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@inproceedings{DBLP:conf/swat4ls/ArangurenFA11,
  author    = {Mikel Ega{\~{n}}a Aranguren and
               Jesualdo Tom{\'{a}}s Fern{\'{a}}ndez{-}Breis and
               Erick Antezana},
  title     = {OPPL-Galaxy: enhancing ontology exploitation in galaxy with {OPPL}},
  booktitle = {{SWAT4LS}},
  pages     = {12--19},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/BeckTB11,
  author    = {Tim Beck and
               Gudmundur A. Thorisson and
               Anthony J. Brookes},
  title     = {Applying ontologies and exploring nanopublishing in a genome-wide
               association study database},
  booktitle = {{SWAT4LS}},
  pages     = {1--2},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/CastroG11,
  author    = {Leyla Jael Garc{\'{\i}}a{-}Castro and
               Alexander Garc{\'{\i}}a Castro},
  title     = {Tagsty: augmented knowledge from community-based annotations on protein
               sequences},
  booktitle = {{SWAT4LS}},
  pages     = {22--23},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/CatalanLAS11,
  author    = {Mar{\'{\i}}a P{\'{e}}rez Catal{\'{a}}n and
               Rafael Berlanga Llavori and
               Mar{\'{\i}}a Jos{\'{e}} Aramburu and
               Ismael Sanz},
  title     = {Exploiting text-rich descriptions for faceted discovery of web resources},
  booktitle = {{SWAT4LS}},
  pages     = {98--105},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/ChichesterBMM11,
  author    = {Christine Chichester and
               Kees Burger and
               Hailiang Mei and
               Barend Mons},
  title     = {Supporting nanopublication provenance: {PMID2DOI} converter},
  booktitle = {{SWAT4LS}},
  pages     = {3},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/CoxT11,
  author    = {Robert Sidney Cox III and
               Tetsuro Toyoda},
  title     = {Genome design with the semantic web},
  booktitle = {{SWAT4LS}},
  pages     = {4--5},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/DeusZMFPMDMARM11,
  author    = {Helena F. Deus and
               Jun Zhao and
               Jim McCusker and
               Ronan Fox and
               Eric Prud'hommeaux and
               James Malone and
               Sudeshna Das and
               Michael Miller and
               Tomasz Adamusiak and
               Philippe Rocca{-}Serra and
               M. Scott Marshall},
  title     = {Translating standards into practice: one semantic web {API} for gene
               expression},
  booktitle = {{SWAT4LS}},
  pages     = {6--7},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/Diallo11,
  author    = {Gayo Diallo},
  title     = {Towards decentralized and cooperative repositories of distributed
               ontologies},
  booktitle = {{SWAT4LS}},
  pages     = {8--9},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/Garcia-GodoyDM11,
  author    = {Mar{\'{\i}}a Jes{\'{u}}s Garc{\'{\i}}a{-}Godoy and
               Ismael Navas Delgado and
               Jos{\'{e}} Francisco Aldana Montes},
  title     = {Bioqueries: a social community sharing experiences while querying
               biological linked data},
  booktitle = {{SWAT4LS}},
  pages     = {24--31},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/GarciaC11,
  author    = {Alexander Garc{\'{\i}}a Castro and
               Leyla Jael Garc{\'{\i}}a{-}Castro},
  title     = {A translational model for representing research articles},
  booktitle = {{SWAT4LS}},
  pages     = {20--21},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/GiffordT11,
  author    = {David Gifford and
               Tetsuro Toyoda},
  title     = {LinkData.org supports Japan's {LOD} challenge},
  booktitle = {{SWAT4LS}},
  pages     = {32--33},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/Gooch11,
  author    = {Phil Gooch},
  title     = {Systematic identification and correction of spelling errors in the
               foundational model of anatomy},
  booktitle = {{SWAT4LS}},
  pages     = {34--35},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/HettneSKBGBRC11,
  author    = {Kristina M. Hettne and
               Stian Soiland{-}Reyes and
               Graham Klyne and
               Khalid Belhajjame and
               Matthew Gamble and
               Sean Bechhofer and
               Marco Roos and
               {\'{O}}scar Corcho},
  title     = {Workflow forever: semantic web semantic models and tools for preserving
               and digitally publishing computational experiments},
  booktitle = {{SWAT4LS}},
  pages     = {36--37},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/JiangSC11,
  author    = {Guoqian Jiang and
               Harold R. Solbrig and
               Christopher G. Chute},
  title     = {Using semantic web technology to support {ICD-11} textual definitions
               authoring},
  booktitle = {{SWAT4LS}},
  pages     = {38--44},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/Jimenez-RuizGZ11,
  author    = {Ernesto Jim{\'{e}}nez{-}Ruiz and
               Bernardo Cuenca Grau and
               Yujiao Zhou},
  title     = {LogMap 2.0: towards logic-based, scalable and interactive ontology
               matching},
  booktitle = {{SWAT4LS}},
  pages     = {45--46},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/KobayashiT11,
  author    = {Norio Kobayashi and
               Tetsuro Toyoda},
  title     = {BioSPARQL: ontology-based smart building of {SPARQL} queries for biological
               linked open data},
  booktitle = {{SWAT4LS}},
  pages     = {47--49},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/KontonasiosKKA11,
  author    = {Georgios Kontonatsios and
               Ioannis Korkontzelos and
               BalaKrishna Kolluru and
               Sophia Ananiadou},
  title     = {Adding text mining workflows as web services to the BioCatalogue},
  booktitle = {{SWAT4LS}},
  pages     = {50--57},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/LambrixL11,
  author    = {Patrick Lambrix and
               Qiang Liu},
  title     = {Debugging is-a structure in networked taxonomies},
  booktitle = {{SWAT4LS}},
  pages     = {58--65},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/LopesO11,
  author    = {Pedro Lopes and
               Jos{\'{e}} Lu{\'{\i}}s Oliveira},
  title     = {{COEUS:} a semantic web application framework},
  booktitle = {{SWAT4LS}},
  pages     = {66--73},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/MagkaMH11,
  author    = {Despoina Magka and
               Boris Motik and
               Ian Horrocks},
  title     = {Chemical knowledge representation with description graphs and logic
               programming},
  booktitle = {{SWAT4LS}},
  pages     = {74--75},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/MikroyannidiISR11,
  author    = {Eleni Mikroyannidi and
               Luigi Iannone and
               Robert Stevens and
               Alan L. Rector},
  title     = {Inspecting regularities and irregularities in {SNOMED-CT}},
  booktitle = {{SWAT4LS}},
  pages     = {76--83},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/NebotL11,
  author    = {Victoria Nebot and
               Rafael Berlanga Llavori},
  title     = {Semantics-aware open information extraction in the biomedical domain},
  booktitle = {{SWAT4LS}},
  pages     = {84--91},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/NishikataT11,
  author    = {Koro Nishikata and
               Tetsuro Toyoda},
  title     = {BioLOD.org: ontology-based integration of biological linked open data},
  booktitle = {{SWAT4LS}},
  pages     = {92--93},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/PathakKC11,
  author    = {Jyotishman Pathak and
               Richard C. Kiefer and
               Christopher G. Chute},
  title     = {The linked clinical data project: applying semantic web technologies
               for clinical and translational research using electronic medical records},
  booktitle = {{SWAT4LS}},
  pages     = {94--95},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/PreeceEJ11,
  author    = {Justin Preece and
               Justin Elser and
               Pankaj Jaiswal},
  title     = {Planteome annotation wiki: a semantic application for the community
               curation of plant genotypes and phenotypes},
  booktitle = {{SWAT4LS}},
  pages     = {96--97},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/RiazanovRKFBSB11,
  author    = {Alexandre Riazanov and
               Gregory W. Rose and
               Artjom Klein and
               Alan J. Forster and
               Christopher J. O. Baker and
               Arash Shaban{-}Nejad and
               David L. Buckeridge},
  title     = {Towards clinical intelligence with {SADI} semantic web services: a
               case study with hospital-acquired infections data},
  booktitle = {{SWAT4LS}},
  pages     = {106--113},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/RodriguezKSLP11,
  author    = {Natalia D{\'{\i}}az Rodr{\'{\i}}guez and
               Pasi Kankaanp{\"{a}}{\"{a}} and
               M. Mohsin Saleemi and
               Johan Lilius and
               Ivan Porres},
  title     = {Programming biomedical smart space applications with \emph{BioImageXD}
               and \emph{PythonRules}},
  booktitle = {{SWAT4LS}},
  pages     = {10--11},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/TatumDL11,
  author    = {Zuotian Tatum and
               Johan T. den Dunnen and
               Jeroen F. J. Laros},
  title     = {CLI-mate: an interface generator for command line programs},
  booktitle = {{SWAT4LS}},
  pages     = {114--115},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/WachterFS11,
  author    = {Thomas W{\"{a}}chter and
               G{\"{o}}tz Fabian and
               Michael Schroeder},
  title     = {{DOG4DAG:} semi-automated ontology generation in OBO-Edit and Prot{\'{e}}g{\'{e}}},
  booktitle = {{SWAT4LS}},
  pages     = {119--120},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/WilkinsonM11,
  author    = {Mark D. Wilkinson and
               E. Luke McCarthy},
  title     = {The {SADI} plug-in to {IO} informatics' sentient knowledge explorer},
  booktitle = {{SWAT4LS}},
  pages     = {116--118},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/YamamotoYY11,
  author    = {Yasunori Yamamoto and
               Atsuko Yamaguchi and
               Akinori Yonezawa},
  title     = {Building linked open data using approximate string matching methods
               and domain specific resources},
  booktitle = {{SWAT4LS}},
  pages     = {121--122},
  publisher = {{ACM}},
  year      = {2011}
}
@inproceedings{DBLP:conf/swat4ls/ZhaoP11,
  author    = {Zhili Zhao and
               Adrian Paschke},
  title     = {A semantic multi-agent system for intelligent and adaptive scientific
               workflows},
  booktitle = {{SWAT4LS}},
  pages     = {123--124},
  publisher = {{ACM}},
  year      = {2011}
}
@proceedings{DBLP:conf/swat4ls/2011,
  editor    = {Adrian Paschke and
               Albert Burger and
               Paolo Romano and
               M. Scott Marshall and
               Andrea Splendiani},
  title     = {Proceedings of the 4th International Workshop on Semantic Web Applications
               and Tools for the Life Sciences, {SWAT4LS} 2011, London, United Kingdom,
               December 07-09, 2011},
  publisher = {{ACM}},
  year      = {2011}
}
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