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@article{DBLP:journals/bib/AhsenWS11, author = {Nicolas von Ahsen and Carl T. Wittwer and Ekkehard Sch{\"{u}}tz}, title = {Monovalent and divalent salt correction algorithms for \emph{T}\({}_{\mbox{m}}\) prediction - recommendations for Primer3 usage}, journal = {Briefings Bioinform.}, volume = {12}, number = {5}, pages = {514--517}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq081}, doi = {10.1093/BIB/BBQ081}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/AhsenWS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/AndronisSVDP11, author = {Christos Andronis and Anuj Sharma and Vassilis Virvilis and Spyros Deftereos and Aris Persidis}, title = {Literature mining, ontologies and information visualization for drug repurposing}, journal = {Briefings Bioinform.}, volume = {12}, number = {4}, pages = {357--368}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr005}, doi = {10.1093/BIB/BBR005}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/AndronisSVDP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Azuaje11, author = {Francisco Azuaje}, title = {Computational discrete models of tissue growth and regeneration}, journal = {Briefings Bioinform.}, volume = {12}, number = {1}, pages = {64--77}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq017}, doi = {10.1093/BIB/BBQ017}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/Azuaje11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/BarashC11, author = {Danny Barash and Alexander Churkin}, title = {Mutational analysis in RNAs: comparing programs for {RNA} deleterious mutation prediction}, journal = {Briefings Bioinform.}, volume = {12}, number = {2}, pages = {104--114}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq059}, doi = {10.1093/BIB/BBQ059}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/BarashC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/BhagwatY11, author = {Medha Bhagwat and Lynn Young}, title = {Bioinformatics.Charlie Hodgman, Andrew French and David Westhead Instant}, journal = {Briefings Bioinform.}, volume = {12}, number = {1}, pages = {78--79}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq075}, doi = {10.1093/BIB/BBQ075}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/BhagwatY11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/BoeckmannRXD11, author = {Brigitte Boeckmann and Marc Robinson{-}Rechavi and Ioannis Xenarios and Christophe Dessimoz}, title = {Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees}, journal = {Briefings Bioinform.}, volume = {12}, number = {5}, pages = {423--435}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr034}, doi = {10.1093/BIB/BBR034}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/BoeckmannRXD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Boulesteix11, author = {Anne{-}Laure Boulesteix}, title = {Editorial}, journal = {Briefings Bioinform.}, volume = {12}, number = {3}, pages = {187--188}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr027}, doi = {10.1093/BIB/BBR027}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/Boulesteix11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/BoulesteixS11, author = {Anne{-}Laure Boulesteix and Willi Sauerbrei}, title = {Added predictive value of high-throughput molecular data to clinical data and its validation}, journal = {Briefings Bioinform.}, volume = {12}, number = {3}, pages = {215--229}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq085}, doi = {10.1093/BIB/BBQ085}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/BoulesteixS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/CalleU11, author = {Malu Luz Calle and V{\'{\i}}ctor Urrea}, title = {Letter to the Editor: Stability of Random Forest importance measures}, journal = {Briefings Bioinform.}, volume = {12}, number = {1}, pages = {86--89}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq011}, doi = {10.1093/BIB/BBQ011}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/CalleU11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/CastaldiDI11, author = {Peter J. Castaldi and Issa J. Dahabreh and John P. A. Ioannidis}, title = {An empirical assessment of validation practices for molecular classifiers}, journal = {Briefings Bioinform.}, volume = {12}, number = {3}, pages = {189--202}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq073}, doi = {10.1093/BIB/BBQ073}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/CastaldiDI11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/ChaventLKBNEB11, author = {Matthieu Chavent and Bruno L{\'{e}}vy and Michael Krone and Katrin Bidmon and Jean{-}Philippe Nomine and Thomas Ertl and Marc Baaden}, title = {GPU-powered tools boost molecular visualization}, journal = {Briefings Bioinform.}, volume = {12}, number = {6}, pages = {689--701}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq089}, doi = {10.1093/BIB/BBQ089}, timestamp = {Thu, 15 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/ChaventLKBNEB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/CorradaVMBM11, author = {Dario Corrada and Federica Viti and Ivan Merelli and Cristina Battaglia and Luciano Milanesi}, title = {myMIR: a genome-wide microRNA targets identification and annotation tool}, journal = {Briefings Bioinform.}, volume = {12}, number = {6}, pages = {588--600}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr062}, doi = {10.1093/BIB/BBR062}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/CorradaVMBM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/DaiZZ11, author = {Xinbin Dai and Zhaohong Zhuang and Patrick Xuechun Zhao}, title = {Computational analysis of miRNA targets in plants: current status and challenges}, journal = {Briefings Bioinform.}, volume = {12}, number = {2}, pages = {115--121}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq065}, doi = {10.1093/BIB/BBQ065}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/DaiZZ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/DelgadoRMSM11, author = {Ismael Navas{-}Delgado and Alejandro Real{-}Chicharro and Miguel Angel Medina and Francisca S{\'{a}}nchez{-}Jim{\'{e}}nez and Jos{\'{e}} Francisco Aldana Montes}, title = {Social pathway annotation: extensions of the systems biology metabolic modelling assistant}, journal = {Briefings Bioinform.}, volume = {12}, number = {6}, pages = {576--587}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq061}, doi = {10.1093/BIB/BBQ061}, timestamp = {Wed, 15 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/DelgadoRMSM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Dessimoz11, author = {Christophe Dessimoz}, title = {Editorial: Orthology and applications}, journal = {Briefings Bioinform.}, volume = {12}, number = {5}, pages = {375--376}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr057}, doi = {10.1093/BIB/BBR057}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/Dessimoz11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/DessimozZMQMK11, author = {Christophe Dessimoz and Stefan Zoller and Tereza Manousaki and Huan Qiu and Axel Meyer and Shigehiro Kuraku}, title = {Comparative genomics approach to detecting split-coding regions in a low-coverage genome: lessons from the chimaera \emph{Callorhinchus milii} (Holocephali, Chondrichthyes)}, journal = {Briefings Bioinform.}, volume = {12}, number = {5}, pages = {474--484}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr038}, doi = {10.1093/BIB/BBR038}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/DessimozZMQMK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Dewey11, author = {Colin N. Dewey}, title = {Positional orthology: putting genomic evolutionary relationships into context}, journal = {Briefings Bioinform.}, volume = {12}, number = {5}, pages = {401--412}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr040}, doi = {10.1093/BIB/BBR040}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/Dewey11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Dougherty11, author = {Edward R. Dougherty}, title = {Validation of gene regulatory networks: scientific and inferential}, journal = {Briefings Bioinform.}, volume = {12}, number = {3}, pages = {245--252}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq078}, doi = {10.1093/BIB/BBQ078}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/Dougherty11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/DoyonRDB11, author = {Jean{-}Philippe Doyon and Vincent Ranwez and Vincent Daubin and Vincent Berry}, title = {Models, algorithms and programs for phylogeny reconciliation}, journal = {Briefings Bioinform.}, volume = {12}, number = {5}, pages = {392--400}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr045}, doi = {10.1093/BIB/BBR045}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/DoyonRDB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/DudleyDB11, author = {Joel Dudley and Tarangini Deshpande and Atul J. Butte}, title = {Exploiting drug-disease relationships for computational drug repositioning}, journal = {Briefings Bioinform.}, volume = {12}, number = {4}, pages = {303--311}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr013}, doi = {10.1093/BIB/BBR013}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/DudleyDB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/FangC11, author = {Zhide Fang and Xiangqin Cui}, title = {Design and validation issues in RNA-seq experiments}, journal = {Briefings Bioinform.}, volume = {12}, number = {3}, pages = {280--287}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr004}, doi = {10.1093/BIB/BBR004}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/FangC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/ForslundSTS11, author = {Kristoffer Forslund and Fabian Schreiber and Nattaphon Thanintorn and Erik L. L. Sonnhammer}, title = {OrthoDisease: tracking disease gene orthologs across 100 species}, journal = {Briefings Bioinform.}, volume = {12}, number = {5}, pages = {463--473}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr024}, doi = {10.1093/BIB/BBR024}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/ForslundSTS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Fuellen11, author = {Georg Fuellen}, title = {Evolution of gene regulation - on the road towards computational inferences}, journal = {Briefings Bioinform.}, volume = {12}, number = {2}, pages = {122--131}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq060}, doi = {10.1093/BIB/BBQ060}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/Fuellen11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/GadaletaLC11, author = {Emanuela Gadaleta and Nicholas R. Lemoine and Claude Chelala}, title = {Online resources of cancer data: barriers, benefits and lessons}, journal = {Briefings Bioinform.}, volume = {12}, number = {1}, pages = {52--63}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq010}, doi = {10.1093/BIB/BBQ010}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/GadaletaLC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/GaudetLLT11, author = {Pascale Gaudet and Michael S. Livstone and Suzanna E. Lewis and Paul D. Thomas}, title = {Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium}, journal = {Briefings Bioinform.}, volume = {12}, number = {5}, pages = {449--462}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr042}, doi = {10.1093/BIB/BBR042}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/GaudetLLT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/GharibR11, author = {Walid H. Gharib and Marc Robinson{-}Rechavi}, title = {When orthologs diverge between human and mouse}, journal = {Briefings Bioinform.}, volume = {12}, number = {5}, pages = {436--441}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr031}, doi = {10.1093/BIB/BBR031}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/GharibR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/HauptS11, author = {V. Joachim Haupt and Michael Schroeder}, title = {Old friends in new guise: repositioning of known drugs with structural bioinformatics}, journal = {Briefings Bioinform.}, volume = {12}, number = {4}, pages = {312--326}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr011}, doi = {10.1093/BIB/BBR011}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/HauptS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/HothornL11, author = {Torsten Hothorn and Friedrich Leisch}, title = {Case studies in reproducibility}, journal = {Briefings Bioinform.}, volume = {12}, number = {3}, pages = {288--300}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq084}, doi = {10.1093/BIB/BBQ084}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/HothornL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/HubiszPS11, author = {Melissa J. Hubisz and Katherine S. Pollard and Adam C. Siepel}, title = {{PHAST} and {RPHAST:} phylogenetic analysis with space/time models}, journal = {Briefings Bioinform.}, volume = {12}, number = {1}, pages = {41--51}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq072}, doi = {10.1093/BIB/BBQ072}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/HubiszPS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Huerta-CepasDHG11, author = {Jaime Huerta{-}Cepas and Joaqu{\'{\i}}n Dopazo and Martijn A. Huynen and Toni Gabald{\'{o}}n}, title = {Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplication}, journal = {Briefings Bioinform.}, volume = {12}, number = {5}, pages = {442--448}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr022}, doi = {10.1093/BIB/BBR022}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/Huerta-CepasDHG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/JelierGHSDH11, author = {Rob Jelier and Jelle J. Goeman and Kristina M. Hettne and Martijn J. Schuemie and Johan T. den Dunnen and Peter A. C. 't Hoen}, title = {Literature-aided interpretation of gene expression data with the weighted global test}, journal = {Briefings Bioinform.}, volume = {12}, number = {5}, pages = {518--529}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq082}, doi = {10.1093/BIB/BBQ082}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/JelierGHSDH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/KalaimathySK11, author = {Singaravelu Kalaimathy and Ramanathan Sowdhamini and Karuppiah Kanagarajadurai}, title = {Critical assessment of structure-based sequence alignment methods at distant relationships}, journal = {Briefings Bioinform.}, volume = {12}, number = {2}, pages = {163--175}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq025}, doi = {10.1093/BIB/BBQ025}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/KalaimathySK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Kim11, author = {Seonho Kim}, title = {Knowledge-Based Bioinformatics - From analysis to interpretation.Edited by Gil Alterovitz and Marco Ramoni}, journal = {Briefings Bioinform.}, volume = {12}, number = {1}, pages = {82--85}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq070}, doi = {10.1093/BIB/BBQ070}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/Kim11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/KlingstromP11, author = {Tomas Klingstr{\"{o}}m and Dariusz Plewczynski}, title = {Protein-protein interaction and pathway databases, a graphical review}, journal = {Briefings Bioinform.}, volume = {12}, number = {6}, pages = {702--713}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq064}, doi = {10.1093/BIB/BBQ064}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/KlingstromP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Konig11, author = {Inke R. K{\"{o}}nig}, title = {Validation in Genetic Association Studies}, journal = {Briefings Bioinform.}, volume = {12}, number = {3}, pages = {253--258}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq074}, doi = {10.1093/BIB/BBQ074}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/Konig11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Koonin11, author = {Eugene V. Koonin}, title = {Obituary: Walter Fitch and the orthology paradigm}, journal = {Briefings Bioinform.}, volume = {12}, number = {5}, pages = {377--378}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr058}, doi = {10.1093/BIB/BBR058}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/Koonin11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/KristensenWMK11, author = {David M. Kristensen and Yuri I. Wolf and Arcady R. Mushegian and Eugene V. Koonin}, title = {Computational methods for Gene Orthology inference}, journal = {Briefings Bioinform.}, volume = {12}, number = {5}, pages = {379--391}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr030}, doi = {10.1093/BIB/BBR030}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/KristensenWMK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/LedergerberD11, author = {Christian Ledergerber and Christophe Dessimoz}, title = {Base-calling for next-generation sequencing platforms}, journal = {Briefings Bioinform.}, volume = {12}, number = {5}, pages = {489--497}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq077}, doi = {10.1093/BIB/BBQ077}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/LedergerberD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/LiewLY11, author = {Alan Wee{-}Chung Liew and Ngai{-}Fong Law and Hong Yan}, title = {Missing value imputation for gene expression data: computational techniques to recover missing data from available information}, journal = {Briefings Bioinform.}, volume = {12}, number = {5}, pages = {498--513}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq080}, doi = {10.1093/BIB/BBQ080}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/LiewLY11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Lockstone11, author = {Helen E. Lockstone}, title = {Exon array data analysis using Affymetrix power tools and {R} statistical software}, journal = {Briefings Bioinform.}, volume = {12}, number = {6}, pages = {634--644}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq086}, doi = {10.1093/BIB/BBQ086}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/Lockstone11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/LourencoCRFR11, author = {An{\'{a}}lia Louren{\c{c}}o and S{\'{o}}nia Carneiro and Miguel Rocha and Eug{\'{e}}nio C. Ferreira and Isabel Rocha}, title = {Challenges in integrating \emph{Escherichia coli} molecular biology data}, journal = {Briefings Bioinform.}, volume = {12}, number = {2}, pages = {91--103}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq067}, doi = {10.1093/BIB/BBQ067}, timestamp = {Wed, 12 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/LourencoCRFR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/MaD11, author = {Shuangge Ma and Ying Dai}, title = {Principal component analysis based methods in bioinformatics studies}, journal = {Briefings Bioinform.}, volume = {12}, number = {6}, pages = {714--722}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq090}, doi = {10.1093/BIB/BBQ090}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/MaD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/MaS11, author = {Shuangge Ma and Xiao Song}, title = {Ranking prognosis markers in cancer genomic studies}, journal = {Briefings Bioinform.}, volume = {12}, number = {1}, pages = {33--40}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq069}, doi = {10.1093/BIB/BBQ069}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/MaS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/MansmannJ11, author = {Ulrich Mansmann and Vindi Jurinovic}, title = {Biological feature validation of estimated gene interaction networks from microarray data: a case study on {MYC} in lymphomas}, journal = {Briefings Bioinform.}, volume = {12}, number = {3}, pages = {230--244}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr007}, doi = {10.1093/BIB/BBR007}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/MansmannJ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/MayneP11, author = {Shannon L. N. Mayne and Hugh{-}George Patterton}, title = {Bioinformatics tools for the structural elucidation of multi-subunit protein complexes by mass spectrometric analysis of protein-protein cross-links}, journal = {Briefings Bioinform.}, volume = {12}, number = {6}, pages = {660--671}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq087}, doi = {10.1093/BIB/BBQ087}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/MayneP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/MengSC11, author = {Yijun Meng and Chaogang Shao and Ming Chen}, title = {Toward microRNA-mediated gene regulatory networks in plants}, journal = {Briefings Bioinform.}, volume = {12}, number = {6}, pages = {645--659}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq091}, doi = {10.1093/BIB/BBQ091}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/MengSC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/MoriaudRACSJD11, author = {Fabrice Moriaud and St{\'{e}}phane B. Richard and Stewart A. Adcock and Laetitia Chanas{-}Martin and Jean{-}S{\'{e}}bastien Surgand and Marouane Ben Jelloul and Fran{\c{c}}ois Delfaud}, title = {Identify drug repurposing candidates by mining the Protein Data Bank}, journal = {Briefings Bioinform.}, volume = {12}, number = {4}, pages = {336--340}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr017}, doi = {10.1093/BIB/BBR017}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/MoriaudRACSJD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Nicodemus11, author = {Kristin K. Nicodemus}, title = {Letter to the Editor: On the stability and ranking of predictors from random forest variable importance measures}, journal = {Briefings Bioinform.}, volume = {12}, number = {4}, pages = {369--373}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr016}, doi = {10.1093/BIB/BBR016}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/Nicodemus11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/PinzonRGBR11, author = {Andr{\'{e}}s Pinz{\'{o}}n Velasco and Luis Miguel Rodriguez{-}Rojas and Andr{\'{e}}s Gonz{\'{a}}lez and Adriana Bernal and Silvia Restrepo}, title = {Targeted metabolic reconstruction: a novel approach for the characterization of plant-pathogen interactions}, journal = {Briefings Bioinform.}, volume = {12}, number = {2}, pages = {151--162}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq009}, doi = {10.1093/BIB/BBQ009}, timestamp = {Sat, 12 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/PinzonRGBR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/PlessisSD11, author = {Louis du Plessis and Nives Skunca and Christophe Dessimoz}, title = {The what, where, how and why of gene ontology - a primer for bioinformaticians}, journal = {Briefings Bioinform.}, volume = {12}, number = {6}, pages = {723--735}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr002}, doi = {10.1093/BIB/BBR002}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/PlessisSD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/RibecaV11, author = {Paolo Ribeca and Gabriel Valiente}, title = {Computational challenges of sequence classification in microbiomic data}, journal = {Briefings Bioinform.}, volume = {12}, number = {6}, pages = {614--625}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr019}, doi = {10.1093/BIB/BBR019}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/RibecaV11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/RomanoGP11, author = {Paolo Romano and Rosalba Giugno and Alfredo Pulvirenti}, title = {Editorial}, journal = {Briefings Bioinform.}, volume = {12}, number = {6}, pages = {547--548}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr068}, doi = {10.1093/BIB/BBR068}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/RomanoGP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/RomanoGP11a, author = {Paolo Romano and Rosalba Giugno and Alfredo Pulvirenti}, title = {Tools and collaborative environments for bioinformatics research}, journal = {Briefings Bioinform.}, volume = {12}, number = {6}, pages = {549--561}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr055}, doi = {10.1093/BIB/BBR055}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/RomanoGP11a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/RotherRPB11, author = {Magdalena Rother and Kristian Rother and Tomasz Puton and Janusz M. Bujnicki}, title = {{RNA} tertiary structure prediction with ModeRNA}, journal = {Briefings Bioinform.}, volume = {12}, number = {6}, pages = {601--613}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr050}, doi = {10.1093/BIB/BBR050}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/RotherRPB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/RoyTMJM11, author = {Pascal Roy and Caroline Truntzer and Delphine Maucort{-}Boulch and Thomas Jouve and Nicolas Molinari}, title = {Protein mass spectra data analysis for clinical biomarker discovery: a global review}, journal = {Briefings Bioinform.}, volume = {12}, number = {2}, pages = {176--186}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq019}, doi = {10.1093/BIB/BBQ019}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/RoyTMJM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/SanseauK11, author = {Philippe Sanseau and Jacob Koehler}, title = {Editorial: Computational methods for drug repurposing}, journal = {Briefings Bioinform.}, volume = {12}, number = {4}, pages = {301--302}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr047}, doi = {10.1093/BIB/BBR047}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/SanseauK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/SardanaZZGYJ11, author = {Divya Sardana and Cheng Zhu and Minlu Zhang and Ranga Chandra Gudivada and Lun Yang and Anil G. Jegga}, title = {Drug repositioning for orphan diseases}, journal = {Briefings Bioinform.}, volume = {12}, number = {4}, pages = {346--356}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr021}, doi = {10.1093/BIB/BBR021}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/SardanaZZGYJ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/SchmittMSS11, author = {Thomas Schmitt and David N. Messina and Fabian Schreiber and Erik L. L. Sonnhammer}, title = {Letter to the Editor: SeqXML and OrthoXML: standards for sequence and orthology information}, journal = {Briefings Bioinform.}, volume = {12}, number = {5}, pages = {485--488}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr025}, doi = {10.1093/BIB/BBR025}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/SchmittMSS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/SimonSLM11, author = {Richard M. Simon and Jyothi Subramanian and Ming{-}Chung Li and Supriya Menezes}, title = {Using cross-validation to evaluate predictive accuracy of survival risk classifiers based on high-dimensional data}, journal = {Briefings Bioinform.}, volume = {12}, number = {3}, pages = {203--214}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr001}, doi = {10.1093/BIB/BBR001}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/SimonSLM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/SjolanderDSS11, author = {Kimmen Sj{\"{o}}lander and Ruchira S. Datta and Yaoqing Shen and Grant M. Shoffner}, title = {Ortholog identification in the presence of domain architecture rearrangement}, journal = {Briefings Bioinform.}, volume = {12}, number = {5}, pages = {413--422}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr036}, doi = {10.1093/BIB/BBR036}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/SjolanderDSS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/SplendianiGACSB11, author = {Andrea Splendiani and Michaela G{\"{u}}ndel and Jonathan M. Austyn and Duccio Cavalieri and Ciro Scognamiglio and Marco Brandizi}, title = {Knowledge sharing and collaboration in translational research, and the {DC-THERA} Directory}, journal = {Briefings Bioinform.}, volume = {12}, number = {6}, pages = {562--575}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr051}, doi = {10.1093/BIB/BBR051}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/SplendianiGACSB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/StamatakisI11, author = {Alexandros Stamatakis and Fernando Izquierdo{-}Carrasco}, title = {Result verification, code verification and computation of support values in phylogenetics}, journal = {Briefings Bioinform.}, volume = {12}, number = {3}, pages = {270--279}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq079}, doi = {10.1093/BIB/BBQ079}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/StamatakisI11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/SucaetD11, author = {Yves Sucaet and Taru Deva}, title = {Evolution and applications of plant pathway resources and databases}, journal = {Briefings Bioinform.}, volume = {12}, number = {5}, pages = {530--544}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq083}, doi = {10.1093/BIB/BBQ083}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/SucaetD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Swamidass11, author = {Sanjay Joshua Swamidass}, title = {Mining small-molecule screens to repurpose drugs}, journal = {Briefings Bioinform.}, volume = {12}, number = {4}, pages = {327--335}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr028}, doi = {10.1093/BIB/BBR028}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/Swamidass11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/SzalkowskiS11, author = {Adam M. Szalkowski and Christoph D. Schmid}, title = {Rapid innovation in ChIP-seq peak-calling algorithms is outdistancing benchmarking efforts}, journal = {Briefings Bioinform.}, volume = {12}, number = {6}, pages = {626--633}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq068}, doi = {10.1093/BIB/BBQ068}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/SzalkowskiS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/ThompsonAM11, author = {John R. Thompson and John R. Attia and Cosetta Minelli}, title = {The meta-analysis of genome-wide association studies}, journal = {Briefings Bioinform.}, volume = {12}, number = {3}, pages = {259--269}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr020}, doi = {10.1093/BIB/BBR020}, timestamp = {Mon, 27 Mar 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/ThompsonAM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/TrancheventCNMCM11, author = {L{\'{e}}on{-}Charles Tranchevent and Francisco Bonachela Capdevila and Daniela Nitsch and Bart De Moor and Patrick De Causmaecker and Yves Moreau}, title = {A guide to web tools to prioritize candidate genes}, journal = {Briefings Bioinform.}, volume = {12}, number = {1}, pages = {22--32}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq007}, doi = {10.1093/BIB/BBQ007}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/TrancheventCNMCM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/WielPWY11, author = {Mark A. van de Wiel and Franck Picard and Wessel N. van Wieringen and Bauke Ylstra}, title = {Preprocessing and downstream analysis of microarray {DNA} copy number profiles}, journal = {Briefings Bioinform.}, volume = {12}, number = {1}, pages = {10--21}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq004}, doi = {10.1093/BIB/BBQ004}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/WielPWY11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/WittekM11, author = {Adam Wittek and Karol Miller}, title = {Letter to the Editor: Current progress in patient-specific modeling by Neal and Kerckhoffs {(2010)}}, journal = {Briefings Bioinform.}, volume = {12}, number = {5}, pages = {545--546}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr046}, doi = {10.1093/BIB/BBR046}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/WittekM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/WongLLH11, author = {Carol Wong and Yuran Li and Chih Lee and Chun{-}Hsi Huang}, title = {Ensemble learning algorithms for classification of mtDNA into haplogroups}, journal = {Briefings Bioinform.}, volume = {12}, number = {1}, pages = {1--9}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq008}, doi = {10.1093/BIB/BBQ008}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/WongLLH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/XiCQW11, author = {Yanping Xi and Yi{-}Ping Phoebe Chen and Chen Qian and Fei Wang}, title = {Comparative study of computational methods to detect the correlated reaction sets in biochemical networks}, journal = {Briefings Bioinform.}, volume = {12}, number = {2}, pages = {132--150}, year = {2011}, url = {https://doi.org/10.1093/bib/bbp068}, doi = {10.1093/BIB/BBP068}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/XiCQW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/XuC11, author = {Kui Xu and Timothy R. Cot{\'{e}}}, title = {Database identifies FDA-approved drugs with potential to be repurposed for treatment of orphan diseases}, journal = {Briefings Bioinform.}, volume = {12}, number = {4}, pages = {341--345}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr006}, doi = {10.1093/BIB/BBR006}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/XuC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Zhang11, author = {Xiang Zhang}, title = {Proteome Bioinformatics. Edited by Simon J. Hubbard and Andrew R. Jones,}, journal = {Briefings Bioinform.}, volume = {12}, number = {1}, pages = {80--81}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq076}, doi = {10.1093/BIB/BBQ076}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/Zhang11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/ZhangZCKMBSK11, author = {Hua Zhang and Tuo Zhang and Ke Chen and Kanaka Durga Kedarisetti and Marcin J. Mizianty and Qingbo Bao and Wojciech Stach and Lukasz A. Kurgan}, title = {Critical assessment of high-throughput standalone methods for secondary structure prediction}, journal = {Briefings Bioinform.}, volume = {12}, number = {6}, pages = {672--688}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq088}, doi = {10.1093/BIB/BBQ088}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/ZhangZCKMBSK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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