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@article{DBLP:journals/bib/0002ASDMK21,
author = {Md. Mehedi Hasan and
Md. Ashad Alam and
Watshara Shoombuatong and
Hong{-}Wen Deng and
Balachandran Manavalan and
Hiroyuki Kurata},
title = {NeuroPred-FRL: an interpretable prediction model for identifying neuropeptide
using feature representation learning},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab167},
doi = {10.1093/BIB/BBAB167},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/0002ASDMK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/0002DBUM21,
author = {Sagnik Sen and
Ashmita Dey and
Sanghamitra Bandhyopadhyay and
Vladimir N. Uversky and
Ujjwal Maulik},
title = {Understanding structural malleability of the SARS-CoV-2 proteins and
relation to the comorbidities},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab232},
doi = {10.1093/BIB/BBAB232},
timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/0002DBUM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/0004HYLZQW21,
author = {Jing Qin and
Yaohua Hu and
Jen{-}Chih Yao and
Ricky Wai Tak Leung and
Yongqiang Zhou and
Yiming Qin and
Junwen Wang},
title = {Cell fate conversion prediction by group sparse optimization method
utilizing single-cell and bulk OMICs data},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab311},
doi = {10.1093/BIB/BBAB311},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/0004HYLZQW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/0020GKK21,
author = {Jian Zhang and
Sina Ghadermarzi and
Akila Katuwawala and
Lukasz A. Kurgan},
title = {DNAgenie: accurate prediction of DNA-type-specific binding residues
in protein sequences},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab336},
doi = {10.1093/BIB/BBAB336},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/0020GKK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/0053LXWPSY21,
author = {Ying Zhang and
Yan Liu and
Jian Xu and
Xiaoyu Wang and
Xinxin Peng and
Jiangning Song and
Dong{-}Jun Yu},
title = {Leveraging the attention mechanism to improve the identification of
{DNA} N6-methyladenine sites},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab351},
doi = {10.1093/BIB/BBAB351},
timestamp = {Wed, 15 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/0053LXWPSY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/0084CR0F21,
author = {Yu Zhang and
Yichao Cai and
Xavier Roca and
Chee Keong Kwoh and
Melissa Jane Fullwood},
title = {Chromatin loop anchors predict transcript and exon usage},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab254},
doi = {10.1093/BIB/BBAB254},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/0084CR0F21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AbdollahiLSC21,
author = {Sina Abdollahi and
Peng{-}Chan Lin and
Meng{-}Ru Shen and
Jung{-}Hsien Chiang},
title = {Precise uncertain significance prediction using latent space matrix
factorization models: genomics variant and heterogeneous clinical
data-driven approaches},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa281},
doi = {10.1093/BIB/BBAA281},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/AbdollahiLSC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AbriataP21,
author = {Luciano A. Abriata and
Matteo Dal Peraro},
title = {State-of-the-art web services for de novo protein structure prediction},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa139},
doi = {10.1093/BIB/BBAA139},
timestamp = {Tue, 13 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/AbriataP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AgapitoPJ21,
author = {Giuseppe Agapito and
Chiara Pastrello and
Igor Jurisica},
title = {Comprehensive pathway enrichment analysis workflows: {COVID-19} case
study},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {676--689},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa377},
doi = {10.1093/BIB/BBAA377},
timestamp = {Wed, 14 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/AgapitoPJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AgrawalBMSR21,
author = {Piyush Agrawal and
Dhruv Bhagat and
Manish Mahalwal and
Neelam Sharma and
Gajendra P. S. Raghava},
title = {AntiCP 2.0: an updated model for predicting anticancer peptides},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa153},
doi = {10.1093/BIB/BBAA153},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/AgrawalBMSR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AhammadAMATTFAS21,
author = {Foysal Ahammad and
Rahat Alam and
Rasel Mahmud and
Shahina Akhter and
Enamul Kabir Talukder and
Al Mahmud Tonmoy and
Salman Fahim and
Khalid Al{-}Ghamdi and
Abdus Samad and
Ishtiaq Qadri},
title = {Pharmacoinformatics and molecular dynamics simulation-based phytochemical
screening of neem plant (Azadiractha indica) against human cancer
by targeting {MCM7} protein},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab098},
doi = {10.1093/BIB/BBAB098},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/AhammadAMATTFAS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AhmedSCMCZY021,
author = {Khandakar Tanvir Ahmed and
Jiao Sun and
William Chen and
Irene Martinez and
Sze Cheng and
Wencai Zhang and
Jeongsik Yong and
Wei Zhang},
title = {In silico model for miRNA-mediated regulatory network in cancer},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab264},
doi = {10.1093/BIB/BBAB264},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/AhmedSCMCZY021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AhsanLFZMBC21,
author = {Md. Asif Ahsan and
Yongjing Liu and
Cong Feng and
Yincong Zhou and
Guangyuan Ma and
Youhuang Bai and
Ming Chen},
title = {Bioinformatics resources facilitate understanding and harnessing clinical
research of SARS-CoV-2},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {714--725},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa416},
doi = {10.1093/BIB/BBAA416},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/AhsanLFZMBC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AlamKISWMI21,
author = {Aftab Alam and
Arbaaz Khan and
Nikhat Imam and
Mohd Faizan Siddiqui and
Mohd Waseem and
Md. Zubbair Malik and
Romana Ishrat},
title = {Design of an epitope-based peptide vaccine against the SARS-CoV-2:
a vaccine-informatics approach},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1309--1323},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa340},
doi = {10.1093/BIB/BBAA340},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/AlamKISWMI21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AlsulamiTJBMBCV21,
author = {Ali F. Alsulami and
Sherine E. Thomas and
Arian R. Jamasb and
Christopher A. Beaudoin and
Ismail Moghul and
Bridget Bannerman and
Liviu Copoiu and
Sundeep Chaitanya Vedithi and
Pedro Torres and
Tom L. Blundell},
title = {SARS-CoV-2 3D database: understanding the coronavirus proteome and
evaluating possible drug targets},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {769--780},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa404},
doi = {10.1093/BIB/BBAA404},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/AlsulamiTJBMBCV21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AlsulamiTMACVB21,
author = {Ali F. Alsulami and
Pedro H. M. Torres and
Ismail Moghul and
Sheikh Mohammed Arif and
Amanda K. Chaplin and
Sundeep Chaitanya Vedithi and
Tom L. Blundell},
title = {{COSMIC} Cancer Gene Census 3D database: understanding the impacts
of mutations on cancer targets},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab220},
doi = {10.1093/BIB/BBAB220},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/AlsulamiTMACVB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AlyousfiBC21,
author = {Dareen Alyousfi and
Diana Baralle and
Andrew Collins},
title = {Essentiality-specific pathogenicity prioritization gene score to improve
filtering of disease sequence data},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1782--1789},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa029},
doi = {10.1093/BIB/BBAA029},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/AlyousfiBC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AmparoBAVA21,
author = {Roberto Del Amparo and
Catarina Branco and
Jes{\'{u}}s Arenas and
Alberto Vicens and
Miguel Arenas},
title = {Analysis of selection in protein-coding sequences accounting for common
biases},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa431},
doi = {10.1093/BIB/BBAA431},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/AmparoBAVA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AnLCDDXZGLG21,
author = {Bingxing An and
Mang Liang and
Tianpeng Chang and
Xinghai Duan and
Lili Du and
Lingyang Xu and
Lupei Zhang and
Xue Gao and
Junya Li and
Huijiang Gao},
title = {{KCRR:} a nonlinear machine learning with a modified genomic similarity
matrix improved the genomic prediction efficiency},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab132},
doi = {10.1093/BIB/BBAB132},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/AnLCDDXZGLG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AnY21,
author = {Qi An and
Liang Yu},
title = {A heterogeneous network embedding framework for predicting similarity-based
drug-target interactions},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab275},
doi = {10.1093/BIB/BBAB275},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/AnY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AromolaranAIO21,
author = {Olufemi Aromolaran and
Damilare Aromolaran and
Itunuoluwa Isewon and
Jelili Oyelade},
title = {Machine learning approach to gene essentiality prediction: a review},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab128},
doi = {10.1093/BIB/BBAB128},
timestamp = {Sun, 06 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/AromolaranAIO21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AtaWFOKL21,
author = {Sezin Kircali Ata and
Min Wu and
Yuan Fang and
Le Ou{-}Yang and
Chee Keong Kwoh and
Xiaoli Li},
title = {Recent advances in network-based methods for disease gene prediction},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa303},
doi = {10.1093/BIB/BBAA303},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/AtaWFOKL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AuwulRGSM21,
author = {Md Rabiul Auwul and
Md. Rezanur Rahman and
Esra Gov and
Md Shahjaman and
Mohammad Ali Moni},
title = {Bioinformatics and machine learning approach identifies potential
drug targets and pathways in {COVID-19}},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab120},
doi = {10.1093/BIB/BBAB120},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/AuwulRGSM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AwanyC21,
author = {Denis Awany and
Emile R. Chimusa},
title = {Heritability jointly explained by host genotype and microbiome: will
improve traits prediction?},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa175},
doi = {10.1093/BIB/BBAA175},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/AwanyC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AzadA21,
author = {A. K. M. Azad and
Salem A. Alyami},
title = {Discovering novel cancer bio-markers in acquired lapatinib resistance
using Bayesian methods},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab137},
doi = {10.1093/BIB/BBAB137},
timestamp = {Tue, 05 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/AzadA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AzadDNSLV21,
author = {A. K. M. Azad and
Mojdeh Dinarvand and
Alireza Nematollahi and
Joshua Swift and
Louise Lutze{-}Mann and
Fatemeh Vafaee},
title = {A comprehensive integrated drug similarity resource for in-silico
drug repositioning and beyond},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa126},
doi = {10.1093/BIB/BBAA126},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/AzadDNSLV21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Badaczewska-Dawid21,
author = {Aleksandra E. Badaczewska{-}Dawid and
Sebastian Kmiecik and
Michal Kolinski},
title = {Docking of peptides to GPCRs using a combination of CABS-dock with
FlexPepDock refinement},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa109},
doi = {10.1093/BIB/BBAA109},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/Badaczewska-Dawid21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BadkasLS21,
author = {Apurva Badkas and
S{\'{e}}bastien De Landtsheer and
Thomas Sauter},
title = {Topological network measures for drug repositioning},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa357},
doi = {10.1093/BIB/BBAA357},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/BadkasLS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BagherianKJSDN21,
author = {Maryam Bagherian and
Renaid B. Kim and
Cheng Jiang and
Maureen A. Sartor and
Harm Derksen and
Kayvan Najarian},
title = {Coupled matrix-matrix and coupled tensor-matrix completion methods
for predicting drug-target interactions},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {2161--2171},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa025},
doi = {10.1093/BIB/BBAA025},
timestamp = {Mon, 07 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/BagherianKJSDN21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BagherianSWSNN21,
author = {Maryam Bagherian and
Elyas Sabeti and
Kai Wang and
Maureen A. Sartor and
Zaneta Nikolovska{-}Coleska and
Kayvan Najarian},
title = {Machine learning approaches and databases for prediction of drug-target
interaction: a survey paper},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {247--269},
year = {2021},
url = {https://doi.org/10.1093/bib/bbz157},
doi = {10.1093/BIB/BBZ157},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/BagherianSWSNN21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BagherianSWSNN21a,
author = {Maryam Bagherian and
Elyas Sabeti and
Kai Wang and
Maureen A. Sartor and
Zaneta Nikolovska{-}Coleska and
Kayvan Najarian},
title = {Erratum to: Machine learning approaches and databases for prediction
of drug-target interaction: a survey paper},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {606},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa020},
doi = {10.1093/BIB/BBAA020},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/BagherianSWSNN21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BaiTXLHY21,
author = {Qifeng Bai and
Shuoyan Tan and
Tingyang Xu and
Huanxiang Liu and
Junzhou Huang and
Xiaojun Yao},
title = {MolAICal: a soft tool for 3D drug design of protein targets by artificial
intelligence and classical algorithm},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa161},
doi = {10.1093/BIB/BBAA161},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/BaiTXLHY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BanerjeeVFEW21,
author = {Sagnik Banerjee and
Valeria Vel{\'{a}}squez{-}Zapata and
Gregory Fuerst and
J. Mitch Elmore and
Roger P. Wise},
title = {{NGPINT:} a next-generation protein-protein interaction software},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa351},
doi = {10.1093/BIB/BBAA351},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/BanerjeeVFEW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BaptistaFR21,
author = {Delora Baptista and
Pedro G. Ferreira and
Miguel Rocha},
title = {Deep learning for drug response prediction in cancer},
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volume = {22},
number = {1},
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volume = {22},
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volume = {22},
number = {6},
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volume = {22},
number = {2},
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number = {6},
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volume = {22},
number = {1},
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@article{DBLP:journals/bib/BernasconiCMPC21,
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Arif Canakoglu and
Marco Masseroli and
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mitigation of {COVID-19}},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
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@article{DBLP:journals/bib/BerrarD21,
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pages = {1513--1514},
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@article{DBLP:journals/bib/BharadwajDYMKD21,
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inhibition of SARS-CoV-2 Mpro},
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volume = {22},
number = {2},
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@article{DBLP:journals/bib/BhartiG21,
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Dominik G. Grimm},
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number = {1},
pages = {178--193},
year = {2021},
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timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
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@article{DBLP:journals/bib/BhattacharyaHFP21,
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Alina M. Hamilton and
Helena Furberg and
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Melissa A. Troester and
Katherine A. Hoadley and
Michael I. Love},
title = {An approach for normalization and quality control for NanoString {RNA}
expression data},
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volume = {22},
number = {3},
year = {2021},
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timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
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@article{DBLP:journals/bib/BhuyanPR21,
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Itsik Pe'er and
M. Sohel Rahman},
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volume = {22},
number = {4},
year = {2021},
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doi = {10.1093/BIB/BBAA238},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
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bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BinattiBBC21,
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Silvia Bresolin and
Stefania Bortoluzzi and
Alessandro Coppe},
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journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
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timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
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@article{DBLP:journals/bib/BkhetanCOGR21,
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Gursharan Chana and
Cheng Soon Ong and
Benjamin Goudey and
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volume = {22},
number = {5},
year = {2021},
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timestamp = {Wed, 22 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/BkhetanCOGR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BkhetanCRVG21,
author = {Ziad Al Bkhetan and
Gursharan Chana and
Kotagiri Ramamohanarao and
Karin Verspoor and
Benjamin Goudey},
title = {Evaluation of consensus strategies for haplotype phasing},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa280},
doi = {10.1093/BIB/BBAA280},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/BkhetanCRVG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BoileauAVD21,
author = {Etienne Boileau and
Janine Altm{\"{u}}ller and
Isabel S. Naarmann{-}de Vries and
Christoph Dieterich},
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genome-wide dynamics of {RNA} turnover},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
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doi = {10.1093/BIB/BBAB219},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/BoileauAVD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/BonidiaSDPLCS21,
author = {Robson Bonidia and
Lucas Dias H. Sampaio and
Douglas Silva Domingues and
Alexandre Rossi Paschoal and
Fabr{\'{\i}}cio Martins Lopes and
Andr{\'{e}} C. P. L. F. de Carvalho and
Danilo Sipoli Sanches},
title = {Feature extraction approaches for biological sequences: a comparative
study of mathematical features},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab011},
doi = {10.1093/BIB/BBAB011},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/BonidiaSDPLCS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/BonniciMG21,
author = {Vincenzo Bonnici and
Emiliano Maresi and
Rosalba Giugno},
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volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa198},
doi = {10.1093/BIB/BBAA198},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/BonniciMG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BorchertMTHAKVS21,
author = {Florian Borchert and
Andreas Mock and
Aurelie Tomczak and
Jonas H{\"{u}}gel and
Samer Alkarkoukly and
Alexander Knurr and
Anna{-}Lena Volckmar and
Albrecht Stenzinger and
Peter Schirmacher and
J{\"{u}}rgen Debus and
Dirk J{\"{a}}ger and
Thomas Longerich and
Stefan Fr{\"{o}}hling and
Roland Eils and
Nina Bougatf and
Ulrich Sax and
Matthieu{-}P. Schapranow},
title = {Knowledge bases and software support for variant interpretation in
precision oncology},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab246},
doi = {10.1093/BIB/BBAB246},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/BorchertMTHAKVS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BorchertMTHAKVS21a,
author = {Florian Borchert and
Andreas Mock and
Aurelie Tomczak and
Jonas H{\"{u}}gel and
Samer Alkarkoukly and
Alexander Knurr and
Anna{-}Lena Volckmar and
Albrecht Stenzinger and
Peter Schirmacher and
J{\"{u}}rgen Debus and
Dirk J{\"{a}}ger and
Thomas Longerich and
Stefan Fr{\"{o}}hling and
Roland Eils and
Nina Bougatf and
Ulrich Sax and
Matthieu{-}P. Schapranow},
title = {Knowledge bases and software support for variant interpretation in
precision oncology},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab134},
doi = {10.1093/BIB/BBAB134},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/BorchertMTHAKVS21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BrondumMB21,
author = {Rasmus Froberg Br{\o}ndum and
Thomas Yssing Michaelsen and
Martin B{\o}gsted},
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journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {2012--2019},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa014},
doi = {10.1093/BIB/BBAA014},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/BrondumMB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/BugnonYMS21,
author = {Leandro A Bugnon and
Cristian A. Yones and
Diego H. Milone and
Georgina Stegmayer},
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based on machine learning},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa184},
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timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
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@article{DBLP:journals/bib/BurgosBFTC21,
author = {Ninon Burgos and
Simona Bottani and
Johann Faouzi and
Elina Thibeau{-}Sutre and
Olivier Colliot},
title = {Deep learning for brain disorders: from data processing to disease
treatment},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1560--1576},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa310},
doi = {10.1093/BIB/BBAA310},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/BurgosBFTC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/CaiFZLZJSP21,
author = {Zena Cai and
Yunshi Fan and
Zheng Zhang and
Congyu Lu and
Zhaozhong Zhu and
Taijiao Jiang and
Tongling Shan and
Yousong Peng},
title = {VirusCircBase: a database of virus circular RNAs},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {2182--2190},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa052},
doi = {10.1093/BIB/BBAA052},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/CaiFZLZJSP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/CaiLHLZZZGWJZP21,
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Congyu Lu and
Jun He and
Li Liu and
Yuanqiang Zou and
Zheng Zhang and
Zhaozhong Zhu and
Xingyi Ge and
Aiping Wu and
Taijiao Jiang and
Heping Zheng and
Yousong Peng},
title = {Identification and characterization of circRNAs encoded by MERS-CoV,
SARS-CoV-1 and SARS-CoV-2},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1297--1308},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa334},
doi = {10.1093/BIB/BBAA334},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/CaiLHLZZZGWJZP21.bib},
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@article{DBLP:journals/bib/CaiLXMWFZS21,
author = {Lijun Cai and
Changcheng Lu and
Junlin Xu and
Yajie Meng and
Peng Wang and
Xiangzheng Fu and
Xiangxiang Zeng and
Yansen Su},
title = {Drug repositioning based on the heterogeneous information fusion graph
convolutional network},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab319},
doi = {10.1093/BIB/BBAB319},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/CaiLXMWFZS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/CaiNML21,
author = {Menglan Cai and
Canh Hao Nguyen and
Hiroshi Mamitsuka and
Limin Li},
title = {{XGSEA:} CROSS-species gene set enrichment analysis via domain adaptation},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa406},
doi = {10.1093/BIB/BBAA406},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/CaiNML21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/CaiWFXZZ21,
author = {Lijun Cai and
Li Wang and
Xiangzheng Fu and
Chenxing Xia and
Xiangxiang Zeng and
Quan Zou},
title = {ITP-Pred: an interpretable method for predicting, therapeutic peptides
with fused features low-dimension representation},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa367},
doi = {10.1093/BIB/BBAA367},
timestamp = {Tue, 02 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/CaiWFXZZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/CaiXZDSLDLHZ21,
author = {Jinpu Cai and
Yuyang Xu and
Wen Zhang and
Shiying Ding and
Yuewei Sun and
Jingyi Lyu and
Meiyu Duan and
Shuai Liu and
Lan Huang and
Fengfeng Zhou},
title = {A comprehensive comparison of residue-level methylation levels with
the regression-based gene-level methylation estimations by ReGear},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa253},
doi = {10.1093/BIB/BBAA253},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/CaiXZDSLDLHZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/CanakogluPGNMC21,
author = {Arif Canakoglu and
Pietro Pinoli and
Andrea Gulino and
Luca Nanni and
Marco Masseroli and
Stefano Ceri},
title = {Federated sharing and processing of genomic datasets for tertiary
data analysis},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa091},
doi = {10.1093/BIB/BBAA091},
timestamp = {Thu, 17 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/CanakogluPGNMC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/CannataroH21,
author = {Mario Cannataro and
Andrew Harrison},
title = {Bioinformatics helping to mitigate the impact of {COVID-19} - Editorial},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {613--615},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab063},
doi = {10.1093/BIB/BBAB063},
timestamp = {Wed, 14 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/CannataroH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/CaoHCLWZWCSW21,
author = {Xiao Cao and
Wenjia He and
Zitan Chen and
Yifan Li and
Kexin Wang and
Hongbo Zhang and
Lesong Wei and
Lizhen Cui and
Ran Su and
Leyi Wei},
title = {{PSSP-MVIRT:} peptide secondary structure prediction based on a multi-view
deep learning architecture},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab203},
doi = {10.1093/BIB/BBAB203},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/CaoHCLWZWCSW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/CaoKELDKCWGL21,
author = {Chen Cao and
Devin Kwok and
Shannon Edie and
Qing Li and
Bowei Ding and
Pathum Kossinna and
Simone Campbell and
Jingjing Wu and
Matthew Greenberg and
Quan Long},
title = {kTWAS: integrating kernel machine with transcriptome-wide association
studies improves statistical power and reveals novel genes},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa270},
doi = {10.1093/BIB/BBAA270},
timestamp = {Thu, 13 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/CaoKELDKCWGL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/CarusoSCC21,
author = {Francesca P. Caruso and
Giovanni Scala and
Luigi Cerulo and
Michele Ceccarelli},
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tools},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {701--713},
year = {2021},
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doi = {10.1093/BIB/BBAA328},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/CarusoSCC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/CastellanaBPPBV21,
author = {Stefano Castellana and
Tommaso Biagini and
Luca Parca and
Francesco Petrizzelli and
Salvatore Daniele Bianco and
Angelo Luigi Vescovi and
Massimo Carella and
Tommaso Mazza},
title = {A comparative benchmark of classic {DNA} motif discovery tools on
synthetic data},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab303},
doi = {10.1093/BIB/BBAB303},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/CastellanaBPPBV21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChangFHZL21,
author = {Yafei Chang and
Qilian Fan and
Jialin Hou and
Yu Zhang and
Jing Li},
title = {A community-supported metaproteomic pipeline for improving peptide
identifications in hydrothermal vent microbiota},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab052},
doi = {10.1093/BIB/BBAB052},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChangFHZL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/CharoenkwanCNHM21,
author = {Phasit Charoenkwan and
Wararat Chiangjong and
Chanin Nantasenamat and
Md. Mehedi Hasan and
Balachandran Manavalan and
Watshara Shoombuatong},
title = {StackIL6: a stacking ensemble model for improving the prediction of
{IL-6} inducing peptides},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab172},
doi = {10.1093/BIB/BBAB172},
timestamp = {Fri, 07 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/CharoenkwanCNHM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChattopadhyayKV21,
author = {Subhayan Chattopadhyay and
Jenny Karlsson and
Anders Valind and
Natalie Andersson and
David Gisselsson},
title = {Tracing the evolution of aneuploid cancers by multiregional sequencing
with {CRUST}},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab292},
doi = {10.1093/BIB/BBAB292},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChattopadhyayKV21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChelyshevaPO21,
author = {Irina Chelysheva and
Andrew J. Pollard and
Daniel O'Connor},
title = {{RNA2HLA:} HLA-based quality control of RNA-seq datasets},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab055},
doi = {10.1093/BIB/BBAB055},
timestamp = {Wed, 02 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ChelyshevaPO21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenCLZLLCZ21,
author = {Jiaxing Chen and
Chinwang Cheong and
Liang Lan and
Xin Zhou and
Jiming Liu and
Aiping Lyu and
William K. Cheung and
Lu Zhang},
title = {DeepDRIM: a deep neural network to reconstruct cell-type-specific
gene regulatory network using single-cell RNA-seq data},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab325},
doi = {10.1093/BIB/BBAB325},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChenCLZLLCZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenFWLX21,
author = {Maozi Chen and
Zhiwei Feng and
Siyi Wang and
Weiwei Lin and
Xiang{-}Qun Xie},
title = {MCCS, a novel characterization method for protein-ligand complex},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa239},
doi = {10.1093/BIB/BBAA239},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ChenFWLX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenGHS21,
author = {Yuanyuan Chen and
Yu Gu and
Zixi Hu and
Xiao Sun},
title = {Sample-specific perturbation of gene interactions identifies breast
cancer subtypes},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa268},
doi = {10.1093/BIB/BBAA268},
timestamp = {Thu, 05 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ChenGHS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenGLYYZSWZLWC21,
author = {Xin Chen and
Wei Gao and
Jie Li and
Dongfang You and
Zhaolei Yu and
Mingzhi Zhang and
Fang Shao and
Yongyue Wei and
Ruyang Zhang and
Theis Lange and
Qianghu Wang and
Feng Chen and
Xiang Lu and
Yang Zhao},
title = {A predictive paradigm for {COVID-19} prognosis based on the longitudinal
measure of biomarkers},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab206},
doi = {10.1093/BIB/BBAB206},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChenGLYYZSWZLWC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenHLLM21,
author = {Shifu Chen and
Chang{-}Shou He and
Yingqiang Li and
Zhicheng Li and
Charles E. Melan{\c{c}}on},
title = {A computational toolset for rapid identification of SARS-CoV-2, other
viruses and microorganisms from sequencing data},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {924--935},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa231},
doi = {10.1093/BIB/BBAA231},
timestamp = {Tue, 28 Mar 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChenHLLM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenLL21,
author = {Jing Chen and
Lindsey J. Leach and
Zewei Luo},
title = {Letter to the Editor: Methods for mapping quantitative trait loci
in autotetraploid species},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbz148},
doi = {10.1093/BIB/BBZ148},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChenLL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenLWJCKSS21,
author = {Huaming Chen and
Fuyi Li and
Lei Wang and
Yaochu Jin and
Chi{-}Hung Chi and
Lukasz A. Kurgan and
Jiangning Song and
Jun Shen},
title = {Systematic evaluation of machine learning methods for identifying
human-pathogen protein-protein interactions},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa068},
doi = {10.1093/BIB/BBAA068},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChenLWJCKSS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenLZWZ21,
author = {Xing Chen and
Tian{-}Hao Li and
Yan Zhao and
Chun{-}Chun Wang and
Chi{-}Chi Zhu},
title = {Deep-belief network for predicting potential miRNA-disease associations},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa186},
doi = {10.1093/BIB/BBAA186},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChenLZWZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenLZYW21,
author = {Xingjian Chen and
Lingjing Liu and
Weitong Zhang and
Jianyi Yang and
Ka{-}Chun Wong},
title = {Human host status inference from temporal microbiome changes via recurrent
neural networks},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab223},
doi = {10.1093/BIB/BBAB223},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChenLZYW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenMNMHCMSKBMH21,
author = {Jieming Chen and
Shravan Madireddi and
Deepti Nagarkar and
Maciej Migdal and
Jason A. Vander Heiden and
Diana Chang and
Kiran Mukhyala and
Suresh Selvaraj and
Edward E. Kadel and
Matthew J. Brauer and
Sanjeev Mariathasan and
Julie Hunkapiller and
Suchit Jhunjhunwala and
Matthew L. Albert and
Christian Hammer},
title = {In silico tools for accurate {HLA} and {KIR} inference from clinical
sequencing data empower immunogenetics on individual-patient and population
scales},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa223},
doi = {10.1093/BIB/BBAA223},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChenMNMHCMSKBMH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenPCT21,
author = {Tyrone Chen and
Melcy Philip and
Kim{-}Anh L{\^{e}} Cao and
Sonika Tyagi},
title = {A multi-modal data harmonisation approach for discovery of {COVID-19}
drug targets},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab185},
doi = {10.1093/BIB/BBAB185},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChenPCT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenQHHP21,
author = {Jian Chen and
Xiaojun Qian and
Yifu He and
Xinghua Han and
Yueyin Pan},
title = {An artificial neural network model based on {DNA} damage response
genes to predict outcomes of lower-grade glioma patients},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab190},
doi = {10.1093/BIB/BBAB190},
timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ChenQHHP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenSZ21,
author = {Xing Chen and
Lian{-}Gang Sun and
Yan Zhao},
title = {{NCMCMDA:} miRNA-disease association prediction through neighborhood
constraint matrix completion},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {485--496},
year = {2021},
url = {https://doi.org/10.1093/bib/bbz159},
doi = {10.1093/BIB/BBZ159},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChenSZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenT21,
author = {Jen{-}Hao Chen and
Yufeng Jane Tseng},
title = {Different molecular enumeration influences in deep learning: an example
using aqueous solubility},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa092},
doi = {10.1093/BIB/BBAA092},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChenT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenW21,
author = {Junyi Chen and
Ka{-}Chun Wong},
title = {{RNCE:} network integration with reciprocal neighbors contextual encoding
for multi-modal drug community study on cancer targets},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa118},
doi = {10.1093/BIB/BBAA118},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChenW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenW21a,
author = {Ziyi Chen and
Aiping Wu},
title = {Progress and challenge for computational quantification of tissue
immune cells},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa358},
doi = {10.1093/BIB/BBAA358},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChenW21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenWSWLWW21,
author = {Liang Chen and
Changliang Wang and
Huiyan Sun and
Juexin Wang and
Yanchun Liang and
Yan Wang and
Garry Wong},
title = {The bioinformatics toolbox for circRNA discovery and analysis},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1706--1728},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa001},
doi = {10.1093/BIB/BBAA001},
timestamp = {Mon, 21 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ChenWSWLWW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenWWYCS21,
author = {Yong{-}Zi Chen and
Zhuo{-}Zhi Wang and
Yanan Wang and
Guoguang Ying and
Zhen Chen and
Jiangning Song},
title = {nhKcr: a new bioinformatics tool for predicting crotonylation sites
on human nonhistone proteins based on deep learning},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab146},
doi = {10.1093/BIB/BBAB146},
timestamp = {Mon, 17 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChenWWYCS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenXLLLGM21,
author = {Kexin Chen and
Haoming Xu and
Yiming Lei and
Pietro Li{\'{o}} and
Yuan Li and
Hongyan Guo and
Mohammad Ali Moni},
title = {Integration and interplay of machine learning and bioinformatics approach
to identify genetic interaction related to ovarian cancer chemoresistance},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab100},
doi = {10.1093/BIB/BBAB100},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ChenXLLLGM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenZ21,
author = {Jinyu Chen and
Louxin Zhang},
title = {A survey and systematic assessment of computational methods for drug
response prediction},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {232--246},
year = {2021},
url = {https://doi.org/10.1093/bib/bbz164},
doi = {10.1093/BIB/BBZ164},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChenZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenZWZ21,
author = {Xing Chen and
Chi Zhou and
Chun{-}Chun Wang and
Yan Zhao},
title = {Predicting potential small molecule-miRNA associations based on bounded
nuclear norm regularization},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab328},
doi = {10.1093/BIB/BBAB328},
timestamp = {Mon, 20 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ChenZWZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChengGLSZ21,
author = {Yu Cheng and
Yongshun Gong and
Yuansheng Liu and
Bosheng Song and
Quan Zou},
title = {Molecular design in drug discovery: a comprehensive review of deep
generative models},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab344},
doi = {10.1093/BIB/BBAB344},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChengGLSZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChengHZQWZ21,
author = {Liang Cheng and
Xudong Han and
Zijun Zhu and
Changlu Qi and
Ping Wang and
Xue Zhang},
title = {Functional alterations caused by mutations reflect evolutionary trends
of SARS-CoV-2},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1442--1450},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab042},
doi = {10.1093/BIB/BBAB042},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChengHZQWZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChengSSK21,
author = {Nuojin Cheng and
Ashley J. Schulte and
Fadil Santosa and
Jong Hyuk Kim},
title = {Machine learning application identifies novel gene signatures from
transcriptomic data of spontaneous canine hemangiosarcoma},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa252},
doi = {10.1093/BIB/BBAA252},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ChengSSK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChengZWS21,
author = {Jinyu Cheng and
Ji Zhang and
Zhongdao Wu and
Xiaoqiang Sun},
title = {Inferring microenvironmental regulation of gene expression from single-cell
{RNA} sequencing data using scMLnet with an application to {COVID-19}},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {988--1005},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa327},
doi = {10.1093/BIB/BBAA327},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChengZWS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChengZWS21a,
author = {Jinyu Cheng and
Ji Zhang and
Zhongdao Wu and
Xiaoqiang Sun},
title = {Corrigendum to: Inferring microenvironmental regulation of gene expression
from single-cell {RNA} sequencing data using scMLnet with an application
to {COVID-19}},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1511--1512},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab015},
doi = {10.1093/BIB/BBAB015},
timestamp = {Wed, 14 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChengZWS21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChiaraDGMPRZPPH21,
author = {Matteo Chiara and
Anna Maria D'Erchia and
Carmela Gissi and
Caterina Manzari and
Antonio Parisi and
Nicoletta Resta and
Federico Zambelli and
Ernesto Picardi and
Giulio Pavesi and
David Stephen Horner and
Graziano Pesole},
title = {Next generation sequencing of SARS-CoV-2 genomes: challenges, applications
and opportunities},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {616--630},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa297},
doi = {10.1093/BIB/BBAA297},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChiaraDGMPRZPPH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChuKWWZSSXW21,
author = {Yanyi Chu and
Aman Chandra Kaushik and
Xiangeng Wang and
Wei Wang and
Yufang Zhang and
Xiaoqi Shan and
Dennis Russell Salahub and
Yi Xiong and
Dong{-}Qing Wei},
title = {{DTI-CDF:} a cascade deep forest model towards the prediction of drug-target
interactions based on hybrid features},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {451--462},
year = {2021},
url = {https://doi.org/10.1093/bib/bbz152},
doi = {10.1093/BIB/BBZ152},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ChuKWWZSSXW21.bib},
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Lars Steinbr{\"{u}}ck and
Thomas F. Schulz and
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title = {Evaluating assembly and variant calling software for strain-resolved
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number = {3},
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phylogeny of the SARS-CoV-2 genome},
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Aron C. Eklund and
Istv{\'{a}}n Csabai and
Anders Gorm Pedersen and
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@article{DBLP:journals/bib/DongHJZGY21,
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Wei{-}Ming He and
Jing{-}Jing Ji and
Chi Zhang and
Yan Guo and
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title = {LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium
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title = {{SCDC:} bulk gene expression deconvolution by multiple single-cell
{RNA} sequencing references},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {416--427},
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timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
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number = {3},
year = {2021},
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@article{DBLP:journals/bib/DongZYLHC21,
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title = {BioMedR: an {R/CRAN} package for integrated data analysis pipeline
in biomedical study},
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number = {1},
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Adil Mardinoglu},
title = {Multi-omics approaches for revealing the complexity of cardiovascular
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number = {5},
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journal = {Briefings Bioinform.},
volume = {22},
number = {2},
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timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
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@article{DBLP:journals/bib/DotoloMRABCLNFT21,
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Riziero Esposito Abate and
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Fortunato Ciardiello and
Antonella De Luca and
Nicola Normanno and
Angelo M. Facchiano and
Roberto Tagliaferri},
title = {A multiple network-based bioinformatics pipeline for the study of
molecular mechanisms in oncological diseases for personalized medicine},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
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E. Shyong Tai and
Jianjun Liu and
Xueling Sim and
Shanshan Cheng and
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title = {Using off-target data from whole-exome sequencing to improve genotyping
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number = {3},
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@article{DBLP:journals/bib/DouYXZ21,
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number = {5},
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pig genome using short and long reads},
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number = {5},
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@article{DBLP:journals/bib/DuJMJMHDWZLH21,
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Jiaqi Jin and
Shan Mi and
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Chaochao Zhang and
Yuan Li and
Shaoshan Hu},
title = {m6A regulator-mediated methylation modification patterns and characteristics
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number = {5},
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@article{DBLP:journals/bib/DuLHJHTC21,
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Gaoyang Li and
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volume = {22},
number = {4},
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volume = {22},
number = {1},
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timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
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@article{DBLP:journals/bib/DurufleSRJDD21,
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title = {A powerful framework for an integrative study with heterogeneous omics
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number = {3},
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timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
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title = {DenvInD: dengue virus inhibitors database for clinical and molecular
research},
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number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa098},
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timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
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number = {5},
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timestamp = {Wed, 22 Sep 2021 01:00:00 +0200},
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number = {6},
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timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
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@article{DBLP:journals/bib/FabianOV21,
author = {Jes{\'{u}}s San Fabi{\'{a}}n and
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Jos{\'{e}} Manuel Garc{\'{\i}}a de la Vega},
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combined {NMR} theoretical and experimental results: leucine-67 in
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number = {5},
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Lijun Cheng and
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volume = {22},
number = {6},
year = {2021},
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timestamp = {Fri, 23 Sep 2022 01:00:00 +0200},
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bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/FanJSL21,
author = {Bing{-}Liang Fan and
Zheng Jiang and
Jun Sun and
Rong Liu},
title = {Systematic characterization and prediction of coenzyme A-associated
proteins using sequence and network information},
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volume = {22},
number = {4},
year = {2021},
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@article{DBLP:journals/bib/FangLXLX21,
author = {Zhao{-}Yu Fang and
Cui{-}Xiang Lin and
Yun{-}Pei Xu and
Hong{-}Dong Li and
Qing{-}Song Xu},
title = {{REBET:} a method to determine the number of cell clusters based on
batch effect removal},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
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@article{DBLP:journals/bib/FangYGCGC21,
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Haitao Yang and
Yuzhao Gao and
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Ellen L. Goode and
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journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
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timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
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@article{DBLP:journals/bib/FangZLWZL21,
author = {Senbiao Fang and
Ruoqian Zheng and
Chuqi Lei and
Jianxin Wang and
Ruiqing Zheng and
Min Li},
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in different species},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {963--975},
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timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/FangZLWZL21.bib},
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@article{DBLP:journals/bib/FangZLXWHWLSZPL21,
author = {Shisong Fang and
Lin Zhang and
Yingzhi Liu and
Wenye Xu and
Weihua Wu and
Ziheng Huang and
Xin Wang and
Hui Liu and
Ying Sun and
Renli Zhang and
Bo Peng and
Xiaodong Liu and
Xiao Sun and
Jun Yu and
Francis Ka{-}Leung Chan and
Siew Chien Ng and
Sunny Hei Wong and
Maggie Haitian Wang and
Tony Gin and
Gavin Matthew Joynt and
David Shu Cheong Hui and
Tiejian Feng and
William Ka Kei Wu and
Matthew Tak Vai Chan and
Xuan Zou and
Junjie Xia},
title = {Lysosome activation in peripheral blood mononuclear cells and prognostic
significance of circulating {LC3B} in {COVID-19}},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1466--1475},
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doi = {10.1093/BIB/BBAB043},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
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volume = {22},
number = {3},
year = {2021},
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timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
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Cristian Taccioli and
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journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {2172--2181},
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timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
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Yue Zhang and
Donghong Ji and
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information extraction},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
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author = {Zhiwei Feng and
Maozi Chen and
Tianjian Liang and
Mingzhe Shen and
Hui Chen and
Xiang{-}Qun Xie},
title = {Virus-CKB: an integrated bioinformatics platform and analysis resource
for {COVID-19} research},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {882--895},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa155},
doi = {10.1093/BIB/BBAA155},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
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@article{DBLP:journals/bib/FengCXLCZNSX21,
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Maozi Chen and
Ying Xue and
Tianjian Liang and
Hui Chen and
Yuehan Zhou and
Thomas D. Nolin and
Randall B. Smith and
Xiang{-}Qun Xie},
title = {{MCCS:} a novel recognition pattern-based method for fast track discovery
of anti-SARS-CoV-2 drugs},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {946--962},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa260},
doi = {10.1093/BIB/BBAA260},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/FengCXLCZNSX21.bib},
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Min Dai and
Yongjing Liu and
Ming Chen},
title = {Sequence repetitiveness quantification and de novo repeat detection
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volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa086},
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timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
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Yamil D. Mahmoud and
Florencia Veigas and
Dar{\'{\i}}o Rocha and
Mat{\'{\i}}as Miranda and
Joaqu{\'{\i}}n Merlo and
M{\'{o}}nica Balzarini and
Hugo D. Lujan and
Gabriel A. Rabinovich and
Mar{\'{\i}}a Romina Girotti},
title = {Unveiling the immune infiltrate modulation in cancer and response
to immunotherapy by {MIXTURE} - an enhanced deconvolution method},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
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timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/FernandezMVRMMB21.bib},
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James N. D. Battey and
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Nikolai V. Ivanov and
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title = {Metabolic networks of the Nicotiana genus in the spotlight: content,
progress and outlook},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa136},
doi = {10.1093/BIB/BBAA136},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/FoersterBSIM21.bib},
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Oriana Romano and
Silvio Bicciato},
title = {Computational methods for the integrative analysis of single-cell
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volume = {22},
number = {1},
pages = {20--29},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa042},
doi = {10.1093/BIB/BBAA042},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ForcatoRB21.bib},
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@article{DBLP:journals/bib/FortunatoMRKHLH21,
author = {Angelo Fortunato and
Diego Mallo and
Shawn M. Rupp and
Lorraine M. King and
Timothy Hardman and
Joseph Y. Lo and
Allison H. Hall and
Jeffrey R. Marks and
Eun{-}Sil Shelley Hwang and
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@article{DBLP:journals/bib/GaoLTWXQYY21,
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Richard Vickers and
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Jian Tang and
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Tripti Mishra and
Debarka Sengupta and
Gaurav Ahuja},
title = {EcTracker: Tracking and elucidating ectopic expression leveraging
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volume = {22},
number = {6},
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volume = {22},
number = {1},
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timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
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Thomas P. Karbanowicz},
title = {Comparative phylogenetic analysis of SARS-CoV-2 spike protein - possibility
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Hakon Hakonarson and
Zhi Wei},
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Darren A. Natale and
Lynn M. Schriml and
Sabyasach Sen and
Raja Mazumder},
title = {{COVID-19} biomarkers and their overlap with comorbidities in a disease
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volume = {22},
number = {6},
year = {2021},
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volume = {22},
number = {3},
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@article{DBLP:journals/bib/GongLCZCCZCH21,
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@article{DBLP:journals/bib/GoswamiBLBVCCPS21,
author = {Pratik Goswami and
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Jir{\'{\i}} Cerven and
Veronika Cervenov{\'{a}} and
Petr Pecinka and
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Miroslav Fojta and
V{\'{a}}clav Br{\'{a}}zda},
title = {SARS-CoV-2 hot-spot mutations are significantly enriched within inverted
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volume = {22},
number = {2},
pages = {1338--1345},
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timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
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volume = {22},
number = {4},
year = {2021},
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@article{DBLP:journals/bib/GuiWCFTCCL21,
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Jin{-}Huan Wei and
Yu{-}Hang Chen and
Liang{-}Min Fu and
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Jia{-}Zheng Cao and
Wei Chen and
Jun{-}Hang Luo},
title = {A new thinking: extended application of genomic selection to screen
multiomics data for development of novel hypoxia-immune biomarkers
and target therapy of clear cell renal cell carcinoma},
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volume = {22},
number = {6},
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@article{DBLP:journals/bib/Guo0LL21,
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Ke Yan and
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volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab358},
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timestamp = {Mon, 13 Dec 2021 00:00:00 +0100},
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@article{DBLP:journals/bib/GuoLCMSYHMSY21,
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Yongsheng Li and
Kara M. Cirillo and
Robert A. Marick and
Zhe Su and
Xing Yin and
Xu Hua and
Gordon B. Mills and
Nidhi Sahni and
S. Stephen Yi},
title = {mi-IsoNet: systems-scale microRNA landscape reveals rampant isoform-mediated
gain of target interaction diversity and signaling specificity},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab091},
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timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/GuoLCMSYHMSY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/GuoWWSLG21,
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Dongfang Wang and
Shicheng Wang and
Yiran Shan and
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journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa127},
doi = {10.1093/BIB/BBAA127},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/GuoWWSLG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/GuoYHYZCW21,
author = {Zhen{-}Hao Guo and
Zhu{-}Hong You and
De{-}Shuang Huang and
Hai{-}Cheng Yi and
Kai Zheng and
Zhan{-}Heng Chen and
Yan{-}Bin Wang},
title = {MeSHHeading2vec: a new method for representing MeSH headings as vectors
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journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {2085--2095},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa037},
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timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/GuoYHYZCW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/GuptaM21,
author = {Priya Gupta and
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journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab111},
doi = {10.1093/BIB/BBAB111},
timestamp = {Tue, 05 Oct 2021 01:00:00 +0200},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/GuptaMMKKMASA21,
author = {Krishan Gupta and
Sanjay Kumar Mohanty and
Aayushi Mittal and
Siddhant Kalra and
Suvendu Kumar and
Tripti Mishra and
Jatin Ahuja and
Debarka Sengupta and
Gaurav Ahuja},
title = {The Cellular basis of loss of smell in 2019-nCoV-infected individuals},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {873--881},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa168},
doi = {10.1093/BIB/BBAA168},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/GuptaMMKKMASA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/Gutierrez-Sacristan21,
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Carlos De Niz and
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Kenneth D. Mandl and
Paul Avillach},
title = {GenoPheno: cataloging large-scale phenotypic and next-generation sequencing
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journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {55--65},
year = {2021},
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@article{DBLP:journals/bib/HanZWTZ21,
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@article{DBLP:journals/bib/HanZZWHYLHDWDN21,
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Jiayin He and
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number = {5},
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Daria Bulanova and
Jaana Oikkonen and
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Wenyu Wang and
Erdogan Pekcan Erkan and
Olli Carp{\'{e}}n and
Titta Joutsiniemi and
Sakari Hietanen and
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Jing Tang and
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Beifang Niu},
title = {Comprehensive fundamental somatic variant calling and quality management
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number = {3},
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author = {Jiahua He and
Sheng{-}You Huang},
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volume = {22},
number = {6},
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De{-}Shuang Huang},
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volume = {22},
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@article{DBLP:journals/bib/HeT0G21,
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Quan Zou and
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journal = {Briefings Bioinform.},
volume = {22},
number = {6},
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@article{DBLP:journals/bib/HerrmannPHJB21,
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Philipp Probst and
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data},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
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author = {C{\'{e}}cile Hilpert and
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journal = {Briefings Bioinform.},
volume = {22},
number = {3},
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author = {David Hoksza and
Piotr Gawron and
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Jan Hasenauer and
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systems biology},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {608},
year = {2021},
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timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
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author = {Ping Hou and
Siqi Bao and
Dandan Fan and
Congcong Yan and
Jianzhong Su and
Jia Qu and
Meng Zhou},
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identifies novel prognostic {DNA} methylation signature in uveal melanoma},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
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timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
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@article{DBLP:journals/bib/HouXFML21,
author = {Chao Hou and
Haotai Xie and
Yang Fu and
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organelles and diseases},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
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doi = {10.1093/BIB/BBAA271},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/HouXFML21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Zilong Hou and
Yuning Yang and
Hui Li and
Ka{-}Chun Wong and
Xiangtao Li},
title = {iDeepSubMito: identification of protein submitochondrial localization
with deep learning},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
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timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
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Bo{-}Han Su and
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title = {Current development of integrated web servers for preclinical safety
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journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
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doi = {10.1093/BIB/BBAA160},
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@article{DBLP:journals/bib/HuGALPW21,
author = {Guanjing Hu and
Corrinne E. Grover and
Mark Arick II and
Meiling Liu and
Daniel G. Peterson and
Jonathan F. Wendel},
title = {Homoeologous gene expression and co-expression network analyses and
evolutionary inference in allopolyploids},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1819--1835},
year = {2021},
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timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
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bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HuLLZG21,
author = {Fei{-}Fei Hu and
Chun{-}Jie Liu and
Lan{-}Lan Liu and
Qiong Zhang and
An{-}Yuan Guo},
title = {Expression profile of immune checkpoint genes and their roles in predicting
immunotherapy response},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa176},
doi = {10.1093/BIB/BBAA176},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/HuLXLZJZSZ21,
author = {Hailin Hu and
Xianggen Liu and
An Xiao and
Yangyang Li and
Chengdong Zhang and
Tao Jiang and
Dan Zhao and
Sen Song and
Jianyang Zeng},
title = {Riboexp: an interpretable reinforcement learning framework for ribosome
density modeling},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa412},
doi = {10.1093/BIB/BBAA412},
timestamp = {Wed, 03 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/HuLXLZJZSZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/HuLZLHS21,
author = {Tao Hu and
Juan Li and
Hong Zhou and
Cixiu Li and
Edward C. Holmes and
Weifeng Shi},
title = {Bioinformatics resources for SARS-CoV-2 discovery and surveillance},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {631--641},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa386},
doi = {10.1093/BIB/BBAA386},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/HuLZLHS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/HuWHHY21,
author = {Lun Hu and
Xiaojuan Wang and
Yu{-}An Huang and
Pengwei Hu and
Zhu{-}Hong You},
title = {A survey on computational models for predicting protein-protein interactions},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab036},
doi = {10.1093/BIB/BBAB036},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/HuWHHY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HuWHWWJLY21,
author = {Fan Hu and
Lei Wang and
Yishen Hu and
Dongqi Wang and
Weijie Wang and
Jianbing Jiang and
Nan Li and
Peng Yin},
title = {A novel framework integrating {AI} model and enzymological experiments
promotes identification of SARS-CoV-2 3CL protease inhibitors and
activity-based probe},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab301},
doi = {10.1093/BIB/BBAB301},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/HuWHWWJLY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HuZHLG21,
author = {Hui Hu and
Qiong Zhang and
Fei{-}Fei Hu and
Chun{-}Jie Liu and
An{-}Yuan Guo},
title = {A comprehensive survey for human transcription factors on expression,
regulation, interaction, phenotype and cancer survival},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab002},
doi = {10.1093/BIB/BBAB002},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/HuZHLG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Huang021,
author = {Yixuan Huang and
Peng Zhang},
title = {Corrigendum to: Evaluation of machine learning approaches for cell-type
identification from single-cell transcriptomics data},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab217},
doi = {10.1093/BIB/BBAB217},
timestamp = {Wed, 15 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/Huang021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HuangCYHWH21,
author = {Yu{-}An Huang and
Keith C. C. Chan and
Zhu{-}Hong You and
Pengwei Hu and
Lei Wang and
Zhi{-}An Huang},
title = {Predicting microRNA-disease associations from lncRNA-microRNA interactions
via Multiview Multitask Learning},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa133},
doi = {10.1093/BIB/BBAA133},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/HuangCYHWH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HuangCZCL21,
author = {Yanhong Huang and
Xiao Chang and
Yu Zhang and
Luonan Chen and
Xiaoping Liu},
title = {Disease characterization using a partial correlation-based sample-specific
network},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa062},
doi = {10.1093/BIB/BBAA062},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/HuangCZCL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HuangCZZC21,
author = {Jie Huang and
Jiazhou Chen and
Bin Zhang and
Lei Zhu and
Hongmin Cai},
title = {Evaluation of gene-drug common module identification methods using
pharmacogenomics data},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa087},
doi = {10.1093/BIB/BBAA087},
timestamp = {Wed, 22 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/HuangCZZC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HuangHWB21,
author = {Shien Huang and
Xinyu He and
Guohua Wang and
Ergude Bao},
title = {AlignGraph2: similar genome-assisted reassembly pipeline for PacBio
long reads},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab022},
doi = {10.1093/BIB/BBAB022},
timestamp = {Wed, 22 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/HuangHWB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HuangHYWY21,
author = {Lihong Huang and
Bin Hong and
Wenxian Yang and
Liansheng Wang and
Rongshan Yu},
title = {Snipe: highly sensitive pathogen detection from metagenomic sequencing
data},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab064},
doi = {10.1093/BIB/BBAB064},
timestamp = {Wed, 22 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/HuangHYWY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HuangPZKXKN21,
author = {Jie Huang and
Stefano Pallotti and
Qianling Zhou and
Marcus Kleber and
Xiaomeng Xin and
Daniel A. King and
Valerio Napolioni},
title = {{PERHAPS:} Paired-End short Reads-based HAPlotyping from next-generation
Sequencing data},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa320},
doi = {10.1093/BIB/BBAA320},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/HuangPZKXKN21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HuangQZLYZ0W21,
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Yulong Qiao and
Yu Zhao and
Yuying Li and
Jie Yuan and
Jiajian Zhou and
Hao Sun and
Huating Wang},
title = {Large scale RNA-binding proteins/LncRNAs interaction analysis to uncover
lncRNA nuclear localization mechanisms},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab195},
doi = {10.1093/BIB/BBAB195},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/HuangQZLYZ0W21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HuangSWCLCC21,
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Dan Shao and
Yan Wang and
Xueteng Cui and
Yufei Li and
Qian Chen and
Juan Cui},
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prediction},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {315--333},
year = {2021},
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doi = {10.1093/BIB/BBZ160},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/HuangSWCLCC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HuangWLHHHLCZHW21,
author = {Dan Huang and
Xiansong Wang and
Yingzhi Liu and
Ziheng Huang and
Xiaoxu Hu and
Wei Hu and
Qing Li and
Hung Chan and
Yidan Zou and
Idy H. T. Ho and
Yan Wang and
Alfred S. L. Cheng and
Wei Kang and
Ka F. To and
Maggie H. T. Wang and
Sunny Hei Wong and
Jun Yu and
Tony Gin and
Qingpeng Zhang and
Zheng Li and
Jianxiong Shen and
Lin Zhang and
Matthew Tak Vai Chan and
Xiaodong Liu and
William Ka Kei Wu},
title = {Multi-omic analysis suggests tumor suppressor genes evolved specific
promoter features to optimize cancer resistance},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab040},
doi = {10.1093/BIB/BBAB040},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/HuangWLHHHLCZHW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HuangWTY21,
author = {Yu{-}Xi Huang and
Wen{-}Xiao Wang and
Yu{-}Ping Tang and
Shi{-}Jun Yue},
title = {Drug repurposing for {COVID-19:} could vitamin {C} combined with glycyrrhizic
acid be at play by the findings of Li et al.'s database-based network
pharmacology analysis?},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1508--1510},
year = {2021},
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doi = {10.1093/BIB/BBAA330},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/HuangWTY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HuangWZLXCXJLJ21,
author = {Yan Huang and
Pingping Wang and
Wenyang Zhou and
Meng Luo and
Zhaochun Xu and
Rui Cheng and
Chang Xu and
Xiyun Jin and
Yiqun Li and
Qinghua Jiang},
title = {Comprehensive analysis of partial methylation domains in colorectal
cancer based on single-cell methylation profiles},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
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timestamp = {Fri, 19 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/HuangWZLXCXJLJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HuangYXYLZ21,
author = {Feng Huang and
Xiang Yue and
Zhankun Xiong and
Zhouxin Yu and
Shichao Liu and
Wen Zhang},
title = {Tensor decomposition with relational constraints for predicting multiple
types of microRNA-disease associations},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
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timestamp = {Fri, 01 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/HuangYXYLZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HufskyLAAABBBBC21,
author = {Franziska Hufsky and
Kevin Lamkiewicz and
Alexandre Almeida and
Abdel Aouacheria and
Cecilia N. Arighi and
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Jan Baumbach and
Niko Beerenwinkel and
Christian Brandt and
Marco Cacciabue and
Sara Chuguransky and
Oliver Drechsel and
Robert D. Finn and
Adrian Fritz and
Stephan Fuchs and
Georges Hattab and
Anne{-}Christin Hauschild and
Dominik Heider and
Marie Hoffmann and
Martin H{\"{o}}lzer and
Stefan Hoops and
Lars Kaderali and
Ioanna Kalvari and
Max von Kleist and
Ren{\'{o}} Kmiecinski and
Denise K{\"{u}}hnert and
Gorka Lasso and
Pieter Libin and
Markus List and
Hannah F. L{\"{o}}chel and
Maria Jesus Martin and
Roman Martin and
Julian O. Matschinske and
Alice C. McHardy and
Pedro Mendes and
Jaina Mistry and
Vincent Navratil and
Eric P. Nawrocki and
{\'{A}}ine Niamh O'toole and
Nancy Ontiveros{-}Palacios and
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Nicole Redaschi and
Susanne Reimering and
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David L. Robertson and
Sepideh Sadegh and
Joshua B. Singer and
Kristof Theys and
Chris Upton and
Marius Welzel and
Lowri Williams and
Manja Marz},
title = {Computational strategies to combat {COVID-19:} useful tools to accelerate
SARS-CoV-2 and coronavirus research},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {642--663},
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doi = {10.1093/BIB/BBAA232},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/HufskyLAAABBBBC21.bib},
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}
@article{DBLP:journals/bib/HuoLCYHL21,
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Jiao Jiao Li and
Ling Chen and
Zuguo Yu and
Gyorgy Hutvagner and
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data analysis issues and prospects},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab229},
doi = {10.1093/BIB/BBAB229},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/HuoLCYHL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/IbtehazAARAB21,
author = {Nabil Ibtehaz and
Ishtiaque Ahmed and
Md. Sabbir Ahmed and
M. Sohel Rahman and
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Md. Shamsuzzoha Bayzid},
title = {{SSG-LUGIA:} Single Sequence based Genome Level Unsupervised Genomic
Island Prediction Algorithm},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab116},
doi = {10.1093/BIB/BBAB116},
timestamp = {Fri, 05 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/IbtehazAARAB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/IqbalLAAWS21,
author = {Shahid Iqbal and
Fuyi Li and
Tatsuya Akutsu and
David B. Ascher and
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Jiangning Song},
title = {Assessing the performance of computational predictors for estimating
protein stability changes upon missense mutations},
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volume = {22},
number = {6},
year = {2021},
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doi = {10.1093/BIB/BBAB184},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/IqbalLAAWS21.bib},
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}
@article{DBLP:journals/bib/IslamMUTH21,
author = {Salequl Islam and
Mohammad Ali Moni and
Umme Laila Urmi and
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title = {{C-C} Chemokine receptor-like 2 {(CCRL2)} acts as coreceptor for human
immunodeficiency virus-2},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
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timestamp = {Thu, 21 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/IslamMUTH21.bib},
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author = {Rashedul Islam and
Rajan Saha Raju and
Nazia Tasnim and
Istiak Hossain Shihab and
Maruf Ahmed Bhuiyan and
Yusha Araf and
Tofazzal Islam},
title = {Choice of assemblers has a critical impact on de novo assembly of
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journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
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timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/IslamRTSBAI21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/JiHZZMW21,
author = {Beihong Ji and
Xibing He and
Jingchen Zhai and
Yuzhao Zhang and
Viet Hoang Man and
Junmei Wang},
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improve binding affinity prediction},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab054},
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timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/JiHZZMW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/JiJTKLZ21,
author = {Danyang Ji and
Mario Juhas and
Chi Man Tsang and
Chun Kit Kwok and
Yongshu Li and
Yang Zhang},
title = {Discovery of G-quadruplex-forming sequences in SARS-CoV-2},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1150--1160},
year = {2021},
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doi = {10.1093/BIB/BBAA114},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/JiJTKLZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/JiaMFDZ21,
author = {Peilin Jia and
Astrid Marilyn Manuel and
Brisa S. Fernandes and
Yulin Dai and
Zhongming Zhao},
title = {Distinct effect of prenatal and postnatal brain expression across
20 brain disorders and anthropometric social traits: a systematic
study of spatiotemporal modularity},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab214},
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timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/JiaMFDZ21.bib},
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}
@article{DBLP:journals/bib/JiaX021,
author = {Wenlong Jia and
Chang Xu and
Shuai Cheng Li},
title = {Resolving complex structures at oncovirus integration loci with conjugate
graph},
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volume = {22},
number = {6},
year = {2021},
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timestamp = {Wed, 15 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/JiaX021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/JiaXW21,
author = {Anqiang Jia and
Ling Xu and
Yi Wang},
title = {Venn diagrams in bioinformatics},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab108},
doi = {10.1093/BIB/BBAB108},
timestamp = {Fri, 24 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/JiaXW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/JiangCYGYYK21,
author = {Jianjun Jiang and
Lehua Cheng and
Liang Yan and
Mingxia Ge and
Liqin Yang and
Haoqiang Ying and
Qingpeng Kong},
title = {Decoding the role of long noncoding RNAs in the healthy aging of centenarians},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa439},
doi = {10.1093/BIB/BBAA439},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/JiangCYGYYK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/JiangGYHDZE21,
author = {Limin Jiang and
Yan Guo and
Hui Yu and
Kendal Hoff and
Xun Ding and
Wei Zhou and
Jeremy Edwards},
title = {Detecting SARS-CoV-2 and its variant strains with a full genome tiling
array},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab213},
doi = {10.1093/BIB/BBAB213},
timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/JiangGYHDZE21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/JiangLHDHSWTXLC21,
author = {Shuai Jiang and
Hao Li and
Hao Hong and
Guifang Du and
Xin Huang and
Yu Sun and
Junting Wang and
Huan Tao and
Kang Xu and
Cheng Li and
Yang Chen and
Hebing Chen and
Xiaochen Bo},
title = {Spatial density of open chromatin: an effective metric for the functional
characterization of topologically associated domains},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa210},
doi = {10.1093/BIB/BBAA210},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/JiangLHDHSWTXLC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/JiangXY021,
author = {Zhenla Jiang and
Jianrong Xu and
Aixia Yan and
Ling Wang},
title = {A comprehensive comparative assessment of 3D molecular similarity
tools in ligand-based virtual screening},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab231},
doi = {10.1093/BIB/BBAB231},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/JiangXY021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/JiangYLTGG21,
author = {Limin Jiang and
Hui Yu and
Jiawei Li and
Jijun Tang and
Yan Guo and
Fei Guo},
title = {Predicting {MHC} class {I} binder: existing approaches and a novel
recurrent neural network solution},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab216},
doi = {10.1093/BIB/BBAB216},
timestamp = {Tue, 12 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/JiangYLTGG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/JiangZLWCCML0JW21,
author = {Mingming Jiang and
Bowen Zhao and
Shenggan Luo and
Qiankun Wang and
Yanyi Chu and
Tianhang Chen and
Xueying Mao and
Yatong Liu and
Yanjing Wang and
Xue Jiang and
Dong{-}Qing Wei and
Yi Xiong},
title = {NeuroPpred-Fuse: an interpretable stacking model for prediction of
neuropeptides by fusing sequence information and feature selection
methods},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab310},
doi = {10.1093/BIB/BBAB310},
timestamp = {Wed, 15 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/JiangZLWCCML0JW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/JinLL21,
author = {Xiaopeng Jin and
Qing Liao and
Bin Liu},
title = {PL-search: a profile-link-based search method for protein remote homology
detection},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa051},
doi = {10.1093/BIB/BBAA051},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/JinLL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/JinWDHHS21,
author = {Yin Jin and
Zheng Wang and
An{-}Yu Dong and
Yuan{-}Qin Huang and
Ge{-}Fei Hao and
Bao{-}An Song},
title = {Web repositories of natural agents promote pests and pathogenic microbes
management},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab205},
doi = {10.1093/BIB/BBAB205},
timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/JinWDHHS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/JinZLWXMCXHCXLP21,
author = {Xiyun Jin and
Wenyang Zhou and
Meng Luo and
Pingping Wang and
Zhaochun Xu and
Kexin Ma and
Huimin Cao and
Chang Xu and
Yan Huang and
Rui Cheng and
Lixing Xiao and
Xiaoyu Lin and
Fenglan Pang and
Yiqun Li and
Huan Nie and
Qinghua Jiang},
title = {Global characterization of {B} cell receptor repertoire in {COVID-19}
patients by single-cell {V(D)J} sequencing},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab192},
doi = {10.1093/BIB/BBAB192},
timestamp = {Fri, 19 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/JinZLWXMCXHCXLP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/JinZXHL21,
author = {Shuting Jin and
Xiangxiang Zeng and
Feng Xia and
Wei Huang and
Xiangrong Liu},
title = {Application of deep learning methods in biological networks},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1902--1917},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa043},
doi = {10.1093/BIB/BBAA043},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/JinZXHL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/JingDH21,
author = {Ying Jing and
Lixia Diao and
Leng Han},
title = {Adverse events associated with potential drugs for {COVID-19:} a case
study from real-world data},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1232--1238},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa234},
doi = {10.1093/BIB/BBAA234},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/JingDH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/JungSS21,
author = {Sascha Jung and
Kartikeya Singh and
Antonio del Sol},
title = {FunRes: resolving tissue-specific functional cell states based on
a cell-cell communication network model},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa283},
doi = {10.1093/BIB/BBAA283},
timestamp = {Wed, 01 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/JungSS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/JungSS21a,
author = {Sascha Jung and
Kartikeya Singh and
Antonio del Sol},
title = {Corrigendum to: FunRes: resolving tissue-specific functional cell
states based on a cell-cell communication network model},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab018},
doi = {10.1093/BIB/BBAB018},
timestamp = {Wed, 22 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/JungSS21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/KarimBZCRCD21,
author = {Md. Rezaul Karim and
Oya Beyan and
Achille Zappa and
Ivan G. Costa and
Dietrich Rebholz{-}Schuhmann and
Michael Cochez and
Stefan Decker},
title = {Deep learning-based clustering approaches for bioinformatics},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {393--415},
year = {2021},
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network to identify {DNA} enhancers from sequence information},
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title = {Computational prediction and interpretation of both general and specific
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volume = {22},
number = {6},
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volume = {22},
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author = {Yin Li and
Jie Gu and
Fengkai Xu and
Qiaoliang Zhu and
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title = {Molecular characterization, biological function, tumor microenvironment
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volume = {22},
number = {4},
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Ning Zhang and
Deyu Long and
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Luyu Yang and
Xinyue Bai and
Qun Li and
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Dongxue Che and
Leijie Li and
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title = {FifBase: a comprehensive fertility-associated indicators factor database
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volume = {22},
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doi = {10.1093/BIB/BBAA432},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiHCZNLXZZLLYBL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiHLSLC21,
author = {Rong Li and
Xue Huang and
Xiao Liang and
Min Su and
Keng Po Lai and
Jian Chen},
title = {Integrated omics analysis reveals the alteration of gut microbe-metabolites
in obese adults},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa165},
doi = {10.1093/BIB/BBAA165},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiHLSLC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiIPNS21,
author = {Guangyuan Li and
Balaji Iyer and
V. B. Surya Prasath and
Yizhao Ni and
Nathan Salomonis},
title = {DeepImmuno: deep learning-empowered prediction and generation of immunogenic
peptides for T-cell immunity},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab160},
doi = {10.1093/BIB/BBAB160},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiIPNS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiJTDG21,
author = {Jing{-}Yi Li and
Shen Jin and
Xin{-}Ming Tu and
Yang Ding and
Ge Gao},
title = {Identifying complex motifs in massive omics data with a variable-convolutional
layer in deep neural network},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab233},
doi = {10.1093/BIB/BBAB233},
timestamp = {Wed, 15 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiJTDG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiLCWAASTFL21,
author = {Shasha Li and
Wenli Liu and
Yangzhen Chen and
Liqin Wang and
Wenlin An and
Xiaoping An and
Lihua Song and
Yigang Tong and
Huahao Fan and
Chenyang Lu},
title = {Transcriptome analysis of cepharanthine against a SARS-CoV-2-related
coronavirus},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1378--1386},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa387},
doi = {10.1093/BIB/BBAA387},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiLCWAASTFL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiLHZLLSY21,
author = {Pengyong Li and
Yuquan Li and
Chang{-}Yu Hsieh and
Shengyu Zhang and
Xianggen Liu and
Huanxiang Liu and
Sen Song and
Xiaojun Yao},
title = {TrimNet: learning molecular representation from triplet messages for
biomedicine},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa266},
doi = {10.1093/BIB/BBAA266},
timestamp = {Thu, 01 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiLHZLLSY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiLLYSL21,
author = {Rong Li and
Yu Li and
Xiao Liang and
Lu Yang and
Min Su and
Keng Po Lai},
title = {Network Pharmacology and bioinformatics analyses identify intersection
genes of niacin and {COVID-19} as potential therapeutic targets},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1279--1290},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa300},
doi = {10.1093/BIB/BBAA300},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiLLYSL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiLNYB21,
author = {Zhengwei Li and
Jiashu Li and
Ru Nie and
Zhu{-}Hong You and
Wenzheng Bao},
title = {A graph auto-encoder model for miRNA-disease associations prediction},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa240},
doi = {10.1093/BIB/BBAA240},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiLNYB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiLSSCL21,
author = {Hongjian Li and
Gang Lu and
Kam{-}Heung Sze and
Xianwei Su and
Wai{-}Yee Chan and
Kwong{-}Sak Leung},
title = {Machine-learning scoring functions trained on complexes dissimilar
to the test set already outperform classical counterparts on a blind
benchmark},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab225},
doi = {10.1093/BIB/BBAB225},
timestamp = {Wed, 15 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiLSSCL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiLSTRLFCJLZCW21,
author = {Zheng Li and
Xingye Li and
Jianxiong Shen and
Haining Tan and
Tianhua Rong and
Youxi Lin and
Erwei Feng and
Zhengguang Chen and
Yang Jiao and
Gang Liu and
Lin Zhang and
Matthew Tak Vai Chan and
William Ka Kei Wu},
title = {Bioinformatic analysis of {SMN1-ACE/ACE2} interactions hinted at a
potential protective effect of spinal muscular atrophy against COVID-19-induced
lung injury},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1291--1296},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa285},
doi = {10.1093/BIB/BBAA285},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiLSTRLFCJLZCW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiLWZW21,
author = {Xiangtao Li and
Shaochuan Li and
Yunhe Wang and
Shixiong Zhang and
Ka{-}Chun Wong},
title = {Identification of pan-cancer Ras pathway activation with deep learning},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa258},
doi = {10.1093/BIB/BBAA258},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiLWZW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiLYLQTZZBJZZZX21,
author = {Yanyu Li and
Xuecang Li and
Yongsan Yang and
Meng Li and
Fengcui Qian and
Zhidong Tang and
Jianmei Zhao and
Jian Zhang and
Xuefeng Bai and
Yong Jiang and
Jianyuan Zhou and
Yuexin Zhang and
Liwei Zhou and
Jianjun Xie and
Enmin Li and
Qiuyu Wang and
Chunquan Li},
title = {TRlnc: a comprehensive database for human transcriptional regulatory
information of lncRNAs},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1929--1939},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa011},
doi = {10.1093/BIB/BBAA011},
timestamp = {Fri, 19 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiLYLQTZZBJZZZX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiPTZG21,
author = {Jiawei Li and
Yuqian Pu and
Jijun Tang and
Quan Zou and
Fei Guo},
title = {DeepATT: a hybrid category attention neural network for identifying
functional effects of {DNA} sequences},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa159},
doi = {10.1093/BIB/BBAA159},
timestamp = {Tue, 12 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiPTZG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiSPDZZAJZL21,
author = {Yumei Li and
Qing Sunny Shen and
Qi Peng and
Wanqiu Ding and
Jie Zhang and
Xiaoming Zhong and
Ni A. An and
Mingjun Ji and
Wei{-}Zhen Zhou and
Chuan{-}Yun Li},
title = {Polyadenylation-related isoform switching in human evolution revealed
by full-length transcript structure},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab157},
doi = {10.1093/BIB/BBAB157},
timestamp = {Mon, 31 Oct 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiSPDZZAJZL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiWCQCZWWXYLFZH21,
author = {Ruidong Li and
Shibo Wang and
Yanru Cui and
Han Qu and
John M. Chater and
Le Zhang and
Julong Wei and
Meiyue Wang and
Yang Xu and
Lei Yu and
Jianming Lu and
Yuanfa Feng and
Rui Zhou and
Yuhan Huang and
Renyuan Ma and
Jianguo Zhu and
Wei{-}De Zhong and
Zhenyu Jia},
title = {Extended application of genomic selection to screen multiomics data
for prognostic signatures of prostate cancer},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa197},
doi = {10.1093/BIB/BBAA197},
timestamp = {Wed, 31 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiWCQCZWWXYLFZH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiWGZ21,
author = {Jing Li and
Leyi Wei and
Fei Guo and
Quan Zou},
title = {{EP3:} an ensemble predictor that accurately identifies type {III}
secreted effectors},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1918--1928},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa008},
doi = {10.1093/BIB/BBAA008},
timestamp = {Tue, 12 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiWGZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiWLLLC21,
author = {Rong Li and
Ka Wu and
Yu Li and
Xiao Liang and
Keng Po Lai and
Jian Chen},
title = {Integrative pharmacological mechanism of vitamin {C} combined with
glycyrrhizic acid against {COVID-19:} findings of bioinformatics analyses},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1161--1174},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa141},
doi = {10.1093/BIB/BBAA141},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiWLLLC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiWNYZ21,
author = {Chunyan Li and
Jianmin Wang and
Zhangming Niu and
Junfeng Yao and
Xiangxiang Zeng},
title = {A spatial-temporal gated attention module for molecular property prediction
based on molecular geometry},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab078},
doi = {10.1093/BIB/BBAB078},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiWNYZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiWQCYYGXS21,
author = {Pengyong Li and
Jun Wang and
Yixuan Qiao and
Hao Chen and
Yihuan Yu and
Xiaojun Yao and
Peng Gao and
Guotong Xie and
Sen Song},
title = {An effective self-supervised framework for learning expressive molecular
global representations to drug discovery},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab109},
doi = {10.1093/BIB/BBAB109},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiWQCYYGXS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiWZZWZXLW21,
author = {Jiaqi Li and
Lei Wei and
Xianglin Zhang and
Wei Zhang and
Haochen Wang and
Bixi Zhong and
Zhen Xie and
Hairong Lv and
Xiaowo Wang},
title = {{DISMIR:} Deep learning-based noninvasive cancer detection by integrating
{DNA} sequence and methylation information of individual cell-free
{DNA} reads},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab250},
doi = {10.1093/BIB/BBAB250},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiWZZWZXLW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiZ21,
author = {Yan Li and
Shao{-}Wu Zhang},
title = {Resilience function uncovers the critical transitions in cancer initiation},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab175},
doi = {10.1093/BIB/BBAB175},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiZHGZ21,
author = {Jing Li and
Lichao Zhang and
Shida He and
Fei Guo and
Quan Zou},
title = {SubLocEP: a novel ensemble predictor of subcellular localization of
eukaryotic mRNA based on machine learning},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa401},
doi = {10.1093/BIB/BBAA401},
timestamp = {Tue, 12 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiZHGZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiZLWHMD21,
author = {Ying Li and
Qi Zhang and
Zhaoqian Liu and
Cankun Wang and
Siyu Han and
Qin Ma and
Wei Du},
title = {Deep forest ensemble learning for classification of alignments of
non-coding {RNA} sequences based on multi-view structure representations},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa354},
doi = {10.1093/BIB/BBAA354},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiZLWHMD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiZW21,
author = {Xiangtao Li and
Shixiong Zhang and
Ka{-}Chun Wong},
title = {Deep embedded clustering with multiple objectives on scRNA-seq data},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab090},
doi = {10.1093/BIB/BBAB090},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiZW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LianYYZ21,
author = {Xianyi Lian and
Xiaodi Yang and
Shiping Yang and
Ziding Zhang},
title = {Current status and future perspectives of computational studies on
human-virus protein-protein interactions},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab029},
doi = {10.1093/BIB/BBAB029},
timestamp = {Tue, 05 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LianYYZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiangCYJHWFX21,
author = {Tianjian Liang and
Hui Chen and
Jiayi Yuan and
Chen Jiang and
Yixuan Hao and
Yuanqiang Wang and
Zhiwei Feng and
Xiang{-}Qun Xie},
title = {IsAb: a computational protocol for antibody design},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab143},
doi = {10.1093/BIB/BBAB143},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiangCYJHWFX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiangLCLWLSL21,
author = {Xiao Liang and
Fuyi Li and
Jinxiang Chen and
Junlong Li and
Hao Wu and
Shuqin Li and
Jiangning Song and
Quanzhong Liu},
title = {Large-scale comparative review and assessment of computational methods
for anti-cancer peptide identification},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa312},
doi = {10.1093/BIB/BBAA312},
timestamp = {Tue, 09 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiangLCLWLSL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiangZLYYZ21,
author = {Pengfei Liang and
Lei Zheng and
Chunshen Long and
Wuritu Yang and
Lei Yang and
Yongchun Zuo},
title = {HelPredictor models single-cell transcriptome to predict human embryo
lineage allocation},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab196},
doi = {10.1093/BIB/BBAB196},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiangZLYYZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiangZYLLWCTS21,
author = {Jialong Liang and
Kun Zhang and
Jie Yang and
Xianfeng Li and
Qinglan Li and
Yan Wang and
Wanshi Cai and
Huajing Teng and
Zhongsheng Sun},
title = {A new approach to decode {DNA} methylome and genomic variants simultaneously
from double strand bisulfite sequencing},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab201},
doi = {10.1093/BIB/BBAB201},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiangZYLLWCTS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LinWZSRTYPX21,
author = {Shaofeng Lin and
Chenwei Wang and
Jiaqi Zhou and
Ying Shi and
Chen Ruan and
Yiran Tu and
Lan Yao and
Di Peng and
Yu Xue},
title = {{EPSD:} a well-annotated data resource of protein phosphorylation
sites in eukaryotes},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {298--307},
year = {2021},
url = {https://doi.org/10.1093/bib/bbz169},
doi = {10.1093/BIB/BBZ169},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LinWZSRTYPX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuCFYCCYTZZDHH21,
author = {Xuan Liu and
Wenbo Chen and
Yu Fang and
Siqi Yang and
Liuping Chang and
Xingyu Chen and
Haidong Ye and
Xinyu Tang and
Shan Zhong and
Wen Zhang and
Zhiqiang Dong and
Leng Han and
Chunjiang He},
title = {{ADEIP:} an integrated platform of age-dependent expression and immune
profiles across human tissues},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab274},
doi = {10.1093/BIB/BBAB274},
timestamp = {Fri, 06 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiuCFYCCYTZZDHH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuCWLJSL21,
author = {Quanzhong Liu and
Jinxiang Chen and
Yanze Wang and
Shuqin Li and
Cangzhi Jia and
Jiangning Song and
Fuyi Li},
title = {DeepTorrent: a deep learning-based approach for predicting {DNA} N4-methylcytosine
sites},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa124},
doi = {10.1093/BIB/BBAA124},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiuCWLJSL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuD21,
author = {Mingyi Liu and
Ashok Dongre},
title = {Proper imputation of missing values in proteomics datasets for differential
expression analysis},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa112},
doi = {10.1093/BIB/BBAA112},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiuD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuDLGCS21,
author = {Qi Liu and
Changjun Ding and
Xiaoqiang Lang and
Ganggang Guo and
Jiafei Chen and
Xiaohua Su},
title = {Small noncoding {RNA} discovery and profiling with sRNAtools based
on high-throughput sequencing},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {463--473},
year = {2021},
url = {https://doi.org/10.1093/bib/bbz151},
doi = {10.1093/BIB/BBZ151},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiuDLGCS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuFLLQW21,
author = {Lu Liu and
Xikang Feng and
Haimei Li and
Shuai Cheng Li and
Qiujin Qian and
Yufeng Wang},
title = {Deep learning model reveals potential risk genes for ADHD, especially
Ephrin receptor gene {EPHA5}},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab207},
doi = {10.1093/BIB/BBAB207},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiuFLLQW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuFWX21,
author = {Xiang Liu and
Huitao Feng and
Jie Wu and
Kelin Xia},
title = {Persistent spectral hypergraph based machine learning {(PSH-ML)} for
protein-ligand binding affinity prediction},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab127},
doi = {10.1093/BIB/BBAB127},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiuFWX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuFYML21,
author = {Zhaoqian Liu and
Jingtong Feng and
Bin Yu and
Qin Ma and
Bingqiang Liu},
title = {The functional determinants in the organization of bacterial genomes},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa172},
doi = {10.1093/BIB/BBAA172},
timestamp = {Wed, 22 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiuFYML21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuGFCSWLWC21,
author = {Yan Liu and
Yuzhao Gao and
Ruiling Fang and
Hongyan Cao and
Jian Sa and
Jianrong Wang and
Hongqi Liu and
Tong Wang and
Yuehua Cui},
title = {Identifying complex gene-gene interactions: a mixed kernel omnibus
testing approach},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab305},
doi = {10.1093/BIB/BBAB305},
timestamp = {Tue, 04 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiuGFCSWLWC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuGLWG21,
author = {Yang Liu and
Yuchen Guo and
Xiaoyan Liu and
Chunyu Wang and
Maozu Guo},
title = {Pathogenic gene prediction based on network embedding},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa353},
doi = {10.1093/BIB/BBAA353},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiuGLWG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuGPWIGBC21,
author = {Xuan Liu and
Sara J. C. Gosline and
Lance T. Pflieger and
Pierre Wallet and
Archana Iyer and
Justin Guinney and
Andrea H. Bild and
Jeffrey T. Chang},
title = {Knowledge-based classification of fine-grained immune cell types in
single-cell RNA-Seq data},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab039},
doi = {10.1093/BIB/BBAB039},
timestamp = {Tue, 02 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiuGPWIGBC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuHWW21,
author = {Yongzhuang Liu and
Yalin Huang and
Guohua Wang and
Yadong Wang},
title = {A deep learning approach for filtering structural variants in short
read sequencing data},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa370},
doi = {10.1093/BIB/BBAA370},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiuHWW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuHXJYSC21,
author = {Yang Liu and
Hongxia He and
Zhi{-}Xiong Xiao and
Anquan Ji and
Jian Ye and
Qifan Sun and
Yang Cao},
title = {A systematic analysis of miRNA markers and classification algorithms
for forensic body fluid identification},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa324},
doi = {10.1093/BIB/BBAA324},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiuHXJYSC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuHZZSSY21,
author = {Yan Liu and
Ke Han and
Yi{-}Heng Zhu and
Ying Zhang and
Long{-}Chen Shen and
Jiangning Song and
Dong{-}Jun Yu},
title = {Improving protein fold recognition using triplet network and ensemble
deep learning},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab248},
doi = {10.1093/BIB/BBAB248},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiuHZZSSY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuLG21,
author = {Hua{-}Ping Liu and
Hung{-}Ming Lai and
Zheng Guo},
title = {Prostate cancer early diagnosis: circulating microRNA pairs potentially
beyond single microRNAs upon 1231 serum samples},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa111},
doi = {10.1093/BIB/BBAA111},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiuLG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuMMMML21,
author = {Zhaoqian Liu and
Anjun Ma and
Ewy A Math{\'{e}} and
Marlena Merling and
Qin Ma and
Bingqiang Liu},
title = {Network analyses in microbiome based on high-throughput multi-omics
data},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1639--1655},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa005},
doi = {10.1093/BIB/BBAA005},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiuMMMML21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuSHG21,
author = {Fei Liu and
Wujie Sun and
Monika Heiner and
David R. Gilbert},
title = {Hybrid modelling of biological systems using fuzzy continuous Petri
nets},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {438--450},
year = {2021},
url = {https://doi.org/10.1093/bib/bbz114},
doi = {10.1093/BIB/BBZ114},
timestamp = {Fri, 19 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiuSHG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuSZW21,
author = {Jin Liu and
Ran Su and
Jiahang Zhang and
Leyi Wei},
title = {Classification and gene selection of triple-negative breast cancer
subtype embedding gene connectivity matrix in deep neural network},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa395},
doi = {10.1093/BIB/BBAA395},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiuSZW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuWL21,
author = {Yumeng Liu and
Xiaolong Wang and
Bin Liu},
title = {{RFPR-IDP:} reduce the false positive rates for intrinsically disordered
protein and region prediction by incorporating both fully ordered
proteins and disordered proteins},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {2000--2011},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa018},
doi = {10.1093/BIB/BBAA018},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiuWL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuWW21,
author = {Yongzhuang Liu and
Xiaoliang Wu and
Yadong Wang},
title = {An integrated approach for copy number variation discovery in parent-offspring
trios},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab230},
doi = {10.1093/BIB/BBAB230},
timestamp = {Wed, 15 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiuWW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuWWX21,
author = {Xiang Liu and
Xiangjun Wang and
Jie Wu and
Kelin Xia},
title = {Hypergraph-based persistent cohomology {(HPC)} for molecular representations
in drug design},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa411},
doi = {10.1093/BIB/BBAA411},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiuWWX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuXWLWLLC21,
author = {Xueyan Liu and
Yong Xu and
Ran Wang and
Sheng Liu and
Jun Wang and
Yonglun Luo and
Kwong{-}Sak Leung and
Lixin Cheng},
title = {A network-based algorithm for the identification of moonlighting noncoding
RNAs and its application in sepsis},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {581--588},
year = {2021},
url = {https://doi.org/10.1093/bib/bbz154},
doi = {10.1093/BIB/BBZ154},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiuXWLWLLC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuYLLW21,
author = {Hongchao Liu and
Huihui Yin and
Guangyu Li and
Junling Li and
Xiaoyue Wang},
title = {Aperture: alignment-free detection of structural variations and viral
integrations in circulating tumor {DNA}},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab290},
doi = {10.1093/BIB/BBAB290},
timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiuYLLW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuZSSY21,
author = {Yan Liu and
Yi{-}Heng Zhu and
Xiaoning Song and
Jiangning Song and
Dong{-}Jun Yu},
title = {Why can deep convolutional neural networks improve protein fold recognition?
{A} visual explanation by interpretation},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab001},
doi = {10.1093/BIB/BBAB001},
timestamp = {Tue, 05 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiuZSSY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuZSZ21,
author = {Shuhui Liu and
Yupei Zhang and
Xuequn Shang and
Zhaolei Zhang},
title = {ProTICS reveals prognostic impact of tumor infiltrating immune cells
in different molecular subtypes},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab164},
doi = {10.1093/BIB/BBAB164},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiuZSZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LivezeyG21,
author = {Jesse A. Livezey and
Joshua I. Glaser},
title = {Deep learning approaches for neural decoding across architectures
and recording modalities},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1577--1591},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa355},
doi = {10.1093/BIB/BBAA355},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LivezeyG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LoaizaDLK21,
author = {Cristian D. Loaiza and
Naveen Duhan and
Matthew Lister and
Rakesh Kaundal},
title = {In silico prediction of host-pathogen protein interactions in melioidosis
pathogen Burkholderia pseudomallei and human reveals novel virulence
factors and their targets},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbz162},
doi = {10.1093/BIB/BBZ162},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LoaizaDLK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LongHBMWLYWLBYS21,
author = {Junyu Long and
Shan Huang and
Yi Bai and
Jinzhu Mao and
Anqiang Wang and
Yu Lin and
Xu Yang and
Dongxu Wang and
Jianzhen Lin and
Jin Bian and
Xiaobo Yang and
Xinting Sang and
Xi Wang and
Haitao Zhao},
title = {Transcriptional landscape of cholangiocarcinoma revealed by weighted
gene coexpression network analysis},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa224},
doi = {10.1093/BIB/BBAA224},
timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LongHBMWLYWLBYS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LongLZX21,
author = {Yahui Long and
Jiawei Luo and
Yu Zhang and
Yan Xia},
title = {Predicting human microbe-disease associations via graph attention
networks with inductive matrix completion},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
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doi = {10.1093/BIB/BBAA146},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LongLZX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LuLMLZ21,
author = {Fengqing Lu and
Mufei Li and
Xiaoping Min and
Chunyan Li and
Xiangxiang Zeng},
title = {De novo generation of dual-target ligands using adversarial training
and reinforcement learning},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
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doi = {10.1093/BIB/BBAB333},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
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bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LuWSL21,
author = {Jingzhe Lu and
Xu Wang and
Keyong Sun and
Xun Lan},
title = {Chrom-Lasso: a lasso regression-based model to detect functional interactions
using Hi-C data},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab181},
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timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LuWSL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LuZZWWLC21,
author = {Dandan Lu and
Yue Zhang and
Ling Zhang and
Haiyan Wang and
Wanlin Weng and
Li Li and
Hongmin Cai},
title = {Methods of privacy-preserving genomic sequencing data alignments},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab151},
doi = {10.1093/BIB/BBAB151},
timestamp = {Wed, 10 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LuZZWWLC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LuoGXSMTLNSR21,
author = {Ruihan Luo and
Chuang Ge and
Xiao Xiao and
Jing Song and
Shiqi Miao and
Yongyao Tang and
Jiayi Lai and
Weiqi Nian and
Fangzhou Song and
Longke Ran},
title = {Identification of genetic variations associated with drug resistance
in non-small cell lung cancer patients undergoing systemic treatment},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab187},
doi = {10.1093/BIB/BBAB187},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LuoGXSMTLNSR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LuoLSWF21,
author = {Zhenhua Luo and
Weijin Liu and
Panpan Sun and
Feng Wang and
Xuyang Feng},
title = {Pan-cancer analyses reveal regulation and clinical outcome association
of the shelterin complex in cancer},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa441},
doi = {10.1093/BIB/BBAA441},
timestamp = {Tue, 05 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LuoLSWF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LuoLYWLW21,
author = {Huimin Luo and
Min Li and
Mengyun Yang and
Fang{-}Xiang Wu and
Yaohang Li and
Jianxin Wang},
title = {Biomedical data and computational models for drug repositioning: a
comprehensive review},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1604--1619},
year = {2021},
url = {https://doi.org/10.1093/bib/bbz176},
doi = {10.1093/BIB/BBZ176},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LuoLYWLW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LuoSBL21,
author = {Xiangyu Luo and
Joel Schwartz and
Andrea A. Baccarelli and
Zhonghua Liu},
title = {Testing cell-type-specific mediation effects in genome-wide epigenetic
studies},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa131},
doi = {10.1093/BIB/BBAA131},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LuoSBL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LuoWLWLLY21,
author = {Junwei Luo and
Yawei Wei and
Mengna Lyu and
Zhengjiang Wu and
Xiaoyan Liu and
Huimin Luo and
Chaokun Yan},
title = {A comprehensive review of scaffolding methods in genome assembly},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab033},
doi = {10.1093/BIB/BBAB033},
timestamp = {Tue, 05 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LuoWLWLLY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LvCZZC21,
author = {Qiujie Lv and
Guanxing Chen and
Lu Zhao and
Weihe Zhong and
Calvin Yu{-}Chian Chen},
title = {Mol2Context-vec: learning molecular representation from context awareness
for drug discovery},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab317},
doi = {10.1093/BIB/BBAB317},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LvCZZC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LvCZZX21,
author = {Zhibin Lv and
Feifei Cui and
Quan Zou and
Lichao Zhang and
Lei Xu},
title = {Anticancer peptides prediction with deep representation learning features},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab008},
doi = {10.1093/BIB/BBAB008},
timestamp = {Tue, 05 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LvCZZX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LvDGYLL21,
author = {Hao Lv and
Fu{-}Ying Dao and
Zheng{-}Xing Guan and
Hui Yang and
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number = {4},
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Yang Zhang and
Liming Yang and
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title = {Application of artificial intelligence and machine learning for {COVID-19}
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number = {6},
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Charlotte A. Hobbs and
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number = {6},
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Nicola J. Mulder and
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title = {Reviewing and assessing existing meta-analysis models and tools},
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timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
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number = {2},
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Michele Ceccarelli and
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title = {Network-based identification of key master regulators associated with
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volume = {22},
number = {6},
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Ali Masoudi{-}Nejad},
title = {Structure-based drug repurposing against {COVID-19} and emerging infectious
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Maja Rey and
Christian Quast and
Janine Felden and
Frank Oliver Gl{\"{o}}ckner and
Matthias Lange and
Daniel Arend and
Sebastian Beier and
Astrid Junker and
Uwe Scholz and
Danuta Sch{\"{u}}ler and
Hans A. Kestler and
Daniel Wibberg and
Alfred P{\"{u}}hler and
Sven Twardziok and
J{\"{u}}rgen Eils and
Roland Eils and
Steve Hoffmann and
Martin Eisenacher and
Michael Turewicz},
title = {Implementing {FAIR} data management within the German Network for
Bioinformatics Infrastructure (de.NBI) exemplified by selected use
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volume = {22},
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Funmilayo L. Makinde and
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Nicholas E. Thomford and
Emile R. Chimusa and
Ambroise Wonkam and
Nicola J. Mulder},
title = {{IHP-PING} - generating integrated human protein-protein interaction
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volume = {22},
number = {4},
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number = {5},
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Patricia T. Illing and
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Nathan P. Croft and
Anthony W. Purcell and
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volume = {22},
number = {5},
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timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/MeiWWWHY21,
author = {Long{-}Can Mei and
Yu{-}Liang Wang and
Feng{-}Xu Wu and
Fan Wang and
Ge{-}Fei Hao and
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acid-protein interface with a case study},
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volume = {22},
number = {5},
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timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/MeiWWWHY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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number = {2},
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timestamp = {Thu, 02 Feb 2023 00:00:00 +0100},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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volume = {22},
number = {4},
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timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
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volume = {22},
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timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
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volume = {22},
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Ravi Datta Sharma and
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Raj Kumar Mongre and
Andrew M. Lynn and
Rajendra Prasad and
Raok Jeon and
Amresh Prakash},
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computational approach},
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timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/MishraPSMMLPJP21.bib},
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Joanna Sarzynska and
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volume = {22},
number = {3},
year = {2021},
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timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
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volume = {22},
number = {2},
pages = {1679--1693},
year = {2021},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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Nese Sinmaz and
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volume = {22},
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pages = {1324--1337},
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timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
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@article{DBLP:journals/bib/MorisPPGNBOLM21,
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Joey De Pauw and
Anna Postovskaya and
Sofie Gielis and
Nicolas De Neuter and
Wout Bittremieux and
Benson Ogunjimi and
Kris Laukens and
Pieter Meysman},
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volume = {22},
number = {4},
year = {2021},
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timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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timestamp = {Wed, 14 Apr 2021 01:00:00 +0200},
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timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
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Xin He and
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Brien P. Riley and
Silviu{-}Alin Bacanu},
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volume = {22},
number = {5},
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timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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number = {6},
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timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
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Bang Tran and
Bahadir Pehlivan and
Tin Nguyen},
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volume = {22},
number = {3},
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timestamp = {Thu, 09 Mar 2023 00:00:00 +0100},
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volume = {22},
number = {6},
year = {2021},
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doi = {10.1093/BIB/BBAB257},
timestamp = {Wed, 15 Dec 2021 00:00:00 +0100},
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author = {Anna Niarakis and
Tom{\'{a}}s Helikar},
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volume = {22},
number = {4},
year = {2021},
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timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
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Cristina Casals{-}Casas and
Denis Thieffry and
Tom C. Freeman and
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Eugenia Oshurko and
Ioannis Xenarios and
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Tom{\'{a}}s Helikar and
Laurence Calzone},
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volume = {22},
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timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
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timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
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timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
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volume = {22},
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volume = {22},
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volume = {22},
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Christian Otto and
Peter F. Stadler and
David Langenberger},
title = {Erratum to: Comprehensive benchmarking of software for mapping whole
genome bisulfite data: from read alignment to {DNA} methylation analysis},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
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timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
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volume = {22},
number = {4},
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timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab133},
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timestamp = {Thu, 27 Oct 2022 01:00:00 +0200},
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Gaetan Burgio and
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journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {308--314},
year = {2021},
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timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
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author = {Minsik Oh and
Sungjoon Park and
Sun Kim and
Heejoon Chae},
title = {Erratum to: Machine learning-based analysis of multi-omics data on
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journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {607},
year = {2021},
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timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/OhPKC21a.bib},
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}
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Raymond Tobler and
Alan Cooper and
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journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
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timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
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@article{DBLP:journals/bib/OliveiraBMSD21,
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{\'{I}}gor Bonadio and
Alicia Lie de Melo and
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Alan Mitchell Durham},
title = {TSSFinder - fast and accurate ab initio prediction of the core promoter
in eukaryotic genomes},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab198},
doi = {10.1093/BIB/BBAB198},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
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George M. Spyrou},
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volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab141},
doi = {10.1093/BIB/BBAB141},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/OnisiforouS21.bib},
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@article{DBLP:journals/bib/OrmondRCH21,
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volume = {22},
number = {5},
year = {2021},
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timestamp = {Tue, 05 Oct 2021 01:00:00 +0200},
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@article{DBLP:journals/bib/Ortiz-MahechaAP21,
author = {Carlos A. Ortiz{-}Mahecha and
William A. Agudelo and
Manuel A. Patarroyo and
Manuel{-}Elkin Patarroyo and
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title = {{MHCBI:} a pipeline for calculating peptide-MHC binding energy using
semi-empirical quantum mechanical methods with explicit/implicit solvent
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journal = {Briefings Bioinform.},
volume = {22},
number = {6},
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timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/Ortiz-MahechaAP21.bib},
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@article{DBLP:journals/bib/Ou-YangCZ021,
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Dehan Cai and
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journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
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timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
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@article{DBLP:journals/bib/PadhiKHSTNTYITS21,
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Satoru Nagatoishi and
Kouhei Tsumoto and
Atushi Yamaguchi and
Fumie Iraha and
Mihoko Takahashi and
Kensaku Sakamoto and
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title = {An integrated computational pipeline for designing high-affinity nanobodies
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volume = {22},
number = {6},
year = {2021},
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timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
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journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
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number = {6},
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@article{DBLP:journals/bib/PaltunMK21,
author = {Bet{\"{u}}l G{\"{u}}ven{\c{c}} Paltun and
Hiroshi Mamitsuka and
Samuel Kaski},
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matrix factorization, kernel and network-based approaches},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
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timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
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journal = {Briefings Bioinform.},
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number = {5},
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journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1085--1095},
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timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
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@article{DBLP:journals/bib/PangYJWL21,
author = {Yuxuan Pang and
Lantian Yao and
Jhih{-}Hua Jhong and
Zhuo Wang and
Tzong{-}Yi Lee},
title = {AVPIden: a new scheme for identification and functional prediction
of antiviral peptides based on machine learning approaches},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
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doi = {10.1093/BIB/BBAB263},
timestamp = {Wed, 15 Dec 2021 00:00:00 +0100},
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@article{DBLP:journals/bib/ParkKOK21,
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volume = {22},
number = {4},
year = {2021},
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timestamp = {Wed, 24 Jan 2024 00:00:00 +0100},
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@article{DBLP:journals/bib/PastorLRSR21,
author = {Oscar Pastor and
Ana Palacio Le{\'{o}}n and
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Alberto Garc{\'{\i}}a Sim{\'{o}}n and
Juan Carlos Casamayor R{\'{o}}denas},
title = {Using conceptual modeling to improve genome data management},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {45--54},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa100},
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timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/PastorLRSR21.bib},
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Pia Anneli Sofia Kinaret and
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Dario Greco},
title = {Integrated network analysis reveals new genes suggesting {COVID-19}
chronic effects and treatment},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1430--1441},
year = {2021},
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timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/PavelGFLKSG21.bib},
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@article{DBLP:journals/bib/PeiLRLCX21,
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sequencing analysis},
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volume = {22},
number = {3},
year = {2021},
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doi = {10.1093/BIB/BBAA148},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
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bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/PeiQCWHHHLQFTCL21,
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Shiting He and
Bixia Hong and
Ke Liu and
Renzhong Qiao and
Huahao Fan and
Yigang Tong and
Long Chen and
Shi{-}Zhong Luo},
title = {Corrigendum to: Computational design of ultrashort peptide inhibitors
of the receptor-binding domain of the SARS-CoV-2 {S} protein},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
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timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
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author = {Pengfei Pei and
Hongbo Qin and
Jialin Chen and
Fengli Wang and
Chengzhi He and
Shiting He and
Bixia Hong and
Ke Liu and
Renzhong Qiao and
Huahao Fan and
Yigang Tong and
Long Chen and
Shi{-}Zhong Luo},
title = {Computational design of ultrashort peptide inhibitors of the receptor-binding
domain of the SARS-CoV-2 {S} protein},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab243},
doi = {10.1093/BIB/BBAB243},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/PeiQCWHHHLQFTCL21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/PengLWW21,
author = {Xiaoqing Peng and
Hong{-}Dong Li and
Fang{-}Xiang Wu and
Jianxin Wang},
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a promising way in noninvasive diagnostics},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa060},
doi = {10.1093/BIB/BBAA060},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
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bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/PengWGLHHWS21,
author = {Jiajie Peng and
Yuxian Wang and
Jiaojiao Guan and
Jingyi Li and
Ruijiang Han and
Jianye Hao and
Zhongyu Wei and
Xuequn Shang},
title = {An end-to-end heterogeneous graph representation learning-based framework
for drug-target interaction prediction},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa430},
doi = {10.1093/BIB/BBAA430},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/PengWGLHHWS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/PengWXWWZLLLT21,
author = {Yayuan Peng and
Manjiong Wang and
Yixiang Xu and
Zengrui Wu and
Jiye Wang and
Chao Zhang and
Guixia Liu and
Weihua Li and
Jian Li and
Yun Tang},
title = {Drug repositioning by prediction of drug's anatomical therapeutic
chemical code via network-based inference approaches},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {2058--2072},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa027},
doi = {10.1093/BIB/BBAA027},
timestamp = {Tue, 27 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/PengWXWWZLLLT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/PengXWTHS21,
author = {Jiajie Peng and
Hansheng Xue and
Zhongyu Wei and
Idil Tuncali and
Jianye Hao and
Xuequn Shang},
title = {Integrating multi-network topology for gene function prediction using
deep neural networks},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {2096--2105},
year = {2021},
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doi = {10.1093/BIB/BBAA036},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/PengXWTHS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/PengZZL21,
author = {Hui Peng and
Yi Zheng and
Zhixun Zhao and
Jinyan Li},
title = {Multigene editing: current approaches and beyond},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa396},
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timestamp = {Wed, 22 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/PengZZL21.bib},
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Gualberto Asencio{-}Cort{\'{e}}s and
Ana M. Brokate{-}Llanos and
Gloria Brea{-}Calvo and
Rosario Rodr{\'{\i}}guez{-}Gri{\~{n}}olo and
Andr{\'{e}}s Garz{\'{o}}n and
Manuel J. Mu{\~{n}}oz},
title = {Serial co-expression analysis of host factors from SARS-CoV viruses
highly converges with former high-throughput screenings and proposes
key regulators},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1038--1052},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa419},
doi = {10.1093/BIB/BBAA419},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/Perez-PulidoABB21.bib},
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author = {Cindy Perscheid},
title = {Integrative biomarker detection on high-dimensional gene expression
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journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa151},
doi = {10.1093/BIB/BBAA151},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
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author = {Stefanie Peschel and
Christian L. M{\"{u}}ller and
Erika von Mutius and
Anne{-}Laure Boulesteix and
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{R}},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
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timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/PeschelMMBD21.bib},
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Xiaomei Li and
Buu Minh Thanh Truong and
Thin Nguyen and
Lin Liu and
Jiuyong Li and
Thuc Duy Le},
title = {The winning methods for predicting cellular position in the {DREAM}
single-cell transcriptomics challenge},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa181},
doi = {10.1093/BIB/BBAA181},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/PhamLTNLLL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/PhanCLYLLHTC21,
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Amrita Chattopadhyay and
Tsui{-}Ting Lee and
Hsiang{-}I Yin and
Tzu{-}Pin Lu and
Liang{-}Chuan Lai and
Hsiao{-}Lin Hwa and
Mong{-}Hsun Tsai and
Eric Y. Chuang},
title = {High-performance deep learning pipeline predicts individuals in mixtures
of {DNA} using sequencing data},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab283},
doi = {10.1093/BIB/BBAB283},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/PhanCLYLLHTC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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Linh C. Nguyen and
Ghita Ghislat and
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pharmaco-omic modeling},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab312},
doi = {10.1093/BIB/BBAB312},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/PiyawajanusornN21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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Lucian P. Smith and
Herbert M. Sauro},
title = {Publishing reproducible dynamic kinetic models},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa152},
doi = {10.1093/BIB/BBAA152},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/PorubskySS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/PrabakaranRKG21,
author = {R. Prabakaran and
Puneet Rawat and
Sandeep Kumar and
M. Michael Gromiha},
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aggregation on diverse datasets},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab240},
doi = {10.1093/BIB/BBAB240},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/PrabakaranRKG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/QiWGXZ21,
author = {Ren Qi and
Jin Wu and
Fei Guo and
Lei Xu and
Quan Zou},
title = {A spectral clustering with self-weighted multiple kernel learning
method for single-cell RNA-seq data},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
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doi = {10.1093/BIB/BBAA216},
timestamp = {Tue, 12 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/QiWGXZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/QinDLCMJ21,
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of SARS-CoV-2},
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volume = {22},
number = {6},
year = {2021},
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doi = {10.1093/BIB/BBAB222},
timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
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@article{DBLP:journals/bib/QinLCX21,
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volume = {22},
number = {6},
year = {2021},
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timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
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@article{DBLP:journals/bib/QinXWJDYSJMX21,
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Weijun Xu and
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Fei Ma and
Xinyi Xia},
title = {Analyzing master regulators and scRNA-seq of {COVID-19} patients reveals
an underlying anti-SARS-CoV-2 mechanism of {ZNF} proteins},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
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timestamp = {Wed, 22 Sep 2021 01:00:00 +0200},
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}
@article{DBLP:journals/bib/QiuATHJLWX21,
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Zheng An and
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volume = {22},
number = {4},
year = {2021},
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transition},
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volume = {22},
number = {6},
year = {2021},
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timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
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@article{DBLP:journals/bib/QiuCQLZXM21,
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Siyuan Chen and
Yuhong Qi and
Chunni Liu and
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volume = {22},
number = {3},
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timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
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@article{DBLP:journals/bib/QiuCZ21,
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Wai{-}Ki Ching and
Quan Zou},
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number = {5},
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@article{DBLP:journals/bib/QuZLDTZP21,
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timestamp = {Wed, 22 Sep 2021 01:00:00 +0200},
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@article{DBLP:journals/bib/RahmanGPMDA21,
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timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
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@article{DBLP:journals/bib/RahmanISILBCBTF21,
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Rosella Ciurleo and
Alessia Bramanti and
Andrey Tchorbanov and
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title = {Discovering common pathogenetic processes between {COVID-19} and diabetes
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volume = {22},
number = {6},
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timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
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@article{DBLP:journals/bib/RahmanRPHCQM21,
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title = {Bioinformatics and machine learning methodologies to identify the
effects of central nervous system disorders on glioblastoma progression},
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volume = {22},
number = {5},
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timestamp = {Tue, 17 May 2022 01:00:00 +0200},
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@article{DBLP:journals/bib/RajputKMTK21,
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number = {2},
pages = {1076--1084},
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timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
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S. M. Omar Faruque Babu and
Payar Hossain and
Asif Shahriar and
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Talha Bin Emran and
Jesus Simal{-}Gandara},
title = {A molecular modelling approach for identifying antiviral selenium-containing
heterocyclic compounds that inhibit the main protease of SARS-CoV-2:
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journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1476--1498},
year = {2021},
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timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
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journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab357},
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timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
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Jiu Chen and
Xiangrong Zhang and
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title = {Genetic mechanisms of {COVID-19} and its association with smoking
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volume = {22},
number = {6},
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timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
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number = {3},
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timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
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volume = {22},
number = {4},
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timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
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number = {6},
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disease subtype discovery},
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number = {6},
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Peter van Heusden and
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title = {Capacity building for whole genome sequencing of Mycobacterium tuberculosis
and bioinformatics in high {TB} burden countries},
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number = {4},
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timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
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number = {4},
year = {2021},
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journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {1--2},
year = {2021},
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number = {6},
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title = {{SBGN} Bricks Ontology as a tool to describe recurring concepts in
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volume = {22},
number = {5},
year = {2021},
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number = {5},
year = {2021},
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timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
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R. Peir{\'{o}}{-}Pastor and
Fernando Carrasco{-}Ramiro and
R. Amils and
J. M. Requena and
J. Berenguer and
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title = {{ARAMIS:} From systematic errors of {NGS} long reads to accurate assemblies},
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volume = {22},
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doi = {10.1093/BIB/BBAB025},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
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volume = {22},
number = {6},
year = {2021},
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timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
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volume = {22},
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Md. Imran Khan and
Md. Rezanur Rahman and
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Shuvo Saha Roy and
Julian M. W. Quinn and
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title = {Diseasome and comorbidities complexities of SARS-CoV-2 infection with
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pages = {1415--1429},
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timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
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journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {601--603},
year = {2021},
url = {https://doi.org/10.1093/bib/bbz168},
doi = {10.1093/BIB/BBZ168},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/SavojardoMCF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {610},
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title = {Application of Bayesian phylogenetic inference modelling for evolutionary
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Arvind Singh Mer and
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neural network},
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number = {6},
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Sameer Shrivastava and
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peptides in animal kingdom},
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@article{DBLP:journals/bib/SharmaSSKSS21,
author = {Ritesh Sharma and
Sameer Shrivastava and
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Abhinav Kumar and
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using bidirectional {LSTM} with word2vec},
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number = {5},
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title = {{TOD-CUP:} a gene expression rank-based majority vote algorithm for
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timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
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Jinping Pang and
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Lei Xu and
Dong{-}Sheng Cao and
Tingjun Hou},
title = {Beware of the generic machine learning-based scoring functions in
structure-based virtual screening},
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Xiaojun Yao and
Lei Xu and
Dong{-}Sheng Cao and
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title = {Can machine learning consistently improve the scoring power of classical
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volume = {22},
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Tao Luo and
Yuan{-}Ke Zhou and
Han Yu and
Pu{-}Feng Du},
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networks},
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number = {5},
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timestamp = {Tue, 05 Oct 2021 01:00:00 +0200},
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Gaoqi Weng and
Xujun Zhang and
Elaine Lai{-}Han Leung and
Xiaojun Yao and
Jinping Pang and
Xin Chai and
Dan Li and
Ercheng Wang and
Dong{-}Sheng Cao and
Tingjun Hou},
title = {Accuracy or novelty: what can we gain from target-specific machine-learning-based
scoring functions in virtual screening?},
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volume = {22},
number = {5},
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timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
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Hui Cui and
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number = {3},
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timestamp = {Fri, 22 Apr 2022 01:00:00 +0200},
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Ying Jiang and
Yang Yang and
Xiangmei Li and
Jiayue Qiu and
Jiashuo Wu and
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number = {5},
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Wei Vivian Li},
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number = {6},
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timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
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@article{DBLP:journals/bib/ShiCHWX21,
author = {Qiang Shi and
Weiya Chen and
Siqi Huang and
Yan Wang and
Zhidong Xue},
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volume = {22},
number = {1},
pages = {194--218},
year = {2021},
url = {https://doi.org/10.1093/bib/bbz156},
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timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
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@article{DBLP:journals/bib/ShiQYWWZDX21,
author = {Shuo Shi and
Qiheng Qian and
Shuhuan Yu and
Qi Wang and
Jinyue Wang and
Jingyao Zeng and
Zhenglin Du and
Jing{-}Fa Xiao},
title = {RefRGim: an intelligent reference panel reconstruction method for
genotype imputation with convolutional neural networks},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
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timestamp = {Fri, 17 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ShiQYWWZDX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Mingguang Shi and
Zhou Sheng and
Hao Tang},
title = {Prognostic outcome prediction by semi-supervised least squares classification},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
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timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ShiST21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/ShiWMWHY21,
author = {Xing{-}Xing Shi and
Feng{-}Xu Wu and
Long{-}Can Mei and
Yu{-}Liang Wang and
Ge{-}Fei Hao and
Guangfu Yang},
title = {Bioinformatics toolbox for exploring protein phosphorylation network},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa134},
doi = {10.1093/BIB/BBAA134},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ShiWMWHY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Yunda Si and
Chengfei Yan},
title = {Improved protein contact prediction using dimensional hybrid residual
networks and singularity enhanced loss function},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab341},
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timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/SiY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SimoneauDGS21,
author = {Jo{\"{e}}l Simoneau and
Simon Dumontier and
Ryan Gosselin and
Michelle S. Scott},
title = {Current RNA-seq methodology reporting limits reproducibility},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {140--145},
year = {2021},
url = {https://doi.org/10.1093/bib/bbz124},
doi = {10.1093/BIB/BBZ124},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/SimoneauDGS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Natesh Singh and
Ludovic Chaput and
Bruno O. Villoutreix},
title = {Virtual screening web servers: designing chemical probes and drug
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journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1790--1818},
year = {2021},
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doi = {10.1093/BIB/BBAA034},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/SinghMR21,
author = {Dalwinder Singh and
Akansha Madhawan and
Joy Roy},
title = {Identification of multiple RNAs using feature fusion},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab178},
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timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/SinghMR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Dalwinder Singh and
Akansha Madhawan and
Joy Roy},
title = {Erratum to: Identification of multiple RNAs using feature fusion},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab218},
doi = {10.1093/BIB/BBAB218},
timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/SinghMR21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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Deborah A. Nickerson and
Joshua D. Smith and
Yongmei Liu and
Sina Gharib and
Susan Redline and
Stephen S. Rich and
Jerome I. Rotter and
Kent D. Taylor},
title = {Benchmarking association analyses of continuous exposures with RNA-seq
in observational studies},
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biburl = {https://dblp.org/rec/journals/bib/SoferKAADNSLGRR21.bib},
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@article{DBLP:journals/bib/SongCTWSMRM21,
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Zhen Wei and
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Daniel J. Rigden and
Jia Meng},
title = {ConsRM: collection and large-scale prediction of the evolutionarily
conserved {RNA} methylation sites, with implications for the functional
epitranscriptome},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
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timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
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@article{DBLP:journals/bib/SongCZYJXZZLZL21,
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Hao Cai and
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Jing Yang and
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Zhangxiang Zhao and
Xin Li and
Wenyuan Zhao and
Xia Li},
title = {Multilevel prioritization of gene regulators associated with consensus
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number = {5},
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timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
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@article{DBLP:journals/bib/SongLLZ21,
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Fen Li and
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volume = {22},
number = {6},
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@article{DBLP:journals/bib/SongS21,
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Jing Su},
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number = {5},
year = {2021},
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@article{DBLP:journals/bib/SpigaCDPBBS21,
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number = {5},
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@article{DBLP:journals/bib/StatonCSWABCFGG21,
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Ethalinda Cannon and
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Irene Cobo{-}Sim{\'{o}}n and
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Valentin Guignon and
Jessica Gunoskey and
Blake Inderski and
Sook Jung and
Kelly Lager and
Dorrie Main and
Monica Poelchau and
Risharde Ramnath and
Peter Richter and
Joe West and
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journal = {Briefings Bioinform.},
volume = {22},
number = {6},
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timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
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journal = {Briefings Bioinform.},
volume = {22},
number = {3},
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timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
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@article{DBLP:journals/bib/SuHLLW21,
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Linlin He and
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Xiaofeng Liu and
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journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
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timestamp = {Tue, 02 Jan 2024 00:00:00 +0100},
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}
@article{DBLP:journals/bib/SuWLW21,
author = {Ran Su and
Huichen Wu and
Xinyi Liu and
Leyi Wei},
title = {Predicting drug-induced hepatotoxicity based on biological feature
maps and diverse classification strategies},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {428--437},
year = {2021},
url = {https://doi.org/10.1093/bib/bbz165},
doi = {10.1093/BIB/BBZ165},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/SuWLW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SuYW21,
author = {Kenong Su and
Tianwei Yu and
Hao Wu},
title = {Accurate feature selection improves single-cell RNA-seq cell clustering},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab034},
doi = {10.1093/BIB/BBAB034},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
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@article{DBLP:journals/bib/SubkhankulovaNT21,
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Fedor Naumenko and
Oleg E. Tolmachov and
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title = {Novel ChIP-seq simulating program with superior versatility: isChIP},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
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doi = {10.1093/BIB/BBAA352},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/SubkhankulovaNT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SunDZ21,
author = {Shanwen Sun and
BenZhi Dong and
Quan Zou},
title = {Revisiting genome-wide association studies from statistical modelling
to machine learning},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa263},
doi = {10.1093/BIB/BBAA263},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
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}
@article{DBLP:journals/bib/SunWS21,
author = {Kun Sun and
Huating Wang and
Hao Sun},
title = {{NAMS} webserver: coding potential assessment and functional annotation
of plant transcripts},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa200},
doi = {10.1093/BIB/BBAA200},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
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}
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title = {A machine learning framework to predict antibiotic resistance traits
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in bacterial strains},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab179},
doi = {10.1093/BIB/BBAB179},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
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}
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Xiaoman Li and
Haiyan Hu},
title = {Interpretation of deep learning in genomics and epigenomics},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa177},
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biburl = {https://dblp.org/rec/journals/bib/TalukderBLH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TanKSZ21,
author = {Hua Tan and
Pora Kim and
Peiqing Sun and
Xiaobo Zhou},
title = {miRactDB characterizes miRNA-gene relation switch between normal and
cancer tissues across pan-cancer},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa089},
doi = {10.1093/BIB/BBAA089},
timestamp = {Tue, 17 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/TanKSZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TangLSL21,
author = {Xinru Tang and
Jiawei Luo and
Cong Shen and
Zihan Lai},
title = {Multi-view Multichannel Attention Graph Convolutional Network for
miRNA-disease association prediction},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab174},
doi = {10.1093/BIB/BBAB174},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/TangLSL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TangMWLZ21,
author = {Jing Tang and
Minjie Mou and
Yunxia Wang and
Yongchao Luo and
Feng Zhu},
title = {MetaFS: Performance assessment of biomarker discovery in metaproteomics},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa105},
doi = {10.1093/BIB/BBAA105},
timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/TangMWLZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TangZCWZXZ21,
author = {Xi Tang and
Tao Zhang and
Na Cheng and
Huadong Wang and
Chun{-}Hou Zheng and
Junfeng Xia and
Tiejun Zhang},
title = {usDSM: a novel method for deleterious synonymous mutation prediction
using undersampling scheme},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab123},
doi = {10.1093/BIB/BBAB123},
timestamp = {Tue, 10 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/TangZCWZXZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TangZCWZXZ21a,
author = {Xi Tang and
Tao Zhang and
Na Cheng and
Huadong Wang and
Chun{-}Hou Zheng and
Junfeng Xia and
Tiejun Zhang},
title = {Erratum: usDSM: a novel method for deleterious synonymous mutation
prediction using undersampling scheme},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab247},
doi = {10.1093/BIB/BBAB247},
timestamp = {Tue, 10 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/TangZCWZXZ21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TangZXZF21,
author = {Furong Tang and
Lichao Zhang and
Lei Xu and
Quan Zou and
Hailin Feng},
title = {The accurate prediction and characterization of cancerlectin by a
combined machine learning and {GO} analysis},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab227},
doi = {10.1093/BIB/BBAB227},
timestamp = {Fri, 22 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/TangZXZF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TanoliSSWTV21,
author = {ZiaurRehman Tanoli and
Umair Seemab and
Andreas Scherer and
Krister Wennerberg and
Jing Tang and
Markus V{\"{a}}h{\"{a}}{-}Koskela},
title = {Exploration of databases and methods supporting drug repurposing:
a comprehensive survey},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1656--1678},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa003},
doi = {10.1093/BIB/BBAA003},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/TanoliSSWTV21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TayaraAC21,
author = {Hilal Tayara and
Ibrahim Abdelbaky and
Kil To Chong},
title = {Recent omics-based computational methods for {COVID-19} drug discovery
and repurposing},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab339},
doi = {10.1093/BIB/BBAB339},
timestamp = {Sun, 24 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/TayaraAC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TazAPAMM21,
author = {Tasnimul Alam Taz and
Kawsar Ahmed and
Bikash Kumar Paul and
Fahad Ahmed Al{-}Zahrani and
S. M. Hasan Mahmud and
Mohammad Ali Moni},
title = {Identification of biomarkers and pathways for the SARS-CoV-2 infections
that make complexities in pulmonary arterial hypertension patients},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1451--1465},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab026},
doi = {10.1093/BIB/BBAB026},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/TazAPAMM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TazAPKAMM21,
author = {Tasnimul Alam Taz and
Kawsar Ahmed and
Bikash Kumar Paul and
Md. Kawsar and
Nargis Aktar and
S. M. Hasan Mahmud and
Mohammad Ali Moni},
title = {Network-based identification genetic effect of SARS-CoV-2 infections
to Idiopathic pulmonary fibrosis {(IPF)} patients},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1254--1266},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa235},
doi = {10.1093/BIB/BBAA235},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/TazAPKAMM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TengSRLT21,
author = {Shaolei Teng and
Adebiyi Sobitan and
Raina Rhoades and
Dongxiao Liu and
Qiyi Tang},
title = {Systemic effects of missense mutations on SARS-CoV-2 spike glycoprotein
stability and receptor-binding affinity},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1239--1253},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa233},
doi = {10.1093/BIB/BBAA233},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/TengSRLT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TengSRLT21a,
author = {Shaolei Teng and
Adebiyi Sobitan and
Raina Rhoades and
Dongxiao Liu and
Qiyi Tang},
title = {Corrigendum to: Systemic effects of missense mutations on SARS-CoV-2
spike glycoprotein stability and receptor-binding affinity},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab176},
doi = {10.1093/BIB/BBAB176},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/TengSRLT21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ThindMTKDKRA21,
author = {Amarinder Singh Thind and
Isha Monga and
Prasoon Kumar Thakur and
Pallawi Kumari and
Kiran Dindhoria and
Monika Krzak and
Marie Ranson and
Bruce Ashford},
title = {Demystifying emerging bulk RNA-Seq applications: the application and
utility of bioinformatic methodology},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab259},
doi = {10.1093/BIB/BBAB259},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ThindMTKDKRA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TianZLTCXWZJCFX21,
author = {Rui Tian and
Ping Zhou and
Mengyuan Li and
Jinfeng Tan and
Zifeng Cui and
Wei Xu and
Jingyue Wei and
Jingjing Zhu and
Zhuang Jin and
Chen Cao and
Weiwen Fan and
Weiling Xie and
Zhaoyue Huang and
Hongxian Xie and
Zeshan You and
Gang Niu and
Canbiao Wu and
Xiaofang Guo and
Xuchu Weng and
Xun Tian and
Fubing Yu and
Zhiying Yu and
Jiuxing Liang and
Zheng Hu},
title = {DeepHPV: a deep learning model to predict human papillomavirus integration
sites},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa242},
doi = {10.1093/BIB/BBAA242},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/TianZLTCXWZJCFX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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author = {Patrick Brendan Timmons and
Chandralal M. Hewage},
title = {{APPTEST} is a novel protocol for the automatic prediction of peptide
tertiary structures},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab308},
doi = {10.1093/BIB/BBAB308},
timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/TimmonsH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TimmonsH21a,
author = {Patrick Brendan Timmons and
Chandralal M. Hewage},
title = {{ENNAVIA} is a novel method which employs neural networks for antiviral
and anti-coronavirus activity prediction for therapeutic peptides},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab258},
doi = {10.1093/BIB/BBAB258},
timestamp = {Thu, 05 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/TimmonsH21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TomazouBMZOKLKC21,
author = {Marios Tomazou and
Marilena M. Bourdakou and
George Minadakis and
Margarita Zachariou and
Anastasis Oulas and
Evangelos Karatzas and
Eleni M. Loizidou and
Andrea C. Kakouri and
Christiana C. Christodoulou and
Kyriaki Savva and
Maria Zanti and
Anna Onisiforou and
Sotiroula Afxenti and
Jan Richter and
Christina G. Christodoulou and
Theodoros C. Kyprianou and
George Kolios and
Nikolas Dietis and
George M. Spyrou},
title = {Multi-omics data integration and network-based analysis drives a multiplex
drug repurposing approach to a shortlist of candidate drugs against
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timestamp = {Sat, 13 May 2023 01:00:00 +0200},
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@article{DBLP:journals/bib/Toro-DominguezV21,
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Marta E. Alarc{\'{o}}n{-}Riquelme and
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title = {A survey of gene expression meta-analysis: methods and applications},
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@article{DBLP:journals/bib/ToureFNVK21,
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@article{DBLP:journals/bib/Tsukiyama0FK21,
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Cornelia Brunner and
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Hartmut D{\"{o}}hner and
Johann M. Kraus and
Hans A. Kestler},
title = {Erratum to: Analysis, identification and visualization of subgroups
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Andrew J. Saykin and
Li Chen},
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Su Chen and
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Lixin Xia and
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title = {ExoBCD: a comprehensive database for exosomal biomarker discovery
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volume = {22},
number = {3},
year = {2021},
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timestamp = {Tue, 13 Jun 2023 01:00:00 +0200},
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Dong{-}Sheng Cao and
Cunchen Tang and
Lei Xu and
Qiaojun He and
Bo Yang and
Xi Chen and
Huiyong Sun and
Tingjun Hou},
title = {DeepAtomicCharge: a new graph convolutional network-based architecture
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volume = {22},
number = {3},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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Chia{-}Ru Chung and
Zhuo Wang and
Shangfu Li and
Bo{-}Yu Chu and
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Jang{-}Jih Lu and
Tzong{-}Yi Lee},
title = {A large-scale investigation and identification of methicillin-resistant
Staphylococcus aureus based on peaks binning of matrix-assisted laser
desorption ionization-time of flight {MS} spectra},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
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timestamp = {Wed, 01 Nov 2023 00:00:00 +0100},
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author = {Bingbo Wang and
Xianan Dong and
Jie Hu and
Xiujuan Ma and
Chao Han and
Yajun Wang and
Lin Gao},
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volume = {22},
number = {6},
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timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Wei Wang and
Qiuying Dai and
Fang Li and
Yi Xiong and
Dong{-}Qing Wei},
title = {MLCDForest: multi-label classification with deep forest in disease
prediction for long non-coding RNAs},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa104},
doi = {10.1093/BIB/BBAA104},
timestamp = {Thu, 05 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangDLXW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangGFXZ21,
author = {Lu Wang and
Boran Gao and
Yue Fan and
Fuzhong Xue and
Xiang Zhou},
title = {Mendelian randomization under the omnigenic architecture},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab322},
doi = {10.1093/BIB/BBAB322},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangGFXZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangHZC21,
author = {Chun{-}Chun Wang and
Chendi Han and
Qi Zhao and
Xing Chen},
title = {Circular RNAs and complex diseases: from experimental results to computational
models},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab286},
doi = {10.1093/BIB/BBAB286},
timestamp = {Tue, 25 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangHZC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangJYHLWQSC21,
author = {Ye Wang and
Yuchao Jiang and
Bing Yao and
Kun Huang and
Yunlong Liu and
Yue Wang and
Xiao Qin and
Andrew J. Saykin and
Li Chen},
title = {WEVar: a novel statistical learning framework for predicting noncoding
regulatory variants},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab189},
doi = {10.1093/BIB/BBAB189},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangJYHLWQSC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangL21,
author = {Lucy Lu Wang and
Kyle Lo},
title = {Text mining approaches for dealing with the rapidly expanding literature
on {COVID-19}},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {781--799},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa296},
doi = {10.1093/BIB/BBAA296},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangL21a,
author = {Zhengfeng Wang and
Xiujuan Lei},
title = {Prediction of {RBP} binding sites on circRNAs using an LSTM-based
deep sequence learning architecture},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab342},
doi = {10.1093/BIB/BBAB342},
timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/WangL21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangL21b,
author = {Wei Wang and
Wei Liu},
title = {PCLasso: a protein complex-based, group lasso-Cox model for accurate
prognosis and risk protein complex discovery},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab212},
doi = {10.1093/BIB/BBAB212},
timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/WangL21b.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangLG21,
author = {Dan Wang and
Fei{-}Liao Lai and
Feng Gao},
title = {Ori-Finder 3: a web server for genome-wide prediction of replication
origins in Saccharomyces cerevisiae},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa182},
doi = {10.1093/BIB/BBAA182},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangLG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangLSGLDH21,
author = {Pan Wang and
Qi Li and
Nan Sun and
Yibo Gao and
Jun S. Liu and
Ke Deng and
Jie He},
title = {MiRACLe: an individual-specific approach to improve microRNA-target
prediction based on a random contact model},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa117},
doi = {10.1093/BIB/BBAA117},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangLSGLDH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangLWFW21,
author = {Xiaokang Wang and
Jinfeng Liu and
Danwen Wang and
Maohui Feng and
Xiongzhi Wu},
title = {Epigenetically regulated gene expression profiles reveal four molecular
subtypes with prognostic and therapeutic implications in colorectal
cancer},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa309},
doi = {10.1093/BIB/BBAA309},
timestamp = {Fri, 13 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/WangLWFW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangLWLZZLWLCWC21,
author = {Hong Wang and
Jing Li and
Siyu Wang and
Xiaoyan Lu and
Guosi Zhang and
Youyuan Zhuang and
Liansheng Li and
Wencan Wang and
Peng Lin and
Chong Chen and
Hao Wang and
Qi Chen and
Yongshuai Jiang and
Jia Qu and
Liangde Xu},
title = {Contribution of structural accessibility to the cooperative relationship
of TF-lncRNA in myopia},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab082},
doi = {10.1093/BIB/BBAB082},
timestamp = {Wed, 22 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangLWLZZLWLCWC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangLXTZ21,
author = {Zerong Wang and
Dongyang Liu and
Baofang Xu and
Ruixia Tian and
Yongchun Zuo},
title = {Modular arrangements of sequence motifs determine the functional diversity
of {KDM} proteins},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa215},
doi = {10.1093/BIB/BBAA215},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangLXTZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangLXXCDWZZLF21,
author = {Yunlong Wang and
Yaqi Liu and
Qian Xu and
Yao Xu and
Kai Cao and
Nan Deng and
Ruimin Wang and
Xueying Zhang and
Ruiqin Zheng and
Guoliang Li and
Yaping Fang},
title = {{TAD} boundary and strength prediction by integrating sequence and
epigenetic profile information},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab139},
doi = {10.1093/BIB/BBAB139},
timestamp = {Wed, 22 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangLXXCDWZZLF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangLXXZZ21,
author = {Liujing Wang and
Jun Liu and
Yuhao Xia and
Jiakang Xu and
Xiaogen Zhou and
Guijun Zhang},
title = {Distance-guided protein folding based on generalized descent direction},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab296},
doi = {10.1093/BIB/BBAB296},
timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/WangLXXZZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangLYCEML21,
author = {Qi Wang and
Zhaoqian Liu and
Bo Yan and
Wen{-}Chi Chou and
Laurence Ettwiller and
Qin Ma and
Bingqiang Liu},
title = {A novel computational framework for genome-scale alternative transcription
units prediction},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab162},
doi = {10.1093/BIB/BBAB162},
timestamp = {Tue, 16 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangLYCEML21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangLYWML21,
author = {Jingru Wang and
Jin Li and
Kun Yue and
Li Wang and
Yuyun Ma and
Qing Li},
title = {{NMCMDA:} neural multicategory MiRNA-disease association prediction},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab074},
doi = {10.1093/BIB/BBAB074},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/WangLYWML21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangLZCLM21,
author = {Zhicheng Wang and
Yushi Luan and
Xiaoxu Zhou and
Jun Cui and
Feishi Luan and
Jun Meng},
title = {Optimized combination methods for exploring and verifying disease-resistant
transcription factors in melon},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa326},
doi = {10.1093/BIB/BBAA326},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/WangLZCLM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangLZHQLL21,
author = {Xiting Wang and
Meng Liu and
Yiling Zhang and
Shuangshuang He and
Caimeng Qin and
Yu Li and
Tao Lu},
title = {Deep fusion learning facilitates anatomical therapeutic chemical recognition
in drug repurposing and discovery},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab289},
doi = {10.1093/BIB/BBAB289},
timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/WangLZHQLL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangMLSJ21,
author = {Zhe Wang and
Lei Meng and
Hong Liu and
Liang Shen and
Hong{-}Fang Ji},
title = {AlzRiskMR database: an online database for the impact of exposure
factors on Alzheimer's disease},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa213},
doi = {10.1093/BIB/BBAA213},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangMLSJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangNW21,
author = {Mengchi Wang and
Vu Ngo and
Wei Wang},
title = {Deciphering the genetic code of {DNA} methylation},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa424},
doi = {10.1093/BIB/BBAA424},
timestamp = {Wed, 22 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangNW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangPCMSCCTWMMZ21,
author = {Haiying Wang and
Estelle Pujos{-}Guillot and
Blandine Comte and
Joao Luis de Miranda and
Vojtech Spiwok and
Ivan Chorbev and
Filippo Castiglione and
Paolo Tieri and
Steven Watterson and
Roisin McAllister and
Tiago De Melo Malaquias and
Massimiliano Zanin and
Taranjit Singh Rai and
Huiru Zheng},
title = {Deep learning in systems medicine},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1543--1559},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa237},
doi = {10.1093/BIB/BBAA237},
timestamp = {Wed, 01 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/WangPCMSCCTWMMZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangSXPL21,
author = {Shiwei Wang and
Qi Sun and
Youjun Xu and
Jianfeng Pei and
Luhua Lai},
title = {A transferable deep learning approach to fast screen potential antiviral
drugs against SARS-CoV-2},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab211},
doi = {10.1093/BIB/BBAB211},
timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/WangSXPL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangTCLH21,
author = {Saidi Wang and
Amlan Talukder and
Mingyu Cha and
Xiaoman Li and
Haiyan Hu},
title = {Computational annotation of miRNA transcription start sites},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {380--392},
year = {2021},
url = {https://doi.org/10.1093/bib/bbz178},
doi = {10.1093/BIB/BBZ178},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangTCLH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangTCLH21a,
author = {Saidi Wang and
Amlan Talukder and
Mingyu Cha and
Xiaoman Li and
Haiyan Hu},
title = {Corrigendum to: Computational annotation of miRNA transcription start
sites},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {609},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa024},
doi = {10.1093/BIB/BBAA024},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangTCLH21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangTDG21,
author = {Hao Wang and
Jijun Tang and
Yijie Ding and
Fei Guo},
title = {Exploring associations of non-coding RNAs in human diseases via three-matrix
factorization with hypergraph-regular terms on center kernel alignment},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa409},
doi = {10.1093/BIB/BBAA409},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangTDG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangWFSZ21,
author = {Ziye Wang and
Ying Wang and
Jed A. Fuhrman and
Fengzhu Sun and
Shanfeng Zhu},
title = {Corrigendum to: Assessment of metagenomic assemblers based on hybrid
reads of real and simulated metagenomic sequences},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {611},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa085},
doi = {10.1093/BIB/BBAA085},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangWFSZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangWSJWHY21,
author = {Yu{-}Liang Wang and
Fan Wang and
Xing{-}Xing Shi and
Chen{-}Yang Jia and
Feng{-}Xu Wu and
Ge{-}Fei Hao and
Guangfu Yang},
title = {Cloud 3D-QSAR: a web tool for the development of quantitative structure-activity
relationship models in drug discovery},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa276},
doi = {10.1093/BIB/BBAA276},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/WangWSJWHY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangWYXWGGXWM21,
author = {Zihao Wang and
Yaning Wang and
Tianrui Yang and
Hao Xing and
Yuekun Wang and
Lu Gao and
Xiaopeng Guo and
Bing Xing and
Yu Wang and
Wenbin Ma},
title = {Machine learning revealed stemness features and a novel stemness-based
classification with appealing implications in discriminating the prognosis,
immunotherapy and temozolomide responses of 906 glioblastoma patients},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab032},
doi = {10.1093/BIB/BBAB032},
timestamp = {Thu, 05 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/WangWYXWGGXWM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangXQCLCYZMHQH21,
author = {Shibo Wang and
Yang Xu and
Han Qu and
Yanru Cui and
Ruidong Li and
John M. Chater and
Lei Yu and
Rui Zhou and
Renyuan Ma and
Yuhan Huang and
Yiru Qiao and
Xuehai Hu and
Weibo Xie and
Zhenyu Jia},
title = {Boosting predictabilities of agronomic traits in rice using bivariate
genomic selection},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa103},
doi = {10.1093/BIB/BBAA103},
timestamp = {Wed, 31 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/WangXQCLCYZMHQH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangXTXLLZP21,
author = {Xiaoqi Wang and
Bin Xin and
Weihong Tan and
Zhijian Xu and
Kenli Li and
Fei Li and
Wu Zhong and
Shaoliang Peng},
title = {DeepR2cov: deep representation learning on heterogeneous drug networks
to discover anti-inflammatory agents for {COVID-19}},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab226},
doi = {10.1093/BIB/BBAB226},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangXTXLLZP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangXZSYCPLZY21,
author = {Shiyuan Wang and
Yuqiang Xiong and
Qi Zhang and
Dongqing Su and
Chunlu Yu and
Yiyin Cao and
Yi Pan and
Qianzi Lu and
Yongchun Zuo and
Lei Yang},
title = {Clinical significance and immunogenomic landscape analyses of the
immune cell signature based prognostic model for patients with breast
cancer},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa311},
doi = {10.1093/BIB/BBAA311},
timestamp = {Wed, 24 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/WangXZSYCPLZY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangYCJT21,
author = {Yinyin Wang and
Hongbin Yang and
Linxiao Chen and
Mohieddin Jafari and
Jing Tang},
title = {Network-based modeling of herb combinations in traditional Chinese
medicine},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab106},
doi = {10.1093/BIB/BBAB106},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangYCJT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangYCW21,
author = {Yongcui Wang and
Yingxi Yang and
Shilong Chen and
Jiguang Wang},
title = {DeepDRK: a deep learning framework for drug repurposing through kernel-based
multi-omics integration},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab048},
doi = {10.1093/BIB/BBAB048},
timestamp = {Tue, 05 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangYCW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangYDZY21,
author = {Jun Wang and
Ziying Yang and
Carlotta Domeniconi and
Xiangliang Zhang and
Guoxian Yu},
title = {Cooperative driver pathway discovery via fusion of multi-relational
data of genes, miRNAs and pathways},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1984--1999},
year = {2021},
url = {https://doi.org/10.1093/bib/bbz167},
doi = {10.1093/BIB/BBZ167},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangYDZY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangYLW21,
author = {Xin Wang and
Yang Yang and
Jian Liu and
Guohua Wang},
title = {The stacking strategy-based hybrid framework for identifying non-coding
RNAs},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab023},
doi = {10.1093/BIB/BBAB023},
timestamp = {Wed, 22 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangYLW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangYYZLH21,
author = {Lei Wang and
Xin Yan and
Zhu{-}Hong You and
Xi Zhou and
Hao{-}Yuan Li and
Yu{-}An Huang},
title = {{SGANRDA:} semi-supervised generative adversarial networks for predicting
circRNA-disease associations},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab028},
doi = {10.1093/BIB/BBAB028},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangYYZLH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangZC21,
author = {Chun{-}Chun Wang and
Yan Zhao and
Xing Chen},
title = {Drug-pathway association prediction: from experimental results to
computational models},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa061},
doi = {10.1093/BIB/BBAA061},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangZC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangZD21,
author = {Weiwen Wang and
Xiwen Zhang and
Dao{-}Qing Dai},
title = {DeFusion: a denoised network regularization framework for multi-omics
integration},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab057},
doi = {10.1093/BIB/BBAB057},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangZD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangZLCXWSLCW21,
author = {Panqin Wang and
Qingfeng Zhang and
Shihua Li and
Ben Cheng and
Han Xue and
Zhen Wei and
Tian Shao and
Zexian Liu and
Han Cheng and
Zhenlong Wang},
title = {iCysMod: an integrative database for protein cysteine modifications
in eukaryotes},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa400},
doi = {10.1093/BIB/BBAA400},
timestamp = {Sun, 17 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/WangZLCXWSLCW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangZLL21,
author = {Kaili Wang and
Renyi Zhou and
Yaohang Li and
Min Li},
title = {DeepDTAF: a deep learning method to predict protein-ligand binding
affinity},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab072},
doi = {10.1093/BIB/BBAB072},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/WangZLL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangZY21,
author = {Debby Dan Wang and
Mengxu Zhu and
Hong Yan},
title = {Computationally predicting binding affinity in protein-ligand complexes:
free energy-based simulations and machine learning-based scoring functions},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa107},
doi = {10.1093/BIB/BBAA107},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/WangZY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangZYCZY21,
author = {Shiyuan Wang and
Qi Zhang and
Chunlu Yu and
Yiyin Cao and
Yongchun Zuo and
Lei Yang},
title = {Immune cell infiltration-based signature for prognosis and immunogenomic
analysis in breast cancer},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {2020--2031},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa026},
doi = {10.1093/BIB/BBAA026},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangZYCZY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangZZCQPXDSLDS21,
author = {Yinghan Wang and
Jinfeng Zeng and
Chi Zhang and
Cai Chen and
Zekai Qiu and
Jiali Pang and
Yutian Xu and
Zhiqi Dong and
Yanxin Song and
Weiying Liu and
Peipei Dong and
Litao Sun and
Yao{-}Qing Chen and
Yuelong Shu and
Xiangjun Du},
title = {New framework for recombination and adaptive evolution analysis with
application to the novel coronavirus SARS-CoV-2},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab107},
doi = {10.1093/BIB/BBAB107},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangZZCQPXDSLDS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangZZX21,
author = {Yansu Wang and
Murong Zhou and
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Tatsuya Akutsu and
Trevor Lithgow and
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Jian Li and
Dong{-}Jun Yu and
Jiangning Song},
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You{-}Gan Wang and
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Jian Yu and
Min Liang and
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Jia Qu and
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number = {2},
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Yu Zhang and
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Tiangang Zhang and
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Toshiya Nakaguchi},
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for drug-protein interaction prediction},
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number = {5},
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timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
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number = {6},
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author = {Hideki Yamaguchi and
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title = {Erratum to: Evotuning protocols for Transformer-based variant effect
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volume = {22},
number = {6},
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author = {Zhiqiang Yan and
Jianting An and
Yong Peng and
Siming Kong and
Qiang Liu and
Ming Yang and
Qilong He and
Shi Song and
Yidong Chen and
Wei Chen and
Rong Li and
Jie Qiao and
Liying Yan},
title = {DevOmics: an integrated multi-omics database of human and mouse early
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volume = {22},
number = {6},
year = {2021},
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author = {Fang{-}Fang Yan and
Feng Gao},
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journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1122--1136},
year = {2021},
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timestamp = {Thu, 29 Apr 2021 01:00:00 +0200},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Yumeng Yan and
Sheng{-}You Huang},
title = {Accurate prediction of inter-protein residue-residue contacts for
homo-oligomeric protein complexes},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
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Jingqi Chen and
Xing{-}Ming Zhao},
title = {nMAGMA: a network-enhanced method for inferring risk genes from {GWAS}
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journal = {Briefings Bioinform.},
volume = {22},
number = {4},
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timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
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}
@article{DBLP:journals/bib/YangDPSCWWW21,
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Zhaohong Deng and
Xiaoyong Pan and
Hong{-}Bin Shen and
Kup{-}Sze Choi and
Lei Wang and
Shitong Wang and
Jing Wu},
title = {RNA-binding protein recognition based on multi-view deep feature and
multi-label learning},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
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timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
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author = {Zi{-}Yi Yang and
Jie Dong and
Zhi{-}Jiang Yang and
Mingzhu Yin and
Hong{-}Li Jiang and
Ai{-}Ping Lu and
Xiang Chen and
Tingjun Hou and
Dong{-}Sheng Cao},
title = {ChemFLuo: a web-server for structure analysis and identification of
fluorescent compounds},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
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timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Chen Yang and
Xiaowen Huang and
Yan Li and
Junfei Chen and
Yuanyuan Lv and
Shixue Dai},
title = {Prognosis and personalized treatment prediction in TP53-mutant hepatocellular
carcinoma: an in silico strategy towards precision oncology},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
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doi = {10.1093/BIB/BBAA164},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
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bibsource = {dblp computer science bibliography, https://dblp.org}
}
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author = {Jing Yang and
Ling Hou and
Kun{-}Meng Liu and
Wen{-}Bin He and
Yong Cai and
Feng{-}Qing Yang and
Yuanjia Hu},
title = {ChemGenerator: a web server for generating potential ligands for specific
targets},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa407},
doi = {10.1093/BIB/BBAA407},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/YangHLHCYH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/YangHMLW21,
author = {Yuning Yang and
Zilong Hou and
Zhiqiang Ma and
Xiangtao Li and
Ka{-}Chun Wong},
title = {iCircRBP-DHN: identification of circRNA-RBP interaction sites using
deep hierarchical network},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa274},
doi = {10.1093/BIB/BBAA274},
timestamp = {Mon, 09 Jan 2023 00:00:00 +0100},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Wenzhong Yang and
Guangxu Jin},
title = {Origin-independent analysis links SARS-CoV-2 local genomes with {COVID-19}
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journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {905--913},
year = {2021},
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doi = {10.1093/BIB/BBAA208},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
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author = {Xiaodi Yang and
Xianyi Lian and
Chen Fu and
Stefan Wuchty and
Shiping Yang and
Ziding Zhang},
title = {{HVIDB:} a comprehensive database for human-virus protein-protein
interactions},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {832--844},
year = {2021},
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doi = {10.1093/BIB/BBAA425},
timestamp = {Thu, 29 Apr 2021 01:00:00 +0200},
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bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YangLQWSL21,
author = {Yuchen Yang and
Gang Li and
Huijun Qian and
Kirk C. Wilhelmsen and
Yin Shen and
Yun Li},
title = {{SMNN:} batch effect correction for single-cell RNA-seq data via supervised
mutual nearest neighbor detection},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa097},
doi = {10.1093/BIB/BBAA097},
timestamp = {Thu, 17 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/YangLQWSL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YangLWMWL21,
author = {Yuning Yang and
Shaochuan Li and
Yunhe Wang and
Zhiqiang Ma and
Ka{-}Chun Wong and
Xiangtao Li},
title = {Identification of haploinsufficient genes from epigenomic data using
deep forest},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa393},
doi = {10.1093/BIB/BBAA393},
timestamp = {Mon, 09 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/YangLWMWL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/YangLXWLYLQL21,
author = {Yuchen Yang and
Gang Li and
Yifang Xie and
Li Wang and
Taylor M. Lagler and
Yingxi Yang and
Jiandong Liu and
Li Qian and
Yun Li},
title = {iSMNN: batch effect correction for single-cell RNA-seq data via iterative
supervised mutual nearest neighbor refinement},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab122},
doi = {10.1093/BIB/BBAB122},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/YangLXWLYLQL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YangPZ0021,
author = {Zhi{-}Kai Yang and
Lingyu Pan and
Yanming Zhang and
Hao Luo and
Feng Gao},
title = {Data-driven identification of SARS-CoV-2 subpopulations using PhenoGraph
and binary-coded genomic data},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab307},
doi = {10.1093/BIB/BBAB307},
timestamp = {Wed, 15 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/YangPZ0021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YangWCHY21,
author = {Jing{-}Fang Yang and
Fan Wang and
Yu Zong Chen and
Ge{-}Fei Hao and
Guangfu Yang},
title = {Erratum to: {LARMD:} integration of bioinformatic resources to profile
ligand-driven protein dynamics with a case on the activation of estrogen
receptor},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {605},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa010},
doi = {10.1093/BIB/BBAA010},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/YangWCHY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YangWKWPCC21,
author = {Yang Yang and
Timothy M. Walker and
Samaneh Kouchaki and
Chenyang Wang and
Timothy E. A Peto and
Derrick W. Crook and
David A. Clifton},
title = {An end-to-end heterogeneous graph attention network for Mycobacterium
tuberculosis drug-resistance prediction},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab299},
doi = {10.1093/BIB/BBAB299},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/YangWKWPCC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YangWYYJNG21,
author = {Jiajun Yang and
Dongyang Wang and
Yanbo Yang and
Wenqian Yang and
Weiwei Jin and
Xiaohui Niu and
Jing Gong},
title = {A systematic comparison of normalization methods for eQTL analysis},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab193},
doi = {10.1093/BIB/BBAB193},
timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/YangWYYJNG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YangWZLW21,
author = {Mengyun Yang and
Gaoyan Wu and
Qichang Zhao and
Yaohang Li and
Jianxin Wang},
title = {Computational drug repositioning based on multi-similarities bilinear
matrix factorization},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa267},
doi = {10.1093/BIB/BBAA267},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/YangWZLW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YangYKZ21,
author = {Mengyuan Yang and
Ke Yiya and
Pora Kim and
Xiaobo Zhou},
title = {ExonSkipAD provides the functional genomic landscape of exon skipping
events in Alzheimer's disease},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa438},
doi = {10.1093/BIB/BBAA438},
timestamp = {Fri, 15 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/YangYKZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YangYLHC21,
author = {Zi{-}Yi Yang and
Zhi{-}Jiang Yang and
Ai{-}Ping Lu and
Tingjun Hou and
Dong{-}Sheng Cao},
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Kuerbannisha Amahong and
Xiuna Sun and
Xichen Lian and
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Youshu Cheng and
Wei Jiang and
Yixuan Ye and
Qiongshi Lu and
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Qingcai Chen and
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journal = {Briefings Bioinform.},
volume = {22},
number = {5},
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Tianhe Chen and
Zongtai Li and
Ao Liu and
Yang Xu and
Yi Gao and
Danfeng Xu},
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Feifei Cui and
Chen Lin and
Lingling Zhao and
Chunyu Wang and
Quan Zou},
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volume = {22},
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Zichun Dai and
Jun Yu and
Ming Xiao},
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journal = {Briefings Bioinform.},
volume = {22},
number = {1},
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year = {2021},
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timestamp = {Fri, 06 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ZhangDYX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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Amy Ferguson and
Grant Robertson and
Muchen Jiang and
Teng Zhang and
Cathie Sudlow and
Keith Smith and
Kristiina Rannikm{\"{a}}e and
Honghan Wu},
title = {Benchmarking network-based gene prioritization methods for cerebral
small vessel disease},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab006},
doi = {10.1093/BIB/BBAB006},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhangFRJZSSRW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangHZD21,
author = {Shihua Zhang and
Xiaolong He and
Rui Zhang and
Wensheng Deng},
title = {LncR2metasta: a manually curated database for experimentally supported
lncRNAs during various cancer metastatic events},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa178},
doi = {10.1093/BIB/BBAA178},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhangHZD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangHZJMW21,
author = {Yuzhao Zhang and
Xibing He and
Jingchen Zhai and
Beihong Ji and
Viet Hoang Man and
Junmei Wang},
title = {In silico binding profile characterization of SARS-CoV-2 spike protein
and its mutants bound to human {ACE2} receptor},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab188},
doi = {10.1093/BIB/BBAB188},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhangHZJMW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangJFK21,
author = {Yu Zhang and
Cangzhi Jia and
Melissa Jane Fullwood and
Chee Keong Kwoh},
title = {DeepCPP: a deep neural network based on nucleotide bias information
and minimum distribution similarity feature selection for {RNA} coding
potential prediction},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {2073--2084},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa039},
doi = {10.1093/BIB/BBAA039},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhangJFK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangJK21,
author = {Yu Zhang and
Cangzhi Jia and
Chee Keong Kwoh},
title = {Predicting the interaction biomolecule types for lncRNA: an ensemble
deep learning approach},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa228},
doi = {10.1093/BIB/BBAA228},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ZhangJK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangJLTWLXLL21,
author = {Mengying Zhang and
Xiyun Jin and
Junyi Li and
Yi Tian and
Qi Wang and
Xinhui Li and
Juan Xu and
Yongsheng Li and
Xia Li},
title = {CeRNASeek: an {R} package for identification and analysis of ceRNA
regulation},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa048},
doi = {10.1093/BIB/BBAA048},
timestamp = {Tue, 18 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhangJLTWLXLL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangLCZL21,
author = {Peng Zhang and
Mingyue Liu and
Ya Cui and
Pan Zheng and
Yang Liu},
title = {Microsatellite instability status differentially associates with intratumoral
immune microenvironment in human cancers},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa180},
doi = {10.1093/BIB/BBAA180},
timestamp = {Sat, 16 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhangLCZL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangLHSZHZW21,
author = {Nan Zhang and
Xizi Luo and
Juanjuan Huang and
Hongyan Song and
Xinyue Zhang and
Honglan Huang and
Shishun Zhao and
Guoqing Wang},
title = {The landscape of different molecular modules in an immune microenvironment
during tuberculosis infection},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab071},
doi = {10.1093/BIB/BBAB071},
timestamp = {Tue, 05 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhangLHSZHZW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangLLG21,
author = {Qiong Zhang and
Mei Luo and
Chun{-}Jie Liu and
An{-}Yuan Guo},
title = {{CCLA:} an accurate method and web server for cancer cell line authentication
using gene expression profiles},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa093},
doi = {10.1093/BIB/BBAA093},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ZhangLLG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangLZZL21,
author = {Yue Zhang and
Jianyuan Lin and
Lianmin Zhao and
Xiangxiang Zeng and
Xiangrong Liu},
title = {A novel antibacterial peptide recognition algorithm based on {BERT}},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab200},
doi = {10.1093/BIB/BBAB200},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ZhangLZZL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangMTG21,
author = {Wei Zhang and
Qiaozhen Meng and
Jijun Tang and
Fei Guo},
title = {Exploring effectiveness of ab-initio protein-protein docking methods
on a novel antibacterial protein complex dataset},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab150},
doi = {10.1093/BIB/BBAB150},
timestamp = {Tue, 12 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhangMTG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangSGZYY21,
author = {Ying Zhang and
Yuxin Song and
Jin Gao and
Hengyu Zhang and
Ning Yang and
Runqing Yang},
title = {Hierarchical mixed-model expedites genome-wide longitudinal association
analysis},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab096},
doi = {10.1093/BIB/BBAB096},
timestamp = {Wed, 22 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhangSGZYY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangSZLYWWXWX21,
author = {Minzhe Zhang and
Thomas Sheffield and
Xiaowei Zhan and
Qiwei Li and
Donghan M. Yang and
Yunguan Wang and
Shidan Wang and
Yang Xie and
Tao Wang and
Guanghua Xiao},
title = {Spatial molecular profiling: platforms, applications and analysis
tools},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa145},
doi = {10.1093/BIB/BBAA145},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ZhangSZLYWWXWX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangWCHLH21,
author = {Qinhu Zhang and
Siguo Wang and
Zhanheng Chen and
Ying He and
Qi Liu and
De{-}Shuang Huang},
title = {Locating transcription factor binding sites by fully convolutional
neural network},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa435},
doi = {10.1093/BIB/BBAA435},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ZhangWCHLH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangWLSLYDLCYL21,
author = {Yangjun Zhang and
Xiaoliang Wu and
Jingzhen Li and
Kui Sun and
Heng Li and
Libin Yan and
Chen Duan and
Haoran Liu and
Ke Chen and
Zhangqun Ye and
Mugen Liu and
Hua Xu},
title = {Comprehensive characterization of alternative splicing in renal cell
carcinoma},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab084},
doi = {10.1093/BIB/BBAB084},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhangWLSLYDLCYL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangWYWYHHC21,
author = {Xiao{-}Chen Zhang and
Chengkun Wu and
Zhi{-}Jiang Yang and
Zhen{-}Xing Wu and
Jia{-}Cai Yi and
Chang{-}Yu Hsieh and
Tingjun Hou and
Dong{-}Sheng Cao},
title = {{MG-BERT:} leveraging unsupervised atomic representation learning
for molecular property prediction},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab152},
doi = {10.1093/BIB/BBAB152},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhangWYWYHHC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangWZL21,
author = {Pengyi Zhang and
Jiangpeng Wu and
Honglin Zhai and
Shuyan Li},
title = {ABCModeller: an automatic data mining tool based on a consistent voting
method with a user-friendly graphical interface},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa247},
doi = {10.1093/BIB/BBAA247},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ZhangWZL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangWZZ021,
author = {Yongqing Zhang and
Zixuan Wang and
Yuanqi Zeng and
Jiliu Zhou and
Quan Zou},
title = {High-resolution transcription factor binding sites prediction improved
performance and interpretability by deep learning method},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab273},
doi = {10.1093/BIB/BBAB273},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhangWZZ021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangXHZCLGWM21,
author = {Jialin Zhang and
Da Xu and
Kaijing Hao and
Yusen Zhang and
Wei Chen and
Jiaguo Liu and
Rui Gao and
Chuanyan Wu and
Yang De Marinis},
title = {{FS-GBDT:} identification multicancer-risk module via a feature selection
algorithm by integrating Fisher score and {GBDT}},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa189},
doi = {10.1093/BIB/BBAA189},
timestamp = {Fri, 28 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhangXHZCLGWM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangXWZCD21,
author = {Wen{-}Ya Zhang and
Junhai Xu and
Jun Wang and
Yuan{-}Ke Zhou and
Wei Chen and
Pu{-}Feng Du},
title = {KNIndex: a comprehensive database of physicochemical properties for
k-tuple nucleotides},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa284},
doi = {10.1093/BIB/BBAA284},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ZhangXWZCD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangYDWCL21,
author = {Zhao{-}Yue Zhang and
Yu{-}He Yang and
Hui Ding and
Dong Wang and
Wei Chen and
Hao Lin},
title = {Design powerful predictor for mRNA subcellular location prediction
in Homo sapiens},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {526--535},
year = {2021},
url = {https://doi.org/10.1093/bib/bbz177},
doi = {10.1093/BIB/BBZ177},
timestamp = {Tue, 23 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhangYDWCL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangYLZZZLCLL21,
author = {Qingfeng Zhang and
Kai Yu and
Shihua Li and
Xiaolong Zhang and
Qi Zhao and
Xia Zhao and
Zekun Liu and
Han Cheng and
Zexian Liu and
Xiaoxing Li},
title = {gutMEGA: a database of the human gut MEtaGenome Atlas},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa082},
doi = {10.1093/BIB/BBAA082},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhangYLZZZLCLL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangZLZCZLWJPL21,
author = {Zheyang Zhang and
Sainan Zhang and
Xin Li and
Zhangxiang Zhao and
Changjing Chen and
Juxuan Zhang and
Mengyue Li and
Zixin Wei and
Wenbin Jiang and
Bo Pan and
Ying Li and
Yixin Liu and
Yingyue Cao and
Wenyuan Zhao and
Yunyan Gu and
Yan Yu and
Qingwei Meng and
Lishuang Qi},
title = {Reference genome and annotation updates lead to contradictory prognostic
predictions in gene expression signatures: a case study of resected
stage {I} lung adenocarcinoma},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa081},
doi = {10.1093/BIB/BBAA081},
timestamp = {Sat, 18 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhangZLZCZLWJPL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangZWWXZLQZ21,
author = {Song Zhang and
Ying Zhou and
Yanan Wang and
Zhengwen Wang and
Qitao Xiao and
Ying Zhang and
Yan Lou and
Yunqing Qiu and
Feng Zhu},
title = {The mechanistic, diagnostic and therapeutic novel nucleic acids for
hepatocellular carcinoma emerging in past score years},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1860--1883},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa023},
doi = {10.1093/BIB/BBAA023},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ZhangZWWXZLQZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangZZXLLZLXL21,
author = {Chunlong Zhang and
Ning Zhao and
Xue Zhang and
Jun Xiao and
Junyi Li and
Dezhong Lv and
Weiwei Zhou and
Yongsheng Li and
Juan Xu and
Xia Li},
title = {SurvivalMeth: a web server to investigate the effect of {DNA} methylation-related
functional elements on prognosis},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa162},
doi = {10.1093/BIB/BBAA162},
timestamp = {Tue, 18 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhangZZXLLZLXL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhaoGBYZHZS21,
author = {Hengqiang Zhao and
Shanshan Gu and
Siqi Bao and
Congcong Yan and
Zicheng Zhang and
Ping Hou and
Meng Zhou and
Jie Sun},
title = {Mechanistically derived patient-level framework for precision medicine
identifies a personalized immune prognostic signature in high-grade
serous ovarian cancer},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa069},
doi = {10.1093/BIB/BBAA069},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhaoGBYZHZS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhaoHC21,
author = {Tianyi Zhao and
Yang Hu and
Liang Cheng},
title = {Deep-DRM: a computational method for identifying disease-related metabolites
based on graph deep learning approaches},
journal = {Briefings Bioinform.},
volume = {22},
number = {4},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa212},
doi = {10.1093/BIB/BBAA212},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ZhaoHC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhaoHTZG21,
author = {Mengyuan Zhao and
Wenying He and
Jijun Tang and
Quan Zou and
Fei Guo},
title = {A comprehensive overview and critical evaluation of gene regulatory
network inference technologies},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab009},
doi = {10.1093/BIB/BBAB009},
timestamp = {Tue, 12 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhaoHTZG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhaoHVZP21,
author = {Tianyi Zhao and
Yang Hu and
Linda R. Valsdottir and
Tianyi Zang and
Jiajie Peng},
title = {Identifying drug-target interactions based on graph convolutional
network and deep neural network},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {2141--2150},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa044},
doi = {10.1093/BIB/BBAA044},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhaoHVZP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhaoKWLY21,
author = {Yongxin Zhao and
Zheng Kuang and
Ying Wang and
Lei Li and
Xiaozeng Yang},
title = {MicroRNA annotation in plants: current status and challenges},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab075},
doi = {10.1093/BIB/BBAB075},
timestamp = {Thu, 23 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhaoKWLY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhaoLZWLZPY21,
author = {Tianyi Zhao and
Jinxin Liu and
Xi Zeng and
Wei Wang and
Sheng Li and
Tianyi Zang and
Jiajie Peng and
Yang Yang},
title = {Prediction and collection of protein-metabolite interactions},
journal = {Briefings Bioinform.},
volume = {22},
number = {5},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab014},
doi = {10.1093/BIB/BBAB014},
timestamp = {Wed, 22 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhaoLZWLZPY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhaoSLW21,
author = {Sendong Zhao and
Chang Su and
Zhiyong Lu and
Fei Wang},
title = {Recent advances in biomedical literature mining},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa057},
doi = {10.1093/BIB/BBAA057},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ZhaoSLW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhaoWC21,
author = {Yan Zhao and
Chun{-}Chun Wang and
Xing Chen},
title = {Microbes and complex diseases: from experimental results to computational
models},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa158},
doi = {10.1093/BIB/BBAA158},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhaoWC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhaoWMXYCLHC21,
author = {Yue Zhao and
Xiang{-}Gui Wang and
Zhong{-}Ye Ma and
Guo{-}Li Xiong and
Zhi{-}Jiang Yang and
Yan Cheng and
Ai{-}Ping Lu and
Zhi{-}Jun Huang and
Dong{-}Sheng Cao},
title = {Systematic comparison of ligand-based and structure-based virtual
screening methods on poly (ADP-ribose) polymerase-1 inhibitors},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab135},
doi = {10.1093/BIB/BBAB135},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhaoWMXYCLHC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhaoYWCZHSDCWZG21,
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bibsource = {dblp computer science bibliography, https://dblp.org}
}
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timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
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bibsource = {dblp computer science bibliography, https://dblp.org}
}
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author = {Lei Zheng and
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Lei Yang and
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bibsource = {dblp computer science bibliography, https://dblp.org}
}
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Xiangyu Tang and
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Jianzhi Zhou and
Shan Jiang and
Ying Wan and
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title = {{TIPS:} trajectory inference of pathway significance through pseudotime
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volume = {22},
number = {5},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Shuangjia Zheng and
Jiahua Rao and
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biburl = {https://dblp.org/rec/journals/bib/ZhengRSZXFYN21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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biburl = {https://dblp.org/rec/journals/bib/ZhengSFYYGWJGQZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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bibsource = {dblp computer science bibliography, https://dblp.org}
}
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biburl = {https://dblp.org/rec/journals/bib/ZhengXCZYYHXWH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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biburl = {https://dblp.org/rec/journals/bib/ZhengXZWHCSZZLL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhongSXPZWW21,
author = {Jiancheng Zhong and
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biburl = {https://dblp.org/rec/journals/bib/ZhongSXPZWW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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number = {6},
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timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ZhouCZZY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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Jianing Gao and
Huan Zhang and
Daren Zhao and
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timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZhouGZZLISZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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author = {Kaiyin Zhou and
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biburl = {https://dblp.org/rec/journals/bib/ZhouWCKMSMX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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author = {Meng Zhou and
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volume = {22},
number = {3},
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biburl = {https://dblp.org/rec/journals/bib/ZhouZBHYSS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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author = {Yi{-}Heng Zhu and
Jun Hu and
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timestamp = {Wed, 27 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ZhuHGLSZY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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author = {Mo Zhu and
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number = {1},
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biburl = {https://dblp.org/rec/journals/bib/ZhuKN21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhuLXASJ21,
author = {Yan Zhu and
Fuyi Li and
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number = {4},
year = {2021},
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biburl = {https://dblp.org/rec/journals/bib/ZhuLXASJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhuWZZ021,
author = {Chi{-}Chi Zhu and
Chun{-}Chun Wang and
Yan Zhao and
Mingcheng Zuo and
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journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
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timestamp = {Wed, 15 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ZhuWZZ021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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author = {Nansu Zong and
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volume = {22},
number = {1},
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biburl = {https://dblp.org/rec/journals/bib/ZongWYWHL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Meng Zou and
Zhana Duren and
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Henry Li and
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volume = {22},
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timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZouDYLHWW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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Yuejie Zhu and
Yaohang Li and
Fang{-}Xiang Wu and
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timestamp = {Tue, 05 Oct 2021 01:00:00 +0200},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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year = {2021},
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timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ZuoC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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journal = {Briefings Bioinform.},
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number = {2},
pages = {800--811},
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timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ZuoCOX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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