkite{-}Ratcliff and Vijay Pande}, title = {MSMExplorer: visualizing Markov state models for biomolecule folding simulations}, journal = {Bioinform.}, volume = {29}, number = {7}, pages = {950--952}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt051}, doi = {10.1093/BIOINFORMATICS/BTT051}, timestamp = {Fri, 22 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/Cronkite-RatcliffP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CrosetOR13, author = {Samuel Croset and John P. Overington and Dietrich Rebholz{-}Schuhmann}, title = {Brain: biomedical knowledge manipulation}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1238--1239}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt109}, doi = {10.1093/BIOINFORMATICS/BTT109}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/CrosetOR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CrowellSBLMIPAS13, author = {Kevin L. Crowell and Gordon W. Slysz and Erin S. Baker and Brian L. LaMarche and Matthew E. Monroe and Yehia M. Ibrahim and Samuel H. Payne and Gordon A. Anderson and Richard D. Smith}, title = {{LC-IMS-MS} Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2804--2805}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt465}, doi = {10.1093/BIOINFORMATICS/BTT465}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/CrowellSBLMIPAS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CurtisPCCM13, author = {Darren S. Curtis and Aaron R. Phillips and Stephen J. Callister and Sean Conlan and Lee Ann McCue}, title = {{SPOCS:} software for predicting and visualizing orthology/paralogy relationships among genomes}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2641--2642}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt454}, doi = {10.1093/BIOINFORMATICS/BTT454}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/CurtisPCCM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DaiTWXWTZ13, author = {Lin Dai and Ming Tian and Jiayan Wu and Jing{-}Fa Xiao and Xumin Wang and Jeffrey P. Townsend and Zhang Zhang}, title = {AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1837--1839}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt284}, doi = {10.1093/BIOINFORMATICS/BTT284}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/DaiTWXWTZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DandSAS13, author = {Nick Dand and Frauke Sprengel and Volker Ahlers and Thomas Schlitt}, title = {BioGranat-IG: a network analysis tool to suggest mechanisms of genetic heterogeneity from exome-sequencing data}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {733--741}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt045}, doi = {10.1093/BIOINFORMATICS/BTT045}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/DandSAS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DanielsGPCBB13, author = {Noah M. Daniels and Andrew Gallant and Jian Peng and Lenore J. Cowen and Michael Baym and Bonnie Berger}, title = {Compressive genomics for protein databases}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {283--290}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt214}, doi = {10.1093/BIOINFORMATICS/BTT214}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/DanielsGPCBB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DanishuddinBKK13, author = {Mohd Danishuddin and Mohd Hassan Baig and Lalima Kaushal and Asad U. Khan}, title = {{BLAD:} {A} comprehensive database of widely circulated beta-lactamases}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2515--2516}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt417}, doi = {10.1093/BIOINFORMATICS/BTT417}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/DanishuddinBKK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DeJesusZSRSI13, author = {Michael A. DeJesus and Yanjia J. Zhang and Christopher M. Sassetti and Eric J. Rubin and James C. Sacchettini and Thomas R. Ioerger}, title = {Bayesian analysis of gene essentiality based on sequencing of transposon insertion libraries}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {695--703}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt043}, doi = {10.1093/BIOINFORMATICS/BTT043}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/DeJesusZSRSI13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DeckardAHHH13, author = {Anastasia Deckard and Ron C. Anafi and John B. Hogenesch and Steven B. Haase and John Harer}, title = {Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3174--3180}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt541}, doi = {10.1093/BIOINFORMATICS/BTT541}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/DeckardAHHH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DegroeveM13, author = {Sven Degroeve and Lennart Martens}, title = {MS\({}^{\mbox{2}}\)PIP: a tool for {MS/MS} peak intensity prediction}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3199--3203}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt544}, doi = {10.1093/BIOINFORMATICS/BTT544}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/DegroeveM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DengMWCZLILM13, author = {Wenjie Deng and Brandon Maust and Dylan H. Westfall and Lennie Chen and Hong Zhao and Brendan B. Larsen and Shyamala Iyer and Yi Liu and James I. Mullins}, title = {Indel and Carryforward Correction {(ICC):} a new analysis approach for processing 454 pyrosequencing data}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2402--2409}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt434}, doi = {10.1093/BIOINFORMATICS/BTT434}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/DengMWCZLILM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DentYN13, author = {Jennifer E. Dent and Xinyi Yang and Christine Nardini}, title = {SPNConverter: a new link between static and dynamic complex network analysis}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2507--2508}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt421}, doi = {10.1093/BIOINFORMATICS/BTT421}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/DentYN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DeorowiczDG13, author = {Sebastian Deorowicz and Agnieszka Danek and Szymon Grabowski}, title = {Genome compression: a novel approach for large collections}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2572--2578}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt460}, doi = {10.1093/BIOINFORMATICS/BTT460}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/DeorowiczDG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DesaiSLL13, author = {Dhwani K. Desai and Harald Schunck and Johannes W. L{\"{o}}ser and Julie LaRoche}, title = {Fragment recruitment on metabolic pathways: comparative metabolic profiling of metagenomes and metatranscriptomes}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {790--791}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts721}, doi = {10.1093/BIOINFORMATICS/BTS721}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/DesaiSLL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DinasarapuGMFMSGGS13, author = {Ashok Reddy Dinasarapu and Shakti Gupta and Mano Ram Maurya and Eoin Fahy and Jun Min and Manish Sud and Merril J. Gersten and Christopher K. Glass and Shankar Subramaniam}, title = {A combined omics study on activated macrophages - enhanced role of STATs in apoptosis, immunity and lipid metabolism}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2735--2743}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt469}, doi = {10.1093/BIOINFORMATICS/BTT469}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/DinasarapuGMFMSGGS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DobinDSDZJBCG13, author = {Alexander Dobin and Carrie A. Davis and Felix Schlesinger and Jorg Drenkow and Chris Zaleski and Sonali Jha and Philippe Batut and Mark Chaisson and Thomas R. Gingeras}, title = {{STAR:} ultrafast universal RNA-seq aligner}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {15--21}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts635}, doi = {10.1093/BIOINFORMATICS/BTS635}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/DobinDSDZJBCG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DojerBPW13, author = {Norbert Dojer and Pawel Bednarz and Agnieszka Podsiadlo and Bartek Wilczynski}, title = {BNFinder2: Faster Bayesian network learning and Bayesian classification}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {2068--2070}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt323}, doi = {10.1093/BIOINFORMATICS/BTT323}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/DojerBPW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DongFSWS13, author = {Guang Qiang Dong and Hao Fan and Dina Schneidman{-}Duhovny and Ben M. Webb and Andrej Sali}, title = {Optimized atomic statistical potentials: assessment of protein interfaces and loops}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3158--3166}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt560}, doi = {10.1093/BIOINFORMATICS/BTT560}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/DongFSWS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DonmezB13, author = {Nilgun Donmez and Michael Brudno}, title = {{SCARPA:} scaffolding reads with practical algorithms}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {428--434}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts716}, doi = {10.1093/BIOINFORMATICS/BTS716}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/DonmezB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DouvilleCKNDSCRK13, author = {Christopher Douville and Hannah Carter and Rick Kim and Noushin Niknafs and Mark Diekhans and Peter D. Stenson and David N. Cooper and Michael C. Ryan and Rachel Karchin}, title = {{CRAVAT:} cancer-related analysis of variants toolkit}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {647--648}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt017}, doi = {10.1093/BIOINFORMATICS/BTT017}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/DouvilleCKNDSCRK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DuanLA13, author = {Qing Duan and Eric Yi Liu and Paul L. Auer and Guosheng Zhang and Ethan M. Lange and Goo Jun and Chris Bizon and Shuo Jiao and Steven Buyske and Nora Franceschini and Chris S. Carlson and Li Hsu and Alex P. Reiner and Ulrike Peters and Jeffrey Haessler and Keith Curtis and Christina L. Wassel and Jennifer G. Robinson and Lisa W. Martin and Christopher A. Haiman and Loic Le Marchand and Tara Cox Matise and Lucia A. Hindorff and Dana C. Crawford and Themistocles L. Assimes and Hyun Min Kang and Gerardo Heiss and Rebecca D. Jackson and Charles Kooperberg and James G. Wilson and Gon{\c{c}}alo R. Abecasis and Kari E. North and Deborah A. Nickerson and Leslie A. Lange and Yun Li}, title = {Imputation of coding variants in African Americans: better performance using data from the exome sequencing project}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2744--2749}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt477}, doi = {10.1093/BIOINFORMATICS/BTT477}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/DuanLA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DuanLCML13, author = {Qing Duan and Eric Yi Liu and Damien C. Croteau{-}Chonka and Karen L. Mohlke and Yun Li}, title = {A comprehensive {SNP} and indel imputability database}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {528--531}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts724}, doi = {10.1093/BIOINFORMATICS/BTS724}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/DuanLCML13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DubchakMPSMBZ13, author = {Inna Dubchak and Matthew Munoz and Alexander Poliakov and Nathan Salomonis and Simon Minovitsky and Rolf Bodmer and Alexander C. Zambon}, title = {Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {2059--2061}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt318}, doi = {10.1093/BIOINFORMATICS/BTT318}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/DubchakMPSMBZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/EinloftANK13, author = {Jens Einloft and J{\"{o}}rg Ackermann and Joachim N{\"{o}}then and Ina Koch}, title = {MonaLisa - visualization and analysis of functional modules in biochemical networks}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1469--1470}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt165}, doi = {10.1093/BIOINFORMATICS/BTT165}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/EinloftANK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ElsworthJB13, author = {Ben Elsworth and Martin O. Jones and Mark L. Blaxter}, title = {Badger - an accessible genome exploration environment}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2788--2789}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt466}, doi = {10.1093/BIOINFORMATICS/BTT466}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ElsworthJB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ErhardDZ13, author = {Florian Erhard and Lars D{\"{o}}lken and Ralf Zimmer}, title = {RIP-chip enrichment analysis}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {77--83}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts631}, doi = {10.1093/BIOINFORMATICS/BTS631}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ErhardDZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/EtheringtonM13, author = {Graham J. Etherington and Daniel MacLean}, title = {SVGenes: a library for rendering genomic features in scalable vector graphic format}, journal = {Bioinform.}, volume = {29}, number = {15}, pages = {1890--1892}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt294}, doi = {10.1093/BIOINFORMATICS/BTT294}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/EtheringtonM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/FacchettiIPA13, author = {Giuseppe Facchetti and Giovanni Iacono and Giovanna De Palo and Claudio Altafini}, title = {A rate-distortion theory for gene regulatory networks and its application to logic gate consistency}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1166--1173}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt116}, doi = {10.1093/BIOINFORMATICS/BTT116}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/FacchettiIPA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/FailmezgerPTF13, author = {Henrik Failmezger and Paurush Praveen and Achim Tresch and Holger Fr{\"{o}}hlich}, title = {Learning gene network structure from time laps cell imaging in RNAi Knock downs}, journal = {Bioinform.}, volume = {29}, number = {12}, pages = {1534--1540}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt179}, doi = {10.1093/BIOINFORMATICS/BTT179}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/FailmezgerPTF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/FangLZGWF13, author = {Yaping Fang and Hui{-}Xin Liu and Ning Zhang and Grace L. Guo and Yu{-}Jui Yvonne Wan and Jianwen Fang}, title = {{NURBS:} a database of experimental and predicted nuclear receptor binding sites of mouse}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {295--297}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts693}, doi = {10.1093/BIOINFORMATICS/BTS693}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/FangLZGWF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/FasoldB13, author = {Mario Fasold and Hans Binder}, title = {AffyRNADegradation: control and correction of {RNA} quality effects in GeneChip expression data}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {129--131}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts629}, doi = {10.1093/BIOINFORMATICS/BTS629}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/FasoldB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/FaureC13, author = {Guilhem Faure and Isabelle Callebaut}, title = {Identification of hidden relationships from the coupling of Hydrophobic Cluster Analysis and Domain Architecture information}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1726--1733}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt271}, doi = {10.1093/BIOINFORMATICS/BTT271}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/FaureC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/FechnerPEMBTB13, author = {Nikolas Fechner and George Papadatos and David A. Evans and John Richard Morphy and Suzanne Clare Brewerton and David A. Thorner and Michael J. Bodkin}, title = {ChEMBLSpace - a graphical explorer of the chemogenomic space covered by the ChEMBL database}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {523--524}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts711}, doi = {10.1093/BIOINFORMATICS/BTS711}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/FechnerPEMBTB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/FeliuW13, author = {Elisenda Feliu and Carsten Wiuf}, title = {A computational method to preclude multistationarity in networks of interacting species}, journal = {Bioinform.}, volume = {29}, number = {18}, pages = {2327--2334}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt400}, doi = {10.1093/BIOINFORMATICS/BTT400}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/FeliuW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/FerreiraHC13, author = {Jo{\~{a}}o D. Ferreira and Janna Hastings and Francisco M. Couto}, title = {Exploiting disjointness axioms to improve semantic similarity measures}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2781--2787}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt491}, doi = {10.1093/BIOINFORMATICS/BTT491}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/FerreiraHC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/FisherPMK13, author = {Ciar{\'{a}}n P. Fisher and Nicholas J. Plant and J. Bernadette Moore and Andrzej M. Kierzek}, title = {{QSSPN:} dynamic simulation of molecular interaction networks describing gene regulation, signalling and whole-cell metabolism in human cells}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3181--3190}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt552}, doi = {10.1093/BIOINFORMATICS/BTT552}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/FisherPMK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/FlassigHSK13, author = {Robert J. Flassig and Sandra Heise and Kai Sundmacher and Steffen Klamt}, title = {An effective framework for reconstructing gene regulatory networks from genetical genomics data}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {246--254}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts679}, doi = {10.1093/BIOINFORMATICS/BTS679}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/FlassigHSK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/FoggK13, author = {Christiana N. Fogg and Diane E. Kovats}, title = {International Society for Computational Biology Honors Goncalo Abecasis with Top Bioinformatics/Computational Biology Award for 2013}, journal = {Bioinform.}, volume = {29}, number = {12}, pages = {1586--1587}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt251}, doi = {10.1093/BIOINFORMATICS/BTT251}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/FoggK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/FongSYGS13, author = {Youyi Fong and Krisztian Sebestyen and Xuesong Yu and Peter Gilbert and Steve Self}, title = {nCal: an {R} package for non-linear calibration}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2653--2654}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt456}, doi = {10.1093/BIOINFORMATICS/BTT456}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/FongSYGS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ForouzmandC13, author = {Elmirasadat Forouzmand and Hamidreza Chitsaz}, title = {The {RNA} Newton polytope and learnability of energy parameters}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {300--307}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt226}, doi = {10.1093/BIOINFORMATICS/BTT226}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ForouzmandC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ForsterFGH13, author = {Samuel C. Forster and Alexander M. Finkel and Jodee A. Gould and Paul J. Hertzog}, title = {RNA-eXpress annotates novel transcript features in RNA-seq data}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {810--812}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt034}, doi = {10.1093/BIOINFORMATICS/BTT034}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ForsterFGH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/FresnoF13, author = {Crist{\'{o}}bal Fresno and Elmer Andr{\'{e}}s Fern{\'{a}}ndez}, title = {RDAVIDWebService: a versatile \emph{R} interface to {DAVID}}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2810--2811}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt487}, doi = {10.1093/BIOINFORMATICS/BTT487}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/FresnoF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/FriedIAKL13, author = {Jake Y. Fried and Martijn P. van Iersel and Mirit I. Aladjem and Kurt W. Kohn and Augustin Luna}, title = {PathVisio-Faceted Search: an exploration tool for multi-dimensional navigation of large pathways}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1465--1466}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt146}, doi = {10.1093/BIOINFORMATICS/BTT146}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/FriedIAKL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/FuJGZBW13, author = {Changhe Fu and Guangxu Jin and Junfeng Gao and Rui Zhu and Efren Ballesteros{-}Villagrana and Stephen T. C. Wong}, title = {DrugMap Central: an on-line query and visualization tool to facilitate drug repositioning studies}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1834--1836}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt279}, doi = {10.1093/BIOINFORMATICS/BTT279}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/FuJGZBW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/FusiLBLS13, author = {Nicol{\'{o}} Fusi and Christoph Lippert and Karsten M. Borgwardt and Neil D. Lawrence and Oliver Stegle}, title = {Detecting regulatory gene-environment interactions with unmeasured environmental factors}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1382--1389}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt148}, doi = {10.1093/BIOINFORMATICS/BTT148}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/FusiLBLS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GallinaBBB13, author = {Anna Maria Gallina and Paola Bisignano and Maurizio Bergamino and Domenico Bordo}, title = {{PLI:} a web-based tool for the comparison of protein-ligand interactions observed on {PDB} structures}, journal = {Bioinform.}, volume = {29}, number = {3}, pages = {395--397}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts691}, doi = {10.1093/BIOINFORMATICS/BTS691}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/GallinaBBB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GambardellaMCCPB13, author = {Gennaro Gambardella and Maria Nicoletta Moretti and Rossella de Cegli and Luca Cardone and Adriano Peron and Diego di Bernardo}, title = {Differential network analysis for the identification of condition-specific pathway activity and regulation}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1776--1785}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt290}, doi = {10.1093/BIOINFORMATICS/BTT290}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/GambardellaMCCPB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GanterBMSP13, author = {Mathias Ganter and Thomas Bernard and S{\'{e}}bastien Moretti and J{\"{o}}rg Stelling and Marco Pagni}, title = {MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {815--816}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt036}, doi = {10.1093/BIOINFORMATICS/BTT036}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GanterBMSP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GaoMRR13, author = {Dadi Gao and Robert Middleton and John E. J. Rasko and William Ritchie}, title = {miREval 2.0: a web tool for simple microRNA prediction in genome sequences}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3225--3226}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt545}, doi = {10.1093/BIOINFORMATICS/BTT545}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GaoMRR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GaoS13, author = {Mu Gao and Jeffrey Skolnick}, title = {APoc: large-scale identification of similar protein pockets}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {597--604}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt024}, doi = {10.1093/BIOINFORMATICS/BTT024}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GaoS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Garcia-GodoyLDM13, author = {Mar{\'{\i}}a Jes{\'{u}}s Garc{\'{\i}}a{-}Godoy and Esteban L{\'{o}}pez{-}Camacho and Ismael Navas{-}Delgado and Jos{\'{e}} Francisco Aldana Montes}, title = {Sharing and executing linked data queries in a collaborative environment}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1663--1670}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt192}, doi = {10.1093/BIOINFORMATICS/BTT192}, timestamp = {Wed, 15 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Garcia-GodoyLDM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GaujouxS13, author = {Renaud Gaujoux and Cathal Seoighe}, title = {CellMix: a comprehensive toolbox for gene expression deconvolution}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2211--2212}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt351}, doi = {10.1093/BIOINFORMATICS/BTT351}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GaujouxS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GeeleherHEGAS13, author = {Paul Geeleher and Lori Hartnett and Laurance J. Egan and Aaron Golden and Raja Affendi Raja Ali and Cathal Seoighe}, title = {Gene-set analysis is severely biased when applied to genome-wide methylation data}, journal = {Bioinform.}, volume = {29}, number = {15}, pages = {1851--1857}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt311}, doi = {10.1093/BIOINFORMATICS/BTT311}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GeeleherHEGAS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GehlenborgNGCP13, author = {Nils Gehlenborg and Michael S. Noble and Gad Getz and Lynda Chin and Peter J. Park}, title = {Nozzle: a report generation toolkit for data analysis pipelines}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {1089--1091}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt085}, doi = {10.1093/BIOINFORMATICS/BTT085}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/GehlenborgNGCP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GfellerMZ13, author = {David Gfeller and Olivier Michielin and Vincent Zoete}, title = {Shaping the interaction landscape of bioactive molecules}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {3073--3079}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt540}, doi = {10.1093/BIOINFORMATICS/BTT540}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/GfellerMZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GilG13, author = {V{\'{\i}}ctor A. Gil and Victor Guallar}, title = {pyRMSD: a Python package for efficient pairwise {RMSD} matrix calculation and handling}, journal = {Bioinform.}, volume = {29}, number = {18}, pages = {2363--2364}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt402}, doi = {10.1093/BIOINFORMATICS/BTT402}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GilG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GillisP13, author = {Jesse A. Gillis and Paul Pavlidis}, title = {Assessing identity, redundancy and confounds in Gene Ontology annotations over time}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {476--482}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts727}, doi = {10.1093/BIOINFORMATICS/BTS727}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GillisP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GiorgiFL13, author = {Federico M. Giorgi and Cristian Del Fabbro and Francesco Licausi}, title = {Comparative study of RNA-seq- and Microarray-derived coexpression networks in \emph{Arabidopsis thaliana}}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {717--724}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt053}, doi = {10.1093/BIOINFORMATICS/BTT053}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GiorgiFL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GitterB13, author = {Anthony Gitter and Ziv Bar{-}Joseph}, title = {Identifying proteins controlling key disease signaling pathways}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {227--236}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt241}, doi = {10.1093/BIOINFORMATICS/BTT241}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GitterB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GiulyKE13, author = {Richard J. Giuly and Keun{-}Young Kim and Mark H. Ellisman}, title = {{DP2:} Distributed 3D image segmentation using micro-labor workforce}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1359--1360}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt154}, doi = {10.1093/BIOINFORMATICS/BTT154}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GiulyKE13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GolanM13, author = {David Golan and Paul Medvedev}, title = {Using state machines to model the Ion Torrent sequencing process and to improve read error rates}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {344--351}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt212}, doi = {10.1093/BIOINFORMATICS/BTT212}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GolanM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GoldbergGSHWZ13, author = {Jonathan M. Goldberg and Allison D. Griggs and Janet L. Smith and Brian J. Haas and Jennifer R. Wortman and Qiandong Zeng}, title = {Kinannote, a computer program to identify and classify members of the eukaryotic protein kinase superfamily}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2387--2394}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt419}, doi = {10.1093/BIOINFORMATICS/BTT419}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GoldbergGSHWZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GoldenM13, author = {Michael Golden and Darren Martin}, title = {{DOOSS:} a tool for visual analysis of data overlaid on secondary structures}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {271--272}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts667}, doi = {10.1093/BIOINFORMATICS/BTS667}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GoldenM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GomezGSVGGMLAdDOVHZPCJ13, author = {John G{\'{o}}mez and Leyla J. Garc{\'{\i}}a and Gustavo A. Salazar and Jose M. Villaveces and Swanand P. Gore and Alexander Garc{\'{\i}}a Castro and Maria Jesus Martin and Guillaume Launay and Rafael Alc{\'{a}}ntara and Noemi del{-}Toro and Marine Dumousseau and Sandra E. Orchard and Sameer Velankar and Henning Hermjakob and Chenggong Zong and Peipei Ping and Manuel Corpas and Rafael C. Jim{\'{e}}nez}, title = {BioJS: an open source JavaScript framework for biological data visualization}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {1103--1104}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt100}, doi = {10.1093/BIOINFORMATICS/BTT100}, timestamp = {Thu, 25 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/GomezGSVGGMLAdDOVHZPCJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GongCLKJGL13, author = {Jiayu Gong and Chaoqian Cai and Xiaofeng Liu and Xin Ku and Hualiang Jiang and Daqi Gao and Honglin Li}, title = {ChemMapper: a versatile web server for exploring pharmacology and chemical structure association based on molecular 3D similarity method}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1827--1829}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt270}, doi = {10.1093/BIOINFORMATICS/BTT270}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GongCLKJGL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GongLCDGLQ13, author = {Jiayu Gong and Xiaofeng Liu and Xianwen Cao and Yanyan Diao and Daqi Gao and Honglin Li and Xuhong Qian}, title = {{PTID:} an integrated web resource and computational tool for agrochemical discovery}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {292--294}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts651}, doi = {10.1093/BIOINFORMATICS/BTS651}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/GongLCDGLQ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GongS13, author = {Ting Gong and Joseph D. Szustakowski}, title = {DeconRNASeq: a statistical framework for deconvolution of heterogeneous tissue samples based on mRNA-Seq data}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {1083--1085}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt090}, doi = {10.1093/BIOINFORMATICS/BTT090}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/GongS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GontarzBW13, author = {Paul M. Gontarz and Jennifer Berger and Chung F. Wong}, title = {SRmapper: a fast and sensitive genome-hashing alignment tool}, journal = {Bioinform.}, volume = {29}, number = {3}, pages = {316--321}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts712}, doi = {10.1093/BIOINFORMATICS/BTS712}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GontarzBW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GonzalezLW13, author = {Alvaro J. Gonz{\'{a}}lez and Li Liao and Cathy H. Wu}, title = {Prediction of contact matrix for protein-protein interaction}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {1018--1025}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt076}, doi = {10.1093/BIOINFORMATICS/BTT076}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/GonzalezLW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GoodS13, author = {Benjamin M. Good and Andrew I. Su}, title = {Crowdsourcing for bioinformatics}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {1925--1933}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt333}, doi = {10.1093/BIOINFORMATICS/BTT333}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GoodS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GordonG13, author = {David Gordon and Phil Green}, title = {\emph{Consed: } a graphical editor for next-generation sequencing}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2936--2937}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt515}, doi = {10.1093/BIOINFORMATICS/BTT515}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GordonG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GrauBP13, author = {Jan Grau and Jens Boch and Stefan Posch}, title = {TALENoffer: genome-wide {TALEN} off-target prediction}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2931--2932}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt501}, doi = {10.1093/BIOINFORMATICS/BTT501}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GrauBP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GreenfieldHB13, author = {Alex Greenfield and Christoph Hafemeister and Richard Bonneau}, title = {Robust data-driven incorporation of prior knowledge into the inference of dynamic regulatory networks}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {1060--1067}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt099}, doi = {10.1093/BIOINFORMATICS/BTT099}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GreenfieldHB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GroveHBVK13, author = {Laurie E. Grove and David R. Hall and Dmitri Beglov and Sandor Vajda and Dima Kozakov}, title = {FTFlex: accounting for binding site flexibility to improve fragment-based identification of druggable hot spots}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1218--1219}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt102}, doi = {10.1093/BIOINFORMATICS/BTT102}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/GroveHBVK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GuW13, author = {Zuguang Gu and Jin Wang}, title = {CePa: an {R} package for finding significant pathways weighted by multiple network centralities}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {658--660}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt008}, doi = {10.1093/BIOINFORMATICS/BTT008}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GuW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GunawardanaN13, author = {Yawwani Gunawardana and Mahesan Niranjan}, title = {Bridging the gap between transcriptome and proteome measurements identifies post-translationally regulated genes}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {3060--3066}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt537}, doi = {10.1093/BIOINFORMATICS/BTT537}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/GunawardanaN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GuoLLSS13, author = {Yan Guo and Jiang Li and Chung{-}I Li and Yu Shyr and David C. Samuels}, title = {MitoSeek: extracting mitochondria information and performing high-throughput mitochondria sequencing analysis}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1210--1211}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt118}, doi = {10.1093/BIOINFORMATICS/BTT118}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GuoLLSS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GuoSSK13, author = {Yufan Guo and Ilona Silins and Ulla Stenius and Anna Korhonen}, title = {Active learning-based information structure analysis of full scientific articles and two applications for biomedical literature review}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1440--1447}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt163}, doi = {10.1093/BIOINFORMATICS/BTT163}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GuoSSK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GurevichSVT13, author = {Alexey A. Gurevich and Vladislav Saveliev and Nikolay Vyahhi and Glenn Tesler}, title = {{QUAST:} quality assessment tool for genome assemblies}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {1072--1075}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt086}, doi = {10.1093/BIOINFORMATICS/BTT086}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GurevichSVT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GuziolowskiVETCSS13, author = {Carito Guziolowski and Santiago Videla and Federica Eduati and Sven Thiele and Thomas Cokelaer and Anne Siegel and Julio Saez{-}Rodriguez}, title = {Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming}, journal = {Bioinform.}, volume = {29}, number = {18}, pages = {2320--2326}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt393}, doi = {10.1093/BIOINFORMATICS/BTT393}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GuziolowskiVETCSS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GuzmanVRPFUR13, author = {Francisco M. Ortu{\~{n}}o Guzman and Olga Valenzuela and Fernando Rojas and H{\'{e}}ctor Pomares and Javier Perez{-}Florido and Jos{\'{e}} M. Urquiza and Ignacio Rojas}, title = {Optimizing multiple sequence alignments using a genetic algorithm based on three objectives: structural information, non-gaps percentage and totally conserved columns}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2112--2121}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt360}, doi = {10.1093/BIOINFORMATICS/BTT360}, timestamp = {Sun, 17 Dec 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GuzmanVRPFUR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GyeneseiSHW13, author = {Attila Gyenesei and Colin A. M. Semple and Chris S. Haley and Wenhua Wei}, title = {Corrigendum of 'High throughput analysis of epistasis in genome-wide association studies with BiForce'}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2667--2668}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt444}, doi = {10.1093/BIOINFORMATICS/BTT444}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GyeneseiSHW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GypasTH13, author = {Foivos Gypas and Georgios N. Tsaousis and Stavros J. Hamodrakas}, title = {mpMoRFsDB: a database of molecular recognition features in membrane proteins}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2517--2518}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt427}, doi = {10.1093/BIOINFORMATICS/BTT427}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GypasTH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HaHL13, author = {Misook Ha and Soondo Hong and Wen{-}Hsiung Li}, title = {Predicting the probability of H3K4me3 occupation at a base pair from the genome sequence context}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1199--1205}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt126}, doi = {10.1093/BIOINFORMATICS/BTT126}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/HaHL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HafezNMZO13, author = {Dina Hafez and Ting Ni and Sayan Mukherjee and Jun Zhu and Uwe Ohler}, title = {Genome-wide identification and predictive modeling of tissue-specific alternative polyadenylation}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {108--116}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt233}, doi = {10.1093/BIOINFORMATICS/BTT233}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HafezNMZO13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Hahn13, author = {Yoonsoo Hahn}, title = {Evidence for the dissemination of cryptic non-coding RNAs transcribed from intronic and intergenic segments by retroposition}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1593--1599}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt258}, doi = {10.1093/BIOINFORMATICS/BTT258}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Hahn13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HakkinenMMFR13, author = {Antti H{\"{a}}kkinen and Anantha Barathi Muthukrishnan and Andr{\'{e}} Mora and Jos{\'{e}} Manuel Fonseca and Andre S. Ribeiro}, title = {CellAging: a tool to study segregation and partitioning in division in cell lineages of \emph{Escherichia coli}}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1708--1709}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt194}, doi = {10.1093/BIOINFORMATICS/BTT194}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HakkinenMMFR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HaldHS13, author = {Bj{\o}rn Olav Hald and Morten Garkier Hendriksen and Preben Graae S{\o}rensen}, title = {Programming strategy for efficient modeling of dynamics in a population of heterogeneous cells}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1292--1298}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt132}, doi = {10.1093/BIOINFORMATICS/BTT132}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HaldHS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HansenGMSM13, author = {Nancy F. Hansen and Jared J. Gartner and Lan Mei and Yardena Samuels and James C. Mullikin}, title = {Shimmer: detection of genetic alterations in tumors using next-generation sequence data}, journal = {Bioinform.}, volume = {29}, number = {12}, pages = {1498--1503}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt183}, doi = {10.1093/BIOINFORMATICS/BTT183}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HansenGMSM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HarrisLBOW13, author = {Midori A. Harris and Antonia Lock and J{\"{u}}rg B{\"{a}}hler and Stephen G. Oliver and Valerie Wood}, title = {{FYPO:} the fission yeast phenotype ontology}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1671--1678}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt266}, doi = {10.1093/BIOINFORMATICS/BTT266}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HarrisLBOW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HartleyS13, author = {Stephen W. Hartley and Paola Sebastiani}, title = {PleioGRiP: genetic risk prediction with pleiotropy}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {1086--1088}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt081}, doi = {10.1093/BIOINFORMATICS/BTT081}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HartleyS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HauboldKHP13, author = {Bernhard Haubold and Linda Krause and Thomas Horn and Peter Pfaffelhuber}, title = {An alignment-free test for recombination}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3121--3127}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt550}, doi = {10.1093/BIOINFORMATICS/BTT550}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HauboldKHP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HaveJ13, author = {Christian Theil Have and Lars Juhl Jensen}, title = {Are graph databases ready for bioinformatics?}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3107--3108}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt549}, doi = {10.1093/BIOINFORMATICS/BTT549}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HaveJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HayesSP13, author = {Wayne B. Hayes and Kai Sun and Natasa Przulj}, title = {Graphlet-based measures are suitable for biological network comparison}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {483--491}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts729}, doi = {10.1093/BIOINFORMATICS/BTS729}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/HayesSP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/He13, author = {Dan He}, title = {IBD-Groupon: an efficient method for detecting group-wise identity-by-descent regions simultaneously in multiple individuals based on pairwise {IBD} relationships}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {162--170}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt237}, doi = {10.1093/BIOINFORMATICS/BTT237}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/He13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HeSSLX13, author = {Jianlin He and Xinxi Sun and Xiaojian Shao and Liji Liang and Hehuang Xie}, title = {{DMEAS:} {DNA} methylation entropy analysis software}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {2044--2045}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt332}, doi = {10.1093/BIOINFORMATICS/BTT332}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HeSSLX13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HebestreitDK13, author = {Katja Hebestreit and Martin Dugas and Hans{-}Ulrich Klein}, title = {Detection of significantly differentially methylated regions in targeted bisulfite sequencing data}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1647--1653}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt263}, doi = {10.1093/BIOINFORMATICS/BTT263}, timestamp = {Mon, 01 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/HebestreitDK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HeckerWT13, author = {Nikolai Hecker and Tim Wiegels and Andrew E. Torda}, title = {{RNA} secondary structure diagrams for very large molecules: RNAfdl}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2941--2942}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt496}, doi = {10.1093/BIOINFORMATICS/BTT496}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HeckerWT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HegerWGPL13, author = {Andreas Heger and Caleb Webber and Martin Goodson and Chris P. Ponting and Gerton Lunter}, title = {{GAT:} a simulation framework for testing the association of genomic intervals}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {2046--2048}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt343}, doi = {10.1093/BIOINFORMATICS/BTT343}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HegerWGPL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HeiderSCH13, author = {Dominik Heider and Robin Senge and Weiwei Cheng and Eyke H{\"{u}}llermeier}, title = {Multilabel classification for exploiting cross-resistance information in {HIV-1} drug resistance prediction}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {1946--1952}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt331}, doi = {10.1093/BIOINFORMATICS/BTT331}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HeiderSCH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HickeyPEZH13, author = {Glenn Hickey and Benedict Paten and Dent Earl and Daniel R. Zerbino and David Haussler}, title = {{HAL:} a hierarchical format for storing and analyzing multiple genome alignments}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1341--1342}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt128}, doi = {10.1093/BIOINFORMATICS/BTT128}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HickeyPEZH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HillD13, author = {Jamie R. Hill and Charlotte M. Deane}, title = {{MP-T:} improving membrane protein alignment for structure prediction}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {54--61}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts640}, doi = {10.1093/BIOINFORMATICS/BTS640}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HillD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HillerWWCMKS13, author = {Karsten Hiller and Andr{\'{e}} Wegner and Daniel Weindl and Thekla Cordes and Christian M. Metallo and Joanne K. Kelleher and Gregory Stephanopoulos}, title = {{NTFD} - a stand-alone application for the non-targeted detection of stable isotope-labeled compounds in {GC/MS} data}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1226--1228}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt119}, doi = {10.1093/BIOINFORMATICS/BTT119}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/HillerWWCMKS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HiltemannMNHPAHTSJS13, author = {Saskia D. Hiltemann and Elizabeth A. McClellan and Jos van Nijnatten and Sebastiaan Horsman and Ivo Palli and Ines Teles Alves and Thomas Hartjes and Jan Trapman and Peter J. van der Spek and Guido Jenster and Andrew Stubbs}, title = {iFUSE: integrated fusion gene explorer}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1700--1701}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt252}, doi = {10.1093/BIOINFORMATICS/BTT252}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/HiltemannMNHPAHTSJS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HoffmanDBOP13, author = {Yonit Hoffman and Dvir Dahary and Debora Rosa Bublik and Moshe Oren and Yitzhak Pilpel}, title = {The majority of endogenous microRNA targets within Alu elements avoid the microRNA machinery}, journal = {Bioinform.}, volume = {29}, number = {7}, pages = {894--902}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt044}, doi = {10.1093/BIOINFORMATICS/BTT044}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HoffmanDBOP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Hohna13, author = {Sebastian H{\"{o}}hna}, title = {Fast simulation of reconstructed phylogenies under global time-dependent birth-death processes}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1367--1374}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt153}, doi = {10.1093/BIOINFORMATICS/BTT153}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Hohna13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HoltonPSM13, author = {Th{\'{e}}r{\`{e}}se A. Holton and Gianluca Pollastri and Denis C. Shields and Catherine Mooney}, title = {CPPpred: prediction of cell penetrating peptides}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {3094--3096}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt518}, doi = {10.1093/BIOINFORMATICS/BTT518}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HoltonPSM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HonMRL13, author = {Jir{\'{\i}} Hon and Tom{\'{a}}s Mart{\'{\i}}nek and Kamil Rajdl and Matej Lexa}, title = {Triplex: an R/Bioconductor package for identification and visualization of potential intramolecular triplex patterns in {DNA} sequences}, journal = {Bioinform.}, volume = {29}, number = {15}, pages = {1900--1901}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt299}, doi = {10.1093/BIOINFORMATICS/BTT299}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HonMRL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HowisonZD13, author = {Mark Howison and Felipe Zapata and Casey W. Dunn}, title = {Toward a statistically explicit understanding of \emph{de novo} sequence assembly}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {2959--2963}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt525}, doi = {10.1093/BIOINFORMATICS/BTT525}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HowisonZD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HsuW13, author = {Kai{-}Cheng Hsu and Feng{-}Sheng Wang}, title = {Fuzzy optimization for detecting enzyme targets of human uric acid metabolism}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3191--3198}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt564}, doi = {10.1093/BIOINFORMATICS/BTT564}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HsuW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HuangCLL13, author = {Jinyan Huang and Jun Chen and Mark Lathrop and Liming Liang}, title = {A tool for {RNA} sequencing sample identity check}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1463--1464}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt155}, doi = {10.1093/BIOINFORMATICS/BTT155}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HuangCLL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HuangLHLMLZLCHZ13, author = {Wenkang Huang and Shaoyong Lu and Zhimin Huang and Xinyi Liu and Linkai Mou and Yu Luo and Yanlong Zhao and Yaqin Liu and Zhongjie Chen and Tingjun Hou and Jian Zhang}, title = {Allosite: a method for predicting allosteric sites}, journal = {Bioinform.}, volume = {29}, number = {18}, pages = {2357--2359}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt399}, doi = {10.1093/BIOINFORMATICS/BTT399}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HuangLHLMLZLCHZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HuangLSFL13, author = {Weichun Huang and Rasiah Loganantharaj and Bryce Schroeder and David Fargo and Leping Li}, title = {{PAVIS:} a tool for Peak Annotation and Visualization}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {3097--3099}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt520}, doi = {10.1093/BIOINFORMATICS/BTT520}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HuangLSFL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HuangPB13, author = {Lin Huang and Victoria Popic and Serafim Batzoglou}, title = {Short read alignment with populations of genomes}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {361--370}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt215}, doi = {10.1093/BIOINFORMATICS/BTT215}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HuangPB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HuangPG13, author = {Ivan K. Huang and Jimin Pei and Nick V. Grishin}, title = {Defining and predicting structurally conserved regions in protein superfamilies}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {175--181}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts682}, doi = {10.1093/BIOINFORMATICS/BTS682}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HuangPG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HuangTP13, author = {Hailiang Huang and Sandeep Tata and Robert J. Prill}, title = {BlueSNP: {R} package for highly scalable genome-wide association studies using Hadoop clusters}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {135--136}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts647}, doi = {10.1093/BIOINFORMATICS/BTS647}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HuangTP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HuntleyLCBLHK13, author = {Melanie A. Huntley and Jessica L. Larson and Christina Chaivorapol and Gabriel Becker and Michael Lawrence and Jason A. Hackney and Joshua S. Kaminker}, title = {ReportingTools: an automated result processing and presentation toolkit for high-throughput genomic analyses}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3220--3221}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt551}, doi = {10.1093/BIOINFORMATICS/BTT551}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HuntleyLCBLHK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/IlieM13, author = {Lucian Ilie and Michael Molnar}, title = {{RACER:} Rapid and accurate correction of errors in reads}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2490--2493}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt407}, doi = {10.1093/BIOINFORMATICS/BTT407}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/IlieM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ImholteSLDG13, author = {Greg C. Imholte and Marie{-}Pier Scott{-}Boyer and Aur{\'{e}}lie Labbe and Christian F. Deschepper and Raphael Gottardo}, title = {iBMQ: a R/Bioconductor package for integrated Bayesian modeling of eQTL data}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2797--2798}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt485}, doi = {10.1093/BIOINFORMATICS/BTT485}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ImholteSLDG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/IndioMSFC13, author = {Valentina Indio and Pier Luigi Martelli and Castrense Savojardo and Piero Fariselli and Rita Casadio}, title = {The prediction of organelle-targeting peptides in eukaryotic proteins with Grammatical-Restrained Hidden Conditional Random Fields}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {981--988}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt089}, doi = {10.1093/BIOINFORMATICS/BTT089}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/IndioMSFC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/IqbalTM13, author = {Zamin Iqbal and Isaac Turner and Gil McVean}, title = {High-throughput microbial population genomics using the Cortex variation assembler}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {275--276}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts673}, doi = {10.1093/BIOINFORMATICS/BTS673}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/IqbalTM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/IsonKJBUMMLPR13, author = {Jon C. Ison and Mat{\'{u}}s Kalas and Inge Jonassen and Dan M. Bolser and Mahmut Uludag and Hamish McWilliam and James Malone and Rodrigo Lopez and Steve Pettifer and Peter M. Rice}, title = {{EDAM:} an ontology of bioinformatics operations, types of data and identifiers, topics and formats}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1325--1332}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt113}, doi = {10.1093/BIOINFORMATICS/BTT113}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/IsonKJBUMMLPR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/IwakiriKAH13, author = {Junichi Iwakiri and Tomoshi Kameda and Kiyoshi Asai and Michiaki Hamada}, title = {Analysis of base-pairing probabilities of {RNA} molecules involved in protein-RNA interactions}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2524--2528}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt453}, doi = {10.1093/BIOINFORMATICS/BTT453}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/IwakiriKAH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/JachietPBLB13, author = {Pierre{-}Alain Jachiet and Romain Pogorelcnik and Anne Berry and Philippe Lopez and Eric Bapteste}, title = {MosaicFinder: identification of fused gene families in sequence similarity networks}, journal = {Bioinform.}, volume = {29}, number = {7}, pages = {837--844}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt049}, doi = {10.1093/BIOINFORMATICS/BTT049}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/JachietPBLB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/JaiswalCSCR13, author = {Varun Jaiswal and Sree K. Chanumolu and Pankaj Sharma and Rajinder S. Chauhan and Chittaranjan Rout}, title = {EpiCombFlu: exploring known influenza epitopes and their combination to design a universal influenza vaccine}, journal = {Bioinform.}, volume = {29}, number = {15}, pages = {1904--1907}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt304}, doi = {10.1093/BIOINFORMATICS/BTT304}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/JaiswalCSCR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/JandaMM13, author = {Jan{-}Oliver Janda and Andreas Meier and Rainer Merkl}, title = {{CLIPS-4D:} a classifier that distinguishes structurally and functionally important residue-positions based on sequence and 3D data}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {3029--3035}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt519}, doi = {10.1093/BIOINFORMATICS/BTT519}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/JandaMM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/JarvstratJGN13, author = {Linnea J{\"{a}}rvstr{\aa}t and Mikael Johansson and Urban Gullberg and Bj{\"{o}}rn Nilsson}, title = {Ultranet: efficient solver for the sparse inverse covariance selection problem in gene network modeling}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {511--512}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts717}, doi = {10.1093/BIOINFORMATICS/BTS717}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/JarvstratJGN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/JayPOHBH13, author = {Nicolas De Jay and Simon Papillon{-}Cavanagh and Catharina Olsen and Nehme Hachem and Gianluca Bontempi and Benjamin Haibe{-}Kains}, title = {mRMRe: an {R} package for parallelized mRMR ensemble feature selection}, journal = {Bioinform.}, volume = {29}, number = {18}, pages = {2365--2368}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt383}, doi = {10.1093/BIOINFORMATICS/BTT383}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/JayPOHBH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/JenkinsFR13, author = {Dafyd J. Jenkins and B{\"{a}}rbel Finkenst{\"{a}}dt and David A. Rand}, title = {A temporal switch model for estimating transcriptional activity in gene expression}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1158--1165}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt111}, doi = {10.1093/BIOINFORMATICS/BTT111}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/JenkinsFR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/JeongKP13, author = {Kyowon Jeong and Sangtae Kim and Pavel A. Pevzner}, title = {UniNovo: a universal tool for \emph{de novo} peptide sequencing}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {1953--1962}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt338}, doi = {10.1093/BIOINFORMATICS/BTT338}, timestamp = {Fri, 20 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/JeongKP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/JiCLG13, author = {Renkai Ji and Qian Cong and Wenlin Li and Nick V. Grishin}, title = {{M2SG:} mapping human disease-related genetic variants to protein sequences and genomic loci}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2953--2954}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt507}, doi = {10.1093/BIOINFORMATICS/BTT507}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/JiCLG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/JiangLB13, author = {Bo Jiang and Jun S. Liu and Martha L. Bulyk}, title = {Bayesian hierarchical model of protein-binding microarray \emph{k}-mer data reduces noise and identifies transcription factor subclasses and preferred \emph{k}-mers}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1390--1398}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt152}, doi = {10.1093/BIOINFORMATICS/BTT152}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/JiangLB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/JiangLWWXOJ13, author = {Wenchao Jiang and Pinghao Li and Shuang Wang and Yuan Wu and Meng Xue and Lucila Ohno{-}Machado and Xiaoqian Jiang}, title = {WebGLORE: a Web service for Grid LOgistic REgression}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3238--3240}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt559}, doi = {10.1093/BIOINFORMATICS/BTT559}, timestamp = {Mon, 19 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/JiangLWWXOJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/JiangZMLCYDWLLWL13, author = {Wei Jiang and Yan Zhang and Fanlin Meng and Baofeng Lian and Xiaowen Chen and Xuexin Yu and Enyu Dai and Shuyuan Wang and Xinyi Liu and Xiang Li and Lihong Wang and Xia Li}, title = {Identification of active transcription factor and miRNA regulatory pathways in Alzheimer's disease}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2596--2602}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt423}, doi = {10.1093/BIOINFORMATICS/BTT423}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/JiangZMLCYDWLLWL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Jimenez-GarciaPF13, author = {Brian Jim{\'{e}}nez{-}Garc{\'{\i}}a and Carles Pons and Juan Fern{\'{a}}ndez{-}Recio}, title = {pyDockWEB: a web server for rigid-body protein-protein docking using electrostatics and desolvation scoring}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1698--1699}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt262}, doi = {10.1093/BIOINFORMATICS/BTT262}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Jimenez-GarciaPF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/JimenezAB13, author = {Rafael C. Jim{\'{e}}nez and Juan P. Albar and Jong Bhak and Marie{-}Claude Blatter and Thomas Blicher and Michelle D. Brazas and Catherine Brooksbank and Aidan Budd and Javier De Las Rivas and Jacqueline Dreyer and Marc A. van Driel and Michael J. Dunn and Pedro L. Fernandes and Celia W. G. van Gelder and Henning Hermjakob and Vassilios Ioannidis and David Phillip Judge and Pascal Kahlem and Eija Korpelainen and Hans{-}Joachim Kraus and Jane E. Loveland and Christine Mayer and Jennifer McDowall and Federico Mor{\'{a}}n and Nicola J. Mulder and Tommi H. Nyr{\"{o}}nen and Kristian Rother and Gustavo A. Salazar and Reinhard Schneider and Allegra Via and Jose M. Villaveces and Ping Yu and Maria Victoria Schneider and Teresa K. Attwood and Manuel Corpas}, title = {iAnn: an event sharing platform for the life sciences}, journal = {Bioinform.}, volume = {29}, number = {15}, pages = {1919--1921}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt306}, doi = {10.1093/BIOINFORMATICS/BTT306}, timestamp = {Thu, 25 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/JimenezAB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/JinLWWC13, author = {Jingjing Jin and Jun Liu and Huan Wang and Limsoon Wong and Nam{-}Hai Chua}, title = {PLncDB: plant long non-coding {RNA} database}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {1068--1071}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt107}, doi = {10.1093/BIOINFORMATICS/BTT107}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/JinLWWC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/JjingoWCLJ13, author = {Daudi Jjingo and Jianrong Wang and Andrew B. Conley and Victoria V. Lunyak and I King Jordan}, title = {Compound \emph{cis}-regulatory elements with both boundary and enhancer sequences in the human genome}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3109--3112}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt542}, doi = {10.1093/BIOINFORMATICS/BTT542}, timestamp = {Sun, 14 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/JjingoWCLJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/JonssonGSJO13, author = {H{\'{a}}kon J{\'{o}}nsson and Aurelien Ginolhac and Mikkel Schubert and Philip L. F. Johnson and Ludovic Orlando}, title = {mapDamage2.0: fast approximate Bayesian estimates of ancient {DNA} damage parameters}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1682--1684}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt193}, doi = {10.1093/BIOINFORMATICS/BTT193}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/JonssonGSJO13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Jost13, author = {Daniel Jost}, title = {Twist-DNA: computing base-pair and bubble opening probabilities in genomic superhelical {DNA}}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2479--2481}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt415}, doi = {10.1093/BIOINFORMATICS/BTT415}, timestamp = {Wed, 04 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Jost13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/JuWHWZ13, author = {Lining Ju and Yijie Dylan Wang and Ying Hung and Chien{-}Fu Jeff Wu and Cheng Zhu}, title = {An HMM-based algorithm for evaluating rates of receptor-ligand binding kinetics from thermal fluctuation data}, journal = {Bioinform.}, volume = {29}, number = {12}, pages = {1511--1518}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt180}, doi = {10.1093/BIOINFORMATICS/BTT180}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/JuWHWZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/JungL13, author = {Jinmyung Jung and Doheon Lee}, title = {Inferring disease association using clinical factors in a combinatorial manner and their use in drug repositioning}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {2017--2023}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt327}, doi = {10.1093/BIOINFORMATICS/BTT327}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/JungL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KacprowskiDA13, author = {Tim Kacprowski and Nadezhda T. Doncheva and Mario Albrecht}, title = {NetworkPrioritizer: a versatile tool for network-based prioritization of candidate disease genes or other molecules}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1471--1473}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt164}, doi = {10.1093/BIOINFORMATICS/BTT164}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KacprowskiDA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KalkatawiRSJKCAB13, author = {Manal Kalkatawi and Farania Rangkuti and Michael Schramm and Boris R. Jankovic and Allan Kamau and Rajesh Chowdhary and John A. C. Archer and Vladimir B. Bajic}, title = {Dragon PolyA Spotter: predictor of poly(A) motifs within human genomic {DNA} sequences}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1484}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt161}, doi = {10.1093/BIOINFORMATICS/BTT161}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/KalkatawiRSJKCAB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KammBLV13, author = {Liina Kamm and Dan Bogdanov and Sven Laur and Jaak Vilo}, title = {A new way to protect privacy in large-scale genome-wide association studies}, journal = {Bioinform.}, volume = {29}, number = {7}, pages = {886--893}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt066}, doi = {10.1093/BIOINFORMATICS/BTT066}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/KammBLV13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KangHXWAL13, author = {Jian Kang and Kuan{-}Chieh Huang and Zheng Xu and Yunfei Wang and Gon{\c{c}}alo R. Abecasis and Yun Li}, title = {AbCD: arbitrary coverage design for sequencing-based genetic studies}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {799--801}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt041}, doi = {10.1093/BIOINFORMATICS/BTT041}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/KangHXWAL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KatayamaTLK13, author = {Shintaro Katayama and Virpi T{\"{o}}h{\"{o}}nen and Sten Linnarsson and Juha Kere}, title = {SAMstrt: statistical test for differential expression in single-cell transcriptome with spike-in normalization}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2943--2945}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt511}, doi = {10.1093/BIOINFORMATICS/BTT511}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KatayamaTLK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KeaneWA13, author = {Thomas M. Keane and Kim Wong and David J. Adams}, title = {RetroSeq: transposable element discovery from next-generation sequencing data}, journal = {Bioinform.}, volume = {29}, number = {3}, pages = {389--390}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts697}, doi = {10.1093/BIOINFORMATICS/BTS697}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KeaneWA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KelleherBE13, author = {Jerome Kelleher and Nicholas H. Barton and Alison M. Etheridge}, title = {Coalescent simulation in continuous space}, journal = {Bioinform.}, volume = {29}, number = {7}, pages = {955--956}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt067}, doi = {10.1093/BIOINFORMATICS/BTT067}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KelleherBE13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KemenaBCMN13, author = {Carsten Kemena and Giovanni Bussotti and Emidio Capriotti and Marc A. Mart{\'{\i}}{-}Renom and C{\'{e}}dric Notredame}, title = {Using tertiary structure for the computation of highly accurate multiple {RNA} alignments with the SARA-Coffee package}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1112--1119}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt096}, doi = {10.1093/BIOINFORMATICS/BTT096}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KemenaBCMN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KesslerNBLNNG13, author = {Nikolas Kessler and Heiko Neuweger and Anja Bonte and Georg Langenk{\"{a}}mper and Karsten Niehaus and Tim W. Nattkemper and Alexander Goesmann}, title = {MeltDB 2.0-advances of the metabolomics software system}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2452--2459}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt414}, doi = {10.1093/BIOINFORMATICS/BTT414}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KesslerNBLNNG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KieferSV13, author = {Patrick Kiefer and Uwe Schmitt and Julia A. Vorholt}, title = {eMZed: an open source framework in Python for rapid and interactive development of {LC/MS} data analysis workflows}, journal = {Bioinform.}, volume = {29}, number = {7}, pages = {963--964}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt080}, doi = {10.1093/BIOINFORMATICS/BTT080}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KieferSV13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KimHC13, author = {Ka{-}Kyung Kim and Juyoung Ham and Sung Wook Chi}, title = {miRTCat: a comprehensive map of human and mouse microRNA target sites including non-canonical nucleation bulges}, journal = {Bioinform.}, volume = {29}, number = {15}, pages = {1898--1899}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt296}, doi = {10.1093/BIOINFORMATICS/BTT296}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KimHC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KimJB13, author = {Sangwoo Kim and Kyowon Jeong and Vineet Bafna}, title = {Wessim: a whole-exome sequencing simulator based on \emph{in silico} exome capture}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {1076--1077}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt074}, doi = {10.1093/BIOINFORMATICS/BTT074}, timestamp = {Fri, 20 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KimJB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KirrbachKRPAL13, author = {Jan Kirrbach and Miriam Krugliak and Christian L. Ried and Philipp Pagel and Isaiah T. Arkin and Dieter Langosch}, title = {Self-interaction of transmembrane helices representing pre-clusters from the human single-span membrane proteins}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1623--1630}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt247}, doi = {10.1093/BIOINFORMATICS/BTT247}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KirrbachKRPAL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KlingenbergALM13, author = {Heiner Klingenberg and Kathrin Petra A{\ss}hauer and Thomas Lingner and Peter Meinicke}, title = {Protein signature-based estimation of metagenomic abundances including all domains of life and viruses}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {973--980}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt077}, doi = {10.1093/BIOINFORMATICS/BTT077}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KlingenbergALM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KnowlesRMG13, author = {David G. Knowles and Maik R{\"{o}}der and Angelika Merkel and Roderic Guig{\'{o}}}, title = {Grape RNA-Seq analysis pipeline environment}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {614--621}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt016}, doi = {10.1093/BIOINFORMATICS/BTT016}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KnowlesRMG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KocakGPP13, author = {Mehmet Kocak and E. Olusegun George and Saumyadipta Pyne and Stanley Pounds}, title = {An empirical Bayes approach for analysis of diverse periodic trends in time-course gene expression data}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {182--188}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts672}, doi = {10.1093/BIOINFORMATICS/BTS672}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KocakGPP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KojimaNMTYSN13, author = {Kaname Kojima and Naoki Nariai and Takahiro Mimori and Mamoru Takahashi and Yumi Yamaguchi{-}Kabata and Yukuto Sato and Masao Nagasaki}, title = {A statistical variant calling approach from pedigree information and local haplotyping with phase informative reads}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2835--2843}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt503}, doi = {10.1093/BIOINFORMATICS/BTT503}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KojimaNMTYSN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KorparS13, author = {Matija Korpar and Mile Sikic}, title = {SW{\#}-GPU-enabled exact alignments on genome scale}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2494--2495}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt410}, doi = {10.1093/BIOINFORMATICS/BTT410}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KorparS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KosinskiBT13, author = {Jan Kosinski and Alessandro Barbato and Anna Tramontano}, title = {MODexplorer: an integrated tool for exploring protein sequence, structure and function relationships}, journal = {Bioinform.}, volume = {29}, number = {7}, pages = {953--954}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt062}, doi = {10.1093/BIOINFORMATICS/BTT062}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KosinskiBT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KoslickiFR13, author = {David Koslicki and Simon Foucart and Gail Rosen}, title = {Quikr: a method for rapid reconstruction of bacterial communities via compressive sensing}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2096--2102}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt336}, doi = {10.1093/BIOINFORMATICS/BTT336}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KoslickiFR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KoteraTYTG13, author = {Masaaki Kotera and Yasuo Tabei and Yoshihiro Yamanishi and Toshiaki Tokimatsu and Susumu Goto}, title = {Supervised \emph{de novo} reconstruction of metabolic pathways from metabolome-scale compound sets}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {135--144}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt244}, doi = {10.1093/BIOINFORMATICS/BTT244}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KoteraTYTG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KramerBKBB13, author = {Frank Kramer and Michaela Bayerlov{\'{a}} and Florian Klemm and Annalen Bleckmann and Tim Bei{\ss}barth}, title = {rBiopaxParser - an {R} package to parse, modify and visualize BioPAX data}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {520--522}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts710}, doi = {10.1093/BIOINFORMATICS/BTS710}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/KramerBKBB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KrauseSRFKKH13, author = {Falko Krause and Marvin Schulz and Ben Ripkens and Max Fl{\"{o}}ttmann and Marcus Krantz and Edda Klipp and Thomas Handorf}, title = {Biographer: web-based editing and rendering of {SBGN} compliant biochemical networks}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1467--1468}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt159}, doi = {10.1093/BIOINFORMATICS/BTT159}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KrauseSRFKKH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KrzeminskiMNCF13, author = {Micka{\"{e}}l Krzeminski and Joseph A. Marsh and Chris Neale and Wing{-}Yiu Choy and Julie D. Forman{-}Kay}, title = {Characterization of disordered proteins with {ENSEMBLE}}, journal = {Bioinform.}, volume = {29}, number = {3}, pages = {398--399}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts701}, doi = {10.1093/BIOINFORMATICS/BTS701}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KrzeminskiMNCF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KshirsagarCK13, author = {Meghana Kshirsagar and Jaime G. Carbonell and Judith Klein{-}Seetharaman}, title = {Multitask learning for host-pathogen protein interactions}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {217--226}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt245}, doi = {10.1093/BIOINFORMATICS/BTT245}, timestamp = {Mon, 31 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/KshirsagarCK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KucukuralOSMC13, author = {Alper K{\"{u}}{\c{c}}{\"{u}}kural and Hakan {\"{O}}zadam and Guramrit Singh and Melissa J. Moore and Can Cenik}, title = {ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2485--2486}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt428}, doi = {10.1093/BIOINFORMATICS/BTT428}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KucukuralOSMC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KumagaiKII13, author = {Masahiko Kumagai and Jungsok Kim and Ryutaro Itoh and Takeshi Itoh}, title = {Tasuke: a web-based visualization program for large-scale resequencing data}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1806--1808}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt295}, doi = {10.1093/BIOINFORMATICS/BTT295}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KumagaiKII13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KunduCB13, author = {Kousik Kundu and Fabrizio Costa and Rolf Backofen}, title = {A graph kernel approach for alignment-free domain-peptide interaction prediction with an application to human {SH3} domains}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {335--343}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt220}, doi = {10.1093/BIOINFORMATICS/BTT220}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KunduCB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KuwaharaFWG13, author = {Hiroyuki Kuwahara and Ming Fan and Suojin Wang and Xin Gao}, title = {A framework for scalable parameter estimation of gene circuit models using structural information}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {98--107}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt232}, doi = {10.1093/BIOINFORMATICS/BTT232}, timestamp = {Thu, 31 Mar 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/KuwaharaFWG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LaguninIRFP13, author = {Alexey Lagunin and Sergey Ivanov and Anastasia V. Rudik and Dmitry Filimonov and Vladimir Poroikov}, title = {DIGEP-Pred: web service for \emph{in silico} prediction of drug-induced gene expression profiles based on structural formula}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {2062--2063}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt322}, doi = {10.1093/BIOINFORMATICS/BTT322}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LaguninIRFP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LaiB13, author = {William K. M. Lai and Michael J. Buck}, title = {An integrative approach to understanding the combinatorial histone code at functional elements}, journal = {Bioinform.}, volume = {29}, number = {18}, pages = {2231--2237}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt382}, doi = {10.1093/BIOINFORMATICS/BTT382}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/LaiB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LanZL13, author = {Alexander Lan and Michal Ziv{-}Ukelson and Esti Yeger Lotem}, title = {A context-sensitive framework for the analysis of human signalling pathways in molecular interaction networks}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {210--216}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt240}, doi = {10.1093/BIOINFORMATICS/BTT240}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LanZL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LangePSSZS13, author = {Kenneth Lange and Jeanette C. Papp and Janet S. Sinsheimer and Ram Sripracha and Hua Zhou and Eric M. Sobel}, title = {Mendel: the Swiss army knife of genetic analysis programs}, journal = {Bioinform.}, volume = {29}, number = {12}, pages = {1568--1570}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt187}, doi = {10.1093/BIOINFORMATICS/BTT187}, timestamp = {Fri, 13 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/LangePSSZS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LarsonF13, author = {Nicholas B. Larson and Brooke L. Fridley}, title = {PurBayes: estimating tumor cellularity and subclonality in next-generation sequencing data}, journal = {Bioinform.}, volume = {29}, number = {15}, pages = {1888--1889}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt293}, doi = {10.1093/BIOINFORMATICS/BTT293}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LarsonF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LayerSRHQ13, author = {Ryan M. Layer and Kevin Skadron and Gabriel Robins and Ira M. Hall and Aaron R. Quinlan}, title = {Binary Interval Search: a scalable algorithm for counting interval intersections}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {1--7}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts652}, doi = {10.1093/BIOINFORMATICS/BTS652}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LayerSRHQ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LeB13, author = {Hai{-}Son Le and Ziv Bar{-}Joseph}, title = {Integrating sequence, expression and interaction data to determine condition-specific miRNA regulation}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {89--97}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt231}, doi = {10.1093/BIOINFORMATICS/BTT231}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LeB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LeGaultD13, author = {Laura H. LeGault and Colin N. Dewey}, title = {Inference of alternative splicing from RNA-Seq data with probabilistic splice graphs}, journal = {Bioinform.}, volume = {29}, number = {18}, pages = {2300--2310}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt396}, doi = {10.1093/BIOINFORMATICS/BTT396}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LeGaultD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LeK13, author = {Duc{-}Hau Le and Yung{-}Keun Kwon}, title = {A coherent feedforward loop design principle to sustain robustness of biological networks}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {630--637}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt026}, doi = {10.1093/BIOINFORMATICS/BTT026}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LeK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LeLTG0SL13, author = {Thuc Duy Le and Lin Liu and Anna Tsykin and Gregory J. Goodall and Bing Liu and Bing{-}Yu Sun and Jiuyong Li}, title = {Inferring microRNA-mRNA causal regulatory relationships from expression data}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {765--771}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt048}, doi = {10.1093/BIOINFORMATICS/BTT048}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/LeLTG0SL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LeamanDL13, author = {Robert Leaman and Rezarta Islamaj Dogan and Zhiyong Lu}, title = {DNorm: disease name normalization with pairwise learning to rank}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2909--2917}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt474}, doi = {10.1093/BIOINFORMATICS/BTT474}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LeamanDL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LedayW13, author = {Gwena{\"{e}}l G. R. Leday and Mark A. van de Wiel}, title = {{PLRS:} a flexible tool for the joint analysis of {DNA} copy number and mRNA expression data}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {1081--1082}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt082}, doi = {10.1093/BIOINFORMATICS/BTT082}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/LedayW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LeeBM13, author = {Woonghee Lee and Arash Bahrami and John L. Markley}, title = {{ADAPT-NMR} Enhancer: complete package for reduced dimensionality in protein {NMR} spectroscopy}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {515--517}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts692}, doi = {10.1093/BIOINFORMATICS/BTS692}, timestamp = {Mon, 30 Oct 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LeeBM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LeeBRFB13, author = {Donghyung Lee and T. Bernard Bigdeli and Brien P. Riley and Ayman H. Fanous and Silviu{-}Alin Bacanu}, title = {{DIST:} direct imputation of summary statistics for unmeasured SNPs}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2925--2927}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt500}, doi = {10.1093/BIOINFORMATICS/BTT500}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/LeeBRFB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LeeC13, author = {Che{-}Yu Lee and Liang Chen}, title = {Alternative polyadenylation sites reveal distinct chromatin accessibility and histone modification in human cell lines}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1713--1717}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt288}, doi = {10.1093/BIOINFORMATICS/BTT288}, timestamp = {Tue, 07 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LeeC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LeeCSED13, author = {Seonjoo Lee and Pauline E. Chugh and Haipeng Shen and R. Eberle and Dirk P. Dittmer}, title = {Poisson factor models with applications to non-normalized microRNA profiling}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1105--1111}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt091}, doi = {10.1093/BIOINFORMATICS/BTT091}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/LeeCSED13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LeeKZT13, author = {Young{-}Suk Lee and Arjun Krishnan and Qian Zhu and Olga G. Troyanskaya}, title = {Ontology-aware classification of tissue and cell-type signals in gene expression profiles across platforms and technologies}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {3036--3044}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt529}, doi = {10.1093/BIOINFORMATICS/BTT529}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LeeKZT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LeePKS13, author = {Hasup Lee and Hahnbeom Park and Junsu Ko and Chaok Seok}, title = {GalaxyGemini: a web server for protein homo-oligomer structure prediction based on similarity}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {1078--1080}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt079}, doi = {10.1093/BIOINFORMATICS/BTT079}, timestamp = {Wed, 08 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/LeePKS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LeeZ13, author = {Yuju Lee and Qing Zhou}, title = {Co-regulation in embryonic stem cells via context-dependent binding of transcription factors}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2162--2168}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt365}, doi = {10.1093/BIOINFORMATICS/BTT365}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LeeZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LeiR13, author = {Chengwei Lei and Jianhua Ruan}, title = {A novel link prediction algorithm for reconstructing protein-protein interaction networks by topological similarity}, journal = {Bioinform.}, volume = {29}, number = {3}, pages = {355--364}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts688}, doi = {10.1093/BIOINFORMATICS/BTS688}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LeiR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LemetreZZ13, author = {Christophe Lemetre and Quanwei Zhang and Zhengdong D. Zhang}, title = {SubNet: a Java application for subnetwork extraction}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2958}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt579}, doi = {10.1093/BIOINFORMATICS/BTT579}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/LemetreZZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LengDTRRSHGSK13, author = {Ning Leng and John A. Dawson and James A. Thomson and Victor Ruotti and Anna I. Rissman and Bart M. G. Smits and Jill D. Haag and Michael N. Gould and Ron M. Stewart and Christina Kendziorski}, title = {EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {1035--1043}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt087}, doi = {10.1093/BIOINFORMATICS/BTT087}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LengDTRRSHGSK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LengDTRRSHGSK13a, author = {Ning Leng and John A. Dawson and James A. Thomson and Victor Ruotti and Anna I. Rissman and Bart M. G. Smits and Jill D. Haag and Michael N. Gould and Ron M. Stewart and Christina Kendziorski}, title = {EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {2073}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt337}, doi = {10.1093/BIOINFORMATICS/BTT337}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LengDTRRSHGSK13a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LeporeTV13, author = {Rosalba Lepore and Anna Tramontano and Allegra Via}, title = {TiPs: a database of therapeutic targets in pathogens and associated tools}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1821--1822}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt289}, doi = {10.1093/BIOINFORMATICS/BTT289}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LeporeTV13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LevineDGWH13, author = {Timothy P. Levine and Rachel D. Daniels and Alberto T. Gatta and Louise H. Wong and Matthew J. Hayes}, title = {The product of C9orf72, a gene strongly implicated in neurodegeneration, is structurally related to {DENN} Rab-GEFs}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {499--503}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts725}, doi = {10.1093/BIOINFORMATICS/BTS725}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LevineDGWH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LiC13, author = {Yang I. Li and Richard R. Copley}, title = {Scaffolding low quality genomes using orthologous protein sequences}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {160--165}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts661}, doi = {10.1093/BIOINFORMATICS/BTS661}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LiC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LiCLLNWB13, author = {Zhenpeng Li and Xiuliang Cui and Fei Li and Peng Li and Ming Ni and Shengqi Wang and Xiaochen Bo}, title = {Exploring the role of human miRNAs in virus-host interactions using systematic overlap analysis}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2375--2379}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt391}, doi = {10.1093/BIOINFORMATICS/BTT391}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/LiCLLNWB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LiKG13, author = {Wenlin Li and Lisa N. Kinch and Nick V. Grishin}, title = {Pclust: protein network visualization highlighting experimental data}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2647--2648}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt451}, doi = {10.1093/BIOINFORMATICS/BTT451}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LiKG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LiLLFZP13, author = {Tao Li and Qian{-}Zhong Li and Shuai Liu and Guo{-}Liang Fan and Yongchun Zuo and Yong Peng}, title = {PreDNA: accurate prediction of DNA-binding sites in proteins by integrating sequence and geometric structure information}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {678--685}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt029}, doi = {10.1093/BIOINFORMATICS/BTT029}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LiLLFZP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LiWYCWC13, author = {Jing{-}Woei Li and Raymond Wan and Chi{-}Shing Yu and Ngai Na Co and Nathalie Wong and Ting{-}Fung Chan}, title = {ViralFusionSeq: accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {649--651}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt011}, doi = {10.1093/BIOINFORMATICS/BTT011}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LiWYCWC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LiberalP13, author = {Rodrigo Liberal and John W. Pinney}, title = {Simple topological properties predict functional misannotations in a metabolic network}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {154--161}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt236}, doi = {10.1093/BIOINFORMATICS/BTT236}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LiberalP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LibinBDIFLTCCLTAWSRBLMWZKAPOAGSOPBCV13, author = {Pieter Libin and Gertjan Beheydt and Koen Deforche and Stijn Imbrechts and Fossie Ferreira and Kristel Van Laethem and Kristof Theys and Ana Patricia Carvalho and Joana Cavaco{-}Silva and Giuseppe Lapadula and Carlo Torti and Matthias Assel and Stefan Wesner and Joke Snoeck and Jean Ruelle and Annelies De Bel and Patrick Lacor and Paul De Munter and Eric Van Wijngaerden and Maurizio Zazzi and Rolf Kaiser and Ahidjo Ayouba and Martine Peeters and Tulio de Oliveira and Luiz Carlos J{\'{u}}nior Alc{\^{a}}ntara and Zehava Grossman and Peter M. A. Sloot and Dan Otelea and Simona Paraschiv and Charles A. Boucher and Ricardo Camacho and Anne{-}Mieke Vandamme}, title = {RegaDB: community-driven data management and analysis for infectious diseases}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1477--1480}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt162}, doi = {10.1093/BIOINFORMATICS/BTT162}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LibinBDIFLTCCLTAWSRBLMWZKAPOAGSOPBCV13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LillacciK13, author = {Gabriele Lillacci and Mustafa Khammash}, title = {The signal within the noise: efficient inference of stochastic gene regulation models using fluorescence histograms and stochastic simulations}, journal = {Bioinform.}, volume = {29}, number = {18}, pages = {2311--2319}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt380}, doi = {10.1093/BIOINFORMATICS/BTT380}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LillacciK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LimSMd13, author = {N{\'{e}}h{\'{e}}my Lim and Yasin Senbabaoglu and George Michailidis and Florence d'Alch{\'{e}}{-}Buc}, title = {OKVAR-Boost: a novel boosting algorithm to infer nonlinear dynamics and interactions in gene regulatory networks}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1416--1423}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt167}, doi = {10.1093/BIOINFORMATICS/BTT167}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LimSMd13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LinHM13, author = {Hao Lin and Lin He and Bin Ma}, title = {A combinatorial approach to the peptide feature matching problem for label-free quantification}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1768--1775}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt274}, doi = {10.1093/BIOINFORMATICS/BTT274}, timestamp = {Wed, 15 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LinHM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LinSRZSZL13, author = {Xueqiu Lin and Deqiang Sun and Benjamin Rodriguez and Qian Zhao and Hanfei Sun and Yong Zhang and Wei Li}, title = {BSeQC: quality control of bisulfite sequencing experiments}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3227--3229}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt548}, doi = {10.1093/BIOINFORMATICS/BTT548}, timestamp = {Mon, 20 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LinSRZSZL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LinVCKGHTSW13, author = {Chiao{-}Feng Lin and Otto Valladares and Daniel M. Childress and Egor Klevak and Evan T. Geller and Yih{-}Chii Hwang and Ellen A. Tsai and Gerard D. Schellenberg and Li{-}San Wang}, title = {DRAW+SneakPeek: Analysis workflow and quality metric management for DNA-seq experiments}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2498--2500}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt422}, doi = {10.1093/BIOINFORMATICS/BTT422}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/LinVCKGHTSW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LindnerKZR13, author = {Martin S. Lindner and Maximilian Kollock and Franziska Zickmann and Bernhard Y. Renard}, title = {Analyzing genome coverage profiles with applications to quality control in metagenomics}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1260--1267}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt147}, doi = {10.1093/BIOINFORMATICS/BTT147}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LindnerKZR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LiscovitchSC13, author = {Noa Liscovitch and Uri Shalit and Gal Chechik}, title = {FuncISH: learning a functional representation of neural {ISH} images}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {36--43}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt207}, doi = {10.1093/BIOINFORMATICS/BTT207}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LiscovitchSC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ListgartenLKXKH13, author = {Jennifer Listgarten and Christoph Lippert and Eun Yong Kang and Jing Xiang and Carl Myers Kadie and David Heckerman}, title = {A powerful and efficient set test for genetic markers that handles confounders}, journal = {Bioinform.}, volume = {29}, number = {12}, pages = {1526--1533}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt177}, doi = {10.1093/BIOINFORMATICS/BTT177}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ListgartenLKXKH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LiuLXYYHSZSLXZDL13, author = {Wei Liu and Chunquan Li and Yanjun Xu and Haixiu Yang and Qianlan Yao and Junwei Han and Desi Shang and Chunlong Zhang and Fei Su and Xiaoxi Li and Yun Xiao and Fan Zhang and Meng Dai and Xia Li}, title = {Topologically inferring risk-active pathways toward precise cancer classification by directed random walk}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2169--2177}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt373}, doi = {10.1093/BIOINFORMATICS/BTT373}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LiuLXYYHSZSLXZDL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LiuLY13, author = {Chia Hsin Liu and Ker{-}Chau Li and Shinsheng Yuan}, title = {Human protein-protein interaction prediction by a novel sequence-based co-evolution method: co-evolutionary divergence}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {92--98}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts620}, doi = {10.1093/BIOINFORMATICS/BTS620}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/LiuLY13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LiuPN13, author = {Gang Liu and Apurv Puri and Sriram Neelamegham}, title = {Glycosylation Network Analysis Toolbox: a MATLAB-based environment for systems glycobiology}, journal = {Bioinform.}, volume = {29}, number = {3}, pages = {404--406}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts703}, doi = {10.1093/BIOINFORMATICS/BTS703}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LiuPN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LiuSS13, author = {Yongchao Liu and Jan Schr{\"{o}}der and Bertil Schmidt}, title = {Musket: a multistage \emph{k-}mer spectrum-based error corrector for Illumina sequence data}, journal = {Bioinform.}, volume = {29}, number = {3}, pages = {308--315}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts690}, doi = {10.1093/BIOINFORMATICS/BTS690}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/LiuSS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LiuVHC13, author = {Xueping Liu and Ingo Vogt and Tanzeem Haque and M{\'{o}}nica Campillos}, title = {HitPick: a web server for hit identification and target prediction of chemical screenings}, journal = {Bioinform.}, volume = {29}, number = {15}, pages = {1910--1912}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt303}, doi = {10.1093/BIOINFORMATICS/BTT303}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LiuVHC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LiuWMWZDYLJ13, author = {Xinyi Liu and Shuyuan Wang and Fanlin Meng and Jizhe Wang and Yan Zhang and Enyu Dai and Xuexin Yu and Xia Li and Wei Jiang}, title = {SM2miR: a database of the experimentally validated small molecules' effects on microRNA expression}, journal = {Bioinform.}, volume = {29}, number = {3}, pages = {409--411}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts698}, doi = {10.1093/BIOINFORMATICS/BTS698}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/LiuWMWZDYLJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LiuYLS13, author = {Ke Liu and Zhangming Yan and Yuchao Li and Zhirong Sun}, title = {Linc2GO: a human LincRNA function annotation resource based on ceRNA hypothesis}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2221--2222}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt361}, doi = {10.1093/BIOINFORMATICS/BTT361}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LiuYLS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LobanovSDSSG13, author = {Michail Yu. Lobanov and Masha Yu. Suvorina and Nikita V. Dovidchenko and Igor V. Sokolovskiy and Alexey K. Surin and Oxana V. Galzitskaya}, title = {A novel web server predicts amino acid residue protection against hydrogen-deuterium exchange}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1375--1381}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt168}, doi = {10.1093/BIOINFORMATICS/BTT168}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LobanovSDSSG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LoboML13, author = {Daniel Lobo and Taylor J. Malone and Michael Levin}, title = {Planform: an application and database of graph-encoded planarian regenerative experiments}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {1098--1100}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt088}, doi = {10.1093/BIOINFORMATICS/BTT088}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LoboML13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LockD13, author = {Eric F. Lock and David B. Dunson}, title = {Bayesian consensus clustering}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2610--2616}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt425}, doi = {10.1093/BIOINFORMATICS/BTT425}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LockD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LongZVFSN13, author = {Quan Long and Qingrun Zhang and Bjarni J. Vilhj{\'{a}}lmsson and Petar Forai and {\"{U}}mit Seren and Magnus Nordborg}, title = {JAWAMix5: an out-of-core HDF5-based java implementation of whole-genome association studies using mixed models}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1220--1222}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt122}, doi = {10.1093/BIOINFORMATICS/BTT122}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LongZVFSN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LopezP13, author = {Daniel Lopez and Florencio Pazos}, title = {{COPRED:} prediction of fold, {GO} molecular function and functional residues at the domain level}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1811--1812}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt283}, doi = {10.1093/BIOINFORMATICS/BTT283}, timestamp = {Sat, 19 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/LopezP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LotiaMDBP13, author = {Samad Lotia and Jason Montojo and Yue Dong and Gary D. Bader and Alexander R. Pico}, title = {Cytoscape App Store}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1350--1351}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt138}, doi = {10.1093/BIOINFORMATICS/BTT138}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LotiaMDBP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LowM13, author = {Diana H. P. Low and Efthymios Motakis}, title = {deltaGseg: macrostate estimation via molecular dynamics simulations and multiscale time series analysis}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2501--2502}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt413}, doi = {10.1093/BIOINFORMATICS/BTT413}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/LowM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LuLODK13, author = {Chen Lu and Jeanne Latourelle and George T. O'Connor and Jos{\'{e}}e Dupuis and Eric D. Kolaczyk}, title = {Network-guided sparse regression modeling for detection of gene-by-gene interactions}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1241--1249}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt139}, doi = {10.1093/BIOINFORMATICS/BTT139}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LuLODK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LuoB13, author = {Weijun Luo and Cory Brouwer}, title = {Pathview: an R/Bioconductor package for pathway-based data integration and visualization}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1830--1831}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt285}, doi = {10.1093/BIOINFORMATICS/BTT285}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LuoB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LutzSHVS13, author = {Benjamin Lutz and Claude Sinner and Geertje Heuermann and Abhinav Verma and Alexander Schug}, title = {eSBMTools 1.0: enhanced native structure-based modeling tools}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2795--2796}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt478}, doi = {10.1093/BIOINFORMATICS/BTT478}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/LutzSHVS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MaLZYLX13, author = {Qin Ma and Bingqiang Liu and Chuan Zhou and Yanbin Yin and Guojun Li and Ying Xu}, title = {An integrated toolkit for accurate prediction and analysis of \emph{cis-}regulatory motifs at a genome scale}, journal = {Bioinform.}, volume = {29}, number = {18}, pages = {2261--2268}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt397}, doi = {10.1093/BIOINFORMATICS/BTT397}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MaLZYLX13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MaWZX13, author = {Jianzhu Ma and Sheng Wang and Feng Zhao and Jinbo Xu}, title = {Protein threading using context-specific alignment potential}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {257--265}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt210}, doi = {10.1093/BIOINFORMATICS/BTT210}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MaWZX13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Magana-MoraAJKACAB13, author = {Arturo Magana{-}Mora and Haitham Ashoor and Boris R. Jankovic and Allan Kamau and Karim Awara and Rajesh Chowdhary and John A. C. Archer and Vladimir B. Bajic}, title = {Dragon {TIS} Spotter: an Arabidopsis-derived predictor of translation initiation sites in plants}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {117--118}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts638}, doi = {10.1093/BIOINFORMATICS/BTS638}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/Magana-MoraAJKACAB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MagocPCLSPTS13, author = {Tanja Magoc and Stephan Pabinger and Stefan Canzar and Xinyue Liu and Qi Su and Daniela Puiu and Luke J. Tallon and Steven L. Salzberg}, title = {{GAGE-B:} an evaluation of genome assemblers for bacterial organisms}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1718--1725}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt273}, doi = {10.1093/BIOINFORMATICS/BTT273}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MagocPCLSPTS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MaguireBWSR13, author = {Eamonn Maguire and Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n and Patricia L. Whetzel and Susanna{-}Assunta Sansone and Philippe Rocca{-}Serra}, title = {OntoMaton: a Bioportal powered ontology widget for Google Spreadsheets}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {525--527}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts718}, doi = {10.1093/BIOINFORMATICS/BTS718}, timestamp = {Thu, 30 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/MaguireBWSR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MaierAE13, author = {Josef Maier and Alexei A. Adzhubei and Wolfgang Egge{-}Jacobsen}, title = {{SAPA} tool: finding protein regions by combination of amino acid composition, scaled profiles, patterns and rules}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2496--2497}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt411}, doi = {10.1093/BIOINFORMATICS/BTT411}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MaierAE13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MaierZK13, author = {Robert Maier and Ralf Zimmer and Robert K{\"{u}}ffner}, title = {A Turing test for artificial expression data}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2603--2609}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt438}, doi = {10.1093/BIOINFORMATICS/BTT438}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MaierZK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MammanaVC13, author = {Alessandro Mammana and Martin Vingron and Ho{-}Ryun Chung}, title = {Inferring nucleosome positions with their histone mark annotation from ChIP data}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2547--2554}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt449}, doi = {10.1093/BIOINFORMATICS/BTT449}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MammanaVC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ManyamICC13, author = {Ganiraju Manyam and Cristina Ivan and George A. Calin and Kevin R. Coombes}, title = {targetHub: a programmable interface for miRNA-gene interactions}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2657--2658}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt439}, doi = {10.1093/BIOINFORMATICS/BTT439}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ManyamICC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MarianiBBS13, author = {Valerio Mariani and Marco Biasini and Alessandro Barbato and Torsten Schwede}, title = {lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2722--2728}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt473}, doi = {10.1093/BIOINFORMATICS/BTT473}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/MarianiBBS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MarkovitsBTWDG13, author = {Alexei Nordell Markovits and Charles Joly Beauparlant and Dominique Toupin and Shengrui Wang and Arnaud Droit and Nicolas Gevry}, title = {{NGS++:} a library for rapid prototyping of epigenomics software tools}, journal = {Bioinform.}, volume = {29}, number = {15}, pages = {1893--1894}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt312}, doi = {10.1093/BIOINFORMATICS/BTT312}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/MarkovitsBTWDG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MarschallHS13, author = {Tobias Marschall and Iman Hajirasouliha and Alexander Sch{\"{o}}nhuth}, title = {{MATE-CLEVER:} Mendelian-inheritance-aware discovery and genotyping of midsize and long indels}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3143--3150}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt556}, doi = {10.1093/BIOINFORMATICS/BTT556}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MarschallHS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MasuzzoHHATM13, author = {Paola Masuzzo and Niels Hulstaert and Lynn Huyck and Christophe Ampe and Marleen Van Troys and Lennart Martens}, title = {CellMissy: a tool for management, storage and analysis of cell migration data produced in wound healing-like assays}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2661--2663}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt437}, doi = {10.1093/BIOINFORMATICS/BTT437}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/MasuzzoHHATM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MatlockZS13, author = {Matthew K. Matlock and Jed Zaretzki and S. Joshua Swamidass}, title = {Scaffold network generator: a tool for mining molecular structures}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2655--2656}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt448}, doi = {10.1093/BIOINFORMATICS/BTT448}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MatlockZS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MatsutaIT13, author = {Yoshihiko Matsuta and Masahiro Ito and Yukako Tohsato}, title = {{ECOH:} An Enzyme Commission number predictor using mutual information and a support vector machine}, journal = {Bioinform.}, volume = {29}, number = {3}, pages = {365--372}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts700}, doi = {10.1093/BIOINFORMATICS/BTS700}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MatsutaIT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MayJS13, author = {John W. May and A. Gordon James and Christoph Steinbeck}, title = {Metingear: a development environment for annotating genome-scale metabolic models}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2213--2215}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt342}, doi = {10.1093/BIOINFORMATICS/BTT342}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MayJS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MazurHGLK13, author = {Adam Mazur and Bj{\"{o}}rn Hammesfahr and Christian Griesinger and Donghan Lee and Martin Kollmar}, title = {ShereKhan - calculating exchange parameters in relaxation dispersion data from {CPMG} experiments}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1819--1820}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt286}, doi = {10.1093/BIOINFORMATICS/BTT286}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/MazurHGLK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/McClellanMSS13, author = {Elizabeth A. McClellan and Perry D. Moerland and Peter J. van der Spek and Andrew Stubbs}, title = {NetWeAvers: an \emph{R} package for integrative biological network analysis with mass spectrometry data}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2946--2947}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt513}, doi = {10.1093/BIOINFORMATICS/BTT513}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/McClellanMSS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/McCoyGHM13, author = {Connor McCoy and Aaron Gallagher and Noah G. Hoffman and Frederick A. Matsen IV}, title = {nestly - a framework for running software with nested parameter choices and aggregating results}, journal = {Bioinform.}, volume = {29}, number = {3}, pages = {387--388}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts696}, doi = {10.1093/BIOINFORMATICS/BTS696}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/McCoyGHM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/McDavidFCDLMRG13, author = {Andrew McDavid and Greg Finak and Pratip K. Chattopadhyay and Maria Dominguez and Laurie Lamoreaux and Steven S. Ma and Mario Roederer and Raphael Gottardo}, title = {Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {461--467}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts714}, doi = {10.1093/BIOINFORMATICS/BTS714}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/McDavidFCDLMRG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/McGowanHHT13, author = {Simon J. McGowan and Jim R. Hughes and Zong{-}Pei Han and Stephen Taylor}, title = {{MIG:} Multi-Image Genome viewer}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2477--2478}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt406}, doi = {10.1093/BIOINFORMATICS/BTT406}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/McGowanHHT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MedlarGSBK13, author = {Alan Medlar and Dorota Glowacka and Horia Stanescu and Kevin Bryson and Robert Kleta}, title = {SwiftLink: parallel {MCMC} linkage analysis using multicore {CPU} and {GPU}}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {413--419}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts704}, doi = {10.1093/BIOINFORMATICS/BTS704}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MedlarGSBK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MehdiSKBB13, author = {Ahmed M. Mehdi and Muhammad Shoaib B. Sehgal and Bostjan Kobe and Timothy L. Bailey and Mikael Bod{\'{e}}n}, title = {DLocalMotif: a discriminative approach for discovering local motifs in protein sequences}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {39--46}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts654}, doi = {10.1093/BIOINFORMATICS/BTS654}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MehdiSKBB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MeiKYLZ13, author = {Jian{-}Ping Mei and Chee Keong Kwoh and Peng Yang and Xiaoli Li and Jie Zheng}, title = {Drug-target interaction prediction by learning from local information and neighbors}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {238--245}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts670}, doi = {10.1093/BIOINFORMATICS/BTS670}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MeiKYLZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MendesLCMBC13, author = {Nuno D. Mendes and Fr{\'{e}}d{\'{e}}ric Lang and Yves{-}Stan Le Cornec and Radu Mateescu and Gr{\'{e}}gory Batt and Claudine Chaouiya}, title = {Composition and abstraction of logical regulatory modules: application to multicellular systems}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {749--757}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt033}, doi = {10.1093/BIOINFORMATICS/BTT033}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MendesLCMBC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MenelaouM13, author = {Androniki Menelaou and Jonathan Marchini}, title = {Genotype calling and phasing using next-generation sequencing reads and a haplotype scaffold}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {84--91}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts632}, doi = {10.1093/BIOINFORMATICS/BTS632}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MenelaouM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MengCRCH13, author = {Jia Meng and Xiaodong Cui and Manjeet K. Rao and Yidong Chen and Yufei Huang}, title = {Exome-based analysis for {RNA} epigenome sequencing data}, journal = {Bioinform.}, volume = {29}, number = {12}, pages = {1565--1567}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt171}, doi = {10.1093/BIOINFORMATICS/BTT171}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MengCRCH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MergetZMS13, author = {Benjamin Merget and David Zilian and Tobias M{\"{u}}ller and Christoph A. Sotriffer}, title = {MycPermCheck: the \emph{Mycobacterium tuberculosis} permeability prediction tool for small molecules}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {62--68}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts641}, doi = {10.1093/BIOINFORMATICS/BTS641}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MergetZMS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MeyerDWY13, author = {Michael J. Meyer and Jishnu Das and Xiujuan Wang and Haiyuan Yu}, title = {INstruct: a database of high-quality 3D structurally resolved protein interactome networks}, journal = {Bioinform.}, volume = {29}, number = {12}, pages = {1577--1579}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt181}, doi = {10.1093/BIOINFORMATICS/BTT181}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MeyerDWY13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MillerAMM13, author = {Chase A. Miller and Jon S. Anthony and Michelle M. Meyer and Gabor T. Marth}, title = {Scribl: an {HTML5} Canvas-based graphics library for visualizing genomic data over the web}, journal = {Bioinform.}, volume = {29}, number = {3}, pages = {381--383}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts677}, doi = {10.1093/BIOINFORMATICS/BTS677}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MillerAMM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MillsP13, author = {Lauren J. Mills and William R. Pearson}, title = {Adjusting scoring matrices to correct overextended alignments}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {3007--3013}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt517}, doi = {10.1093/BIOINFORMATICS/BTT517}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MillsP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MinasCM13, author = {Christopher Minas and Edward W. J. Curry and Giovanni Montana}, title = {A distance-based test of association between paired heterogeneous genomic data}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2555--2563}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt450}, doi = {10.1093/BIOINFORMATICS/BTT450}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MinasCM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MirabelloP13, author = {Claudio Mirabello and Gianluca Pollastri}, title = {Porter, PaleAle 4.0: high-accuracy prediction of protein secondary structure and relative solvent accessibility}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {2056--2058}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt344}, doi = {10.1093/BIOINFORMATICS/BTT344}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MirabelloP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MiwaORRKPA13, author = {Makoto Miwa and Tomoko Ohta and Rafal Rak and Andrew Rowley and Douglas B. Kell and Sampo Pyysalo and Sophia Ananiadou}, title = {A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {44--52}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt227}, doi = {10.1093/BIOINFORMATICS/BTT227}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MiwaORRKPA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MonzonJFP13, author = {Alexander Miguel Monzon and Ezequiel I. Juritz and Mar{\'{\i}}a Silvina Fornasari and Gustavo D. Parisi}, title = {CoDNaS: a database of conformational diversity in the native state of proteins}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2512--2514}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt405}, doi = {10.1093/BIOINFORMATICS/BTT405}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MonzonJFP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MoonJKHHLPK13, author = {Sanghoon Moon and Kwang Su Jung and Young Jin Kim and Mi Yeong Hwang and Kyungsook Han and Jong{-}Young Lee and Kiejung Park and Bong{-}Jo Kim}, title = {{KGVDB:} a population-based genomic map of CNVs tagged by SNPs in Koreans}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1481--1483}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt173}, doi = {10.1093/BIOINFORMATICS/BTT173}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/MoonJKHHLPK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MooneyHHPS13, author = {Catherine Mooney and Niall J. Haslam and Th{\'{e}}r{\`{e}}se A. Holton and Gianluca Pollastri and Denis C. Shields}, title = {PeptideLocator: prediction of bioactive peptides in protein sequences}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1120--1126}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt103}, doi = {10.1093/BIOINFORMATICS/BTT103}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MooneyHHPS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MoralesG13, author = {Hern{\'{a}}n F. Morales and Guillermo Giovambattista}, title = {BioSmalltalk: a pure object system and library for bioinformatics}, journal = {Bioinform.}, volume = {29}, number = {18}, pages = {2355--2356}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt398}, doi = {10.1093/BIOINFORMATICS/BTT398}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MoralesG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MordeletHHEG13, author = {Fantine Mordelet and John Horton and Alexander J. Hartemink and Barbara E. Engelhardt and Raluca Gord{\^{a}}n}, title = {Stability selection for regression-based models of transcription factor-DNA binding specificity}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {117--125}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt221}, doi = {10.1093/BIOINFORMATICS/BTT221}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MordeletHHEG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Moreno-HagelsiebWWE13, author = {Gabriel Moreno{-}Hagelsieb and Zilin Wang and Stephanie Walsh and Aisha ElSherbiny}, title = {Phylogenomic clustering for selecting non-redundant genomes for comparative genomics}, journal = {Bioinform.}, volume = {29}, number = {7}, pages = {947--949}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt064}, doi = {10.1093/BIOINFORMATICS/BTT064}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Moreno-HagelsiebWWE13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Moya-GarciaR13, author = {Aurelio A. Moya{-}Garc{\'{\i}}a and Juan A. G. Ranea}, title = {Insights into polypharmacology from drug-domain associations}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {1934--1937}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt321}, doi = {10.1093/BIOINFORMATICS/BTT321}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/Moya-GarciaR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MullerB13, author = {Arne C. M{\"{u}}ller and Alexander Bockmayr}, title = {Fast thermodynamically constrained flux variability analysis}, journal = {Bioinform.}, volume = {29}, number = {7}, pages = {903--909}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt059}, doi = {10.1093/BIOINFORMATICS/BTT059}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MullerB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MullerRWKKR13, author = {S{\"{o}}ren M{\"{u}}ller and Lukas Rycak and Peter Winter and G{\"{u}}nter Kahl and Ina Koch and Bj{\"{o}}rn Rotter}, title = {omiRas: a Web server for differential expression analysis of miRNAs derived from small RNA-Seq data}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2651--2652}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt457}, doi = {10.1093/BIOINFORMATICS/BTT457}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MullerRWKKR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MurieBLN13, author = {Carl Murie and Caroline Barette and Laurence Lafanech{\`{e}}re and Robert Nadon}, title = {Single assay-wide variance experimental {(SAVE)} design for high-throughput screening}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {3067--3072}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt538}, doi = {10.1093/BIOINFORMATICS/BTT538}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MurieBLN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NaeemRP13, author = {Raeece Naeem and Mamoon Rashid and Arnab Pain}, title = {{READSCAN:} a fast and scalable pathogen discovery program with accurate genome relative abundance estimation}, journal = {Bioinform.}, volume = {29}, number = {3}, pages = {391--392}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts684}, doi = {10.1093/BIOINFORMATICS/BTS684}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/NaeemRP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NagasakiFSSI0M13, author = {Masao Nagasaki and Andr{\'{e}} Fujita and Yayoi Sekiya and Ayumu Saito and Emi Ikeda and Chen Li and Satoru Miyano}, title = {XiP: a computational environment to create, extend and share workflows}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {137--139}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts630}, doi = {10.1093/BIOINFORMATICS/BTS630}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/NagasakiFSSI0M13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NariaiHKN13, author = {Naoki Nariai and Osamu Hirose and Kaname Kojima and Masao Nagasaki}, title = {{TIGAR:} transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference}, journal = {Bioinform.}, volume = {29}, number = {18}, pages = {2292--2299}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt381}, doi = {10.1093/BIOINFORMATICS/BTT381}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/NariaiHKN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NavarroG13, author = {F{\'{a}}bio C. P. Navarro and Pedro A. F. Galante}, title = {RCPedia: a database of retrocopied genes}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1235--1237}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt104}, doi = {10.1093/BIOINFORMATICS/BTT104}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/NavarroG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NavlakhaSBB13, author = {Saket Navlakha and Joseph Suhan and Alison L. Barth and Ziv Bar{-}Joseph}, title = {A high-throughput framework to detect synapses in electron microscopy images}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {9--17}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt222}, doi = {10.1093/BIOINFORMATICS/BTT222}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/NavlakhaSBB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NavratilPBB13, author = {Vincent Navratil and Cl{\'{e}}ment Pontoizeau and Elise Billoir and Benjamin J. Blaise}, title = {{SRV:} an open-source toolbox to accelerate the recovery of metabolic biomarkers and correlations from metabolic phenotyping datasets}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1348--1349}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt136}, doi = {10.1093/BIOINFORMATICS/BTT136}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/NavratilPBB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NawrockiE13, author = {Eric P. Nawrocki and Sean R. Eddy}, title = {Infernal 1.1: 100-fold faster {RNA} homology searches}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2933--2935}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt509}, doi = {10.1093/BIOINFORMATICS/BTT509}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/NawrockiE13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NeyshaburKHA13, author = {Behnam Neyshabur and Ahmadreza Khadem and Somaye Hashemifar and Seyed Shahriar Arab}, title = {{NETAL:} a new graph-based method for global alignment of protein-protein interaction networks}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1654--1662}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt202}, doi = {10.1093/BIOINFORMATICS/BTT202}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/NeyshaburKHA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NijkampPRR13, author = {Jurgen F. Nijkamp and Mihai Pop and Marcel J. T. Reinders and Dick de Ridder}, title = {Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2826--2834}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt502}, doi = {10.1093/BIOINFORMATICS/BTT502}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/NijkampPRR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NimLCWT13, author = {Tri Hieu Nim and Le Luo and Marie{-}V{\'{e}}ronique Cl{\'{e}}ment and Jacob K. White and Lisa Tucker{-}Kellogg}, title = {Systematic parameter estimation in data-rich environments for cell signalling dynamics}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {1044--1051}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt083}, doi = {10.1093/BIOINFORMATICS/BTT083}, timestamp = {Mon, 08 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/NimLCWT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NocqCGLW13, author = {Julie Nocq and Magalie Celton and Patrick Gendron and S{\'{e}}bastien Lemieux and Brian T. Wilhelm}, title = {Harnessing virtual machines to simplify next-generation {DNA} sequencing analysis}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2075--2083}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt352}, doi = {10.1093/BIOINFORMATICS/BTT352}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/NocqCGLW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Noivirt-BrikHUO13, author = {Orly Noivirt{-}Brik and Gershon Hazan and Ron Unger and Yanay Ofran}, title = {Non-local residue-residue contacts in proteins are more conserved than local ones}, journal = {Bioinform.}, volume = {29}, number = {3}, pages = {331--337}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts694}, doi = {10.1093/BIOINFORMATICS/BTS694}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Noivirt-BrikHUO13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NoorASNN13, author = {Amina Noor and Aitzaz Ahmad and Erchin Serpedin and Mohamed N. Nounou and Hazem N. Nounou}, title = {{ROBNCA:} robust network component analysis for recovering transcription factor activities}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2410--2418}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt433}, doi = {10.1093/BIOINFORMATICS/BTT433}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/NoorASNN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NorambuenaCCM13, author = {Tom{\'{a}}s Norambuena and Jorge F. Cares and Emidio Capriotti and Francisco Melo}, title = {WebRASP: a server for computing energy scores to assess the accuracy and stability of {RNA} 3D structures}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2649--2650}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt441}, doi = {10.1093/BIOINFORMATICS/BTT441}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/NorambuenaCCM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NordbergBWW13, author = {Henrik Nordberg and Karan Bhatia and Kai Wang and Zhong Wang}, title = {BioPig: a Hadoop-based analytic toolkit for large-scale sequence data}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {3014--3019}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt528}, doi = {10.1093/BIOINFORMATICS/BTT528}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/NordbergBWW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NovakNPSM13, author = {Petr Nov{\'{a}}k and Pavel Neumann and Jir{\'{\i}} Pech and Jaroslav Steinhaisl and Jir{\'{\i}} Macas}, title = {RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {792--793}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt054}, doi = {10.1093/BIOINFORMATICS/BTT054}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/NovakNPSM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NunesCMO13, author = {Tiago Nunes and David Campos and S{\'{e}}rgio Matos and Jos{\'{e}} Lu{\'{\i}}s Oliveira}, title = {BeCAS: biomedical concept recognition services and visualization}, journal = {Bioinform.}, volume = {29}, number = {15}, pages = {1915--1916}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt317}, doi = {10.1093/BIOINFORMATICS/BTT317}, timestamp = {Thu, 02 Dec 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/NunesCMO13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Nystrom-PerssonIIMNYM13, author = {Johan Nystr{\"{o}}m{-}Persson and Yoshinobu Igarashi and Maori Ito and Mizuki Morita and Noriyuki Nakatsu and Hiroshi Yamada and Kenji Mizuguchi}, title = {Toxygates: interactive toxicity analysis on a hybrid microarray and linked data platform}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {3080--3086}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt531}, doi = {10.1093/BIOINFORMATICS/BTT531}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Nystrom-PerssonIIMNYM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/OConnorLWAB13, author = {Patrick B. F. O'Connor and Gene{-}Wei Li and Jonathan S. Weissman and John F. Atkins and Pavel V. Baranov}, title = {rRNA: mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments}, journal = {Bioinform.}, volume = {29}, number = {12}, pages = {1488--1491}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt184}, doi = {10.1093/BIOINFORMATICS/BTT184}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/OConnorLWAB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/OFallonWC13, author = {Brendan D. O'Fallon and Whitney Wooderchak{-}Donahue and David K. Crockett}, title = {A support vector machine for identification of single-nucleotide polymorphisms from next-generation sequencing data}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1361--1366}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt172}, doi = {10.1093/BIOINFORMATICS/BTT172}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/OFallonWC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/OatesHLMM13, author = {Chris J. Oates and Bryan T. J. Hennessy and Yiling Lu and Gordon B. Mills and Sach Mukherjee}, title = {Network inference using steady-state data and Goldbeter-Koshland kinetics}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {819}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt057}, doi = {10.1093/BIOINFORMATICS/BTT057}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/OatesHLMM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/OconeMS13, author = {Andrea Ocone and Andrew J. Millar and Guido Sanguinetti}, title = {Hybrid regulatory models: a statistically tractable approach to model regulatory network dynamics}, journal = {Bioinform.}, volume = {29}, number = {7}, pages = {910--916}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt069}, doi = {10.1093/BIOINFORMATICS/BTT069}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/OconeMS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/OehmenB13, author = {Christopher S. Oehmen and Douglas J. Baxter}, title = {ScalaBLAST 2.0: rapid and robust {BLAST} calculations on multiprocessor systems}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {797--798}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt013}, doi = {10.1093/BIOINFORMATICS/BTT013}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/OehmenB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/OlimpieriCTM13, author = {Pier Paolo Olimpieri and Anna Chailyan and Anna Tramontano and Paolo Marcatili}, title = {Prediction of site-specific interactions in antibody-antigen complexes: the proABC method and server}, journal = {Bioinform.}, volume = {29}, number = {18}, pages = {2285--2291}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt369}, doi = {10.1093/BIOINFORMATICS/BTT369}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/OlimpieriCTM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/OliveiraCM13, author = {Luiz Felipe Valter de Oliveira and Ana Paula Christoff and Rogerio Margis}, title = {isomiRID: a framework to identify microRNA isoforms}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2521--2523}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt424}, doi = {10.1093/BIOINFORMATICS/BTT424}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/OliveiraCM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/OlivellaGPD13, author = {Mireia Olivella and Angel Gonzalez and Leonardo Pardo and Xavier Deup{\'{\i}}}, title = {Relation between sequence and structure in membrane proteins}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1589--1592}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt249}, doi = {10.1093/BIOINFORMATICS/BTT249}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/OlivellaGPD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/OllionCLEB13, author = {Jean Ollion and Julien Cochennec and Fran{\c{c}}ois Loll and Christophe Escud{\'{e}} and Thomas Boudier}, title = {{TANGO:} a generic tool for high-throughput 3D image analysis for studying nuclear organization}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1840--1841}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt276}, doi = {10.1093/BIOINFORMATICS/BTT276}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/OllionCLEB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/OlshenHSORT13, author = {Adam B. Olshen and Andrew C. Hsieh and Craig R. Stumpf and Richard A. Olshen and Davide Ruggero and Barry S. Taylor}, title = {Assessing gene-level translational control from ribosome profiling}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {2995--3002}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt533}, doi = {10.1093/BIOINFORMATICS/BTT533}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/OlshenHSORT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/OnoAH13, author = {Yukiteru Ono and Kiyoshi Asai and Michiaki Hamada}, title = {{PBSIM:} PacBio reads simulator - toward accurate genome assembly}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {119--121}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts649}, doi = {10.1093/BIOINFORMATICS/BTS649}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/OnoAH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/OrensteinS13, author = {Yaron Orenstein and Ron Shamir}, title = {Design of shortest double-stranded {DNA} sequences covering all \emph{k}-mers with applications to protein-binding microarrays and synthetic enhancers}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {71--79}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt230}, doi = {10.1093/BIOINFORMATICS/BTT230}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/OrensteinS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PaciniIGIKBS13, author = {Clare Pacini and Francesco Iorio and Emanuel J. V. Gon{\c{c}}alves and Murat Iskar and Thomas Klabunde and Peer Bork and Julio Saez{-}Rodriguez}, title = {DvD: An R/Cytoscape pipeline for drug repurposing using public repositories of gene expression data}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {132--134}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts656}, doi = {10.1093/BIOINFORMATICS/BTS656}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PaciniIGIKBS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PagniNPDXGSGG13, author = {Marco Pagni and H{\'{e}}l{\`{e}}ne Niculita{-}Hirzel and Lo{\"{\i}}c Pellissier and Anne Dubuis and Ioannis Xenarios and Antoine Guisan and Ian R. Sanders and J{\'{e}}r{\^{o}}me Goudet and Nicolas Guex}, title = {Density-based hierarchical clustering of pyro-sequences on a large scale - the case of fungal {ITS1}}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1268--1274}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt149}, doi = {10.1093/BIOINFORMATICS/BTT149}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/PagniNPDXGSGG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PakR13, author = {Theodore R. Pak and Frederick P. Roth}, title = {ChromoZoom: a flexible, fluid, web-based genome browser}, journal = {Bioinform.}, volume = {29}, number = {3}, pages = {384--386}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts695}, doi = {10.1093/BIOINFORMATICS/BTS695}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PakR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PalamaraP13, author = {Pier Francesco Palamara and Itsik Pe'er}, title = {Inference of historical migration rates via haplotype sharing}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {180--188}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt239}, doi = {10.1093/BIOINFORMATICS/BTT239}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PalamaraP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PandiniFFK13, author = {Alessandro Pandini and Arianna Fornili and Franca Fraternali and Jens Kleinjung}, title = {GSATools: analysis of allosteric communication and functional local motions using a structural alphabet}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {2053--2055}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt326}, doi = {10.1093/BIOINFORMATICS/BTT326}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PandiniFFK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ParedesMS13, author = {Sur Herrera Paredes and Michael F. Melgar and Praveen Sethupathy}, title = {Promoter-proximal CCCTC-factor binding is associated with an increase in the transcriptional pausing index}, journal = {Bioinform.}, volume = {29}, number = {12}, pages = {1485--1487}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts596}, doi = {10.1093/BIOINFORMATICS/BTS596}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ParedesMS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ParkPKKJJKK13, author = {Hae{-}Min Park and Ju{-}Hyeong Park and Yoon{-}Woo Kim and Kyoung{-}Jin Kim and Hee{-}Jin Jeong and Kyoung{-}Soon Jang and Byung{-}Gee Kim and Yun{-}Gon Kim}, title = {The Xeno-glycomics database {(XDB):} a relational database of qualitative and quantitative pig glycome repertoire}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2950--2952}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt504}, doi = {10.1093/BIOINFORMATICS/BTT504}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ParkPKKJJKK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PasaniucSTGZERCFARCMHRHBH13, author = {Bogdan Pasaniuc and Sriram Sankararaman and Dara G. Torgerson and Christopher Gignoux and Noah Zaitlen and Celeste Eng and William Rodriguez{-}Cintron and Rocio Chapela and Jean G. Ford and Pedro C. Avila and Jose Rodriguez{-}Santana and Gary K. Chen and Loic Le Marchand and Brian E. Henderson and David Reich and Christopher A. Haiman and Esteban Gonz{\`{a}}lez Burchard and Eran Halperin}, title = {Analysis of Latino populations from {GALA} and {MEC} studies reveals genomic loci with biased local ancestry estimation}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1407--1415}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt166}, doi = {10.1093/BIOINFORMATICS/BTT166}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PasaniucSTGZERCFARCMHRHBH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PatroK13, author = {Rob Patro and Carl Kingsford}, title = {Predicting protein interactions via parsimonious network history inference}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {237--246}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt224}, doi = {10.1093/BIOINFORMATICS/BTT224}, timestamp = {Tue, 03 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PatroK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PaullCNSHS13, author = {Evan O. Paull and Daniel E. Carlin and Mario Niepel and Peter K. Sorger and David Haussler and Joshua M. Stuart}, title = {Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE)}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2757--2764}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt471}, doi = {10.1093/BIOINFORMATICS/BTT471}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PaullCNSHS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PavlichinWY13, author = {Dmitri S. Pavlichin and Tsachy Weissman and Golan Yona}, title = {The human genome contracts again}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2199--2202}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt362}, doi = {10.1093/BIOINFORMATICS/BTT362}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PavlichinWY13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PearsonC13, author = {Joseph C. Pearson and Stephen T. Crews}, title = {Twine: display and analysis of \emph{cis}-regulatory modules}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1690--1692}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt264}, doi = {10.1093/BIOINFORMATICS/BTT264}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PearsonC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PedersenYD13, author = {Brent S. Pedersen and Ivana V. Yang and Subhajyoti De}, title = {CruzDB: software for annotation of genomic intervals with {UCSC} genome-browser database}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {3003--3006}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt534}, doi = {10.1093/BIOINFORMATICS/BTT534}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PedersenYD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PengCMRCCGF13, author = {Bo Peng and Huann{-}Sheng Chen and Leah E. Mechanic and Ben Racine and John Clarke and Lauren Clarke and Elizabeth Gillanders and Eric J. Feuer}, title = {Genetic Simulation Resources: a website for the registration and discovery of genetic data simulators}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {1101--1102}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt094}, doi = {10.1093/BIOINFORMATICS/BTT094}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PengCMRCCGF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PengLYLZC13, author = {Yu Peng and Henry C. M. Leung and Siu{-}Ming Yiu and Ming{-}Ju Lv and Xin{-}Guang Zhu and Francis Y. L. Chin}, title = {IDBA-tran: a more robust de novo de Bruijn graph assembler for transcriptomes with uneven expression levels}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {326--334}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt219}, doi = {10.1093/BIOINFORMATICS/BTT219}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PengLYLZC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PerreaultPLBD13, author = {Louis{-}Philippe Lemieux Perreault and Sylvie Provost and Marc{-}Andr{\'{e}} Legault and Amina Barhdadi and Marie{-}Pierre Dub{\'{e}}}, title = {pyGenClean: efficient tool for genetic data clean up before association testing}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1704--1705}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt261}, doi = {10.1093/BIOINFORMATICS/BTT261}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PerreaultPLBD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PervouchineKG13, author = {Dmitri D. Pervouchine and David G. Knowles and Roderic Guig{\'{o}}}, title = {Intron-centric estimation of alternative splicing from RNA-seq data}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {273--274}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts678}, doi = {10.1093/BIOINFORMATICS/BTS678}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PervouchineKG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PetukhKA13, author = {Marharyta Petukh and Taylor Kimmet and Emil Alexov}, title = {{BION} web server: predicting non-specifically bound surface ions}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {805--806}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt032}, doi = {10.1093/BIOINFORMATICS/BTT032}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PetukhKA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PicardiP13, author = {Ernesto Picardi and Graziano Pesole}, title = {REDItools: high-throughput {RNA} editing detection made easy}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1813--1814}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt287}, doi = {10.1093/BIOINFORMATICS/BTT287}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PicardiP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PiechottaD13, author = {Michael Piechotta and Christoph Dieterich}, title = {{ACCUSA2:} multi-purpose {SNV} calling enhanced by probabilistic integration of quality scores}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1809--1810}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt268}, doi = {10.1093/BIOINFORMATICS/BTT268}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PiechottaD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PietzschPTS13, author = {Tobias Pietzsch and Stephan Preibisch and Pavel Tomancak and Stephan Saalfeld}, title = {ImgLib2 - generic image processing in Java}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {298}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts685}, doi = {10.1093/BIOINFORMATICS/BTS685}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/PietzschPTS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PiresMSCM13, author = {Douglas E. V. Pires and Raquel Cardoso de Melo Minardi and Carlos Henrique da Silveira and Frederico F. Campos and Wagner Meira Jr.}, title = {aCSM: noise-free graph-based signatures to large-scale receptor-based ligand prediction}, journal = {Bioinform.}, volume = {29}, number = {7}, pages = {855--861}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt058}, doi = {10.1093/BIOINFORMATICS/BTT058}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/PiresMSCM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PiroMCEK13, author = {Rosario M. Piro and Ivan Molineris and Ferdinando Di Cunto and Roland Eils and Rainer K{\"{o}}nig}, title = {Disease-gene discovery by integration of 3D gene expression and transcription factor binding affinities}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {468--475}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts720}, doi = {10.1093/BIOINFORMATICS/BTS720}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PiroMCEK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Planas-IglesiasMBGO13, author = {Joan Planas{-}Iglesias and Manuel Alejandro Mar{\'{\i}}n{-}L{\'{o}}pez and Jaume Bonet and Javier Garc{\'{\i}}a{-}Garc{\'{\i}}a and Baldo Oliva}, title = {iLoops: a protein-protein interaction prediction server based on structural features}, journal = {Bioinform.}, volume = {29}, number = {18}, pages = {2360--2362}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt401}, doi = {10.1093/BIOINFORMATICS/BTT401}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/Planas-IglesiasMBGO13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PoirelRRKAM13, author = {Christopher L. Poirel and Ahsanur Rahman and Richard R. Rodrigues and Arjun Krishnan and Jacqueline R. Addesa and T. M. Murali}, title = {Reconciling differential gene expression data with molecular interaction networks}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {622--629}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt007}, doi = {10.1093/BIOINFORMATICS/BTT007}, timestamp = {Wed, 27 Dec 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PoirelRRKAM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PopDGRCMO13, author = {Sorin Pop and Alexandre Dufour and Jean{-}Francois Le Garrec and Chiara V. Ragni and Cl{\'{e}}mire Cimper and Sigolene M. Meilhac and Jean{-}Christophe Olivo{-}Marin}, title = {Extracting 3D cell parameters from dense tissue environments: application to the development of the mouse heart}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {772--779}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt027}, doi = {10.1093/BIOINFORMATICS/BTT027}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PopDGRCMO13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PorterB13, author = {Michael S. Porter and Robert G. Beiko}, title = {{SPANNER:} taxonomic assignment of sequences using pyramid matching of similarity profiles}, journal = {Bioinform.}, volume = {29}, number = {15}, pages = {1858--1864}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt313}, doi = {10.1093/BIOINFORMATICS/BTT313}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/PorterB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PoundsCLLZM13, author = {Stan Pounds and Cheng Cheng and Shaoyu Li and Zhifa Liu and Jinghui Zhang and Charles Mullighan}, title = {A genomic random interval model for statistical analysis of genomic lesion data}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2088--2095}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt372}, doi = {10.1093/BIOINFORMATICS/BTT372}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PoundsCLLZM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PowellS13, author = {David R. Powell and Torsten Seemann}, title = {{VAGUE:} a graphical user interface for the Velvet assembler}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {264--265}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts664}, doi = {10.1093/BIOINFORMATICS/BTS664}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PowellS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PronkPSLBASSKSHL13, author = {Sander Pronk and Szil{\'{a}}rd P{\'{a}}ll and Roland Schulz and Per Larsson and P{\"{a}}r Bjelkmar and Rossen Apostolov and Michael R. Shirts and Jeremy C. Smith and Peter M. Kasson and David van der Spoel and Berk Hess and Erik Lindahl}, title = {{GROMACS} 4.5: a high-throughput and highly parallel open source molecular simulation toolkit}, journal = {Bioinform.}, volume = {29}, number = {7}, pages = {845--854}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt055}, doi = {10.1093/BIOINFORMATICS/BTT055}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PronkPSLBASSKSHL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Pruteanu-MaliniciMO13, author = {Iulian Pruteanu{-}Malinici and William H. Majoros and Uwe Ohler}, title = {Automated annotation of gene expression image sequences via non-parametric factor analysis and conditional random fields}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {27--35}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt206}, doi = {10.1093/BIOINFORMATICS/BTT206}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Pruteanu-MaliniciMO13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PrzydzialBKVS13, author = {Magdalena Przydzial and Barun Bhhatarai and Amar Koleti and Uma Vempati and Stephan C. Sch{\"{u}}rer}, title = {{GPCR} ontology: development and application of a {G} protein-coupled receptor pharmacology knowledge framework}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3211--3219}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt565}, doi = {10.1093/BIOINFORMATICS/BTT565}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PrzydzialBKVS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PurdomHGQCS13, author = {Elizabeth Purdom and Christine Ho and Catherine S. Grasso and Michael Quist and Raymond J. Cho and Paul T. Spellman}, title = {Methods and challenges in timing chromosomal abnormalities within cancer samples}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3113--3120}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt546}, doi = {10.1093/BIOINFORMATICS/BTT546}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PurdomHGQCS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/QuZSHS13, author = {Jianghan Qu and Meng Zhou and Qiang Song and Elizabeth E. Hong and Andrew D. Smith}, title = {{MLML:} consistent simultaneous estimates of {DNA} methylation and hydroxymethylation}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2645--2646}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt459}, doi = {10.1093/BIOINFORMATICS/BTT459}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/QuZSHS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RaczyPSCKMCKKLLST13, author = {Come Raczy and Roman Petrovski and Christopher T. Saunders and Ilya Chorny and Semyon Kruglyak and Elliott H. Margulies and Han{-}Yu Chuang and Morten K{\"{a}}llberg and Swathi A. Kumar and Arnold Liao and Kristina M. Little and Michael P. Str{\"{o}}mberg and Stephen W. Tanner}, title = {Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {2041--2043}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt314}, doi = {10.1093/BIOINFORMATICS/BTT314}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RaczyPSCKMCKKLLST13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RajaramanTC13, author = {Ashok Rajaraman and Eric Tannier and C{\'{e}}dric Chauve}, title = {{FPSAC:} fast phylogenetic scaffolding of ancient contigs}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {2987--2994}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt527}, doi = {10.1093/BIOINFORMATICS/BTT527}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RajaramanTC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RakitschLSB13, author = {Barbara Rakitsch and Christoph Lippert and Oliver Stegle and Karsten M. Borgwardt}, title = {A Lasso multi-marker mixed model for association mapping with population structure correction}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {206--214}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts669}, doi = {10.1093/BIOINFORMATICS/BTS669}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RakitschLSB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RamachandranPPP13, author = {Parameswaran Ramachandran and Gareth A. Palidwor and Christopher J. Porter and Theodore J. Perkins}, title = {MaSC: mappability-sensitive cross-correlation for estimating mean fragment length of single-end short-read sequencing data}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {444--450}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt001}, doi = {10.1093/BIOINFORMATICS/BTT001}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RamachandranPPP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RashidRRA13, author = {Mamunur Rashid and Carla Daniela Robles{-}Espinoza and Alistair G. Rust and David J. Adams}, title = {Cake: a bioinformatics pipeline for the integrated analysis of somatic variants in cancer genomes}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2208--2210}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt371}, doi = {10.1093/BIOINFORMATICS/BTT371}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/RashidRRA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RastasPHLA13, author = {Pasi Rastas and Lars Paulin and Ilkka Hanski and Rainer Lehtonen and Petri Auvinen}, title = {Lep-MAP: fast and accurate linkage map construction for large {SNP} datasets}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3128--3134}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt563}, doi = {10.1093/BIOINFORMATICS/BTT563}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RastasPHLA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RatheJSEWPOL13, author = {Susan K. Rathe and James E. Johnson and Kevin A. T. Silverstein and Jesse J. Erdmann and Adrienne L. Watson and Flavia E. Popescu and John R. Ohlfest and David A. Largaespada}, title = {MMuFLR: missense mutation and frameshift location reporter}, journal = {Bioinform.}, volume = {29}, number = {18}, pages = {2353--2354}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt385}, doi = {10.1093/BIOINFORMATICS/BTT385}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RatheJSEWPOL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RauGCJ13, author = {Andrea Rau and M{\'{e}}lina Gallopin and Gilles Celeux and Florence Jaffr{\'{e}}zic}, title = {Data-based filtering for replicated high-throughput transcriptome sequencing experiments}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2146--2152}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt350}, doi = {10.1093/BIOINFORMATICS/BTT350}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RauGCJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ReeseATAVAKE13, author = {Sarah E. Reese and Kellie J. Archer and Terry M. Therneau and Elizabeth J. Atkinson and Celine M. Vachon and Mariza de Andrade and Jean{-}Pierre A. Kocher and Jeanette E. Eckel{-}Passow}, title = {A new statistic for identifying batch effects in high-throughput genomic data that uses guided principal component analysis}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2877--2883}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt480}, doi = {10.1093/BIOINFORMATICS/BTT480}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ReeseATAVAKE13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ReifSLWWCJR13, author = {David M. Reif and Myroslav Sypa and Eric F. Lock and Fred A. Wright and Ander Wilson and Tommy Cathey and Richard S. Judson and Ivan Rusyn}, title = {ToxPi {GUI:} an interactive visualization tool for transparent integration of data from diverse sources of evidence}, journal = {Bioinform.}, volume = {29}, number = {3}, pages = {402--403}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts686}, doi = {10.1093/BIOINFORMATICS/BTS686}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ReifSLWWCJR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ReinharzPW13, author = {Vladimir Reinharz and Yann Ponty and J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl}, title = {A weighted sampling algorithm for the design of {RNA} sequences with targeted secondary structure and nucleotide distribution}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {308--315}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt217}, doi = {10.1093/BIOINFORMATICS/BTT217}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ReinharzPW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ReisfeldILWRM13, author = {Brad Reisfeld and Jaime H. Ivy and Michael A. Lyons and Jesse M. Wright and Justin L. Rogers and Arthur N. Mayeno}, title = {DoseSim: a tool for pharmacokinetic/pharmacodynamic analysis and dose reconstruction}, journal = {Bioinform.}, volume = {29}, number = {3}, pages = {400--401}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts671}, doi = {10.1093/BIOINFORMATICS/BTS671}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ReisfeldILWRM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ReizKPM13, author = {Be{\'{a}}ta Reiz and Attila Kert{\'{e}}sz{-}Farkas and S{\'{a}}ndor Pongor and Michael P. Myers}, title = {Chemical rule-based filtering of {MS/MS} spectra}, journal = {Bioinform.}, volume = {29}, number = {7}, pages = {925--932}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt061}, doi = {10.1093/BIOINFORMATICS/BTT061}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ReizKPM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RemeHTK13, author = {Thierry R{\`{e}}me and Dirk Hose and Charles Theillet and Bernard Klein}, title = {Modeling risk stratification in human cancer}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1149--1157}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt124}, doi = {10.1093/BIOINFORMATICS/BTT124}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/RemeHTK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RenL13, author = {Guomin Ren and Zhihua Liu}, title = {NetCAD: a network analysis tool for coronary artery disease-associated {PPI} network}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {279--280}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts666}, doi = {10.1093/BIOINFORMATICS/BTS666}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/RenL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RenSSDR13, author = {Jie Ren and Kai Song and Fengzhu Sun and Minghua Deng and Gesine Reinert}, title = {Multiple alignment-free sequence comparison}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2690--2698}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt462}, doi = {10.1093/BIOINFORMATICS/BTT462}, timestamp = {Thu, 09 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/RenSSDR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RenaudKSK13, author = {Gabriel Renaud and Martin Kircher and Udo Stenzel and Janet Kelso}, title = {freeIbis: an efficient basecaller with calibrated quality scores for Illumina sequencers}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1208--1209}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt117}, doi = {10.1093/BIOINFORMATICS/BTT117}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RenaudKSK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RezolaPFPSRP13, author = {Alberto Rezola and Jon Pey and Luis F. de Figueiredo and Adam Podhorski and Stefan Schuster and Angel Rubio and Francisco J. Planes}, title = {Selection of human tissue-specific elementary flux modes using gene expression data}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {2009--2016}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt328}, doi = {10.1093/BIOINFORMATICS/BTT328}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RezolaPFPSRP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RijlaarsdamRGDL13, author = {Martin A. Rijlaarsdam and David J. Rijlaarsdam and Ad J. M. Gillis and Lambert C. J. Dorssers and Leendert H. J. Looijenga}, title = {miMsg: a target enrichment algorithm for predicted miR-mRNA interactions based on relative ranking of matched expression data}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1638--1646}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt246}, doi = {10.1093/BIOINFORMATICS/BTT246}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RijlaarsdamRGDL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RivasPNGMLKMD13, author = {Manuel A. Rivas and Matti Pirinen and Matthew J. Neville and Kyle J. Gaulton and Loukas Moutsianas and Cecilia M. Lindgren and Fredrik Karpe and Mark I. McCarthy and Peter Donnelly}, title = {Assessing association between protein truncating variants and quantitative traits}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2419--2426}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt409}, doi = {10.1093/BIOINFORMATICS/BTT409}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RivasPNGMLKMD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RizkLC13, author = {Guillaume Rizk and Dominique Lavenier and Rayan Chikhi}, title = {{DSK:} \emph{k}-mer counting with very low memory usage}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {652--653}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt020}, doi = {10.1093/BIOINFORMATICS/BTT020}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RizkLC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RobbinsGDTA13, author = {David E. Robbins and Alexander Gr{\"{u}}neberg and Helena F. Deus and Murat M. Tanik and Jonas S. Almeida}, title = {A self-updating road map of The Cancer Genome Atlas}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1333--1340}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt141}, doi = {10.1093/BIOINFORMATICS/BTT141}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RobbinsGDTA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RobertsKPSBSGA13, author = {Nicola D. Roberts and R. Daniel Kortschak and Wendy T. Parker and Andreas W. Schreiber and Susan Branford and Hamish S. Scott and Garique Glonek and David L. Adelson}, title = {A comparative analysis of algorithms for somatic {SNV} detection in cancer}, journal = {Bioinform.}, volume = {29}, number = {18}, pages = {2223--2230}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt375}, doi = {10.1093/BIOINFORMATICS/BTT375}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/RobertsKPSBSGA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RobertsSP13, author = {Adam Roberts and Lorian Schaeffer and Lior Pachter}, title = {Updating RNA-Seq analyses after re-annotation}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1631--1637}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt197}, doi = {10.1093/BIOINFORMATICS/BTT197}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/RobertsSP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RobertsonHWGBTFPPF13, author = {Charles E. Robertson and J. Kirk Harris and Brandie D. Wagner and David Granger and Kathy Browne and Beth Tatem and Leah M. Feazel and Kristin Park and Norman R. Pace and Daniel N. Frank}, title = {Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {3100--3101}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt526}, doi = {10.1093/BIOINFORMATICS/BTT526}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/RobertsonHWGBTFPPF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RodchenkovDSB13, author = {Igor V. Rodchenkov and Emek Demir and Chris Sander and Gary D. Bader}, title = {The BioPAX Validator}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2659--2660}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt452}, doi = {10.1093/BIOINFORMATICS/BTT452}, timestamp = {Mon, 26 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/RodchenkovDSB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Rodriguez-EstebanL13, author = {Raul Rodriguez{-}Esteban and William Loging}, title = {Quantifying the complexity of medical research}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2918--2924}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt505}, doi = {10.1093/BIOINFORMATICS/BTT505}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Rodriguez-EstebanL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RohrPYP13, author = {Cristian Oscar Rohr and R. Gonzalo Parra and Patricio Yankilevich and Carolina Perez{-}Castro}, title = {{INSECT:} IN-silico SEarch for Co-occurring Transcription factors}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2852--2858}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt506}, doi = {10.1093/BIOINFORMATICS/BTT506}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RohrPYP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Rost13, author = {Burkhard Rost}, title = {{ISCB:} past-present perspective for the International Society for Computational Biology}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3243--3245}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt629}, doi = {10.1093/BIOINFORMATICS/BTT629}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Rost13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RostkowskiSR13, author = {Michal Rostkowski and Ola Spjuth and Patrik Rydberg}, title = {WhichCyp: prediction of cytochromes {P450} inhibition}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {2051--2052}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt325}, doi = {10.1093/BIOINFORMATICS/BTT325}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RostkowskiSR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RottgerKSSAWB13, author = {Richard R{\"{o}}ttger and Prabhav Kalaghatgi and Peng Sun and Siomar de Castro Soares and Vasco Ariston de Carvalho Azevedo and Tobias Wittkop and Jan Baumbach}, title = {Density parameter estimation for finding clusters of homologous proteins - tracing actinobacterial pathogenicity lifestyles}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {215--222}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts653}, doi = {10.1093/BIOINFORMATICS/BTS653}, timestamp = {Wed, 24 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/RottgerKSSAWB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Rubio-CamarilloGFVP13, author = {Miriam Rubio{-}Camarillo and Gonzalo G{\'{o}}mez{-}L{\'{o}}pez and Jos{\'{e}} Mar{\'{\i}}a Fern{\'{a}}ndez and Alfonso Valencia and David G. Pisano}, title = {RUbioSeq: a suite of parallelized pipelines to automate exome variation and bisulfite-seq analyses}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1687--1689}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt203}, doi = {10.1093/BIOINFORMATICS/BTT203}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/Rubio-CamarilloGFVP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RuttenbergLLFS13, author = {Brian E. Ruttenberg and Gabriel Luna and Geoffrey P. Lewis and Steven K. Fisher and Ambuj K. Singh}, title = {Quantifying spatial relationships from whole retinal images}, journal = {Bioinform.}, volume = {29}, number = {7}, pages = {940--946}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt052}, doi = {10.1093/BIOINFORMATICS/BTT052}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RuttenbergLLFS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SakaiMRA13, author = {Ryo Sakai and Matthieu Moisse and Joke Reumers and Jan Aerts}, title = {Pipit: visualizing functional impacts of structural variations}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2206--2207}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt367}, doi = {10.1093/BIOINFORMATICS/BTT367}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SakaiMRA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SakaiSMA13, author = {Ryo Sakai and Alejandro Sifrim and Andrew Vande Moere and Jan Aerts}, title = {TrioVis: a visualization approach for filtering genomic variants of parent-child trios}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1801--1802}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt267}, doi = {10.1093/BIOINFORMATICS/BTT267}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SakaiSMA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SakuraiAKNIEMASS13, author = {Nozomu Sakurai and Takeshi Ara and Shigehiko Kanaya and Yukiko Nakamura and Yoko Iijima and Mitsuo Enomoto and Takeshi Motegi and Koh Aoki and Hideyuki Suzuki and Daisuke Shibata}, title = {An application of a relational database system for high-throughput prediction of elemental compositions from accurate mass values}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {290--291}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts660}, doi = {10.1093/BIOINFORMATICS/BTS660}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SakuraiAKNIEMASS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SalamaS13, author = {Rafik Amir Salama and Dov J. Stekel}, title = {A non-independent energy-based multiple sequence alignment improves prediction of transcription factor binding sites}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2699--2704}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt463}, doi = {10.1093/BIOINFORMATICS/BTT463}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SalamaS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Sanchez-PulidoP13, author = {Luis S{\'{a}}nchez{-}Pulido and Chris P. Ponting}, title = {Tiki, at the head of a new superfamily of enzymes}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2371--2374}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt412}, doi = {10.1093/BIOINFORMATICS/BTT412}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Sanchez-PulidoP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SatoHO13, author = {Keiko Sato and Toshihide Hara and Masanori Ohya}, title = {The code structure of the p53 DNA-binding domain and the prognosis of breast cancer patients}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2822--2825}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt497}, doi = {10.1093/BIOINFORMATICS/BTT497}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SatoHO13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SauthoffMJG13, author = {Georg Sauthoff and Mathias M{\"{o}}hl and Stefan Janssen and Robert Giegerich}, title = {Bellman's {GAP} - a language and compiler for dynamic programming in sequence analysis}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {551--560}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt022}, doi = {10.1093/BIOINFORMATICS/BTT022}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SauthoffMJG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SavojardoFC13, author = {Castrense Savojardo and Piero Fariselli and Rita Casadio}, title = {{BETAWARE:} a machine-learning tool to detect and predict transmembrane beta-barrel proteins in prokaryotes}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {504--505}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts728}, doi = {10.1093/BIOINFORMATICS/BTS728}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SavojardoFC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SavojardoFMC13, author = {Castrense Savojardo and Piero Fariselli and Pier Luigi Martelli and Rita Casadio}, title = {BCov: a method for predicting {\(\beta\)}-sheet topology using sparse inverse covariance estimation and integer programming}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3151--3157}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt555}, doi = {10.1093/BIOINFORMATICS/BTT555}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SavojardoFMC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SchaalHGS13, author = {Wesley Schaal and Ulf Hammerling and Mats G. Gustafsson and Ola Spjuth}, title = {Automated QuantMap for rapid quantitative molecular network topology analysis}, journal = {Bioinform.}, volume = {29}, number = {18}, pages = {2369--2370}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt390}, doi = {10.1093/BIOINFORMATICS/BTT390}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SchaalHGS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SchmidtEMAPH13, author = {Brian J. Schmidt and Ali Ebrahim and Thomas O. Metz and Joshua N. Adkins and Bernhard {\O}. Palsson and Daniel R. Hyduke}, title = {GIM\({}^{\mbox{3}}\)E: condition-specific models of cellular metabolism developed from metabolomics and expression data}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2900--2908}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt493}, doi = {10.1093/BIOINFORMATICS/BTT493}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SchmidtEMAPH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SchnattingerSK13, author = {Thomas Schnattinger and Uwe Sch{\"{o}}ning and Hans A. Kestler}, title = {Structural {RNA} alignment by multi-objective optimization}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1607--1613}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt188}, doi = {10.1093/BIOINFORMATICS/BTT188}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SchnattingerSK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SchnattingerSMK13, author = {Thomas Schnattinger and Uwe Sch{\"{o}}ning and Anita Marchfelder and Hans A. Kestler}, title = {RNA-Pareto: interactive analysis of Pareto-optimal {RNA} sequence-structure alignments}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {3102--3104}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt536}, doi = {10.1093/BIOINFORMATICS/BTT536}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SchnattingerSMK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SchneiderOHHK13, author = {Robert Schneider and Florian Odronitz and Bj{\"{o}}rn Hammesfahr and Marcel Hellkamp and Martin Kollmar}, title = {Peakr: simulating solid-state {NMR} spectra of proteins}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1134--1140}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt125}, doi = {10.1093/BIOINFORMATICS/BTT125}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/SchneiderOHHK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ScholtalbersRSGBCS13, author = {Jelle Scholtalbers and Jasmin R{\"{o}}{\ss}ler and Patrick Sorn and Jos de Graaf and Valesca Boisgu{\'{e}}rin and John C. Castle and Ugur Sahin}, title = {Galaxy {LIMS} for next-generation sequencing}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1233--1234}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt115}, doi = {10.1093/BIOINFORMATICS/BTT115}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ScholtalbersRSGBCS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SchopflinTMWRW13, author = {Robert Sch{\"{o}}pflin and Vladimir B. Teif and Oliver M{\"{u}}ller and Christin Weinberg and Karsten Rippe and Gero Wedemann}, title = {Modeling nucleosome position distributions from experimental nucleosome positioning maps}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2380--2386}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt404}, doi = {10.1093/BIOINFORMATICS/BTT404}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SchopflinTMWRW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SchroderGQCH13, author = {Markus S. Schr{\"{o}}der and Daniel Gusenleitner and John Quackenbush and Aed{\'{\i}}n C. Culhane and Benjamin Haibe{-}Kains}, title = {RamiGO: an R/Bioconductor package providing an AmiGO Visualize interface}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {666--668}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts708}, doi = {10.1093/BIOINFORMATICS/BTS708}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SchroderGQCH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SchroederSDMEPRB13, author = {Christopher M. Schroeder and Marc Sturm and Andreas Dufke and Ulrike Mau{-}Holzmann and Thomas Eggermann and Sven Poths and Olaf Riess and Michael Bonin}, title = {UPDtool: a tool for detection of iso- and heterodisomy in parent-child trios using {SNP} microarrays}, journal = {Bioinform.}, volume = {29}, number = {12}, pages = {1562--1564}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt174}, doi = {10.1093/BIOINFORMATICS/BTT174}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SchroederSDMEPRB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SchupbachPBBXC13, author = {Thierry Sch{\"{u}}pbach and Marco Pagni and Alan J. Bridge and Lydie Bougueleret and Ioannis Xenarios and Lorenzo Cerutti}, title = {pfsearchV3: a code acceleration and heuristic to search {PROSITE} profiles}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1215--1217}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt129}, doi = {10.1093/BIOINFORMATICS/BTT129}, timestamp = {Fri, 15 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SchupbachPBBXC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SedgewickBRSV13, author = {Andrew J. Sedgewick and Stephen C. Benz and Shahrooz Rabizadeh and Patrick Soon{-}Shiong and Charles J. Vaske}, title = {Learning subgroup-specific regulatory interactions and regulator independence with {PARADIGM}}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {62--70}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt229}, doi = {10.1093/BIOINFORMATICS/BTT229}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/SedgewickBRSV13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SedlazeckRH13, author = {Fritz J. Sedlazeck and Philipp Rescheneder and Arndt von Haeseler}, title = {NextGenMap: fast and accurate read mapping in highly polymorphic genomes}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2790--2791}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt468}, doi = {10.1093/BIOINFORMATICS/BTT468}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SedlazeckRH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Serang13, author = {Oliver Serang}, title = {Concerning the accuracy of Fido and parameter choice}, journal = {Bioinform.}, volume = {29}, number = {3}, pages = {412}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts687}, doi = {10.1093/BIOINFORMATICS/BTS687}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Serang13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SfrisoHEO13, author = {Pedro Sfriso and Adam Hospital and Agust{\'{\i}} Emperador and Modesto Orozco}, title = {Exploration of conformational transition pathways from coarse-grained simulations}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {1980--1986}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt324}, doi = {10.1093/BIOINFORMATICS/BTT324}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SfrisoHEO13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SharmanG13, author = {Joanna L. Sharman and Dietlind L. Gerloff}, title = {MaGnET: Malaria Genome Exploration Tool}, journal = {Bioinform.}, volume = {29}, number = {18}, pages = {2350--2352}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt384}, doi = {10.1093/BIOINFORMATICS/BTT384}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SharmanG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ShavitL13, author = {Yoli Shavit and Pietro Li{\`{o}}}, title = {CytoHiC: a cytoscape plugin for visual comparison of Hi-C networks}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1206--1207}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt120}, doi = {10.1093/BIOINFORMATICS/BTT120}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ShavitL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SheikhKRB13, author = {Saad I. Sheikh and Tamer Kahveci and Sanjay Ranka and J. Gordon Burleigh}, title = {Stability analysis of phylogenetic trees}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {166--174}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts657}, doi = {10.1093/BIOINFORMATICS/BTS657}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/SheikhKRB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SheppardLZ13, author = {Sarah Sheppard and Nathan D. Lawson and Lihua Julie Zhu}, title = {Accurate identification of polyadenylation sites from 3{\({'}\)} end deep sequencing using a na{\"{\i}}ve Bayes classifier}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2564--2571}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt446}, doi = {10.1093/BIOINFORMATICS/BTT446}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SheppardLZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SheppardRK13, author = {Patrick W. Sheppard and Muruhan Rathinam and Mustafa Khammash}, title = {SPSens: a software package for stochastic parameter sensitivity analysis of biochemical reaction networks}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {140--142}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts642}, doi = {10.1093/BIOINFORMATICS/BTS642}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SheppardRK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ShiM13, author = {Yuhao Shi and Jacek Majewski}, title = {FishingCNV: a graphical software package for detecting rare copy number variations in exome-sequencing data}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1461--1462}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt151}, doi = {10.1093/BIOINFORMATICS/BTT151}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ShiM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ShiMHWPT13, author = {Yuan Shi and Gregory Mellier and Sinong Huang and Jacob K. White and Shazib Pervaiz and Lisa Tucker{-}Kellogg}, title = {Computational modelling of {LY303511} and TRAIL-induced apoptosis suggests dynamic regulation of cFLIP}, journal = {Bioinform.}, volume = {29}, number = {3}, pages = {347--354}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts702}, doi = {10.1093/BIOINFORMATICS/BTS702}, timestamp = {Mon, 08 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ShiMHWPT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ShihabGCDG13, author = {Hashem A. Shihab and Julian Gough and David N. Cooper and Ian N. M. Day and Tom R. Gaunt}, title = {Predicting the functional consequences of cancer-associated amino acid substitutions}, journal = {Bioinform.}, volume = {29}, number = {12}, pages = {1504--1510}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt182}, doi = {10.1093/BIOINFORMATICS/BTT182}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ShihabGCDG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ShimoniPYGR13, author = {Raz Shimoni and Kim Pham and Mohammed Yassin and Min Gu and Sarah M. Russell}, title = {TACTICS, an interactive platform for customized high-content bioimaging analysis}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {817--818}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt035}, doi = {10.1093/BIOINFORMATICS/BTT035}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ShimoniPYGR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ShresthaF13, author = {Anish Man Singh Shrestha and Martin C. Frith}, title = {An approximate Bayesian approach for mapping paired-end {DNA} reads to a reference genome}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {965--972}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt073}, doi = {10.1093/BIOINFORMATICS/BTT073}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ShresthaF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ShugayMVN13, author = {Mikhail Shugay and I{\~{n}}igo Ortiz de Mend{\'{\i}}bil and Jos{\'{e}} L. Vizmanos and Francisco J. Novo}, title = {Oncofuse: a computational framework for the prediction of the oncogenic potential of gene fusions}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2539--2546}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt445}, doi = {10.1093/BIOINFORMATICS/BTT445}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ShugayMVN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SieversDWH13, author = {Fabian Sievers and David Dineen and Andreas Wilm and Desmond G. Higgins}, title = {Making automated multiple alignments of very large numbers of protein sequences}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {989--995}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt093}, doi = {10.1093/BIOINFORMATICS/BTT093}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SieversDWH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SilbersteinWOTASTGGSBDTG13, author = {Mark Silberstein and Omer Weissbrod and Lars Otten and Anna Tzemach and Andrei Anisenia and Oren Shtark and Dvir Tuberg and Eddie Galfrin and Irena Gannon and Adel Shalata and Zvi U. Borochowitz and Rina Dechter and Elizabeth Thompson and Dan Geiger}, title = {A system for exact and approximate genetic linkage analysis of {SNP} data in large pedigrees}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {197--205}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts658}, doi = {10.1093/BIOINFORMATICS/BTS658}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SilbersteinWOTASTGGSBDTG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SilbersteinWOTASTGGSBDTG13a, author = {Mark Silberstein and Omer Weissbrod and Lars Otten and Anna Tzemach and Andrei Anisenia and Oren Shtark and Dvir Tuberg and Eddie Galfrin and Irena Gannon and Adel Shalata and Zvi U. Borochowitz and Rina Dechter and Elizabeth Thompson and Dan Geiger}, title = {A system for exact and approximate genetic linkage analysis of {SNP} data in large pedigrees}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {669}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt046}, doi = {10.1093/BIOINFORMATICS/BTT046}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/SilbersteinWOTASTGGSBDTG13a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SilverBBY13, author = {David H. Silver and Shay Ben{-}Elazar and Alexei Bogoslavsky and Itai Yanai}, title = {{ELOPER:} elongation of paired-end reads as a pre-processing tool for improved \emph{de novo} genome assembly}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1455--1457}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt169}, doi = {10.1093/BIOINFORMATICS/BTT169}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SilverBBY13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SkwarkAE13, author = {Marcin J. Skwark and Abbi Abdel{-}Rehim and Arne Elofsson}, title = {PconsC: combination of direct information methods and alignments improves contact prediction}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1815--1816}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt259}, doi = {10.1093/BIOINFORMATICS/BTT259}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SkwarkAE13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SkwarkE13, author = {Marcin J. Skwark and Arne Elofsson}, title = {PconsD: ultra rapid, accurate model quality assessment for protein structure prediction}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1817--1818}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt272}, doi = {10.1093/BIOINFORMATICS/BTT272}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SkwarkE13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SlaterCSM13, author = {Alex W. Slater and Javier I. Castellanos and Manfred J. Sippl and Francisco Melo}, title = {Towards the development of standardized methods for comparison, ranking and evaluation of structure alignments}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {47--53}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts600}, doi = {10.1093/BIOINFORMATICS/BTS600}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SlaterCSM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SloggettGA13, author = {Clare Sloggett and Nuwan Goonasekera and Enis Afgan}, title = {BioBlend: automating pipeline analyses within Galaxy and CloudMan}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1685--1686}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt199}, doi = {10.1093/BIOINFORMATICS/BTT199}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/SloggettGA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SluskyD13, author = {Joanna S. G. Slusky and Roland L. Dunbrack Jr.}, title = {Charge asymmetry in the proteins of the outer membrane}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2122--2128}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt355}, doi = {10.1093/BIOINFORMATICS/BTT355}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SluskyD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SmithAVP13, author = {Robert Smith and Tamil S. Anthonymuthu and Dan Ventura and John T. Prince}, title = {Statistical agglomeration: peak summarization for direct infusion lipidomics}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2445--2451}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt376}, doi = {10.1093/BIOINFORMATICS/BTT376}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SmithAVP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SmithVP13, author = {Robert Smith and Dan Ventura and John T. Prince}, title = {Novel algorithms and the benefits of comparative validation}, journal = {Bioinform.}, volume = {29}, number = {12}, pages = {1583--1585}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt176}, doi = {10.1093/BIOINFORMATICS/BTT176}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SmithVP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SnajderTH13, author = {Ren{\'{e}} Snajder and Zlatko Trajanoski and Hubert Hackl}, title = {GPViz: dynamic visualization of genomic regions and variants affecting protein domains}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2195--2196}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt354}, doi = {10.1093/BIOINFORMATICS/BTT354}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SnajderTH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SoferSHHB13, author = {Tamar Sofer and Elizabeth D. Schifano and Jane A. Hoppin and Lifang Hou and Andrea A. Baccarelli}, title = {A-clustering: a novel method for the detection of co-regulated methylation regions, and regions associated with exposure}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2884--2891}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt498}, doi = {10.1093/BIOINFORMATICS/BTT498}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SoferSHHB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SommerH0HG13, author = {Christoph Sommer and Michael Held and Bernd Fischer and Wolfgang Huber and Daniel Gerlich}, title = {CellH5: a format for data exchange in high-content screening}, journal = {Bioinform.}, volume = {29}, number = {12}, pages = {1580--1582}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt175}, doi = {10.1093/BIOINFORMATICS/BTT175}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SommerH0HG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SorokinaSAD13, author = {Oksana Sorokina and Anatoly A. Sorokin and J. Douglas Armstrong and Vincent Danos}, title = {A simulator for spatially extended kappa models}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {3105--3106}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt523}, doi = {10.1093/BIOINFORMATICS/BTT523}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SorokinaSAD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SpitzZH13, author = {Andreas Spitz and Katharina Anna Zweig and Emoke{-}{\'{A}}gnes Horv{\'{a}}t}, title = {\emph{SICOP}: identifying significant co-interaction patterns}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2503--2504}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt408}, doi = {10.1093/BIOINFORMATICS/BTT408}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SpitzZH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SpjuthGCABWWE13, author = {Ola Spjuth and Valentin Georgiev and Lars Carlsson and Jonathan Alvarsson and Arvid Berg and Egon L. Willighagen and Jarl E. S. Wikberg and Martin Eklund}, title = {Bioclipse-R: integrating management and visualization of life science data with statistical analysis}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {286--289}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts681}, doi = {10.1093/BIOINFORMATICS/BTS681}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SpjuthGCABWWE13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SrihariR13, author = {Sriganesh Srihari and Mark A. Ragan}, title = {Systematic tracking of dysregulated modules identifies novel genes in cancer}, journal = {Bioinform.}, volume = {29}, number = {12}, pages = {1553--1561}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt191}, doi = {10.1093/BIOINFORMATICS/BTT191}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SrihariR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/StockelMKGBRKKL13, author = {Daniel St{\"{o}}ckel and Oliver M{\"{u}}ller and Tim Kehl and Andreas Gerasch and Christina Backes and Alexander Rurainski and Andreas Keller and Michael Kaufmann and Hans{-}Peter Lenhof}, title = {NetworkTrail - a web service for identifying and visualizing deregulated subnetworks}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1702--1703}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt204}, doi = {10.1093/BIOINFORMATICS/BTT204}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/StockelMKGBRKKL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SugdenTSTL13, author = {Lauren A. Sugden and Michael R. Tackett and Yiannis A. Savva and William A. Thompson and Charles E. Lawrence}, title = {Assessing the validity and reproducibility of genome-scale predictions}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2844--2851}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt508}, doi = {10.1093/BIOINFORMATICS/BTT508}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SugdenTSTL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SunQLWLWLYTRBZLL13, author = {Hanfei Sun and Bo Qin and Tao Liu and Qixuan Wang and Jing Liu and Juan Wang and Xueqiu Lin and Yulin Yang and Len Taing and Prakash K. Rao and Myles Brown and Yong Zhang and Henry Long and Xiaole Shirley Liu}, title = {CistromeFinder for ChIP-seq and DNase-seq data reuse}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1352--1354}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt135}, doi = {10.1093/BIOINFORMATICS/BTT135}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SunQLWLWLYTRBZLL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SutterlinKDJG13, author = {Thomas S{\"{u}}tterlin and Christoph Kolb and Hartmut Dickhaus and Dirk J{\"{a}}ger and Niels Grabe}, title = {Bridging the scales: semantic integration of quantitative {SBML} in graphical multi-cellular models and simulations with {EPISIM} and {COPASI}}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {223--229}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts659}, doi = {10.1093/BIOINFORMATICS/BTS659}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/SutterlinKDJG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Suyama13, author = {Mikita Suyama}, title = {Mechanistic insights into mutually exclusive splicing in \emph{dynamin 1}}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2084--2087}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt368}, doi = {10.1093/BIOINFORMATICS/BTT368}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Suyama13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TaboureauJKERGA13, author = {Olivier Taboureau and Ulrik Plesner Jacobsen and Christian Kalhauge and Daniel Edsg{\"{a}}rd and Olga Rigina and Ramneek Gupta and Karine Audouze}, title = {HExpoChem: a systems biology resource to explore human exposure to chemicals}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1231--1232}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt112}, doi = {10.1093/BIOINFORMATICS/BTT112}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/TaboureauJKERGA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TaeMSBG13, author = {Hongseok Tae and Kevin W. McMahon and Robert E. Settlage and Jasmin H. Bavarva and Harold R. Garner}, title = {ReviSTER: an automated pipeline to revise misaligned reads to simple tandem repeats}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1734--1741}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt277}, doi = {10.1093/BIOINFORMATICS/BTT277}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/TaeMSBG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TaghaviMDC13, author = {Zeinab Taghavi and Narjes S. Movahedi and Sorin Draghici and Hamidreza Chitsaz}, title = {Distilled single-cell genome sequencing and \emph{de novo} assembly for sparse microbial communities}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2395--2401}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt420}, doi = {10.1093/BIOINFORMATICS/BTT420}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/TaghaviMDC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TakedaCG13, author = {Takako Takeda and Rosario I. Corona and Jun{-}tao Guo}, title = {A knowledge-based orientation potential for transcription factor-DNA docking}, journal = {Bioinform.}, volume = {29}, number = {3}, pages = {322--330}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts699}, doi = {10.1093/BIOINFORMATICS/BTS699}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/TakedaCG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TakizawaNTCMHF13, author = {Hiromu Takizawa and Kazushige Nakamura and Akito Tabira and Yoichi Chikahara and Tatsuhiro Matsui and Noriko Hiroi and Akira Funahashi}, title = {LibSBMLSim: a reference implementation of fully functional {SBML} simulator}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1474--1476}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt157}, doi = {10.1093/BIOINFORMATICS/BTT157}, timestamp = {Sun, 06 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/TakizawaNTCMHF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TamboreroGL13, author = {David Tamborero and Abel Gonzalez{-}Perez and N{\'{u}}ria L{\'{o}}pez{-}Bigas}, title = {OncodriveCLUST: exploiting the positional clustering of somatic mutations to identify cancer genes}, journal = {Bioinform.}, volume = {29}, number = {18}, pages = {2238--2244}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt395}, doi = {10.1093/BIOINFORMATICS/BTT395}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/TamboreroGL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TanCDCM13, author = {Christopher M. Tan and Edward Y. Chen and Ruth Dannenfelser and Neil R. Clark and Avi Ma'ayan}, title = {Network2Canvas: network visualization on a canvas with enrichment analysis}, journal = {Bioinform.}, volume = {29}, number = {15}, pages = {1872--1878}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt319}, doi = {10.1093/BIOINFORMATICS/BTT319}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/TanCDCM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TangAB13, author = {Shiyuyun Tang and Ivan Antonov and Mark Borodovsky}, title = {MetaGeneTack: ab initio detection of frameshifts in metagenomic sequences}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {114--116}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts636}, doi = {10.1093/BIOINFORMATICS/BTS636}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/TangAB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TangL13, author = {Zheng{-}Zheng Tang and Dan{-}Yu Lin}, title = {{MASS:} meta-analysis of score statistics for sequencing studies}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1803--1805}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt280}, doi = {10.1093/BIOINFORMATICS/BTT280}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/TangL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TarcaLUBBDHKMMNNPRRSTXZC13, author = {Adi L. Tarca and Mario Lauria and Michael Unger and Erhan Bilal and St{\'{e}}phanie Bou{\'{e}} and Kushal Kumar Dey and Julia Hoeng and Heinz Koeppl and Florian Martin and Pablo Meyer and Preetam Nandy and Raquel Norel and Manuel C. Peitsch and John Jeremy Rice and Roberto Romero and Gustavo Stolovitzky and Marja Talikka and Yang Xiang and Christoph Zechner and Improver Dsc Collaborators}, title = {Strengths and limitations of microarray-based phenotype prediction: lessons learned from the {IMPROVER} Diagnostic Signature Challenge}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2892--2899}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt492}, doi = {10.1093/BIOINFORMATICS/BTT492}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/TarcaLUBBDHKMMNNPRRSTXZC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TaylorDTP13, author = {Ryan M. Taylor and Jamison Dance and Russ J. Taylor and John T. Prince}, title = {Metriculator: quality assessment for mass spectrometry-based proteomics}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2948--2949}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt510}, doi = {10.1093/BIOINFORMATICS/BTT510}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/TaylorDTP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TekirCASKKSUKOSU13, author = {Saliha Durmus Tekir and Tunahan {\c{C}}akir and Emre Ardi{\c{c}} and Ali Semih Sayilirbas and G{\"{o}}khan Konuk and Mithat Konuk and Hasret Sariyer and Azat Ugurlu and Ilknur Karadeniz and Arzucan {\"{O}}zg{\"{u}}r and Fatih Erdogan Sevilgen and Kutlu {\"{O}}. {\"{U}}lgen}, title = {{PHISTO:} pathogen-host interaction search tool}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1357--1358}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt137}, doi = {10.1093/BIOINFORMATICS/BTT137}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/TekirCASKKSUKOSU13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TengGLDWX13, author = {Zhixia Teng and Maozu Guo and Xiaoyan Liu and Qiguo Dai and Chun{-}yu Wang and Ping Xuan}, title = {Measuring gene functional similarity based on group-wise comparison of {GO} terms}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1424--1432}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt160}, doi = {10.1093/BIOINFORMATICS/BTT160}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/TengGLDWX13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TepperS13, author = {Naama Tepper and Tomer Shlomi}, title = {An integrated computational approach for metabolic flux analysis coupled with inference of tandem-MS collisional fragments}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {3045--3052}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt516}, doi = {10.1093/BIOINFORMATICS/BTT516}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/TepperS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TeschendorffMLBTGB13, author = {Andrew E. Teschendorff and Francesco Marabita and Matthias Lechner and Thomas E. Bartlett and Jesper Tegn{\'{e}}r and David Gomez{-}Cabrero and Stephan Beck}, title = {A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k {DNA} methylation data}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {189--196}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts680}, doi = {10.1093/BIOINFORMATICS/BTS680}, timestamp = {Thu, 10 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/TeschendorffMLBTGB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ThiemeG13, author = {Sebastian Thieme and Philip Groth}, title = {Genome Fusion Detection: a novel method to detect fusion genes from SNP-array data}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {671--677}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt028}, doi = {10.1093/BIOINFORMATICS/BTT028}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ThiemeG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ThomasHNSC13, author = {Niclas Thomas and James M. Heather and Wilfred Ndifon and John Shawe{-}Taylor and Benjamin Chain}, title = {Decombinator: a tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {542--550}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt004}, doi = {10.1093/BIOINFORMATICS/BTT004}, timestamp = {Wed, 19 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ThomasHNSC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TolosiTHHBL13, author = {Laura Tolosi and Jessica Thei{\ss}en and Konstantin Halachev and Barbara Hero and Frank Berthold and Thomas Lengauer}, title = {A method for finding consensus breakpoints in the cancer genome from copy number data}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1793--1800}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt300}, doi = {10.1093/BIOINFORMATICS/BTT300}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/TolosiTHHBL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TongCSC13, author = {Pan Tong and Yong Chen and Xiao Su and Kevin R. Coombes}, title = {{SIBER:} systematic identification of bimodally expressed genes using RNAseq data}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {605--613}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts713}, doi = {10.1093/BIOINFORMATICS/BTS713}, timestamp = {Thu, 10 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/TongCSC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TorchalaMCFB13, author = {Mieczyslaw Torchala and Iain H. Moal and Raphael A. G. Chaleil and Juan Fern{\'{a}}ndez{-}Recio and Paul A. Bates}, title = {SwarmDock: a server for flexible protein-protein docking}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {807--809}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt038}, doi = {10.1093/BIOINFORMATICS/BTT038}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/TorchalaMCFB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TraoreAAGKSB13, author = {Seydou Traor{\'{e}} and David Allouche and Isabelle Andr{\'{e}} and Simon de Givry and George Katsirelos and Thomas Schiex and Sophie Barbe}, title = {A new framework for computational protein design through cost function network optimization}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2129--2136}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt374}, doi = {10.1093/BIOINFORMATICS/BTT374}, timestamp = {Thu, 23 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/TraoreAAGKSB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TrevisanASCM13, author = {J{\'{u}}lio Trevisan and Plamen P. Angelov and Andrew D. Scott and Paul L. Carmichael and Francis L. Martin}, title = {IRootLab: a free and open-source {MATLAB} toolbox for vibrational biospectroscopy data analysis}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {1095--1097}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt084}, doi = {10.1093/BIOINFORMATICS/BTT084}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/TrevisanASCM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TriskaGSMT13, author = {Martin Triska and David Grocutt and James Southern and Denis J. Murphy and Tatiana V. Tatarinova}, title = {\emph{cisExpress}: motif detection in {DNA} sequences}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2203--2205}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt366}, doi = {10.1093/BIOINFORMATICS/BTT366}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/TriskaGSMT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TrostAGNK13, author = {Brett Trost and Ryan Arsenault and Philip J. Griebel and Scott Napper and Anthony J. Kusalik}, title = {{DAPPLE:} a pipeline for the homology-based prediction of phosphorylation sites}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1693--1695}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt265}, doi = {10.1093/BIOINFORMATICS/BTT265}, timestamp = {Wed, 23 Feb 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/TrostAGNK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TrostK13, author = {Brett Trost and Anthony J. Kusalik}, title = {Computational phosphorylation site prediction in plants using random forests and organism-specific instance weights}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {686--694}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt031}, doi = {10.1093/BIOINFORMATICS/BTT031}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/TrostK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TsaiTPPMWR13, author = {Tsung{-}Heng Tsai and Mahlet G. Tadesse and Cristina Di Poto and Lewis K. Pannell and Yehia Mechref and Yue Joseph Wang and Habtom W. Ressom}, title = {Multi-profile Bayesian alignment model for {LC-MS} data analysis with integration of internal standards}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2774--2780}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt461}, doi = {10.1093/BIOINFORMATICS/BTT461}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/TsaiTPPMWR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TudoseHMOTDKES13, author = {Ilinca Tudose and Janna Hastings and Venkatesh Muthukrishnan and Gareth I. Owen and Steve Turner and Adriano Dekker and Namrata Kale and Marcus Ennis and Christoph Steinbeck}, title = {OntoQuery: easy-to-use web-based {OWL} querying}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2955--2957}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt514}, doi = {10.1093/BIOINFORMATICS/BTT514}, timestamp = {Mon, 28 Mar 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/TudoseHMOTDKES13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/VaasSHFBKG13, author = {Lea A. I. Vaas and Johannes Sikorski and Benjamin Hofner and Anne Fiebig and Nora Buddruhs and Hans{-}Peter Klenk and Markus G{\"{o}}ker}, title = {opm: an {R} package for analysing OmniLog\({}^{\mbox{{\textregistered}}}\) phenotype microarray data}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1823--1824}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt291}, doi = {10.1093/BIOINFORMATICS/BTT291}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/VaasSHFBKG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/VealXRFHMBHT13, author = {Colin D. Veal and Hang Xu and Katherine Reekie and Robert C. Free and Robert J. Hardwick and David McVey and Anthony J. Brookes and Edward J. Hollox and Christopher J. Talbot}, title = {Automated design of paralogue ratio test assays for the accurate and rapid typing of copy number variation}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {1997--2003}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt330}, doi = {10.1093/BIOINFORMATICS/BTT330}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/VealXRFHMBHT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Vera-LiconaBBZ13, author = {Paola Vera{-}Licona and Eric Bonnet and Emmanuel Barillot and Andrei Yu. Zinovyev}, title = {{OCSANA:} optimal combinations of interventions from network analysis}, journal = {Bioinform.}, volume = {29}, number = {12}, pages = {1571--1573}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt195}, doi = {10.1093/BIOINFORMATICS/BTT195}, timestamp = {Tue, 10 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Vera-LiconaBBZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/VerbekeCDFM13, author = {Lieven P. C. Verbeke and Lore Cloots and Piet Demeester and Jan Fostier and Kathleen Marchal}, title = {{EPSILON:} an eQTL prioritization framework using similarity measures derived from local networks}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1308--1316}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt142}, doi = {10.1093/BIOINFORMATICS/BTT142}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/VerbekeCDFM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/VincentGW13, author = {Thomas L. Vincent and Peter J. Green and Derek N. Woolfson}, title = {{LOGICOIL} - multi-state prediction of coiled-coil oligomeric state}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {69--76}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts648}, doi = {10.1093/BIOINFORMATICS/BTS648}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/VincentGW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/VlachakisTMK13, author = {Dimitrios Vlachakis and Dimosthenis Tsagkrasoulis and Vasileios Megalooikonomou and Sophia Kossida}, title = {Introducing Drugster: a comprehensive and fully integrated drug design, lead and structure optimization toolkit}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {126--128}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts637}, doi = {10.1093/BIOINFORMATICS/BTS637}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/VlachakisTMK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/VlaicHKWD13, author = {Sebastian Vlaic and Bianca Hoffmann and Peter Kupfer and Michael Weber and Andreas Dr{\"{a}}ger}, title = {{GRN2SBML:} automated encoding and annotation of inferred gene regulatory networks complying with {SBML}}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2216--2217}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt370}, doi = {10.1093/BIOINFORMATICS/BTT370}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/VlaicHKWD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/VoegeleBRMDA13, author = {Catherine Voegele and Baptiste Bouchereau and Nivonirina Robinot and James McKay and Philippe Damiecki and Lucile Alteyrac}, title = {A universal open-source Electronic Laboratory Notebook}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1710--1712}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt253}, doi = {10.1093/BIOINFORMATICS/BTT253}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/VoegeleBRMDA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/VotapkaA13, author = {Lane Votapka and Rommie E. Amaro}, title = {Multistructural hot spot characterization with FTProd}, journal = {Bioinform.}, volume = {29}, number = {3}, pages = {393--394}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts689}, doi = {10.1093/BIOINFORMATICS/BTS689}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/VotapkaA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/VyvermanBFD13, author = {Micha{\"{e}}l Vyverman and Bernard De Baets and Veerle Fack and Peter Dawyndt}, title = {essaMEM: finding maximal exact matches using enhanced sparse suffix arrays}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {802--804}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt042}, doi = {10.1093/BIOINFORMATICS/BTT042}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/VyvermanBFD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WaltemathHHSW13, author = {Dagmar Waltemath and Ron Henkel and Robert H{\"{a}}lke and Martin Scharm and Olaf Wolkenhauer}, title = {Improving the reuse of computational models through version control}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {742--748}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt018}, doi = {10.1093/BIOINFORMATICS/BTT018}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WaltemathHHSW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangALP13, author = {Yingfeng Wang and Tae{-}Hyuk Ahn and Zhou Li and Chongle Pan}, title = {Sipros/ProRata: a versatile informatics system for quantitative community proteomics}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {2064--2065}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt329}, doi = {10.1093/BIOINFORMATICS/BTT329}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangALP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangBHG13, author = {Yan Wang and Tyler W. H. Backman and Kevin Horan and Thomas Girke}, title = {fmcsR: mismatch tolerant maximum common substructure searching in {R}}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2792--2794}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt475}, doi = {10.1093/BIOINFORMATICS/BTT475}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangBHG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangBMBMD13, author = {Wenting Wang and Veerabhadran Baladandayuthapani and Jeffrey S. Morris and Bradley M. Broom and Ganiraju Manyam and Kim{-}Anh Do}, title = {iBAG: integrative Bayesian analysis of high-dimensional multiplatform genomics data}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {149--159}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts655}, doi = {10.1093/BIOINFORMATICS/BTS655}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangBMBMD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangC13, author = {Ching{-}Wei Wang and Hsiang{-}Chou Chen}, title = {Improved image alignment method in application to X-ray images and biological images}, journal = {Bioinform.}, volume = {29}, number = {15}, pages = {1879--1887}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt309}, doi = {10.1093/BIOINFORMATICS/BTT309}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangCDW13, author = {Yong{-}Cui Wang and Shi{-}Long Chen and Nai{-}Yang Deng and Yong Wang}, title = {Network predicting drug's anatomical therapeutic chemical code}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1317--1324}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt158}, doi = {10.1093/BIOINFORMATICS/BTT158}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangCDW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangGLLWXC13, author = {Juan Wang and Maozu Guo and Xiaoyan Liu and Yang Liu and Chun{-}yu Wang and Linlin Xing and Kai Che}, title = {Lnetwork: an efficient and effective method for constructing phylogenetic networks}, journal = {Bioinform.}, volume = {29}, number = {18}, pages = {2269--2276}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt378}, doi = {10.1093/BIOINFORMATICS/BTT378}, timestamp = {Thu, 28 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangGLLWXC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangL13, author = {Jijie Wang and Henry Lam}, title = {Graph-based peak alignment algorithms for multiple liquid chromatography-mass spectrometry datasets}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2469--2476}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt435}, doi = {10.1093/BIOINFORMATICS/BTT435}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangLJ13, author = {Jianrong Wang and Victoria V. Lunyak and I King Jordan}, title = {BroadPeak: a novel algorithm for identifying broad peaks in diffuse ChIP-seq datasets}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {492--493}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts722}, doi = {10.1093/BIOINFORMATICS/BTS722}, timestamp = {Sun, 14 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangLJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangLP13, author = {Yupeng Wang and Jingping Li and Andrew H. Paterson}, title = {\emph{MCScanX-transposed}: detecting transposed gene duplications based on multiple colinearity scans}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1458--1460}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt150}, doi = {10.1093/BIOINFORMATICS/BTT150}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangLP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangLSTZJLWEMRW13, author = {Tao Wang and Jie Liu and Li Shen and Julian Tonti{-}Filippini and Yun Zhu and Haiyang Jia and Ryan Lister and John W. Whitaker and Joseph R. Ecker and A. Harvey Millar and Bing Ren and Wei Wang}, title = {{STAR:} an integrated solution to management and visualization of sequencing data}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3204--3210}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt558}, doi = {10.1093/BIOINFORMATICS/BTT558}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangLSTZJLWEMRW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangWAS13, author = {Liming Wang and Xiaodong Wang and Adam P. Arkin and Michael S. Samoilov}, title = {Inference of gene regulatory networks from genome-wide knockout fitness data}, journal = {Bioinform.}, volume = {29}, number = {3}, pages = {338--346}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts634}, doi = {10.1093/BIOINFORMATICS/BTS634}, timestamp = {Fri, 24 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangWAS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangX13, author = {Zhiyong Wang and Jinbo Xu}, title = {Predicting protein contact map using evolutionary and physical constraints by integer programming}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {266--273}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt211}, doi = {10.1093/BIOINFORMATICS/BTT211}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangX13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangXLL13, author = {Zixing Wang and Wenlong Xu and F. Anthony San Lucas and Yin Liu}, title = {Incorporating prior knowledge into Gene Network Study}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2633--2640}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt443}, doi = {10.1093/BIOINFORMATICS/BTT443}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangXLL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangYPHL13, author = {Wenhui Wang and Xiaolin Yin and Yoon Soo Pyon and Matthew Hayes and Jing Li}, title = {Rare variant discovery and calling by sequencing pooled samples with overlaps}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {29--38}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts645}, doi = {10.1093/BIOINFORMATICS/BTS645}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangYPHL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangZ13, author = {Yuhao Wang and Jianyang Zeng}, title = {Predicting drug-target interactions using restricted Boltzmann machines}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {126--134}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt234}, doi = {10.1093/BIOINFORMATICS/BTT234}, timestamp = {Wed, 02 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangZ13a, author = {Xiaojing Wang and Bing Zhang}, title = {\emph{customProDB}: an {R} package to generate customized protein databases from RNA-Seq data for proteomics search}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3235--3237}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt543}, doi = {10.1093/BIOINFORMATICS/BTT543}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangZ13a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WatsonSK13, author = {Mick Watson and Esther Schnettler and Alain Kohl}, title = {viRome: an {R} package for the visualization and analysis of viral small {RNA} sequence datasets}, journal = {Bioinform.}, volume = {29}, number = {15}, pages = {1902--1903}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt297}, doi = {10.1093/BIOINFORMATICS/BTT297}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WatsonSK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Weber13, author = {Gerald Weber}, title = {TfReg: calculating {DNA} and {RNA} melting temperatures and opening profiles with mesoscopic models}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1345--1347}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt133}, doi = {10.1093/BIOINFORMATICS/BTT133}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/Weber13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WeiHKL13, author = {Chih{-}Hsuan Wei and Bethany R. Harris and Hung{-}Yu Kao and Zhiyong Lu}, title = {tmVar: a text mining approach for extracting sequence variants in biomedical literature}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1433--1439}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt156}, doi = {10.1093/BIOINFORMATICS/BTT156}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WeiHKL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WeiSKKSAWMZ13, author = {Xiaoli Wei and Xue Shi and Imhoi Koo and Seongho Kim and Robin H. Schmidt and Gavin E. Arteel and Walter H. Watson and Craig McClain and Xiang Zhang}, title = {MetPP: a computational platform for comprehensive two-dimensional gas chromatography time-of-flight mass spectrometry-based metabolomics}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1786--1792}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt275}, doi = {10.1093/BIOINFORMATICS/BTT275}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/WeiSKKSAWMZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WeinbrandAB13, author = {Lina Weinbrand and Assaf Avihoo and Danny Barash}, title = {RNAfbinv: an interactive Java application for fragment-based design of {RNA} sequences}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2938--2940}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt494}, doi = {10.1093/BIOINFORMATICS/BTT494}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WeinbrandAB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WeismanYB13, author = {David Weisman and Michie Yasuda and Jennifer L. Bowen}, title = {FunFrame: functional gene ecological analysis pipeline}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1212--1214}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt123}, doi = {10.1093/BIOINFORMATICS/BTT123}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WeismanYB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WeitzelNDNSW13, author = {Michael Weitzel and Katharina N{\"{o}}h and Tolga Dalman and Sebastian Niedenf{\"{u}}hr and Birgit Stute and Wolfgang Wiechert}, title = {13CFLUX2 - high-performance software suite for \({}^{\mbox{13}}\)C-metabolic flux analysis}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {143--145}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts646}, doi = {10.1093/BIOINFORMATICS/BTS646}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WeitzelNDNSW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WheelerE13, author = {Travis J. Wheeler and Sean R. Eddy}, title = {nhmmer: {DNA} homology search with profile HMMs}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2487--2489}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt403}, doi = {10.1093/BIOINFORMATICS/BTT403}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/WheelerE13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WiedemannBG13, author = {Christoph Wiedemann and Peter Bellstedt and Matthias G{\"{o}}rlach}, title = {{CAPITO} - a web server-based analysis and plotting tool for circular dichroism data}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1750--1757}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt278}, doi = {10.1093/BIOINFORMATICS/BTT278}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WiedemannBG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WiegelsBT13, author = {Tim Wiegels and Stefan Bienert and Andrew E. Torda}, title = {Fast alignment and comparison of {RNA} structures}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {588--596}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt006}, doi = {10.1093/BIOINFORMATICS/BTT006}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WiegelsBT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WilkinsVMEALL13, author = {Angela D. Wilkins and Eric Venner and David C. Marciano and Serkan Erdin and Benu Atri and Rhonald C. Lua and Olivier Lichtarge}, title = {Accounting for epistatic interactions improves the functional analysis of protein structures}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2714--2721}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt489}, doi = {10.1093/BIOINFORMATICS/BTT489}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/WilkinsVMEALL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WooZSRG13, author = {Sangsoon Woo and Xuekui Zhang and Renan Sauteraud and Fran{\c{c}}ois Robert and Raphael Gottardo}, title = {{PING} 2.0: an R/Bioconductor package for nucleosome positioning using next-generation sequencing data}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {2049--2050}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt348}, doi = {10.1093/BIOINFORMATICS/BTT348}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WooZSRG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WoodbridgeTB13, author = {Mark Woodbridge and Christopher D. Tomlinson and Sarah A. Butcher}, title = {{ADAM:} automated data management for research datasets}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {146--147}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts644}, doi = {10.1093/BIOINFORMATICS/BTS644}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/WoodbridgeTB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WoodcockVKKFR13, author = {Dan J. Woodcock and Keith W. Vance and Michal Komorowski and Georgy Koentges and B{\"{a}}rbel Finkenst{\"{a}}dt and David A. Rand}, title = {A hierarchical model of transcriptional dynamics allows robust estimation of transcription rates in populations of single cells with variable gene copy number}, journal = {Bioinform.}, volume = {29}, number = {12}, pages = {1519--1525}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt201}, doi = {10.1093/BIOINFORMATICS/BTT201}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/WoodcockVKKFR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WrzodekEBZ13, author = {Clemens Wrzodek and Johannes Eichner and Finja B{\"{u}}chel and Andreas Zell}, title = {InCroMAP: integrated analysis of cross-platform microarray and pathway data}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {506--508}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts709}, doi = {10.1093/BIOINFORMATICS/BTS709}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WrzodekEBZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WuKLYM13, author = {Chia{-}Chin Wu and Kalpana Kannan and Steven Lin and Laising Yen and Aleksandar Milosavljevic}, title = {Identification of cancer fusion drivers using network fusion centrality}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1174--1181}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt131}, doi = {10.1093/BIOINFORMATICS/BTT131}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WuKLYM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WuLHC13, author = {Ming Wu and Li Liu and Hussein Hijazi and Christina Chan}, title = {A multi-layer inference approach to reconstruct condition-specific genes and their regulation}, journal = {Bioinform.}, volume = {29}, number = {12}, pages = {1541--1552}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt186}, doi = {10.1093/BIOINFORMATICS/BTT186}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WuLHC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WuYMZIZDJ13, author = {George Wu and Jason T. Yustein and Matthew N. McCall and Michael J. Zilliox and Rafael A. Irizarry and Karen Zeller and Chi V. Dang and Hongkai Ji}, title = {ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1182--1189}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt108}, doi = {10.1093/BIOINFORMATICS/BTT108}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WuYMZIZDJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WuZHHCWLPY13, author = {Jikun Wu and Wenqian Zhang and Songbo Huang and Zengquan He and Yanbing Cheng and Jun Wang and Tak Wah Lam and Zhiyu Peng and Siu{-}Ming Yiu}, title = {SOAPfusion: a robust and effective computational fusion discovery tool for RNA-seq reads}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {2971--2978}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt522}, doi = {10.1093/BIOINFORMATICS/BTT522}, timestamp = {Tue, 20 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WuZHHCWLPY13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/X13, title = {{ISCB/SPRINGER} series in computational biology}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3246--3247}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt630}, doi = {10.1093/BIOINFORMATICS/BTT630}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/X13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/XiaACFS13, author = {Li C. Xia and Dongmei Ai and Jacob A. Cram and Jed A. Fuhrman and Fengzhu Sun}, title = {Efficient statistical significance approximation for local similarity analysis of high-throughput time series data}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {230--237}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts668}, doi = {10.1093/BIOINFORMATICS/BTS668}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/XiaACFS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/XiaLMPH13, author = {Jianguo Xia and Ngan H. Lyle and Matthew L. Mayer and Olga M. Pena and Robert E. W. Hancock}, title = {{INVEX} - a web-based tool for integrative visualization of expression data}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3232--3234}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt562}, doi = {10.1093/BIOINFORMATICS/BTT562}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/XiaLMPH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/XiaoP13, author = {Hang Xiao and Hanchuan Peng}, title = {{APP2:} automatic tracing of 3D neuron morphology based on hierarchical pruning of a gray-weighted image distance-tree}, journal = {Bioinform.}, volume = {29}, number = {11}, pages = {1448--1454}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt170}, doi = {10.1093/BIOINFORMATICS/BTT170}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/XiaoP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/XieDHW13, author = {Boya Xie and Qin Ding and Hongjin Han and Di Wu}, title = {miRCancer: a microRNA-cancer association database constructed by text mining on literature}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {638--644}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt014}, doi = {10.1093/BIOINFORMATICS/BTT014}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/XieDHW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/XieJBSG13, author = {Bo Xie and Boris R. Jankovic and Vladimir B. Bajic and Le Song and Xin Gao}, title = {Poly(A) motif prediction using spectral latent features from human {DNA} sequences}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {316--325}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt218}, doi = {10.1093/BIOINFORMATICS/BTT218}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/XieJBSG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/XuA13, author = {Min Xu and Frank Alber}, title = {Automated target segmentation and real space fast alignment methods for high-throughput classification and averaging of crowded cryo-electron subtomograms}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {274--282}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt225}, doi = {10.1093/BIOINFORMATICS/BTT225}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/XuA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/XuLW13, author = {Rong Xu and Li Li and QuanQiu Wang}, title = {Towards building a disease-phenotype knowledge base: extracting disease-manifestation relationship from literature}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2186--2194}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt359}, doi = {10.1093/BIOINFORMATICS/BTT359}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/XuLW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/XuSL13, author = {Songhua Xu and Jianqiang Sheng and Xiaonan Luo}, title = {A new algorithm for context-based biomedical diagram similarity estimation}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {780--789}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt030}, doi = {10.1093/BIOINFORMATICS/BTT030}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/XuSL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/XuYZS13, author = {Ying{-}Ying Xu and Fan Yang and Yang Zhang and Hong{-}Bin Shen}, title = {An image-based multi-label human protein subcellular localization predictor (\emph{i}Locator) reveals protein mislocalizations in cancer tissues}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {2032--2040}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt320}, doi = {10.1093/BIOINFORMATICS/BTT320}, timestamp = {Tue, 04 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/XuYZS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/XueXWZ13, author = {Zhidong Xue and Dong Xu and Yan Wang and Yang Zhang}, title = {ThreaDom: extracting protein domain boundary information from multiple threading alignments}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {247--256}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt209}, doi = {10.1093/BIOINFORMATICS/BTT209}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/XueXWZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/YadavKKD13, author = {Amit Kumar Yadav and Puneet Kumar Kadimi and Dhirendra Kumar and Debasis Dash}, title = {ProteoStats - a library for estimating false discovery rates in proteomics pipelines}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2799--2800}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt490}, doi = {10.1093/BIOINFORMATICS/BTT490}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/YadavKKD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/YanGHW13, author = {Zhiqiang Yan and Liyong Guo and Liang Hu and Jin Wang}, title = {Specificity and affinity quantification of protein-protein interactions}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1127--1133}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt121}, doi = {10.1093/BIOINFORMATICS/BTT121}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/YanGHW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/YangCCC13, author = {Cheng{-}Hong Yang and Yu{-}Huei Cheng and Li{-}Yeh Chuang and Hsueh{-}Wei Chang}, title = {Drug-SNPing: an integrated drug-based, protein interaction-based tagSNP-based pharmacogenomics platform for {SNP} genotyping}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {758--764}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt037}, doi = {10.1093/BIOINFORMATICS/BTT037}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/YangCCC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/YangDRDRSL13, author = {Kun Yang and Ashok Reddy Dinasarapu and Edimara S. Reis and Robert A. DeAngelis and Daniel Ricklin and Shankar Subramaniam and John D. Lambris}, title = {{CMAP:} Complement Map Database}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1832--1833}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt269}, doi = {10.1093/BIOINFORMATICS/BTT269}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/YangDRDRSL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/YangGJ13, author = {Ei{-}Wen Yang and Thomas Girke and Tao Jiang}, title = {Differential gene expression analysis using coexpression and RNA-Seq data}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2153--2161}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt363}, doi = {10.1093/BIOINFORMATICS/BTT363}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/YangGJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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@article{DBLP:journals/bioinformatics/YangJZS13, author = {Jing Yang and Richard Jang and Yang Zhang and Hong{-}Bin Shen}, title = {High-accuracy prediction of transmembrane inter-helix contacts and application to {GPCR} 3D structure modeling}, journal = {Bioinform.}, volume = {29}, number = {20}, pages = {2579--2587}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt440}, doi = {10.1093/BIOINFORMATICS/BTT440}, timestamp = {Tue, 04 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/YangJZS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/YangLBW13, author = {James J. Yang and Jia Li and Anne Buu and L. Keoki Williams}, title = {Efficient inference of local ancestry}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2750--2756}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt488}, doi = {10.1093/BIOINFORMATICS/BTT488}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/YangLBW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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@article{DBLP:journals/bioinformatics/YostAMSJFH13, author = {Shawn E. Yost and Hakan Alakus and Hiroko Matsui and Richard B. Schwab and Kristen Jepsen and Kelly A. Frazer and Olivier Harismendy}, title = {Mutascope: sensitive detection of somatic mutations from deep amplicon sequencing}, journal = {Bioinform.}, volume = {29}, number = {15}, pages = {1908--1909}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt305}, doi = {10.1093/BIOINFORMATICS/BTT305}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/YostAMSJFH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/YoungsPDSB13, author = {Noah Youngs and Duncan Penfold{-}Brown and Kevin Drew and Dennis E. Shasha and Richard Bonneau}, title = {Parametric Bayesian priors and better choice of negative examples improve protein function prediction}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1190--1198}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt110}, doi = {10.1093/BIOINFORMATICS/BTT110}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/YoungsPDSB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/YousefiD13, author = {Mohammadmahdi R. Yousefi and Edward R. Dougherty}, title = {Intervention in gene regulatory networks with maximal phenotype alteration}, journal = {Bioinform.}, volume = {29}, number = {14}, pages = {1758--1767}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt242}, doi = {10.1093/BIOINFORMATICS/BTT242}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/YousefiD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/YuHV13, author = {Danni Yu and Wolfgang Huber and Olga Vitek}, title = {Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1275--1282}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt143}, doi = {10.1093/BIOINFORMATICS/BTT143}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/YuHV13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/YuMHZMT13, author = {Chuan{-}Yih Yu and Anoop M. Mayampurath and Yunli Hu and Shiyue Zhou and Yehia Mechref and Haixu Tang}, title = {Automated annotation and quantification of glycans using liquid chromatography-mass spectrometry}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {1706--1707}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt190}, doi = {10.1093/BIOINFORMATICS/BTT190}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/YuMHZMT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZaretzkiBHRSB13, author = {Jed Zaretzki and Charles Bergeron and Tao{-}wei Huang and Patrik Rydberg and S. Joshua Swamidass and Curt M. Breneman}, title = {RS-WebPredictor: a server for predicting CYP-mediated sites of metabolism on drug-like molecules}, journal = {Bioinform.}, volume = {29}, number = {4}, pages = {497--498}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts705}, doi = {10.1093/BIOINFORMATICS/BTS705}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZaretzkiBHRSB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZarringhalamEGSZ13, author = {Kourosh Zarringhalam and Ahmed Enayetallah and Alex Gutteridge and Ben Sidders and Daniel Ziemek}, title = {Molecular causes of transcriptional response: a Bayesian prior knowledge approach}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3167--3173}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt557}, doi = {10.1093/BIOINFORMATICS/BTT557}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZarringhalamEGSZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZeiselYBD13, author = {Amit Zeisel and Assif Yitzhaky and Noa Bossel Ben{-}Moshe and Eytan Domany}, title = {An accessible database for mouse and human whole transcriptome qPCR primers}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1355--1356}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt145}, doi = {10.1093/BIOINFORMATICS/BTT145}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZeiselYBD13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZengJC13, author = {Feng Zeng and Rui Jiang and Ting Chen}, title = {PyroHMMvar: a sensitive and accurate method to call short indels and SNPs for Ion Torrent and 454 data}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2859--2868}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt512}, doi = {10.1093/BIOINFORMATICS/BTT512}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZengJC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Zhang13, author = {Yu Zhang}, title = {A dynamic Bayesian Markov model for phasing and characterizing haplotypes in next-generation sequencing}, journal = {Bioinform.}, volume = {29}, number = {7}, pages = {878--885}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt065}, doi = {10.1093/BIOINFORMATICS/BTT065}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Zhang13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhangAM13, author = {Fengkai Zhang and Bastian Robert Angermann and Martin Meier{-}Schellersheim}, title = {The Simmune Modeler visual interface for creating signaling networks based on bi-molecular interactions}, journal = {Bioinform.}, volume = {29}, number = {9}, pages = {1229--1230}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt134}, doi = {10.1093/BIOINFORMATICS/BTT134}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangAM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhangHWZVM013, author = {Zhaojun Zhang and Shunping Huang and Jack Wang and Xiang Zhang and Fernando Pardo{-}Manuel de Villena and Leonard McMillan and Wei Wang}, title = {GeneScissors: a comprehensive approach to detecting and correcting spurious transcriptome inference owing to RNA-seq reads misalignment}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {291--299}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt216}, doi = {10.1093/BIOINFORMATICS/BTT216}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangHWZVM013.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhangKPS13, author = {Jiajie Zhang and Paschalia Kapli and Pavlos Pavlidis and Alexandros Stamatakis}, title = {A general species delimitation method with applications to phylogenetic placements}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2869--2876}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt499}, doi = {10.1093/BIOINFORMATICS/BTT499}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangKPS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhangLLDRZHC13, author = {Xiujun Zhang and Keqin Liu and Zhi{-}Ping Liu and B{\'{e}}atrice Duval and Jean{-}Michel Richer and Xing{-}Ming Zhao and Jin{-}Kao Hao and Luonan Chen}, title = {{NARROMI:} a noise and redundancy reduction technique improves accuracy of gene regulatory network inference}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {106--113}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts619}, doi = {10.1093/BIOINFORMATICS/BTS619}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangLLDRZHC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhangSC13, author = {Yuan Zhang and Yanni Sun and James R. Cole}, title = {A Sensitive and Accurate protein domain cLassification Tool {(SALT)} for short reads}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2103--2111}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt357}, doi = {10.1093/BIOINFORMATICS/BTT357}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangSC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhangWHXCP13, author = {Chao Zhang and Jiguang Wang and Kristina Hanspers and Dong Xu and Luonan Chen and Alexander R. Pico}, title = {{NOA:} a cytoscape plugin for network ontology analysis}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {2066--2067}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt334}, doi = {10.1093/BIOINFORMATICS/BTT334}, timestamp = {Tue, 23 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangWHXCP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhangWLF13, author = {Chengjun Zhang and Jun Wang and Manyuan Long and Chuanzhu Fan}, title = {gKaKs: the pipeline for genome-level Ka/Ks calculation}, journal = {Bioinform.}, volume = {29}, number = {5}, pages = {645--646}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt009}, doi = {10.1093/BIOINFORMATICS/BTT009}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangWLF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhangZ13, author = {Xiaohua Douglas Zhang and Zhaozhi Zhang}, title = {displayHTS: a {R} package for displaying data and results from high-throughput screening experiments}, journal = {Bioinform.}, volume = {29}, number = {6}, pages = {794--796}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt060}, doi = {10.1093/BIOINFORMATICS/BTT060}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhangZ13a, author = {Kui Zhang and Degui Zhi}, title = {Joint haplotype phasing and genotype calling of multiple individuals using haplotype informative reads}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2427--2434}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt418}, doi = {10.1093/BIOINFORMATICS/BTT418}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangZ13a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhangZ13b, author = {Quanwei Zhang and Zhengdong D. Zhang}, title = {SubNet: a Java application for subnetwork extraction}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2509--2511}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt430}, doi = {10.1093/BIOINFORMATICS/BTT430}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangZ13b.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhangZ13c, author = {Liangcai Zhang and Li Zhang}, title = {Use of autocorrelation scanning in {DNA} copy number analysis}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2678--2682}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt479}, doi = {10.1093/BIOINFORMATICS/BTT479}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangZ13c.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhangZYYLY13, author = {Lu Zhang and Jing Zhang and Jing Yang and Dingge Ying and Yu{-}Lung Lau and Wanling Yang}, title = {PriVar: a toolkit for prioritizing SNVs and indels from next-generation sequencing data}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {124--125}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts627}, doi = {10.1093/BIOINFORMATICS/BTS627}, timestamp = {Tue, 12 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangZYYLY13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhaoTAV13, author = {Yang Zhao and Takeyuki Tamura and Tatsuya Akutsu and Jean{-}Philippe Vert}, title = {Flux balance impact degree: a new definition of impact degree to properly treat reversible reactions in metabolic networks}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2178--2185}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt364}, doi = {10.1093/BIOINFORMATICS/BTT364}, timestamp = {Wed, 06 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoTAV13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZheNYQ13, author = {Shandian Zhe and Syed A. Z. Naqvi and Yifan Yang and Yuan Qi}, title = {Joint network and node selection for pathway-based genomic data analysis}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {1987--1996}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt335}, doi = {10.1093/BIOINFORMATICS/BTT335}, timestamp = {Thu, 03 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZheNYQ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhengMLHRMWWC13, author = {Caihong Zheng and Xuexia Miao and Yanen Li and Ying Huang and Jue Ruan and Xi Ma and Li Wang and Chung{-}I Wu and Jun Cai}, title = {Determination of genomic copy number alteration emphasizing a restriction site-based strategy of genome re-sequencing}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2813--2821}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt481}, doi = {10.1093/BIOINFORMATICS/BTT481}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhengMLHRMWWC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhongKWXX13, author = {Rui Zhong and Min Soo Kim and Michael A. White and Yang Xie and Guanghua Xiao}, title = {SbacHTS: Spatial background noise correction for High-Throughput RNAi Screening}, journal = {Bioinform.}, volume = {29}, number = {17}, pages = {2218--2220}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt358}, doi = {10.1093/BIOINFORMATICS/BTT358}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhongKWXX13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhouCWSC13, author = {Xi Zhou and Pengcheng Chen and Qiang Wei and Xueling Shen and Xin Chen}, title = {Human interactome resource and gene set linkage analysis for the functional interpretation of biologically meaningful gene sets}, journal = {Bioinform.}, volume = {29}, number = {16}, pages = {2024--2031}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt353}, doi = {10.1093/BIOINFORMATICS/BTT353}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhouCWSC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhouRR13, author = {Jindan Zhou and Andrew J. Richardson and Kenneth E. Rudd}, title = {EcoGene-RefSeq: EcoGene tools applied to the RefSeq prokaryotic genomes}, journal = {Bioinform.}, volume = {29}, number = {15}, pages = {1917--1918}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt302}, doi = {10.1093/BIOINFORMATICS/BTT302}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhouRR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhuNCWSL13, author = {Zhengwei Zhu and Beifang Niu and Jing Chen and Sitao Wu and Shulei Sun and Weizhong Li}, title = {MGAviewer: a desktop visualization tool for analysis of metagenomics alignment data}, journal = {Bioinform.}, volume = {29}, number = {1}, pages = {122--123}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts567}, doi = {10.1093/BIOINFORMATICS/BTS567}, timestamp = {Fri, 10 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhuNCWSL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZiebarthBC13, author = {Jesse D. Ziebarth and Anindya Bhattacharya and Yan Cui}, title = {Bayesian Network Webserver: a comprehensive tool for biological network modeling}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2801--2803}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt472}, doi = {10.1093/BIOINFORMATICS/BTT472}, timestamp = {Mon, 25 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZiebarthBC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZiminMPRSY13, author = {Aleksey V. Zimin and Guillaume Mar{\c{c}}ais and Daniela Puiu and Michael Roberts and Steven L. Salzberg and James A. Yorke}, title = {The MaSuRCA genome assembler}, journal = {Bioinform.}, volume = {29}, number = {21}, pages = {2669--2677}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt476}, doi = {10.1093/BIOINFORMATICS/BTT476}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZiminMPRSY13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZorzanLEPLB13, author = {Simone Zorzan and Erika Lorenzetto and Michele Ettorre and Valeria Pontelli and Carlo Laudanna and Mario Buffelli}, title = {{HOMECAT:} consensus homologs mapping for interspecific knowledge transfer and functional genomic data integration}, journal = {Bioinform.}, volume = {29}, number = {12}, pages = {1574--1576}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt189}, doi = {10.1093/BIOINFORMATICS/BTT189}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZorzanLEPLB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZouNH13, author = {Lingyun Zou and Chonghan Nan and Fuquan Hu}, title = {Accurate prediction of bacterial type {IV} secreted effectors using amino acid composition and {PSSM} profiles}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3135--3142}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt554}, doi = {10.1093/BIOINFORMATICS/BTT554}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZouNH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZschalerG13, author = {Gerd Zschaler and Thilo Gross}, title = {Largenet2: an object-oriented programming library for simulating large adaptive networks}, journal = {Bioinform.}, volume = {29}, number = {2}, pages = {277--278}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/bts663}, doi = {10.1093/BIOINFORMATICS/BTS663}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZschalerG13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZytnickiLQ13, author = {Matthias Zytnicki and YuFei Luo and Hadi Quesneville}, title = {Efficient comparison of sets of intervals with NC-lists}, journal = {Bioinform.}, volume = {29}, number = {7}, pages = {933--939}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt070}, doi = {10.1093/BIOINFORMATICS/BTT070}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZytnickiLQ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/duVerleTMKT13, author = {David duVerle and Ichiro Takeuchi and Yuko Murakami{-}Tonami and Kenji Kadomatsu and Koji Tsuda}, title = {Discovering combinatorial interactions in survival data}, journal = {Bioinform.}, volume = {29}, number = {23}, pages = {3053--3059}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt532}, doi = {10.1093/BIOINFORMATICS/BTT532}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/duVerleTMKT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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