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@inproceedings{DBLP:conf/icbo/00250PGE18,
author = {Hao Liu and
Ling Zheng and
Yehoshua Perl and
James Geller and
Gai Elhanan},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Can a Convolutional Neural Network Support Auditing of {NCI} Thesaurus
Neoplasm Concepts?},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_35.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:24 +0100},
biburl = {https://dblp.org/rec/conf/icbo/00250PGE18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/BartonGE18,
author = {Adrien Barton and
Olivier Grenier and
Jean{-}Fran{\c{c}}ois Ethier},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {The Identity and Mereology of Pathological Dispositions},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_13.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/BartonGE18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/BeasleyM18,
author = {Lucas Beasley and
Prashanti Manda},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Comparison of Natural Language Processing Tools for Automatic Gene
Ontology Annotation of Scientific Literature},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_4.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/BeasleyM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/BelloHSR18,
author = {Susan M. Bello and
Terry F. Hayamizu and
Cynthia L. Smith and
Martin Ringwald},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Using Equivalence Axioms from the Mammalian Phenotype Ontology to
Facilitate Phenotype and Expression Comparisons},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_8.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/BelloHSR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/BodenreiderJ18,
author = {Olivier Bodenreider and
Julie James},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {The New {SNOMED} {CT} International Medicinal Product Model},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_36.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/BodenreiderJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/BonaNB18,
author = {Jonathan P. Bona and
Tracy S. Nolan and
Mathias Brochhausen},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Ontology-Enhanced Representations of Non-Image Data in The Cancer
Image Archive},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_37.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/BonaNB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/BraunL18,
author = {Ian Braun and
Carolyn J. Lawrence{-}Dill},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Computational Classification of Phenologs Across Biological Diversity},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_58.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/BraunL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/Clarkson18,
author = {Melissa D. Clarkson},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Developing Graphic Libraries to Accompany the Craniofacial Human Ontology},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_54.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/Clarkson18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/ClarksonW18,
author = {Melissa D. Clarkson and
Mark E. Whipple},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Does the Foundational Model of Anatomy Ontology Provide a Knowledgebase
for Learning and Assessment in Anatomy Education?},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_14.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/ClarksonW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/DinakarpandianL18,
author = {Deendayal Dinakarpandian and
Michaela Liedtke and
Mark A. Musen and
Bhavish Dinakar},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {{TOCSOC:} {A} Temporal Ontology for Comparing the Survival Outcomes
of Clinical Trials in Oncology},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_39.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/DinakarpandianL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/DuncanTSLWZRHMR18,
author = {William D. Duncan and
Thankam Thyvalikakath and
Zasim Azhar Siddiqui and
Michelle LaPradd and
Chen Wen and
Jim Zheng and
Anna Roberts and
Daniel Hood and
Aparna Manimangala and
Donald Rindal and
Mark Jurkovich and
Tracy Shea and
David Bogacz and
Terrence Yu and
Jeffry Fellows and
Valerie Gordan and
Gregg H. Gilbert},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Using the Oral Health and Disease Ontology to Study Dental Outcomes
in National Dental {PBRN} Practices},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_61.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/DuncanTSLWZRHMR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/DuncanWMK18,
author = {William D. Duncan and
Philip Whalen and
Aditya Muralidharan and
Jonathan Kiddy},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Enhancing Semantic Analysis of Pathology Reports},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_60.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/DuncanWMK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/EndaraBCJLC18,
author = {Lorena Endara and
J. Gordon Burleigh and
Laurel Cooper and
Pankaj Jaiswal and
Marie{-}Ang{\'{e}}lique Laporte and
Hong Cui},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {A Natural Language Processing Pipeline to Extract Phenotypic Data
from Formal Taxonomic Descriptions with a Focus on Flagellate Plants},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_50.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/EndaraBCJLC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/FarrellB18,
author = {Brenda Farrell and
Jason Bengtson},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Ontology Based Data Architecture to Promote Data Sharing in Electrophysiology},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_3.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/FarrellB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/FernandoM18,
author = {Pasan Fernando and
Erliang Zeng Paula Mabee},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {The Integrative use of Anatomy Ontology and Protein-protein Interaction
Networks to Study Evolutionary Phenotypic Transitions},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_52.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/FernandoM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/GourdineVWBH18,
author = {Jean{-}Philippe F. Gourdine and
Nicole A. Vasilevsky and
Lilly Winfree and
Matthew H. Brush and
Melissa A. Haendel},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Expanding the Molecular Glycophenotype Ontology to include model organisms
and acquired diseases},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_38.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/GourdineVWBH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/GuptaXJTR18,
author = {Amit Gupta and
Weijia Xu and
Pankaj Jaiswal and
Crispin Taylor and
Jennifer Regala},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Domain Informational Vocabulary Extraction Experiences with Publication
Pipeline Integration and Ontology Curation},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_43.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/GuptaXJTR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/HalperOPAM18,
author = {Michael Halper and
Christopher Ochs and
Yehoshua Perl and
Sivaram Arabandi and
Mark A. Musen},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Quality Assurance of Ontology Content Reuse},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_15.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/HalperOPAM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/HayesBB18,
author = {Corey J. Hayes and
Jonathan P. Bona and
Mathias Brochhausen},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Towards the Development of an Opioid Misuse Ontology},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_56.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/HayesBB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/HeSOMLBKHBAIHM18,
author = {Yongqun He and
Becky Steck and
Edison Ong and
Laura Mariani and
Chrysta Lienczewski and
Ulysses J. Balis and
Matthias Kretzler and
Jonathan Himmelfarb and
John F. Bertram and
Evren U. Azeloglu and
Ravi Iyengar and
Deborah Hoshizaki and
Sean D. Mooney},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {{KTAO:} {A} Kidney Tissue Atlas Ontology to Support Community-Based
Kidney Knowledge Base Development and Data Integration},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_28.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/HeSOMLBKHBAIHM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/HollanderGL18,
author = {Allan Hollander and
Christine Geith and
Matthew Lange},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {An Expertise Ontology for Cooperative Extension},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_30.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/HollanderGL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/HorridgeGNTM18,
author = {Matthew Horridge and
Rafael S. Gon{\c{c}}alves and
Csongor I. Nyulas and
Tania Tudorache and
Mark A. Musen},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Prot{\'{e}}g{\'{e}} 5.5 - Improvements for Editing Biomedical
Ontologies},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_23.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/HorridgeGNTM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/LaulederkindHWB18,
author = {Stanley J. F. Laulederkind and
G. Thomas Hayman and
Shur{-}Jen Wang and
Elizabeth R. Bolton and
Jennifer R. Smith and
Marek Tutaj and
Jeff de Pons and
Mary Shimoyama and
Melinda R. Dwinell},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Adapting Disease Vocabularies for Curation at the Rat Genome Database},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_2.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/LaulederkindHWB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/LiuCZPG18,
author = {Hao Liu and
Ling Chen and
Ling Zheng and
Yehoshua Perl and
James Geller},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {A Quality Assurance Methodology for ChEBI Ontology Focusing on Uncommonly
Modeled Concepts},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_7.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/LiuCZPG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/MabeeBDLMV18,
author = {Paula M. Mabee and
James P. Balhoff and
Wasila M. Dahdul and
Hilmar Lapp and
Christopher J. Mungall and
Todd J. Vision},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Reasoning over Anatomical Homology in the Phenoscape {KB}},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_62.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/MabeeBDLMV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/MandaBM18,
author = {Prashanti Manda and
Lucas Beasley and
Somya D. Mohanty},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Taking a Dive: Experiments in Deep Learning for Automatic Ontology-Based
Annotation of Scientific Literature},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_18.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/MandaBM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/MandaV18,
author = {Prashanti Manda and
Todd J. Vision},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {On the Statistical Sensitivity of Semantic Similarity Metrics},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_47.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/MandaV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/MasciMREO0S018,
author = {Anna Maria Masci and
Shannon McCall and
Alessandro Racioppi and
Helena Judge Ellis and
Jihad S. Obeid and
Barry Smith and
Christian J. Stoeckert Jr. and
Jie Zheng},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Standardization of the Histopathology Cancer Report: An Ontological
Approach},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_10.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/MasciMREO0S018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/MatentzogluO18,
author = {Nicolas Matentzoglu and
David Osumi{-}Sutherland},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Reconciling Ontology Definitions using the Ontology Pattern Reconciliation
Workbench and the {DOSDP} Framework},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_22.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/MatentzogluO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/MeierLECPJP18,
author = {Austin Meier and
Marie{-}Ang{\'{e}}lique Laporte and
Justin Elser and
Laurel Cooper and
Justin Preece and
Pankaj Jaiswal and
Jorrit H. Poelen},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {{OOPS:} The Ontology of Plant Stress, {A} Semi-Automated Standardization
Methodology},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_25.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/MeierLECPJP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/MejiaC18,
author = {Citlalli Mej{\'{\i}}a and
Julio Collado{-}Vides},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {A Falsification Approach to Create and Check Ontology Definitions},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_16.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/MejiaC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/NaravaneL18,
author = {Tarini Naravane and
Matthew Lange},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Ontological Framework for Representation of Tractable Flavor: Food
Phenotype, Sensation, Perception},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_45.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/NaravaneL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/OngH018,
author = {Edison Ong and
Yongqun He and
Jie Zheng},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {eXtensible Ontology Development {(XOD)} using Web-based Ontoanimal
Tools},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_24.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/OngH018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/OtteSVMUHHOBDT18,
author = {J. Neil Otte and
Cooper Stansbury and
Jonathan Vajda and
Frank J. Manion and
Elizabeth Umberfield and
Yongqun He and
Marcelline R. Harris and
Jihad S. Obeid and
Mathias Brochhausen and
William D. Duncan and
Cui Tao},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Coordinated Evolution of Ontologies of Informed Consent},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_59.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/OtteSVMUHHOBDT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/PellsFSFBCCJLNP18,
author = {Troy J. Pells and
Malcolm E. Fisher and
Erik Segerdell and
Joshua D. Fortriede and
Kevin A. Burns and
Stanley Chu and
Praneet Chaturvedi and
Christina James{-}Zorn and
Vaneet Lotay and
Mardi J. Nenni and
Virgilio G. Ponferrada and
Dong Zhou Wang and
Ying Wang and
Kamran Karimi and
Peter D. Vize and
Aaron M. Zorn},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Visualization of Gene Expression and Expression as a Phenotype with
the XPO, {XAO} and {DO} using a Combination of Experimental Data Sources},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_53.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/PellsFSFBCCJLNP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/SawesiJD18,
author = {Suhila A. Sawesi and
Josette Jones and
William Duncan},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {An Ontology For Formal Representation Of Medication Adherence-Related
Knowledge: Case Study In Breast Cancer},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_57.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/SawesiJD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/SchekotihinRSHT18,
author = {Konstantin Schekotihin and
Patrick Rodler and
Wolfgang Schmid and
Matthew Horridge and
Tania Tudorache},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Test-Driven Ontology Development in Prot{\'{e}}g{\'{e}}},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_31.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/SchekotihinRSHT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/SchekotihinRSHT18a,
author = {Konstantin Schekotihin and
Patrick Rodler and
Wolfgang Schmid and
Matthew Horridge and
Tania Tudorache},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {A Prot{\'{e}}g{\'{e}} Plug-In for Test-Driven Ontology Development},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_9.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/SchekotihinRSHT18a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/StoeckertBFMW18,
author = {Christian J. Stoeckert Jr. and
David L. Birtwell and
Hayden Freedman and
Mark A. Miller and
Heather Williams},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Transforming and Unifying Research with Biomedical Ontologies: The
Penn {TURBO} Project},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_12.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/StoeckertBFMW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/TauberBDMO18,
author = {Rebecca Tauber and
James P. Balhoff and
Eric Douglass and
Chris Mungall and
James A. Overton},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Standardizing Ontology Workflows Using {ROBOT}},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_46.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/TauberBDMO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/TauberMNCCG18,
author = {Rebecca Tauber and
James B. Munro and
Suvarna Nadendla and
Binika Chunara and
Marcus C. Chibucos and
Michelle G. Giglio},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Current Development in the Evidence and Conclusion Ontology {(ECO)}},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_19.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/TauberMNCCG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/TrigkakisPMEKFM18,
author = {Dimitrios Trigkakis and
Justin Preece and
Austin Meier and
Justin Elser and
Kristian Kvilekval and
Dmitry V. Fedorov and
B. S. Manjunath and
Pankaj Jaiswal and
Sinisa Todorovic},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Planteome {\&} BisQue: Automating Image Annotation with Ontologies
using Deep-Learning Networks},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_11.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/TrigkakisPMEKFM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/VitaPOCK18,
author = {Randi Vita and
Bjoern Peters and
James A. Overton and
Kei{-}Hoi Cheung and
Steven H. Kleinstein},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Formalizing the Representation of Immune Exposures for Human Immunology
Studies},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_41.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/VitaPOCK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/WelterJO18,
author = {Danielle Welter and
Simon Jupp and
David Osumi{-}Sutherland},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Human Cell Atlas Ontology},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_40.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/WelterJO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/icbo/2018,
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285},
urn = {urn:nbn:de:0074-2285-4},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/2018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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