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@article{DBLP:journals/nar/0001A17,
author = {Morten Nielsen and
Massimo Andreatta},
title = {NNAlign: a platform to construct and evaluate artificial neural network
models of receptor-ligand interactions},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W344--W349},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx276},
doi = {10.1093/NAR/GKX276},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/0001A17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/0001VEFMABBBBBB17,
author = {Sebastian K{\"{o}}hler and
Nicole A. Vasilevsky and
Mark Engelstad and
Erin Foster and
Julie A. McMurry and
S{\'{e}}gol{\`{e}}ne Aym{\'{e}} and
Gareth Baynam and
Susan M. Bello and
Cornelius F. Boerkoel and
Kym M. Boycott and
Michael Brudno and
Orion J. Buske and
Patrick F. Chinnery and
Valentina Cipriani and
Laureen E. Connell and
Hugh J. S. Dawkins and
Laura E. DeMare and
Andrew Devereau and
Bert B. A. de Vries and
Helen V. Firth and
Kathleen Freson and
Daniel Greene and
Ada Hamosh and
Ingo Helbig and
Courtney Hum and
Johanna J{\"{a}}hn and
Roger James and
Roland Krause and
Stanley J. F. Laulederkind and
Hanns Lochm{\"{u}}ller and
Gholson J. Lyon and
Soichi Ogishima and
Annie Olry and
Willem H. Ouwehand and
Nikolas Pontikos and
Ana Rath and
Franz Schaefer and
Richard H. Scott and
Michael Segal and
Panagiotis I. Sergouniotis and
Richard Sever and
Cynthia L. Smith and
Volker Straub and
Rachel Thompson and
Catherine Turner and
Ernest Turro and
Marijcke W. M. Veltman and
Tom Vulliamy and
Jing Yu and
Julie von Ziegenweidt and
Andreas Zankl and
Stephan Z{\"{u}}chner and
Tomasz Zemojtel and
Julius O. B. Jacobsen and
Tudor Groza and
Damian Smedley and
Christopher J. Mungall and
Melissa A. Haendel and
Peter N. Robinson},
title = {The Human Phenotype Ontology in 2017},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D865--D876},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1039},
doi = {10.1093/NAR/GKW1039},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/0001VEFMABBBBBB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AgrawalKGSM17,
author = {Priyesh Agrawal and
Shradha Khater and
Money Gupta and
Neetu Sain and
Debasisa Mohanty},
title = {RiPPMiner: a bioinformatics resource for deciphering chemical structures
of RiPPs based on prediction of cleavage and cross-links},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W80--W88},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx408},
doi = {10.1093/NAR/GKX408},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/AgrawalKGSM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AkenAAABBBCCCGG17,
author = {Bronwen L. Aken and
Premanand Achuthan and
Wasiu A. Akanni and
M. Ridwan Amode and
Friederike Bernsdorff and
Jyothish Bhai and
Konstantinos Billis and
Denise Carvalho{-}Silva and
Carla A. Cummins and
Peter Clapham and
Laurent Gil and
Carlos Garc{\'{\i}}a{-}Gir{\'{o}}n and
Leo Gordon and
Thibaut Hourlier and
Sarah E. Hunt and
Sophie H. Janacek and
Thomas Juettemann and
Stephen Keenan and
Matthew R. Laird and
Ilias Lavidas and
Thomas Maurel and
William M. McLaren and
Benjamin Moore and
Daniel N. Murphy and
Rishi Nag and
Victoria Newman and
Michael Nuhn and
Chuang Kee Ong and
Anne Parker and
Mateus Patricio and
Harpreet Singh Riat and
Daniel Sheppard and
Helen Sparrow and
Kieron R. Taylor and
Anja Thormann and
Alessandro Vullo and
Brandon Walts and
Steven P. Wilder and
Amonida Zadissa and
Myrto Kostadima and
Fergal J. Martin and
Matthieu Muffato and
Emily Perry and
Magali Ruffier and
Daniel M. Staines and
Stephen J. Trevanion and
Fiona Cunningham and
Andrew D. Yates and
Daniel R. Zerbino and
Paul Flicek},
title = {Ensembl 2017},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D635--D642},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1104},
doi = {10.1093/NAR/GKW1104},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/AkenAAABBBCCCGG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Alanis-LobatoAS17,
author = {Gregorio Alanis{-}Lobato and
Miguel A. Andrade{-}Navarro and
Martin H. Schaefer},
title = {{HIPPIE} v2.0: enhancing meaningfulness and reliability of protein-protein
interaction networks},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D408--D414},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw985},
doi = {10.1093/NAR/GKW985},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Alanis-LobatoAS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AlanjaryKABWHPZ17,
author = {Mohammad Alanjary and
Brent Kronmiller and
Martina Adamek and
Kai Blin and
Tilmann Weber and
Daniel H. Huson and
Benjamin Philmus and
Nadine Ziemert},
title = {The Antibiotic Resistant Target Seeker (ARTS), an exploration engine
for antibiotic cluster prioritization and novel drug target discovery},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W42--W48},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx360},
doi = {10.1093/NAR/GKX360},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/AlanjaryKABWHPZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AndreattaA017,
author = {Massimo Andreatta and
Bruno Alvarez and
Morten Nielsen},
title = {GibbsCluster: unsupervised clustering and alignment of peptide sequences},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W458--W463},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx248},
doi = {10.1093/NAR/GKX248},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AndreattaA017.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AshkenazyKMCP17,
author = {Haim Ashkenazy and
Eli Levy Karin and
Zach Mertens and
Reed A. Cartwright and
Tal Pupko},
title = {SpartaABC: a web server to simulate sequences with indel parameters
inferred using an approximate Bayesian computation algorithm},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W453--W457},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx322},
doi = {10.1093/NAR/GKX322},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AshkenazyKMCP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AurrecoecheaBBB17,
author = {Cristina Aurrecoechea and
Ana Barreto and
Evelina Y. Basenko and
John Brestelli and
Brian P. Brunk and
Shon Cade and
Kathryn Crouch and
Ryan Doherty and
Dave Falke and
Steve Fischer and
Bindu Gajria and
Omar S. Harb and
Mark Heiges and
Christiane Hertz{-}Fowler and
Sufen Hu and
John Iodice and
Jessica C. Kissinger and
Cris Lawrence and
Wei Li and
Deborah F. Pinney and
Jane A. Pulman and
David S. Roos and
Achchuthan Shanmugasundram and
Fatima Silva{-}Franco and
Sascha Steinbiss and
Christian J. Stoeckert Jr. and
Drew Spruill and
Haiming Wang and
Susanne Warrenfeltz and
Jie Zheng},
title = {EuPathDB: the eukaryotic pathogen genomics database resource},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D581--D591},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1105},
doi = {10.1093/NAR/GKW1105},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/AurrecoecheaBBB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BackesKSFSMLK17,
author = {Christina Backes and
Tim Kehl and
Daniel St{\"{o}}ckel and
Tobias Fehlmann and
Lara Schneider and
Eckart Meese and
Hans{-}Peter Lenhof and
Andreas Keller},
title = {miRPathDB: a new dictionary on microRNAs and target pathways},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D90--D96},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw926},
doi = {10.1093/NAR/GKW926},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BackesKSFSMLK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BaekPHPS17,
author = {Minkyung Baek and
Taeyong Park and
Lim Heo and
Chiwook Park and
Chaok Seok},
title = {GalaxyHomomer: a web server for protein homo-oligomer structure prediction
from a monomer sequence or structure},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W320--W324},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx246},
doi = {10.1093/NAR/GKX246},
timestamp = {Thu, 09 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BaekPHPS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BashaBSLKHL17,
author = {Omer Basha and
Ruth Barshir and
Moran Sharon and
Eugene Lerman and
Binyamin F. Kirson and
Idan Hekselman and
Esti Yeger Lotem},
title = {The TissueNet v.2 database: {A} quantitative view of protein-protein
interactions across human tissues},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D427--D431},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1088},
doi = {10.1093/NAR/GKW1088},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BashaBSLKHL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BensonCCKLOS17,
author = {Dennis A. Benson and
Mark Cavanaugh and
Karen Clark and
Ilene Karsch{-}Mizrachi and
David J. Lipman and
James Ostell and
Eric W. Sayers},
title = {GenBank},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D37--D42},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1070},
doi = {10.1093/NAR/GKW1070},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/BensonCCKLOS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BertelliLWLHWB17,
author = {Claire Bertelli and
Matthew R. Laird and
Kelly P. Williams and
Britney Y. Lau and
Gemma Hoad and
Geoffrey L. Winsor and
Fiona S. L. Brinkman},
title = {IslandViewer 4: expanded prediction of genomic islands for larger-scale
datasets},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W30--W35},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx343},
doi = {10.1093/NAR/GKX343},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BertelliLWLHWB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BienertWBTSBS17,
author = {Stefan Bienert and
Andrew Waterhouse and
Tjaart A. P. de Beer and
Gerardo Tauriello and
Gabriel Studer and
Lorenza Bordoli and
Torsten Schwede},
title = {The {SWISS-MODEL} Repository - new features and functionality},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D313--D319},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1132},
doi = {10.1093/NAR/GKW1132},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BienertWBTSBS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlakeEKRSBG17,
author = {Judith A. Blake and
Janan T. Eppig and
James A. Kadin and
Joel E. Richardson and
Cynthia L. Smith and
Carol J. Bult and
The Mouse Genome Database Group},
title = {Mouse Genome Database {(MGD)-2017:} community knowledge resource for
the laboratory mouse},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D723--D729},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1040},
doi = {10.1093/NAR/GKW1040},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BlakeEKRSBG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Blanco-MiguezFL17,
author = {Aitor Blanco{-}M{\'{\i}}guez and
Florentino Fdez{-}Riverola and
An{\'{a}}lia Louren{\c{c}}o and
Borja S{\'{a}}nchez},
title = {{P4P:} a peptidome-based strain-level genome comparison web tool},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W265--W269},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx389},
doi = {10.1093/NAR/GKX389},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Blanco-MiguezFL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlinMKLW17,
author = {Kai Blin and
Marnix H. Medema and
Renzo Kottmann and
Sang Yup Lee and
Tilmann Weber},
title = {The antiSMASH database, a comprehensive database of microbial secondary
metabolite biosynthetic gene clusters},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D555--D559},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw960},
doi = {10.1093/NAR/GKW960},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BlinMKLW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlinWCLSKDSKNDM17,
author = {Kai Blin and
Thomas Wolf and
Marc G. Chevrette and
Xiaowen Lu and
Christopher J. Schwalen and
Satria A. Kautsar and
Hernando G. Suarez Duran and
Emmanuel L. C. de los Santos and
Hyun Uk Kim and
Mariana Nave and
Jeroen S. Dickschat and
Douglas A. Mitchell and
Ekaterina Shelest and
Rainer Breitling and
Eriko Takano and
Sang Yup Lee and
Tilmann Weber and
Marnix H. Medema},
title = {antiSMASH 4.0 - improvements in chemistry prediction and gene cluster
boundary identification},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W36--W41},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx319},
doi = {10.1093/NAR/GKX319},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BlinWCLSKDSKNDM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CanadaCROVK17,
author = {Andr{\'{e}}s Ca{\~{n}}ada and
Salvador Capella{-}Guti{\'{e}}rrez and
Obdulia Rabal and
Julen Oyarzabal and
Alfonso Valencia and
Martin Krallinger},
title = {LimTox: a web tool for applied text mining of adverse event and toxicity
associations of compounds, drugs and genes},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W484--W489},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx462},
doi = {10.1093/NAR/GKX462},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CanadaCROVK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CaoSCMCYCS17,
author = {Ruifang Cao and
Yan Shi and
Shuangguan Chen and
Yimin Ma and
Jiajun Chen and
Juan Yang and
Geng Chen and
Tieliu Shi},
title = {dbSAP: single amino-acid polymorphism database for protein variation
detection},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D827--D832},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1096},
doi = {10.1093/NAR/GKW1096},
timestamp = {Fri, 28 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CaoSCMCYCS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CapriottiF17,
author = {Emidio Capriotti and
Piero Fariselli},
title = {PhD-SNPg: a webserver and lightweight tool for scoring single nucleotide
variants},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W247--W252},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx369},
doi = {10.1093/NAR/GKX369},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CapriottiF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Chatr-aryamontri17,
author = {Andrew Chatr{-}aryamontri and
Rose Oughtred and
Lorrie Boucher and
Jennifer M. Rust and
Christie S. Chang and
Nadine Kolas and
Lara O'Donnell and
Sara Oster and
Chandra L. Theesfeld and
Adnane Sellam and
Chris Stark and
Bobby{-}Joe Breitkreutz and
Kara Dolinski and
Mike Tyers},
title = {The BioGRID interaction database: 2017 update},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D369--D379},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1102},
doi = {10.1093/NAR/GKW1102},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Chatr-aryamontri17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChenBEFCLWY17,
author = {Siwei Chen and
Juan F. Beltr{\'{a}}n and
Clara Esteban{-}Jurado and
Sebasti{\`{a}} Franch{-}Exp{\'{o}}sito and
Sergi Castellv{\'{\i}}{-}Bel and
Steven Lipkin and
Xiaomu Wei and
Haiyuan Yu},
title = {GeMSTONE: orchestrated prioritization of human germline mutations
in the cloud},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W207--W214},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx398},
doi = {10.1093/NAR/GKX398},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChenBEFCLWY17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChenJML17,
author = {Dongsheng Chen and
Sanjie Jiang and
Xiaoyan Ma and
Fang Li},
title = {TFBSbank: a platform to dissect the big data of protein-DNA interaction
in human and model species},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D151--D157},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1035},
doi = {10.1093/NAR/GKW1035},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChenJML17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChenLCZB17,
author = {Wei{-}Hua Chen and
Guanting Lu and
Xiao Chen and
Xing{-}Ming Zhao and
Peer Bork},
title = {{OGEE} v2: an update of the online gene essentiality database with
special focus on differentially essential genes in human cancer cell
lines},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D940--D944},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1013},
doi = {10.1093/NAR/GKW1013},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChenLCZB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChenMCPSPRHAHVH17,
author = {I{-}Min A. Chen and
Victor M. Markowitz and
Ken Chu and
Krishna Palaniappan and
Ernest Szeto and
Manoj Pillay and
Anna Ratner and
Jinghua Huang and
Evan Andersen and
Marcel Huntemann and
Neha Varghese and
Michalis Hadjithomas and
Kristin Tennessen and
Torben Nielsen and
Natalia Ivanova and
Nikos Kyrpides},
title = {{IMG/M:} integrated genome and metagenome comparative data analysis
system},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D507--D516},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw929},
doi = {10.1093/NAR/GKW929},
timestamp = {Sat, 19 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChenMCPSPRHAHVH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChojnackiCLFL17,
author = {Szymon Chojnacki and
Andrew Peter Cowley and
Joon Lee and
Anna Foix and
Rodrigo Lopez},
title = {Programmatic access to bioinformatics tools from {EMBL-EBI} update:
2017},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W550--W553},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx273},
doi = {10.1093/NAR/GKX273},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChojnackiCLFL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChungCCLLCSC17,
author = {I{-}Fang Chung and
Shing{-}Jyh Chang and
Chen{-}Yang Chen and
Shu{-}Hsuan Liu and
Chia{-}Yang Li and
Chia{-}Hao Chan and
Chuan{-}Chi Shih and
Wei{-}Chung Cheng},
title = {YM500v3: a database for small {RNA} sequencing in human cancer research},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D925--D931},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1084},
doi = {10.1093/NAR/GKW1084},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChungCCLLCSC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ClarkeFBSPLTF17,
author = {Laura Clarke and
Susan Fairley and
Xiangqun Zheng Bradley and
Ian Streeter and
Emily Perry and
Ernesto Lowy{-}Gallego and
Anne{-}Marie Tass{\'{e}} and
Paul Flicek},
title = {The international Genome sample resource {(IGSR):} {A} worldwide collection
of genome variation incorporating the 1000 Genomes Project data},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D854--D859},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw829},
doi = {10.1093/NAR/GKW829},
timestamp = {Mon, 26 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ClarkeFBSPLTF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ClimaPCDSSSSGA17,
author = {Rosanna Clima and
Roberto Preste and
Claudia Calabrese and
Maria Angela Diroma and
Mariangela Santorsola and
Gaetano Scioscia and
Domenico Simone and
Lishuang Shen and
Giuseppe Gasparre and
Marcella Attimonelli},
title = {HmtDB 2016: data update, a better performing query system and human
mitochondrial {DNA} haplogroup predictor},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D698--D706},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1066},
doi = {10.1093/NAR/GKW1066},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ClimaPCDSSSSGA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Consortium17,
author = {The RNAcentral Consortium},
title = {RNAcentral: a comprehensive database of non-coding {RNA} sequences},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D128--D134},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1008},
doi = {10.1093/NAR/GKW1008},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Consortium17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Consortium17a,
author = {The UniProt Consortium},
title = {UniProt: the universal protein knowledgebase},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D158--D169},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1099},
doi = {10.1093/NAR/GKW1099},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Consortium17a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Consortium17b,
author = {The Gene Ontology Consortium},
title = {Expansion of the Gene Ontology knowledgebase and resources},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D331--D338},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1108},
doi = {10.1093/NAR/GKW1108},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Consortium17b.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CookZRA17,
author = {Daniel E. Cook and
Stefan Zdraljevic and
Joshua P. Roberts and
Erik C. Andersen},
title = {CeNDR, the Caenorhabditis elegans natural diversity resource},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D650--D657},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw893},
doi = {10.1093/NAR/GKW893},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CookZRA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Dabrowski-Tumanski17,
author = {Pawel Dabrowski{-}Tumanski and
Aleksandra I. Jarmolinska and
Wanda Niemyska and
Eric J. Rawdon and
Kenneth C. Millett and
Joanna I. Sulkowska},
title = {LinkProt: a database collecting information about biological links},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D243--D249},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw976},
doi = {10.1093/NAR/GKW976},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Dabrowski-Tumanski17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DavidRD17,
author = {Fabrice P. A. David and
Jacques Rougemont and
Bart Deplancke},
title = {GETPrime 2.0: gene- and transcript-specific qPCR primers for 13 species
including polymorphisms},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D56--D60},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw913},
doi = {10.1093/NAR/GKW913},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DavidRD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DavisGJSKMWWM17,
author = {Allan Peter Davis and
Cynthia J. Grondin and
Robin J. Johnson and
Daniela Sciaky and
Benjamin L. King and
Roy McMorran and
Jolene Wiegers and
Thomas C. Wiegers and
Carolyn J. Mattingly},
title = {The Comparative Toxicogenomics Database: update 2017},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D972--D978},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw838},
doi = {10.1093/NAR/GKW838},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DavisGJSKMWWM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DawsonLDLLAOS17,
author = {Natalie L. Dawson and
Tony E. Lewis and
Sayoni Das and
Jonathan G. Lees and
David A. Lee and
Paul Ashford and
Christine A. Orengo and
Ian Sillitoe},
title = {{CATH:} an expanded resource to predict protein function through structure
and sequence},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D289--D295},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1098},
doi = {10.1093/NAR/GKW1098},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DawsonLDLLAOS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DeutschCSJPTCLO17,
author = {Eric W. Deutsch and
Attila Csordas and
Zhi Sun and
Andrew F. Jarnuczak and
Yasset P{\'{e}}rez{-}Riverol and
Tobias Ternent and
David S. Campbell and
Manuel Bernal Llinares and
Shujiro Okuda and
Shin Kawano and
Robert L. Moritz and
Jeremy Carver and
Mingxun Wang and
Yasushi Ishihama and
Nuno Bandeira and
Henning Hermjakob and
Juan Antonio Vizca{\'{\i}}no},
title = {The ProteomeXchange consortium in 2017: supporting the cultural change
in proteomics public data deposition},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D1100--D1106},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw936},
doi = {10.1093/NAR/GKW936},
timestamp = {Sat, 17 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/DeutschCSJPTCLO17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DhariwalCHKAX17,
author = {Achal Dhariwal and
Jasmine Chong and
Salam Habib and
Irah L. King and
Luis B. Agellon and
Jianguo Xia},
title = {MicrobiomeAnalyst: a web-based tool for comprehensive statistical,
visual and meta-analysis of microbiome data},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W180--W188},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx295},
doi = {10.1093/NAR/GKX295},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DhariwalCHKAX17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DoddaVTJ17,
author = {Leela S. Dodda and
Israel Cabeza de Vaca and
Julian Tirado{-}Rives and
William L. Jorgensen},
title = {LigParGen web server: an automatic {OPLS-AA} parameter generator for
organic ligands},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W331--W336},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx312},
doi = {10.1093/NAR/GKX312},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DoddaVTJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DoorslaerLXMKLS17,
author = {Koenraad Van Doorslaer and
Zhiwen Li and
Sandhya Xirasagar and
Piet Maes and
David Kaminsky and
David Liou and
Qiang Sun and
Ramandeep Kaur and
Yentram Huyen and
Alison A. McBride},
title = {The Papillomavirus Episteme: a major update to the papillomavirus
sequence database},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D499--D506},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw879},
doi = {10.1093/NAR/GKW879},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DoorslaerLXMKLS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DreosAGPB17,
author = {Ren{\'{e}} Dreos and
Giovanna Ambrosini and
Romain Groux and
Roua{\"{\i}}da Cavin P{\'{e}}rier and
Philipp Bucher},
title = {The eukaryotic promoter database in its 30th year: focus on non-vertebrate
organisms},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D51--D55},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1069},
doi = {10.1093/NAR/GKW1069},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DreosAGPB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/EfstathiouAPTDT17,
author = {Georgios Efstathiou and
Andreas N. Antonakis and
Georgios A. Pavlopoulos and
Theodosios Theodosiou and
Peter Divanach and
David C. Trudgian and
Benjamin Thomas and
Nikolas Papanikolaou and
Michalis Aivaliotis and
Oreste Acuto and
Ioannis Iliopoulos},
title = {ProteoSign: an end-user online differential proteomics statistical
analysis platform},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W300--W306},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx444},
doi = {10.1093/NAR/GKX444},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/EfstathiouAPTDT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ElbourneTHP17,
author = {Liam D. H. Elbourne and
Sasha G. Tetu and
Karl A. Hassan and
Ian T. Paulsen},
title = {TransportDB 2.0: a database for exploring membrane transporters in
sequenced genomes from all domains of life},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D320--D324},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1068},
doi = {10.1093/NAR/GKW1068},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ElbourneTHP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FahrrolfesBFMNO17,
author = {Rainer F{\"{a}}hrrolfes and
Stefan Bietz and
Florian Flachsenberg and
Agnes Meyder and
Eva Nittinger and
Thomas Otto and
Andrea Volkamer and
Matthias Rarey},
title = {ProteinsPlus: a web portal for structure analysis of macromolecules},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W337--W343},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx333},
doi = {10.1093/NAR/GKX333},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FahrrolfesBFMNO17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FingerSHMXLSBBB17,
author = {Jacqueline H. Finger and
Constance M. Smith and
Terry F. Hayamizu and
Ingeborg J. McCright and
Jingxia Xu and
Meiyee Law and
David R. Shaw and
Richard M. Baldarelli and
Jon S. Beal and
Olin Blodgett and
Jeff Campbell and
Lori E. Corbani and
Jill R. Lewis and
Kim L. Forthofer and
Pete J. Frost and
Sharon C. Giannatto and
Lucie N. Hutchins and
Dave Miers and
Howie Motenko and
Kevin R. Stone and
Janan T. Eppig and
James A. Kadin and
Joel E. Richardson and
Martin Ringwald},
title = {The mouse Gene Expression Database {(GXD):} 2017 update},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D730--D736},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1073},
doi = {10.1093/NAR/GKW1073},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FingerSHMXLSBBB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FinnABBBBCDEFGH17,
author = {Robert D. Finn and
Teresa K. Attwood and
Patricia C. Babbitt and
Alex Bateman and
Peer Bork and
Alan J. Bridge and
Hsin{-}Yu Chang and
Zsuzsanna Doszt{\'{a}}nyi and
Sara El{-}Gebali and
Matthew Fraser and
Julian Gough and
David Haft and
Gemma L. Holliday and
Hongzhan Huang and
Xiaosong Huang and
Ivica Letunic and
Rodrigo Lopez and
Shennan Lu and
Aron Marchler{-}Bauer and
Huaiyu Mi and
Jaina Mistry and
Darren A. Natale and
Marco Necci and
Gift Nuka and
Christine A. Orengo and
Young Mi Park and
Sebastien Pesseat and
Damiano Piovesan and
Simon C. Potter and
Neil D. Rawlings and
Nicole Redaschi and
Lorna J. Richardson and
Catherine Rivoire and
Amaia Sangrador{-}Vegas and
Christian J. A. Sigrist and
Ian Sillitoe and
Ben Smithers and
Silvano Squizzato and
Granger G. Sutton and
Narmada Thanki and
Paul D. Thomas and
Silvio C. E. Tosatto and
Cathy H. Wu and
Ioannis Xenarios and
Lai{-}Su L. Yeh and
Siew{-}Yit Yong and
Alex L. Mitchell},
title = {InterPro in 2017 - beyond protein family and domain annotations},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D190--D199},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1107},
doi = {10.1093/NAR/GKW1107},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FinnABBBBCDEFGH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ForbesBBBBTCWDP17,
author = {Simon A. Forbes and
David Beare and
Harry Boutselakis and
Sally Bamford and
Nidhi Bindal and
John G. Tate and
Charlotte Cole and
Sari Ward and
Elisabeth Dawson and
Laura Ponting and
Raymund Stefancsik and
Bhavana Harsha and
Chai Yin Kok and
Mingming Jia and
Harry Jubb and
Zbyslaw Sondka and
Sam L. Thompson and
Tisham De and
Peter J. Campbell},
title = {{COSMIC:} somatic cancer genetics at high-resolution},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D777--D783},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1121},
doi = {10.1093/NAR/GKW1121},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ForbesBBBBTCWDP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FujisawaNMWKKNH17,
author = {Takatomo Fujisawa and
Rei Narikawa and
Shin{-}ichi Maeda and
Satoru Watanabe and
Yu Kanesaki and
Koichi Kobayashi and
Jiro Nomata and
Mitsumasa Hanaoka and
Mai Watanabe and
Shigeki Ehira and
Eiji Suzuki and
Koichiro Awai and
Yasukazu Nakamura},
title = {CyanoBase: a large-scale update on its 20th anniversary},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D551--D554},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1131},
doi = {10.1093/NAR/GKW1131},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FujisawaNMWKKNH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GalgonekVJV17,
author = {Jakub Galgonek and
Jir{\'{\i}} Vymetal and
David Jakubec and
Jir{\'{\i}} Vondr{\'{a}}sek},
title = {Amino Acid Interaction {(INTAA)} web server},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W388--W392},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx352},
doi = {10.1093/NAR/GKX352},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GalgonekVJV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GalperinFR17,
author = {Michael Y. Galperin and
Xos{\'{e}} M. Fern{\'{a}}ndez{-}Su{\'{a}}rez and
Daniel J. Rigden},
title = {The 24th annual Nucleic Acids Research database issue: a look back
and upcoming changes},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D1--D11},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1188},
doi = {10.1093/NAR/GKW1188},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GalperinFR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GaudetMZBCDDGGH17,
author = {Pascale Gaudet and
Pierre{-}Andr{\'{e}} Michel and
Monique Zahn{-}Zabal and
Aurore Britan and
Isabelle Cusin and
Marcin Domagalski and
Paula D. Duek and
Alain Gateau and
Anne Gleizes and
Val{\'{e}}rie Hinard and
Valentine Rech de Laval and
JinJin Lin and
Fr{\'{e}}d{\'{e}}ric Nikitin and
Mathieu Schaeffer and
Daniel Dinis Teixeira and
Lydie Lane and
Amos Bairoch},
title = {The neXtProt knowledgebase on human proteins: 2017 update},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D177--D182},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1062},
doi = {10.1093/NAR/GKW1062},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GaudetMZBCDDGGH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GaultonHNBCMMAB17,
author = {Anna Gaulton and
Anne Hersey and
Michal Nowotka and
A. Patr{\'{\i}}cia Bento and
Jon Chambers and
David Mendez and
Prudence Mutowo{-}Meullenet and
Francis Atkinson and
Louisa J. Bellis and
Elena Cibri{\'{a}}n{-}Uhalte and
Mark Davies and
Nathan Dedman and
Anneli Karlsson and
Mar{\'{\i}}a P. Magari{\~{n}}os and
John P. Overington and
George Papadatos and
Ines Smit and
Andrew R. Leach},
title = {The ChEMBL database in 2017},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D945--D954},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1074},
doi = {10.1093/NAR/GKW1074},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GaultonHNBCMMAB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GnimpiebaVGCL17,
author = {Etienne Z. Gnimpieba and
Menno S. VanDiermen and
Shayla M. Gustafson and
Bill Conn and
Carol M. Lushbough},
title = {Bio-TDS: bioscience query tool discovery system},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D1117--D1122},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw940},
doi = {10.1093/NAR/GKW940},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GnimpiebaVGCL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GokhmanKAGTC17,
author = {David Gokhman and
Guy Kelman and
Adir Amartely and
Guy Gershon and
Shira Tsur and
Liran Carmel},
title = {Gene ORGANizer: linking genes to the organs they affect},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W138--W145},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx302},
doi = {10.1093/NAR/GKX302},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GokhmanKAGTC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GoncearencoRLSR17,
author = {Alexander Goncearenco and
Stephanie L. Rager and
Minghui Li and
Qing{-}Xiang Sang and
Igor B. Rogozin and
Anna R. Panchenko},
title = {Exploring background mutational processes to decipher cancer genetic
heterogeneity},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W514--W522},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx367},
doi = {10.1093/NAR/GKX367},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GoncearencoRLSR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GongL0XDGH17,
author = {Jing Gong and
Chun{-}Jie Liu and
Wei Liu and
Yu Xiang and
Lixia Diao and
An{-}Yuan Guo and
Leng Han},
title = {LNCediting: a database for functional effects of {RNA} editing in
lncRNAs},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D79--D84},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw835},
doi = {10.1093/NAR/GKW835},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GongL0XDGH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GorohovskiTPMRF17,
author = {Alessandro Gorohovski and
Somnath Tagore and
Vikrant Palande and
Assaf Malka and
Dorith Raviv{-}Shay and
Milana Frenkel{-}Morgenstern},
title = {ChiTaRS-3.1 - the enhanced chimeric transcripts and RNA-seq database
matched with protein-protein interactions},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D790--D795},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1127},
doi = {10.1093/NAR/GKW1127},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GorohovskiTPMRF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GramatesMSUAMRT17,
author = {L. Sian Gramates and
Steven J. Marygold and
Gilberto dos Santos and
Jose{-}Maria Urbano and
Giulia Antonazzo and
Beverley Matthews and
Alix J. Rey and
Christopher J. Tabone and
Madeline A. Crosby and
David B. Emmert and
Kathleen Falls and
Joshua L. Goodman and
Yanhui Hu and
Laura Ponting and
Andrew J. Schroeder and
Victor B. Strelets and
Jim Thurmond and
Pinglei Zhou and
The FlyBase Consortium},
title = {FlyBase at 25: looking to the future},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D663--D671},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1016},
doi = {10.1093/NAR/GKW1016},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GramatesMSUAMRT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GrazziotinKK17,
author = {Ana Laura Grazziotin and
Eugene V. Koonin and
David M. Kristensen},
title = {Prokaryotic Virus Orthologous Groups (pVOGs): a resource for comparative
genomics and protein family annotation},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D491--D498},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw975},
doi = {10.1093/NAR/GKW975},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GrazziotinKK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GruningFYWEEHBV17,
author = {Bj{\"{o}}rn A. Gr{\"{u}}ning and
J{\"{o}}rg Fallmann and
Dilmurat Yusuf and
Sebastian Will and
Anika Erxleben and
Florian Eggenhofer and
Torsten Houwaart and
B{\'{e}}r{\'{e}}nice Batut and
Pavankumar Videm and
Andrea Bagnacani and
Markus Wolfien and
Steffen Lott and
Youri Hoogstrate and
Wolfgang R. Hess and
Olaf Wolkenhauer and
Steve Hoffmann and
Altuna Akalin and
Uwe Ohler and
Peter F. Stadler and
Rolf Backofen},
title = {The {RNA} workbench: best practices for {RNA} and high-throughput
sequencing bioinformatics in Galaxy},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W560--W566},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx409},
doi = {10.1093/NAR/GKX409},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GruningFYWEEHBV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GuanYTHZBZKXZ17,
author = {Daogang Guan and
Bin Yan and
Christoph J. Thieme and
Jingmin Hua and
Hailong Zhu and
Kenneth R. Boheler and
Zhongying Zhao and
Friedrich Kragler and
Yiji Xia and
Shoudong Zhang},
title = {PlaMoM: a comprehensive database compiles plant mobile macromolecules},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D1021--D1028},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw988},
doi = {10.1093/NAR/GKW988},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GuanYTHZBZKXZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HadjithomasCCHR17,
author = {Michalis Hadjithomas and
I{-}Min A. Chen and
Ken Chu and
Jinghua Huang and
Anna Ratner and
Krishna Palaniappan and
Evan Andersen and
Victor M. Markowitz and
Nikos Kyrpides and
Natalia Ivanova},
title = {{IMG-ABC:} new features for bacterial secondary metabolism analysis
and targeted biosynthetic gene cluster discovery in thousands of microbial
genomes},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D560--D565},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1103},
doi = {10.1093/NAR/GKW1103},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HadjithomasCCHR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HansonL17,
author = {Robert M. Hanson and
Xiang{-}Jun Lu},
title = {DSSR-enhanced visualization of nucleic acid structures in Jmol},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W528--W533},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx365},
doi = {10.1093/NAR/GKX365},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HansonL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HatcherZBBNOSB17,
author = {Eneida Hatcher and
Sergey A. Zhdanov and
Yiming Bao and
Olga Blinkova and
Eric P. Nawrocki and
Yuri Ostapchuck and
Alejandro A. Sch{\"{a}}ffer and
J. Rodney Brister},
title = {Virus Variation Resource - improved response to emergent viral outbreaks},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D482--D490},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1065},
doi = {10.1093/NAR/GKW1065},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HatcherZBBNOSB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HooperCTAM17,
author = {Cornelia M. Hooper and
Ian R. Castleden and
Sandra K. Tanz and
Nader Aryamanesh and
A. Harvey Millar},
title = {{SUBA4:} the interactive data analysis centre for Arabidopsis subcellular
protein locations},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D1064--D1074},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1041},
doi = {10.1093/NAR/GKW1041},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HooperCTAM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HoweBEFFKMMMP0R17,
author = {Douglas G. Howe and
Yvonne M. Bradford and
Anne E. Eagle and
David Fashena and
Ken Frazer and
Patrick Kalita and
Prita Mani and
Ryan Martin and
Sierra Taylor Moxon and
Holly Paddock and
Christian Pich and
Sridhar Ramachandran and
Leyla Ruzicka and
Kevin Schaper and
Xiang Shao and
Amy Singer and
Sabrina Toro and
Ceri E. Van Slyke and
Monte Westerfield},
title = {The Zebrafish Model Organism Database: new support for human disease
models, mutation details, gene expression phenotypes and searching},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D758--D768},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1116},
doi = {10.1093/NAR/GKW1116},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HoweBEFFKMMMP0R17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HuCRVFZPPM17,
author = {Yanhui Hu and
Aram Comjean and
Charles Roesel and
Arunachalam Vinayagam and
Ian Flockhart and
Jonathan Zirin and
Lizabeth Perkins and
Norbert Perrimon and
Stephanie E. Mohr},
title = {FlyRNAi.org - the database of the Drosophila RNAi screening center
and transgenic RNAi project: 2017 update},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D672--D678},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw977},
doi = {10.1093/NAR/GKW977},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HuCRVFZPPM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HuYHZL17,
author = {Boqin Hu and
Yu{-}Cheng T. Yang and
Yiming Huang and
Yumin Zhu and
Zhi John Lu},
title = {{POSTAR:} a platform for exploring post-transcriptional regulation
coordinated by RNA-binding proteins},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D104--D114},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw888},
doi = {10.1093/NAR/GKW888},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HuYHZL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JenjaroenpunWSK17,
author = {Piroon Jenjaroenpun and
Thidathip Wongsurawat and
Sawannee Sutheeworapong and
Vladimir A. Kuznetsov},
title = {R-loopDB: a database for R-loop forming sequences {(RLFS)} and R-loops},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D119--D127},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1054},
doi = {10.1093/NAR/GKW1054},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/JenjaroenpunWSK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JespersenP0M17,
author = {Martin Closter Jespersen and
Bjoern Peters and
Morten Nielsen and
Paolo Marcatili},
title = {BepiPred-2.0: improving sequence-based B-cell epitope prediction using
conformational epitopes},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W24--W29},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx346},
doi = {10.1093/NAR/GKX346},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/JespersenP0M17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JiaHZLZ17,
author = {Peilin Jia and
Guangchun Han and
Junfei Zhao and
Pinyi Lu and
Zhongming Zhao},
title = {{SZGR} 2.0: a one-stop shop of schizophrenia candidate genes},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D915--D924},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw902},
doi = {10.1093/NAR/GKW902},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/JiaHZLZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JiaRAWGTLDPSDCL17,
author = {Baofeng Jia and
Amogelang R. Raphenya and
Brian P. Alcock and
Nicholas Waglechner and
Peiyao Guo and
Kara K. Tsang and
Briony A. Lago and
Biren M. Dave and
Sheldon K. Pereira and
Arjun N. Sharma and
Sachin Doshi and
M{\'{e}}lanie Courtot and
Raymond Lo and
Laura E. Williams and
Jonathan G. Frye and
Tariq Elsayegh and
Daim Sardar and
Erin L. Westman and
Andrew C. Pawlowski and
Timothy A. Johnson and
Fiona S. L. Brinkman and
Gerard D. Wright and
Andrew G. McArthur},
title = {{CARD} 2017: expansion and model-centric curation of the comprehensive
antibiotic resistance database},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D566--D573},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1004},
doi = {10.1093/NAR/GKW1004},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/JiaRAWGTLDPSDCL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JiangLLCWDJJLW17,
author = {Yi Jiang and
Zhongshan Li and
Zhenwei Liu and
Denghui Chen and
Wanying Wu and
Yaoqiang Du and
Liying Ji and
Zi{-}Bing Jin and
Wei Li and
Jinyu Wu},
title = {mirDNMR: a gene-centered database of background de novo mutation rates
in human},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D796--D803},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1044},
doi = {10.1093/NAR/GKW1044},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/JiangLLCWDJJLW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JinTYMKLG17,
author = {Jinpu Jin and
Feng Tian and
Dechang Yang and
Yuqi Meng and
Lei Kong and
Jingchu Luo and
Ge Gao},
title = {PlantTFDB 4.0: toward a central hub for transcription factors and
regulatory interactions in plants},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D1040--D1045},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw982},
doi = {10.1093/NAR/GKW982},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/JinTYMKLG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KadukRLS17,
author = {Mateusz Kaduk and
Christian Riegler and
Oliver Lemp and
Erik L. L. Sonnhammer},
title = {HieranoiDB: a database of orthologs inferred by Hieranoid},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D687--D690},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw923},
doi = {10.1093/NAR/GKW923},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KadukRLS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KanehisaFTSM17,
author = {Minoru Kanehisa and
Miho Furumichi and
Mao Tanabe and
Yoko Sato and
Kanae Morishima},
title = {{KEGG:} new perspectives on genomes, pathways, diseases and drugs},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D353--D361},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1092},
doi = {10.1093/NAR/GKW1092},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KanehisaFTSM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KangYKHMWG17,
author = {Yu{-}Jian Kang and
Dechang Yang and
Lei Kong and
Mei Hou and
Yuqi Meng and
Liping Wei and
Ge Gao},
title = {{CPC2:} a fast and accurate coding potential calculator based on sequence
intrinsic features},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W12--W16},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx428},
doi = {10.1093/NAR/GKX428},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KangYKHMWG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KarczewskiWTSRK17,
author = {Konrad J. Karczewski and
Ben Weisburd and
Brett Thomas and
Matthew Solomonson and
Douglas M. Ruderfer and
David Kavanagh and
Tymor Hamamsy and
Monkol Lek and
Kaitlin E. Samocha and
Beryl B. Cummings and
Daniel Birnbaum and
The Exome Aggregation Consortium and
Mark J. Daly and
Daniel G. MacArthur},
title = {The ExAC browser: displaying reference data information from over
60 000 exomes},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D840--D845},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw971},
doi = {10.1093/NAR/GKW971},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KarczewskiWTSRK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KarinAWPM17,
author = {Eli Levy Karin and
Haim Ashkenazy and
Susann Wicke and
Tal Pupko and
Itay Mayrose},
title = {TraitRateProp: a web server for the detection of trait-dependent evolutionary
rate shifts in sequence sites},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W260--W264},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx288},
doi = {10.1093/NAR/GKX288},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KarinAWPM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KautsarDBOM17,
author = {Satria A. Kautsar and
Hernando G. Suarez Duran and
Kai Blin and
Anne Osbourn and
Marnix H. Medema},
title = {plantiSMASH: automated identification, annotation and expression analysis
of plant biosynthetic gene clusters},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W55--W63},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx305},
doi = {10.1093/NAR/GKX305},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KautsarDBOM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KehlS0SGBMKSL17,
author = {Tim Kehl and
Lara Schneider and
Florian Schmidt and
Daniel St{\"{o}}ckel and
Nico Gerstner and
Christina Backes and
Eckart Meese and
Andreas Keller and
Marcel H. Schulz and
Hans{-}Peter Lenhof},
title = {RegulatorTrail: a web service for the identification of key transcriptional
regulators},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W146--W153},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx350},
doi = {10.1093/NAR/GKX350},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KehlS0SGBMKSL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KeselerMSBBCFGK17,
author = {Ingrid M. Keseler and
Amanda Mackie and
Alberto Santos{-}Zavaleta and
Richard Billington and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Ron Caspi and
Carol A. Fulcher and
Socorro Gama{-}Castro and
Anamika Kothari and
Markus Krummenacker and
Mario Latendresse and
Luis Mu{\~{n}}iz{-}Rascado and
Quang Ong and
Suzanne M. Paley and
Mart{\'{\i}}n Peralta{-}Gil and
Pallavi Subhraveti and
David A. Vel{\'{a}}zquez{-}Ram{\'{\i}}rez and
Daniel S. Weaver and
Julio Collado{-}Vides and
Ian T. Paulsen and
Peter D. Karp},
title = {The EcoCyc database: reflecting new knowledge about Escherichia coli
{K-12}},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D543--D550},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1003},
doi = {10.1093/NAR/GKW1003},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KeselerMSBBCFGK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KhaterGASPGGKM17,
author = {Shradha Khater and
Money Gupta and
Priyesh Agrawal and
Neetu Sain and
Jyoti Prava and
Priya Gupta and
Mansi Grover and
Narendra Kumar and
Debasisa Mohanty},
title = {SBSPKSv2: structure-based sequence analysis of polyketide synthases
and non-ribosomal peptide synthetases},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W72--W79},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx344},
doi = {10.1093/NAR/GKX344},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KhaterGASPGGKM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KimHL17,
author = {Eiru Kim and
Sohyun Hwang and
Insuk Lee},
title = {SoyNet: a database of co-functional networks for soybean Glycine max},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D1082--D1089},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw704},
doi = {10.1093/NAR/GKW704},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KimHL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KimKAKK017,
author = {Hyerin Kim and
NaNa Kang and
Kyuhyeon An and
Doyun Kim and
Jae Hyung Koo and
Min{-}Soo Kim},
title = {MRPrimerV: a database of {PCR} primers for {RNA} virus detection},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D475--D481},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1095},
doi = {10.1093/NAR/GKW1095},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KimKAKK017.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KimZLZ17,
author = {Pora Kim and
Junfei Zhao and
Pinyi Lu and
Zhongming Zhao},
title = {mutLBSgeneDB: mutated ligand binding site gene DataBase},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D256--D263},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw905},
doi = {10.1093/NAR/GKW905},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KimZLZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KinjoBSTKIN17,
author = {Akira R. Kinjo and
Gert{-}Jan Bekker and
Hirofumi Suzuki and
Yuko Tsuchiya and
Takeshi Kawabata and
Yasuyo Ikegawa and
Haruki Nakamura},
title = {Protein Data Bank Japan (PDBj): updated user interfaces, resource
description framework, analysis tools for large structures},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D282--D288},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw962},
doi = {10.1093/NAR/GKW962},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KinjoBSTKIN17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KoncSEKJ17,
author = {Janez Konc and
Blaz Skrlj and
Nika Erzen and
Tanja Kunej and
Dusanka Janezic},
title = {GenProBiS: web server for mapping of sequence variants to protein
binding sites},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W253--W259},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx420},
doi = {10.1093/NAR/GKX420},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KoncSEKJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KoscielnyACCFGH17,
author = {Gautier Koscielny and
Peter An and
Denise Carvalho{-}Silva and
Jennifer A. Cham and
Luca Fumis and
Rippa Gasparyan and
Samiul Hasan and
Nikiforos Karamanis and
Michael Maguire and
Eliseo Papa and
Andrea Pierleoni and
Miguel Pignatelli and
Theo Platt and
Francis Rowland and
Priyanka Wankar and
A. Patr{\'{\i}}cia Bento and
Tony Burdett and
Antonio Fabregat and
Simon A. Forbes and
Anna Gaulton and
Cristina Yenyxe Gonz{\'{a}}lez and
Henning Hermjakob and
Anne Hersey and
Steven Jupe and
Senay Kafkas and
Maria Keays and
Catherine Leroy and
Francisco{-}Javier Lopez and
Mar{\'{\i}}a P. Magari{\~{n}}os and
James Malone and
Johanna R. McEntyre and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Claire O'Donovan and
Irene Papatheodorou and
Helen E. Parkinson and
Barbara Palka and
Justin E. Paschall and
Robert Petryszak and
Naruemon Pratanwanich and
Sirarat Sarntivijai and
Gary Saunders and
Konstantinos Sidiropoulos and
Thomas Smith and
Zbyslaw Sondka and
Oliver Stegle and
Y. Amy Tang and
Edward Turner and
Brendan W. Vaughan and
Olga Vrousgou and
Xavier Watkins and
Maria Jesus Martin and
Philippe Sanseau and
Jessica Vamathevan and
Ewan Birney and
Jeffrey Barrett and
Ian Dunham},
title = {Open Targets: a platform for therapeutic target identification and
validation},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D985--D994},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1055},
doi = {10.1093/NAR/GKW1055},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KoscielnyACCFGH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KoumakisRP17,
author = {Lefteris Koumakis and
Panos Roussos and
George Potamias},
title = {minepath.org: a free interactive pathway analysis web server},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W116--W121},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx278},
doi = {10.1093/NAR/GKX278},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KoumakisRP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Kozlowski17,
author = {Lukasz Pawel Kozlowski},
title = {Proteome-pI: proteome isoelectric point database},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D1112--D1116},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw978},
doi = {10.1093/NAR/GKW978},
timestamp = {Wed, 28 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Kozlowski17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KrausNJTSFUN17,
author = {Milena Kraus and
Julian Niedermeier and
Marcel Jankrift and
S{\"{o}}ren Tietb{\"{o}}hl and
Toni Stachewicz and
Hendrik Folkerts and
Matthias Uflacker and
Mariana L. Neves},
title = {Olelo: a web application for intuitive exploration of biomedical literature},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W478--W483},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx363},
doi = {10.1093/NAR/GKX363},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KrausNJTSFUN17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KreftSHBSB17,
author = {Lukasz Kreft and
Arne Soete and
Paco Hulpiau and
Alexander Botzki and
Yvan Saeys and
Pieter J. De Bleser},
title = {ConTra v3: a tool to identify transcription factor binding sites across
species, update 2017},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W490--W494},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx376},
doi = {10.1093/NAR/GKX376},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KreftSHBSB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KristensenWK17,
author = {David M. Kristensen and
Yuri I. Wolf and
Eugene V. Koonin},
title = {{ATGC} database and ATGC-COGs: an updated resource for micro- and
macro-evolutionary studies of prokaryotic genomes and protein family
annotation},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D210--D218},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw934},
doi = {10.1093/NAR/GKW934},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KristensenWK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KrystkowiakD17,
author = {Izabella Krystkowiak and
Norman E. Davey},
title = {SLiMSearch: a framework for proteome-wide discovery and annotation
of functional modules in intrinsically disordered regions},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W464--W469},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx238},
doi = {10.1093/NAR/GKX238},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KrystkowiakD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KumarAB17,
author = {Sunil Kumar and
Giovanna Ambrosini and
Philipp Bucher},
title = {{SNP2TFBS} - a database of regulatory SNPs affecting predicted transcription
factor binding site affinity},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D139--D144},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1064},
doi = {10.1093/NAR/GKW1064},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KumarAB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LabbePJDBVPM17,
author = {C{\'{e}}line M. Labb{\'{e}} and
Tania Pencheva and
Dessislava Jereva and
Dimitri Desvillechabrol and
J{\'{e}}r{\^{o}}me B{\'{e}}cot and
Bruno O. Villoutreix and
Ilza Pajeva and
Maria A. Miteva},
title = {{AMMOS2:} a web server for protein-ligand-water complexes refinement
via molecular mechanics},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W350--W355},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx397},
doi = {10.1093/NAR/GKX397},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LabbePJDBVPM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LacznyKGFBK17,
author = {Cedric Christian Laczny and
Christina Kiefer and
Valentina Galata and
Tobias Fehlmann and
Christina Backes and
Andreas Keller},
title = {BusyBee Web: metagenomic data analysis by bootstrapped supervised
binning and annotation},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W171--W179},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx348},
doi = {10.1093/NAR/GKX348},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LacznyKGFBK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LakinDNDRDRAJRB17,
author = {Steven M. Lakin and
Christopher J. Dean and
Noelle R. Noyes and
Adam Dettenwanger and
Anne Spencer Ross and
Enrique Doster and
Pablo Rovira and
Zaid Abdo and
Kenneth L. Jones and
Jaime Ruiz and
Keith E. Belk and
Paul S. Morley and
Christina Boucher},
title = {MEGARes: an antimicrobial resistance database for high throughput
sequencing},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D574--D580},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1009},
doi = {10.1093/NAR/GKW1009},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LakinDNDRDRAJRB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LeaGPRF17,
author = {Isabel A. Lea and
Hui Gong and
Anand Paleja and
Asif Rashid and
Jennifer Fostel},
title = {{CEBS:} a comprehensive annotated database of toxicological data},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D964--D971},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1077},
doi = {10.1093/NAR/GKW1077},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LeaGPRF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LebronGCBBHO17,
author = {Ricardo Lebr{\'{o}}n and
Cristina G{\'{o}}mez{-}Mart{\'{\i}}n and
Pedro Carpena and
Pedro Bernaola{-}Galv{\'{a}}n and
Guillermo Barturen and
Michael Hackenberg and
Jos{\'{e}} L. Oliver},
title = {NGSmethDB 2017: enhanced methylomes and differential methylation},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D97--D103},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw996},
doi = {10.1093/NAR/GKW996},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LebronGCBBHO17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LeeLYJCKJKKLKL17,
author = {Myunggyo Lee and
Kyubum Lee and
Namhee Yu and
Insu Jang and
Ikjung Choi and
Pora Kim and
Ye Eun Jang and
Byounggun Kim and
Sunkyu Kim and
Byungwook Lee and
Jaewoo Kang and
Sanghyuk Lee},
title = {ChimerDB 3.0: an enhanced database for fusion genes from cancer transcriptome
and literature data mining},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D784--D789},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1083},
doi = {10.1093/NAR/GKW1083},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LeeLYJCKJKKLKL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LeporeOMT17,
author = {Rosalba Lepore and
Pier Paolo Olimpieri and
Mario Abdel Messih and
Anna Tramontano},
title = {PIGSPro: prediction of immunoGlobulin structures v2},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W17--W23},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx334},
doi = {10.1093/NAR/GKX334},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/LeporeOMT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiCLBY17,
author = {Hongchun Li and
Yuan{-}Yu Chang and
Ji Young Lee and
Ivet Bahar and
Lee{-}Wei Yang},
title = {DynOmics: dynamics of structural proteome and beyond},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W374--W380},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx385},
doi = {10.1093/NAR/GKX385},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LiCLBY17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiSZLDUZX17,
author = {Shujing Li and
Ke Shui and
Ying Zhang and
Yongqiang Lv and
Wankun Deng and
Shahid Ullah and
Luoying Zhang and
Yu Xue},
title = {{CGDB:} a database of circadian genes in eukaryotes},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D397--D403},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1028},
doi = {10.1093/NAR/GKW1028},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LiSZLDUZX17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiTXP17,
author = {Peng Li and
Ronald G. Tompkins and
Wenzhong Xiao},
title = {{KERIS:} kaleidoscope of gene responses to inflammation between species},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D908--D914},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw974},
doi = {10.1093/NAR/GKW974},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LiTXP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiTYLCLCXLZ17,
author = {Bo Li and
Jing Tang and
Qingxia Yang and
Shuang Li and
Xuejiao Cui and
Yinghong Li and
Yuzong Chen and
Weiwei Xue and
Xiaofeng Li and
Feng Zhu},
title = {{NOREVA:} normalization and evaluation of MS-based metabolomics data},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W162--W170},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx449},
doi = {10.1093/NAR/GKX449},
timestamp = {Fri, 29 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/LiTYLCLCXLZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiYHLLXQPXWYTKS17,
author = {Mulin Jun Li and
Hongcheng Yao and
Dandan Huang and
Huanhuan Liu and
Zipeng Liu and
Hang Xu and
Yiming Qin and
Jeanette Prinz and
Weiyi Xia and
Panwen Wang and
Bin Yan and
Nhan L. Tran and
Jean{-}Pierre A. Kocher and
Pak Chung Sham and
Junwen Wang},
title = {mTCTScan: a comprehensive platform for annotation and prioritization
of mutations affecting drug sensitivity in cancers},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W215--W221},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx400},
doi = {10.1093/NAR/GKX400},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LiYHLLXQPXWYTKS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LizioHANKSMAMML17,
author = {Marina Lizio and
Jayson Harshbarger and
Imad Abugessaisa and
Shuei Noguchi and
Atsushi Kondo and
Jessica Severin and
Chris Mungall and
David J. Arenillas and
Anthony Mathelier and
Yulia A. Medvedeva and
Andreas Lennartsson and
Finn Drabl{\o}s and
Jordan A. Ramilowski and
Owen J. L. Rackham and
Julian Gough and
Robin Andersson and
Albin Sandelin and
Hans Ienasescu and
Hiromasa Ono and
Hidemasa Bono and
Yoshihide Hayashizaki and
Piero Carninci and
Alistair R. R. Forrest and
Takeya Kasukawa and
Hideya Kawaji},
title = {Update of the {FANTOM} web resource: high resolution transcriptome
of diverse cell types in mammals},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D737--D743},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw995},
doi = {10.1093/NAR/GKW995},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LizioHANKSMAMML17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LomizeLKP17,
author = {Andrei L. Lomize and
Mikhail A. Lomize and
Shean R. Krolicki and
Irina D. Pogozheva},
title = {Membranome: a database for proteome-wide analysis of single-pass membrane
proteins},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D250--D255},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw712},
doi = {10.1093/NAR/GKW712},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LomizeLKP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Lopez-FerrandoG17,
author = {V{\'{\i}}ctor L{\'{o}}pez{-}Ferrando and
Andrea M. Gazzo and
Xavier de la Cruz and
Modesto Orozco and
Josep Lluis Gelp{\'{\i}}},
title = {PMut: a web-based tool for the annotation of pathological variants
on proteins, 2017 update},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W222--W228},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx313},
doi = {10.1093/NAR/GKX313},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Lopez-FerrandoG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LopezCHKTFBBRGR17,
author = {Javier L{\'{o}}pez and
Jacobo Coll and
Matthias Haimel and
Swaathi Kandasamy and
Joaqu{\'{\i}}n T{\'{a}}rraga and
Pedro Furi{\'{o}}{-}Tar{\'{\i}} and
Wasim Bari and
Marta Bleda and
Antonio Rueda and
Stefan Gr{\"{a}}f and
Augusto Rendon and
Joaqu{\'{\i}}n Dopazo and
Ignacio Medina},
title = {{HGVA:} the Human Genome Variation Archive},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W189--W194},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx445},
doi = {10.1093/NAR/GKX445},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/LopezCHKTFBBRGR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LuQCBZ17,
author = {Yiming Lu and
Cheng Quan and
Hebing Chen and
Xiaochen Bo and
Chenggang Zhang},
title = {3DSNP: a database for linking human noncoding SNPs to their three-dimensional
interacting genes},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D643--D649},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1022},
doi = {10.1093/NAR/GKW1022},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/LuQCBZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LuTRFWS17,
author = {Yang Young Lu and
Kujin Tang and
Jie Ren and
Jed A. Fuhrman and
Michael S. Waterman and
Fengzhu Sun},
title = {{CAFE:} aCcelerated Alignment-FrEe sequence analysis},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W554--W559},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx351},
doi = {10.1093/NAR/GKX351},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/LuTRFWS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LundLB17,
author = {Jesper Lund and
Markus List and
Jan Baumbach},
title = {Interactive microbial distribution analysis using BioAtlas},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W509--W513},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx304},
doi = {10.1093/NAR/GKX304},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LundLB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LuoPBBB17,
author = {Weijun Luo and
Gaurav Pant and
Yeshvant K. Bhavnasi and
Steven G. Blanchard and
Cory Brouwer},
title = {Pathview Web: user friendly pathway visualization and data integration},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W501--W508},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx372},
doi = {10.1093/NAR/GKX372},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LuoPBBB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LvLSWPLS17,
author = {Qi Lv and
Yiheng Lan and
Yan Shi and
Huan Wang and
Xia Pan and
Peng Li and
Tieliu Shi},
title = {AtPID: a genome-scale resource for genotype-phenotype associations
in Arabidopsis},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D1060--D1063},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1029},
doi = {10.1093/NAR/GKW1029},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LvLSWPLS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MacArthurBCGHHJ17,
author = {Jacqueline A. L. MacArthur and
Emily Bowler and
Maria Cerezo and
Laurent Gil and
Peggy Hall and
Emma Hastings and
Heather Junkins and
Aoife McMahon and
Annalisa Milano and
Joannella Morales and
Zo{\"{e}} May Pendlington and
Danielle Welter and
Tony Burdett and
Lucia Hindorff and
Paul Flicek and
Fiona Cunningham and
Helen E. Parkinson},
title = {The new {NHGRI-EBI} Catalog of published genome-wide association studies
{(GWAS} Catalog)},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D896--D901},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1133},
doi = {10.1093/NAR/GKW1133},
timestamp = {Mon, 26 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MacArthurBCGHHJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MaccariRBGGKHGF17,
author = {Giuseppe Maccari and
James Robinson and
Keith Ballingall and
Lisbeth A. Guethlein and
Unni Grimholt and
Jim Kaufman and
Chak{-}Sum Ho and
Natasja de Groot and
Paul Flicek and
Ronald Bontrop and
John A. Hammond and
Steven G. E. Marsh},
title = {{IPD-MHC} 2.0: an improved inter-species database for the study of
the major histocompatibility complex},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D860--D864},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1050},
doi = {10.1093/NAR/GKW1050},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MaccariRBGGKHGF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MaghrabiM17,
author = {Ali H. A. Maghrabi and
Liam J. McGuffin},
title = {ModFOLD6: an accurate web server for the global and local quality
estimation of 3D protein models},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W416--W421},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx332},
doi = {10.1093/NAR/GKX332},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MaghrabiM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MannWB17,
author = {Martin Mann and
Patrick R. Wright and
Rolf Backofen},
title = {IntaRNA 2.0: enhanced and customizable prediction of {RNA-RNA} interactions},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W435--W439},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx279},
doi = {10.1093/NAR/GKX279},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MannWB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MansuetoFBDACSP17,
author = {Locedie Mansueto and
Roven Rommel Fuentes and
Frances Nikki Borja and
Jeffery Detras and
Juan Miguel Abriol{-}Santos and
Dmytro Chebotarov and
Millicent Sanciangco and
Kevin Palis and
Dario Copetti and
Alexandre Poliakov and
Inna Dubchak and
Victor V. Solovyev and
Rod A. Wing and
Ruaraidh Sackville Hamilton and
Ramil Mauleon and
Kenneth L. McNally and
Nickolai Alexandrov},
title = {Rice SNP-seek database update: new SNPs, indels, and queries},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D1075--D1081},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1135},
doi = {10.1093/NAR/GKW1135},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MansuetoFBDACSP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Marchler-BauerY17,
author = {Aron Marchler{-}Bauer and
Bo Yu and
Lianyi Han and
Jane He and
Christopher J. Lanczycki and
Shennan Lu and
Farideh Chitsaz and
Myra K. Derbyshire and
Renata C. Geer and
Noreen R. Gonzales and
Marc Gwadz and
David I. Hurwitz and
Fu Lu and
Gabriele H. Marchler and
James S. Song and
Narmada Thanki and
Zhouxi Wang and
Roxanne A. Yamashita and
Dachuan Zhang and
Chanjuan Zheng and
Lewis Y. Geer and
Stephen H. Bryant},
title = {{CDD/SPARCLE:} functional classification of proteins via subfamily
domain architectures},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D200--D203},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1129},
doi = {10.1093/NAR/GKW1129},
timestamp = {Tue, 26 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Marchler-BauerY17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MashimaKFKOKOON17,
author = {Jun Mashima and
Yuichi Kodama and
Takatomo Fujisawa and
Toshiaki Katayama and
Yoshihiro Okuda and
Eli Kaminuma and
Osamu Ogasawara and
Kousaku Okubo and
Yasukazu Nakamura and
Toshihisa Takagi},
title = {{DNA} Data Bank of Japan},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D25--D31},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1001},
doi = {10.1093/NAR/GKW1001},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MashimaKFKOKOON17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MateoGPD0A17,
author = {Lidia Mateo and
Oriol Guitart{-}Pla and
Carles Pons and
Miquel Duran{-}Frigola and
Roberto Mosca and
Patrick Aloy},
title = {A PanorOmic view of personal cancer genomes},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W195--W200},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx311},
doi = {10.1093/NAR/GKX311},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MateoGPD0A17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MeiQWSZZZWSTLBM17,
author = {Shenglin Mei and
Qian Qin and
Qiu Wu and
Hanfei Sun and
Rongbin Zheng and
Chongzhi Zang and
Muyuan Zhu and
Jiaxin Wu and
Xiaohui Shi and
Len Taing and
Tao Liu and
Myles Brown and
Clifford A. Meyer and
Xiaole Shirley Liu},
title = {Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility
data in human and mouse},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D658--D662},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw983},
doi = {10.1093/NAR/GKW983},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MeiQWSZZZWSTLBM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MendeLHLFSB17,
author = {Daniel R. Mende and
Ivica Letunic and
Jaime Huerta{-}Cepas and
Simone S. Li and
Kristoffer Forslund and
Shinichi Sunagawa and
Peer Bork},
title = {proGenomes: a resource for consistent functional and taxonomic annotations
of prokaryotic genomes},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D529--D534},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw989},
doi = {10.1093/NAR/GKW989},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MendeLHLFSB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MiHMTMKT17,
author = {Huaiyu Mi and
Xiaosong Huang and
Anushya Muruganujan and
Haiming Tang and
Caitlin Mills and
Diane Kang and
Paul D. Thomas},
title = {{PANTHER} version 11: expanded annotation data from Gene Ontology
and Reactome pathways, and data analysis tool enhancements},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D183--D189},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1138},
doi = {10.1093/NAR/GKW1138},
timestamp = {Tue, 19 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MiHMTMKT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MirditaDGMSS17,
author = {Milot Mirdita and
Lars von den Driesch and
Clovis Galiez and
Maria Jesus Martin and
Johannes S{\"{o}}ding and
Martin Steinegger},
title = {Uniclust databases of clustered and deeply annotated protein sequences
and alignments},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D170--D176},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1081},
doi = {10.1093/NAR/GKW1081},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MirditaDGMSS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MiskeiAF17,
author = {M{\'{a}}rton Miskei and
Csaba Antal and
M{\'{o}}nika Fuxreiter},
title = {FuzDB: database of fuzzy complexes, a tool to develop stochastic structure-function
relationships for protein complexes and higher-order assemblies},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D228--D235},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1019},
doi = {10.1093/NAR/GKW1019},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MiskeiAF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MonteiroPCMST17,
author = {Pedro Tiago Monteiro and
Pedro Pais and
Catarina Costa and
Sauvagya Manna and
Isabel S{\'{a}}{-}Correia and
Miguel Cacho Teixeira},
title = {The PathoYeastract database: an information system for the analysis
of gene and genomic transcription regulation in pathogenic yeasts},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D597--D603},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw817},
doi = {10.1093/NAR/GKW817},
timestamp = {Thu, 04 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MonteiroPCMST17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MoraesPPI17,
author = {Jo{\~{a}}o P. A. Moraes and
Gisele L. Pappa and
Douglas E. V. Pires and
Sandro C. Izidoro},
title = {{GASS-WEB:} a web server for identifying enzyme active sites based
on genetic algorithms},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W315--W319},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx337},
doi = {10.1093/NAR/GKX337},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MoraesPPI17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MorgatLAANHCPPM17,
author = {Anne Morgat and
Thierry Lombardot and
Kristian B. Axelsen and
Lucila Aimo and
Anne Niknejad and
Nevila Hyka{-}Nouspikel and
Elisabeth Coudert and
Monica Pozzato and
Marco Pagni and
S{\'{e}}bastien Moretti and
Steven Rosanoff and
Joseph Onwubiko and
Lydie Bougueleret and
Ioannis Xenarios and
Nicole Redaschi and
Alan J. Bridge},
title = {Updates in Rhea - an expert curated resource of biochemical reactions},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D415--D418},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw990},
doi = {10.1093/NAR/GKW990},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MorgatLAANHCPPM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MukherjeeSBOVIT17,
author = {Supratim Mukherjee and
Dimitri Stamatis and
Jon Bertsch and
Galina Ovchinnikova and
Olena Verezemska and
Michelle Isbandi and
Alex D. Thomas and
Rida Ali and
Kaushal Sharma and
Nikos Kyrpides and
T. B. K. Reddy},
title = {Genomes OnLine Database {(GOLD)} v.6: data updates and feature enhancements},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D446--D456},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw992},
doi = {10.1093/NAR/GKW992},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MukherjeeSBOVIT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MullerJKHDBB17,
author = {Heiko M{\"{u}}ller and
Ra{\'{u}}l Jim{\'{e}}nez{-}Heredia and
Ana Krolo and
Tatjana Hirschmugl and
Jasmin Dmytrus and
Kaan Boztug and
Christoph Bock},
title = {VCF.Filter: interactive prioritization of disease-linked genetic variants
from sequencing data},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W567--W572},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx425},
doi = {10.1093/NAR/GKX425},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MullerJKHDBB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MungallM0BBBCCD17,
author = {Christopher J. Mungall and
Julie A. McMurry and
Sebastian K{\"{o}}hler and
James P. Balhoff and
Charles D. Borromeo and
Matthew H. Brush and
Seth Carbon and
Tom Conlin and
Nathan A. Dunn and
Mark Engelstad and
Erin Foster and
Jean{-}Philippe F. Gourdine and
Julius O. B. Jacobsen and
Dan Keith and
Bryan Laraway and
Suzanna E. Lewis and
Jeremy NguyenXuan and
Kent A. Shefchek and
Nicole A. Vasilevsky and
Zhou Yuan and
Nicole L. Washington and
Harry Hochheiser and
Tudor Groza and
Damian Smedley and
Peter N. Robinson and
Melissa A. Haendel},
title = {The Monarch Initiative: an integrative data and analytic platform
connecting phenotypes to genotypes across species},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D712--D722},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1128},
doi = {10.1093/NAR/GKW1128},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MungallM0BBBCCD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MusilSBBPZMBD17,
author = {Milos Musil and
Jan Stourac and
Jaroslav Bendl and
Jan Brezovsky and
Zbynek Prokop and
Jaroslav Zendulka and
Tom{\'{a}}s Mart{\'{\i}}nek and
David Bednar and
Jir{\'{\i}} Damborsk{\'{y}}},
title = {FireProt: web server for automated design of thermostable proteins},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W393--W399},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx285},
doi = {10.1093/NAR/GKX285},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MusilSBBPZMBD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NaithaniPDGADWF17,
author = {Sushma Naithani and
Justin Preece and
Peter D'Eustachio and
Parul Gupta and
Vindhya Amarasinghe and
Palitha Dharmawardhana and
Guanming Wu and
Antonio Fabregat and
Justin Elser and
Joel Weiser and
Maria Keays and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Robert Petryszak and
Lincoln D. Stein and
Doreen Ware and
Pankaj Jaiswal},
title = {Plant Reactome: a resource for plant pathways and comparative analysis},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D1029--D1039},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw932},
doi = {10.1093/NAR/GKW932},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NaithaniPDGADWF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NataleABBCCCCDD17,
author = {Darren A. Natale and
Cecilia N. Arighi and
Judith A. Blake and
Jonathan P. Bona and
Chuming Chen and
Sheng{-}Chih Chen and
Karen R. Christie and
Julie Cowart and
Peter D'Eustachio and
Alexander D. Diehl and
Harold J. Drabkin and
William D. Duncan and
Hongzhan Huang and
Jia Ren and
Karen Ross and
Alan Ruttenberg and
Veronica Shamovsky and
Barry Smith and
Qinghua Wang and
Jian Zhang and
Abdelrahman Elsayed and
Cathy H. Wu},
title = {Protein Ontology {(PRO):} enhancing and scaling up the representation
of protein entities},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D339--D346},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1075},
doi = {10.1093/NAR/GKW1075},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NataleABBCCCCDD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NeveuMRWPKWS17,
author = {Vanessa Neveu and
Alice Moussy and
H{\'{e}}lo{\"{\i}}se Rouaix and
Roland Wedekind and
Allison Pon and
Craig Knox and
David S. Wishart and
Augustin Scalbert},
title = {Exposome-Explorer: a manually-curated database on biomarkers of exposure
to dietary and environmental factors},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D979--D984},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw980},
doi = {10.1093/NAR/GKW980},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/NeveuMRWPKWS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NguyenMBBFGHHJK17,
author = {Dac{-}Trung Nguyen and
Stephen L. Mathias and
Cristian Bologa and
S{\o}ren Brunak and
Nicolas F. Fernandez and
Anna Gaulton and
Anne Hersey and
Jayme Holmes and
Lars Juhl Jensen and
Anneli Karlsson and
Guixia Liu and
Avi Ma'ayan and
Geetha Mandava and
Subramani Mani and
Saurabh Mehta and
John P. Overington and
Juhee Patel and
Andrew D. Rouillard and
Stephan C. Sch{\"{u}}rer and
Timothy Sheils and
Anton Simeonov and
Larry A. Sklar and
Noel Southall and
Oleg Ursu and
Dusica Vidovic and
Anna Waller and
Jeremy J. Yang and
Ajit Jadhav and
Tudor I. Oprea and
Rajarshi Guha},
title = {Pharos: Collating protein information to shed light on the druggable
genome},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D995--D1002},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1072},
doi = {10.1093/NAR/GKW1072},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NguyenMBBFGHHJK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NightingaleAABG17,
author = {Andrew Nightingale and
Ricardo Antunes and
Emanuele Alpi and
Borisas Bursteinas and
Leonardo Gonzales and
Wudong Liu and
Jie Luo and
Guoying Qi and
Edd Turner and
Maria Jesus Martin},
title = {The Proteins {API:} accessing key integrated protein and genome information},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W539--W544},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx237},
doi = {10.1093/NAR/GKX237},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NightingaleAABG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NingYWLZZZGGZLL17,
author = {Shangwei Ning and
Ming Yue and
Peng Wang and
Yue Liu and
Hui Zhi and
Yan Zhang and
Jizhou Zhang and
Yue Gao and
Maoni Guo and
Dianshuang Zhou and
Xin Li and
Xia Li},
title = {LincSNP 2.0: an updated database for linking disease-associated SNPs
to human long non-coding RNAs and their TFBSs},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D74--D78},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw945},
doi = {10.1093/NAR/GKW945},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NingYWLZZZGGZLL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Ochoa-MontanoB17,
author = {Bernardo Ochoa{-}Monta{\~{n}}o and
Tom L. Blundell},
title = {XSuLT: a web server for structural annotation and representation of
sequence-structure alignments},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W381--W387},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx421},
doi = {10.1093/NAR/GKX421},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Ochoa-MontanoB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/OkudaWMKYMTKAYT17,
author = {Shujiro Okuda and
Yu Watanabe and
Yuki Moriya and
Shin Kawano and
Tadashi Yamamoto and
Masaki Matsumoto and
Tomoyo Takami and
Daiki Kobayashi and
Norie Araki and
Akiyasu C. Yoshizawa and
Tsuyoshi Tabata and
Naoyuki Sugiyama and
Susumu Goto and
Yasushi Ishihama},
title = {jPOSTrepo: an international standard data repository for proteomes},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D1107--D1111},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1080},
doi = {10.1093/NAR/GKW1080},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/OkudaWMKYMTKAYT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/OngXZLLZMCRH17,
author = {Edison Ong and
Zuoshuang Xiang and
Bin Zhao and
Yue Liu and
Yu Lin and
Jie Zheng and
Chris Mungall and
M{\'{e}}lanie Courtot and
Alan Ruttenberg and
Yongqun He},
title = {Ontobee: {A} linked ontology data server to support ontology term
dereferencing, linkage, query and integration},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D347--D352},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw918},
doi = {10.1093/NAR/GKW918},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/OngXZLLZMCRH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/OteriNCC17,
author = {Francesco Oteri and
Francesca Nadalin and
Rapha{\"{e}}l Champeimont and
Alessandra Carbone},
title = {BIS2Analyzer: a server for co-evolution analysis of conserved protein
families},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W307--W314},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx336},
doi = {10.1093/NAR/GKX336},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/OteriNCC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Paez-EspinoCPRC17,
author = {David P{\'{a}}ez{-}Espino and
I{-}Min A. Chen and
Krishna Palaniappan and
Anna Ratner and
Ken Chu and
Ernest Szeto and
Manoj Pillay and
Jinghua Huang and
Victor M. Markowitz and
Torben Nielsen and
Marcel Huntemann and
T. B. K. Reddy and
Georgios A. Pavlopoulos and
Matthew B. Sullivan and
Barbara J. Campbell and
Feng Chen and
Katherine D. McMahon and
Steven J. Hallam and
Vincent J. Denef and
Ricardo Cavicchioli and
Sean M. Caffrey and
Wolfgang R. Streit and
John Webster and
Kim M. Handley and
Ghasem H. Salekdeh and
Nicolas Tsesmetzis and
Jo{\~{a}}o C. Setubal and
Phillip B. Pope and
Wen{-}Tso Liu and
Adam R. Rivers and
Natalia Ivanova and
Nikos Kyrpides},
title = {{IMG/VR:} a database of cultured and uncultured {DNA} Viruses and
retroviruses},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D457--D465},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1030},
doi = {10.1093/NAR/GKW1030},
timestamp = {Sat, 19 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Paez-EspinoCPRC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PaladinHPAKT17,
author = {Lisanna Paladin and
Layla Hirsh and
Damiano Piovesan and
Miguel A. Andrade{-}Navarro and
Andrey V. Kajava and
Silvio C. E. Tosatto},
title = {RepeatsDB 2.0: improved annotation, classification, search and visualization
of repeat protein structures},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D308--D312},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1136},
doi = {10.1093/NAR/GKW1136},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PaladinHPAKT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PaladinPT17,
author = {Lisanna Paladin and
Damiano Piovesan and
Silvio C. E. Tosatto},
title = {{SODA:} prediction of protein solubility from disorder and aggregation
propensity},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W236--W240},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx412},
doi = {10.1093/NAR/GKX412},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PaladinPT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PanduranganOAB17,
author = {Arun Prasad Pandurangan and
Bernardo Ochoa{-}Monta{\~{n}}o and
David B. Ascher and
Tom L. Blundell},
title = {{SDM:} a server for predicting effects of mutations on protein stability},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W229--W235},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx439},
doi = {10.1093/NAR/GKX439},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PanduranganOAB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PapoutsoglouALX17,
author = {Giorgos Papoutsoglou and
Giorgos Athineou and
Vincenzo Lagani and
Iordanis Xanthopoulos and
Angelika Schmidt and
Szabolcs Elias and
Jesper Tegn{\'{e}}r and
Ioannis Tsamardinos},
title = {{SCENERY:} a web application for (causal) network reconstruction from
cytometry data},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W270--W275},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx448},
doi = {10.1093/NAR/GKX448},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/PapoutsoglouALX17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ParkSBGL17,
author = {Young Mi Park and
Silvano Squizzato and
Nicola Buso and
Tamer Gur and
Rodrigo Lopez},
title = {The {EBI} search engine: {EBI} search as a service - making biological
data accessible for all},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W545--W549},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx359},
doi = {10.1093/NAR/GKX359},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ParkSBGL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PenzkoferJFBMRZ17,
author = {Tobias Penzkofer and
Marten J{\"{a}}ger and
Marek Figlerowicz and
Richard Badge and
Stefan Mundlos and
Peter N. Robinson and
Tomasz Zemojtel},
title = {L1Base 2: more retrotransposition-active LINE-1s, more mammalian genomes},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D68--D73},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw925},
doi = {10.1093/NAR/GKW925},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PenzkoferJFBMRZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PicardiDGP17,
author = {Ernesto Picardi and
Anna Maria D'Erchia and
Claudio Lo Giudice and
Graziano Pesole},
title = {REDIportal: a comprehensive database of A-to-I {RNA} editing events
in humans},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D750--D757},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw767},
doi = {10.1093/NAR/GKW767},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/PicardiDGP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PineroBQGDCGSF17,
author = {Janet Pi{\~{n}}ero Gonz{\'{a}}lez and
{\`{A}}lex Bravo and
N{\'{u}}ria Queralt{-}Rosinach and
Alba Guti{\'{e}}rrez{-}Sacrist{\'{a}}n and
Jordi Deu{-}Pons and
Emilio Centeno and
Javier Garc{\'{\i}}a{-}Garc{\'{\i}}a and
Ferran Sanz and
Laura I. Furlong},
title = {DisGeNET: a comprehensive platform integrating information on human
disease-associated genes and variants},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D833--D839},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw943},
doi = {10.1093/NAR/GKW943},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PineroBQGDCGSF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PiovesanTMNQOAD17,
author = {Damiano Piovesan and
Francesco Tabaro and
Ivan Micetic and
Marco Necci and
Federica Quaglia and
Christopher J. Oldfield and
Maria Cristina Aspromonte and
Norman E. Davey and
Radoslav Davidovic and
Zsuzsanna Doszt{\'{a}}nyi and
Arne Elofsson and
Alessandra Gasparini and
Andr{\'{a}}s Hatos and
Andrey V. Kajava and
Lajos Kalm{\'{a}}r and
Emanuela Leonardi and
Tamas Lazar and
Sandra Macedo{-}Ribeiro and
Mauricio Macossay{-}Castillo and
Attila Meszaros and
Giovanni Minervini and
Nikoletta Murvai and
Jordi Pujols and
Daniel B. Roche and
Edoardo Salladini and
{\'{E}}va Sch{\'{a}}d and
Antoine Schramm and
Be{\'{a}}ta Szab{\'{o}} and
{\'{A}}gnes Tantos and
Fiorella Tonello and
Konstantinos D. Tsirigos and
Nevena Veljkovic and
Salvador Ventura and
Wim F. Vranken and
Per Warholm and
Vladimir N. Uversky and
A. Keith Dunker and
Sonia Longhi and
Peter Tompa and
Silvio C. E. Tosatto},
title = {DisProt 7.0: a major update of the database of disordered proteins},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D219--D227},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1056},
doi = {10.1093/NAR/GKW1056},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PiovesanTMNQOAD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PiresA17,
author = {Douglas E. V. Pires and
David B. Ascher},
title = {mCSM-NA: predicting the effects of mutations on protein-nucleic acids
interactions},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W241--W246},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx236},
doi = {10.1093/NAR/GKX236},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PiresA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PlaczekSCJUTS17,
author = {Sandra Placzek and
Ida Schomburg and
Antje Chang and
Lisa Jeske and
Marcus Ulbrich and
Jana Tillack and
Dietmar Schomburg},
title = {{BRENDA} in 2017: new perspectives and new tools in {BRENDA}},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D380--D388},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw952},
doi = {10.1093/NAR/GKW952},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PlaczekSCJUTS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ProfitiMC17,
author = {Giuseppe Profiti and
Pier Luigi Martelli and
Rita Casadio},
title = {The Bologna Annotation Resource {(BAR} 3.0): improving protein functional
annotation},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W285--W290},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx330},
doi = {10.1093/NAR/GKX330},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ProfitiMC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PrytuliakVMH17,
author = {Roman Prytuliak and
Michael Volkmer and
Markus Meier and
Bianca Habermann},
title = {HH-MOTiF: de novo detection of short linear motifs in proteins by
Hidden Markov Model comparisons},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W470--W477},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx341},
doi = {10.1093/NAR/GKX341},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PrytuliakVMH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PuccioGLSLBBFP17,
author = {Simone Puccio and
Giorgio Grillo and
Flavio Licciulli and
Marco Severgnini and
Sabino Liuni and
Silvio Bicciato and
Gianluca De Bellis and
Francesco Ferrari and
Clelia Peano},
title = {WoPPER: Web server for Position Related data analysis of gene Expression
in Prokaryotes},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W109--W115},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx329},
doi = {10.1093/NAR/GKX329},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PuccioGLSLBBFP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RahmatiAPJ17,
author = {Sara Rahmati and
Mark Abovsky and
Chiara Pastrello and
Igor Jurisica},
title = {pathDIP: an annotated resource for known and predicted human gene-pathway
associations and pathway enrichment analysis},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D419--D426},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1082},
doi = {10.1093/NAR/GKW1082},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RahmatiAPJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RaimondiTFGOLRV17,
author = {Daniele Raimondi and
Ibrahim Tanyalcin and
Julien Fert{\'{e}} and
Andrea M. Gazzo and
Gabriele Orlando and
Tom Lenaerts and
Marianne Rooman and
Wim F. Vranken},
title = {{DEOGEN2:} prediction and interactive visualization of single amino
acid variant deleteriousness in human proteins},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W201--W206},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx390},
doi = {10.1093/NAR/GKX390},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RaimondiTFGOLRV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Ramirez-GaonaMP17,
author = {Miguel Ramirez{-}Gaona and
Ana Marcu and
Allison Pon and
An Chi Guo and
Tanvir Sajed and
Noah A. Wishart and
Naama Karu and
Yannick Djoumbou Feunang and
David Arndt and
David S. Wishart},
title = {{YMDB} 2.0: a significantly expanded version of the yeast metabolome
database},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D440--D445},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1058},
doi = {10.1093/NAR/GKW1058},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Ramirez-GaonaMP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RappaportTPNSLG17,
author = {Noa Rappaport and
Michal Twik and
Inbar Plaschkes and
Ron Nudel and
Tsippi Iny Stein and
Jacob Levitt and
Moran Gershoni and
C. Paul Morrey and
Marilyn Safran and
Doron Lancet},
title = {MalaCards: an amalgamated human disease compendium with diverse clinical
and genetic annotation and structured search},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D877--D887},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1012},
doi = {10.1093/NAR/GKW1012},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RappaportTPNSLG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RauscherHBWB17,
author = {Benedikt Rauscher and
Florian Heigwer and
Marco Breinig and
Jan Winter and
Michael Boutros},
title = {GenomeCRISPR - a database for high-throughput CRISPR/Cas9 screens},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D679--D686},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw997},
doi = {10.1093/NAR/GKW997},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/RauscherHBWB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RavikumarAPA17,
author = {Balaguru Ravikumar and
Zaid Alam and
Gopal Peddinti and
Tero Aittokallio},
title = {{C-SPADE:} a web-tool for interactive analysis and visualization of
drug screening experiments through compound-specific bioactivity dendrograms},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W495--W500},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx384},
doi = {10.1093/NAR/GKX384},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RavikumarAPA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RipocheLCC17,
author = {Hugues Ripoche and
Elodie Laine and
Nicoletta Ceres and
Alessandra Carbone},
title = {{JET2} Viewer: a database of predicted multiple, possibly overlapping,
protein-protein interaction sites for {PDB} structures},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D236--D242},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1053},
doi = {10.1093/NAR/GKW1053},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RipocheLCC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RosePABBCCDDFGG17,
author = {Peter W. Rose and
Andreas Prlic and
Ali Altunkaya and
Chunxiao Bi and
Anthony R. Bradley and
Cole H. Christie and
Luigi Di Costanzo and
Jose M. Duarte and
Shuchismita Dutta and
Zukang Feng and
Rachel Kramer Green and
David S. Goodsell and
Brian P. Hudson and
Tara Kalro and
Robert Lowe and
Ezra Peisach and
Christopher Randle and
Alexander S. Rose and
Chenghua Shao and
Yi{-}Ping Tao and
Yana Valasatava and
Maria Voigt and
John D. Westbrook and
Jesse Woo and
Huanwang Yang and
Jasmine Young and
Christine Zardecki and
Helen M. Berman and
Stephen K. Burley},
title = {The {RCSB} protein data bank: integrative view of protein, gene and
3D structural information},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D271--D281},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1000},
doi = {10.1093/NAR/GKW1000},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/RosePABBCCDDFGG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SagendorfBR17,
author = {Jared M. Sagendorf and
Helen M. Berman and
Remo Rohs},
title = {DNAproDB: an interactive tool for structural analysis of DNA-protein
complexes},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W89--W97},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx272},
doi = {10.1093/NAR/GKX272},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SagendorfBR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SamTTBM17,
author = {Sarah A. Sam and
Joelle Teel and
Allison N. Tegge and
Aditya Bharadwaj and
T. M. Murali},
title = {XTalkDB: a database of signaling pathway crosstalk},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D432--D439},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1037},
doi = {10.1093/NAR/GKW1037},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SamTTBM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SchaefferLCG17,
author = {R. Dustin Schaeffer and
Yuxing Liao and
Hua Cheng and
Nick V. Grishin},
title = {{ECOD:} new developments in the evolutionary classification of domains},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D296--D302},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1137},
doi = {10.1093/NAR/GKW1137},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/SchaefferLCG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SchmeierAEB17,
author = {Sebastian Schmeier and
Tanvir Alam and
Magbubah Essack and
Vladimir B. Bajic},
title = {TcoF-DB v2: update of the database of human and mouse transcription
co-factors and transcription factor interactions},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D145--D150},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1007},
doi = {10.1093/NAR/GKW1007},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SchmeierAEB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SerenGFWNBK17,
author = {{\"{U}}mit Seren and
Dominik G. Grimm and
Joffrey Fitz and
Detlef Weigel and
Magnus Nordborg and
Karsten M. Borgwardt and
Arthur Korte},
title = {AraPheno: a public database for Arabidopsis thaliana phenotypes},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D1054--D1059},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw986},
doi = {10.1093/NAR/GKW986},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/SerenGFWNBK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ShiGZ17,
author = {Maoxiang Shi and
Juntao Gao and
Michael Q. Zhang},
title = {Web3DMol: interactive protein structure visualization based on WebGL},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W523--W527},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx383},
doi = {10.1093/NAR/GKX383},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ShiGZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ShimBYLHKSML17,
author = {Jung Eun Shim and
Changbae Bang and
Sunmo Yang and
Tak Lee and
Sohyun Hwang and
Chan Yeong Kim and
Ulf Martin Singh{-}Blom and
Edward M. Marcotte and
Insuk Lee},
title = {{GWAB:} a web server for the network-based boosting of human genome-wide
association data},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W154--W161},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx284},
doi = {10.1093/NAR/GKX284},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ShimBYLHKSML17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ShuidKM17,
author = {Ahmad N. Shuid and
Robert Kempster and
Liam J. McGuffin},
title = {ReFOLD: a server for the refinement of 3D protein models guided by
accurate quality estimates},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W422--W428},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx249},
doi = {10.1093/NAR/GKX249},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ShuidKM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SkinniderMJM17,
author = {Michael A. Skinnider and
Nishanth J. Merwin and
Chad W. Johnston and
Nathan A. Magarvey},
title = {{PRISM} 3: expanded prediction of natural product chemical structures
from microbial genomes},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W49--W54},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx320},
doi = {10.1093/NAR/GKX320},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SkinniderMJM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SkrzypekBBMSS17,
author = {Marek S. Skrzypek and
Jonathan Binkley and
Gail Binkley and
Stuart R. Miyasato and
Matt Simison and
Gavin Sherlock},
title = {The Candida Genome Database {(CGD):} incorporation of Assembly 22,
systematic identifiers and visualization of high throughput sequencing
data},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D592--D596},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw924},
doi = {10.1093/NAR/GKW924},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SkrzypekBBMSS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Solis-MezarinoH17,
author = {Victor Solis{-}Mezarino and
Franz Herzog},
title = {compleXView: a server for the interpretation of protein abundance
and connectivity information to identify protein complexes},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W276--W284},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx411},
doi = {10.1093/NAR/GKX411},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Solis-MezarinoH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/StankKHSNP0W17,
author = {Antonia Stank and
Daria B. Kokh and
Max Horn and
Elena Sizikova and
Rebecca Neil and
Joanna Panecka and
Stefan Richter and
Rebecca C. Wade},
title = {{TRAPP} webserver: predicting protein binding site flexibility and
detecting transient binding pockets},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W325--W330},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx277},
doi = {10.1093/NAR/GKX277},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/StankKHSNP0W17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/StreeterHFCFPC17,
author = {Ian Streeter and
Peter W. Harrison and
Adam Faulconbridge and
The HipSci Consortium and
Paul Flicek and
Helen E. Parkinson and
Laura Clarke},
title = {The human-induced pluripotent stem cell initiative - data resources
for cellular genetics},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D691--D697},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw928},
doi = {10.1093/NAR/GKW928},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/StreeterHFCFPC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SunPXCZJWQ17,
author = {Xiaobo Sun and
William S. Pittard and
Tianlei Xu and
Li Chen and
Michael E. Zwick and
Xiaoqian Jiang and
Fusheng Wang and
Zhaohui S. Qin},
title = {Omicseq: a web-based search engine for exploring omics datasets},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W445--W452},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx258},
doi = {10.1093/NAR/GKX258},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SunPXCZJWQ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SzklarczykMC0WS17,
author = {Damian Szklarczyk and
John H. Morris and
Helen Cook and
Michael Kuhn and
Stefan Wyder and
Milan Simonovic and
Alberto Santos and
Nadezhda T. Doncheva and
Alexander Roth and
Peer Bork and
Lars Juhl Jensen and
Christian von Mering},
title = {The {STRING} database in 2017: quality-controlled protein-protein
association networks, made broadly accessible},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D362--D368},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw937},
doi = {10.1093/NAR/GKW937},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SzklarczykMC0WS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TangLKGLZ17,
author = {Zefang Tang and
Chenwei Li and
Boxi Kang and
Ge Gao and
Cheng Li and
Zemin Zhang},
title = {{GEPIA:} a web server for cancer and normal gene expression profiling
and interactive analyses},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W98--W102},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx247},
doi = {10.1093/NAR/GKX247},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/TangLKGLZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Tassy17,
author = {Olivier Tassy},
title = {New data and features for advanced data mining in Manteia},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D707--D711},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw999},
doi = {10.1093/NAR/GKW999},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Tassy17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TianLYYYDXS17,
author = {Tian Tian and
Yue Liu and
Hengyu Yan and
Qi You and
Xin Yi and
Zhou Du and
Wenying Xu and
Zhen Su},
title = {agriGO v2.0: a {GO} analysis toolkit for the agricultural community,
2017 update},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W122--W129},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx382},
doi = {10.1093/NAR/GKX382},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/TianLYYYDXS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TillichLPUFBG17,
author = {Michael Tillich and
Pascal Lehwark and
Tommaso Pellizzer and
Elena S. Ulbricht{-}Jones and
Axel Fischer and
Ralph Bock and
Stephan Greiner},
title = {GeSeq - versatile and accurate annotation of organelle genomes},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W6--W11},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx391},
doi = {10.1093/NAR/GKX391},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/TillichLPUFBG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ToribioAACCCFGG17,
author = {Ana Luisa Toribio and
Blaise T. F. Alako and
Clara Amid and
Ana Cerde{\~{n}}o{-}T{\'{a}}rraga and
Laura Clarke and
Iain Cleland and
Susan Fairley and
Richard Gibson and
Neil Goodgame and
Petra ten Hoopen and
Suran Jayathilaka and
Simon Kay and
Rasko Leinonen and
Xin Liu and
Josu{\'{e}} Mart{\'{\i}}nez{-}Villacorta and
Nima Pakseresht and
Jeena Rajan and
Kethi Reddy and
Marc Rossello and
Nicole Silvester and
Dimitriy Smirnov and
Daniel Vaughan and
Vadim Zalunin and
Guy Cochrane},
title = {European Nucleotide Archive in 2016},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D32--D36},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1106},
doi = {10.1093/NAR/GKW1106},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ToribioAACCCFGG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TurnerYKHHSDBNE17,
author = {Tychele Turner and
Qian Yi and
Niklas Krumm and
John Huddleston and
Kendra Hoekzema and
Holly A. Stessman and
Anna{-}Lisa Doebley and
Raphael A. Bernier and
Deborah A. Nickerson and
Evan E. Eichler},
title = {denovo-db: a compendium of human de novo variants},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D804--D811},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw865},
doi = {10.1093/NAR/GKW865},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/TurnerYKHHSDBNE17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TynerBCCDEFGGGH17,
author = {Cath Tyner and
Galt P. Barber and
Jonathan Casper and
Hiram Clawson and
Mark Diekhans and
Christopher Eisenhart and
Clayton M. Fischer and
David Gibson and
Jairo Navarro Gonzalez and
Luvina Guruvadoo and
Maximilian Haeussler and
Steven G. Heitner and
Angie S. Hinrichs and
Donna Karolchik and
Brian T. Lee and
Christopher M. Lee and
Parisa Nejad and
Brian J. Raney and
Kate R. Rosenbloom and
Matthew L. Speir and
Chris Villarreal and
John Vivian and
Ann S. Zweig and
David Haussler and
Michael Kuhn and
W. James Kent},
title = {The {UCSC} Genome Browser database: 2017 update},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D626--D634},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1134},
doi = {10.1093/NAR/GKW1134},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/TynerBCCDEFGGGH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/UrbanCRIPPSKBMH17,
author = {Martin Urban and
Alayne Cuzick and
Kim Rutherford and
Alistair G. Irvine and
Helder Pedro and
Rashmi Pant and
Vidyendra Sadanadan and
Lokanath Khamari and
Santoshkumar Billal and
Sagar Mohanty and
Kim E. Hammond{-}Kosack},
title = {PHI-base: a new interface and further additions for the multi-species
pathogen-host interactions database},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D604--D610},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1089},
doi = {10.1093/NAR/GKW1089},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/UrbanCRIPPSKBMH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/UrsuHKBYMNO17,
author = {Oleg Ursu and
Jayme Holmes and
Jeffrey Knockel and
Cristian Bologa and
Jeremy J. Yang and
Stephen L. Mathias and
Stuart J. Nelson and
Tudor I. Oprea},
title = {DrugCentral: online drug compendium},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D932--D939},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw993},
doi = {10.1093/NAR/GKW993},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/UrsuHKBYMNO17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VallenetCCGLJMR17,
author = {David Vallenet and
Alexandra Calteau and
St{\'{e}}phane Cruveiller and
Mathieu Gachet and
Aur{\'{e}}lie Lajus and
Adrien Josso and
Jonathan Mercier and
Alexandre Renaux and
Johan Rollin and
Zo{\'{e}} Rouy and
David Roche and
Claude Scarpelli and
Claudine M{\'{e}}digue},
title = {MicroScope in 2017: an expanding and evolving integrated resource
for community expertise of microbial genomes},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D517--D528},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1101},
doi = {10.1093/NAR/GKW1101},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/VallenetCCGLJMR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VargaDRT17,
author = {Julia Varga and
L{\'{a}}szl{\'{o}} Dobson and
Istv{\'{a}}n Rem{\'{e}}nyi and
G{\'{a}}bor E. Tusn{\'{a}}dy},
title = {{TSTMP:} target selection for structural genomics of human transmembrane
proteins},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D325--D330},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw939},
doi = {10.1093/NAR/GKW939},
timestamp = {Tue, 06 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/VargaDRT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ViennasKMSMMVGP17,
author = {Emmanouil Viennas and
Angeliki Komianou and
Clint Mizzi and
Maja Stojiljkovic and
Christina Mitropoulou and
Juha Muilu and
Mauno Vihinen and
Panagiota Grypioti and
Styliani Papadaki and
Cristiana Pavlidis and
Branka Zukic and
Theodora Katsila and
Peter J. van der Spek and
Sonja Pavlovic and
Giannis Tzimas and
George P. Patrinos},
title = {Expanded national database collection and data coverage in the FINDbase
worldwide database for clinically relevant genomic variation allele
frequencies},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D846--D853},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw949},
doi = {10.1093/NAR/GKW949},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ViennasKMSMMVGP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ViveloWATL17,
author = {Christina A. Vivelo and
Ricky Wat and
Charul Agrawal and
Hui Yi Tee and
Anthony Kar Lun Leung},
title = {ADPriboDB: The database of ADP-ribosylated proteins},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D204--D209},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw706},
doi = {10.1093/NAR/GKW706},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ViveloWATL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VriesRSZT17,
author = {Sjoerd Jacob de Vries and
Julien Rey and
Christina E. M. Schindler and
Martin Zacharias and
Pierre Tuff{\'{e}}ry},
title = {The pepATTRACT web server for blind, large-scale peptide-protein docking},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W361--W364},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx335},
doi = {10.1093/NAR/GKX335},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/VriesRSZT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangBCWGSTHZ17,
author = {Yanli Wang and
Stephen H. Bryant and
Tiejun Cheng and
Jiyao Wang and
Asta Gindulyte and
Benjamin A. Shoemaker and
Paul A. Thiessen and
Siqian He and
Jian Zhang},
title = {PubChem BioAssay: 2017 update},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D955--D963},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1118},
doi = {10.1093/NAR/GKW1118},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WangBCWGSTHZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangCZWTLLKLWZM17,
author = {Jianjian Wang and
Yuze Cao and
Huixue Zhang and
Tianfeng Wang and
Qinghua Tian and
Xiaoyu Lu and
Xiaoyan Lu and
Xiaotong Kong and
Zhaojun Liu and
Ning Wang and
Shuai Zhang and
Heping Ma and
Shangwei Ning and
Lihua Wang},
title = {{NSDNA:} a manually curated database of experimentally supported ncRNAs
associated with nervous system diseases},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D902--D907},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1038},
doi = {10.1093/NAR/GKW1038},
timestamp = {Mon, 12 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WangCZWTLLKLWZM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangSWLZLLPL17,
author = {Xia Wang and
Yihang Shen and
Shiwei Wang and
Shiliang Li and
Weilin Zhang and
Xiaofeng Liu and
Luhua Lai and
Jianfeng Pei and
Honglin Li},
title = {PharmMapper 2017 update: a web server for potential drug target identification
with a comprehensive target pharmacophore database},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W356--W360},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx374},
doi = {10.1093/NAR/GKX374},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WangSWLZLLPL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangVSG017,
author = {Jing Wang and
Suhas V. Vasaikar and
Zhiao Shi and
Michael Greer and
Bing Zhang},
title = {WebGestalt 2017: a more comprehensive, powerful, flexible and interactive
gene set enrichment analysis toolkit},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W130--W137},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx356},
doi = {10.1093/NAR/GKX356},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WangVSG017.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangVXZ17,
author = {Yan Wang and
Jouko Virtanen and
Zhidong Xue and
Yang Zhang},
title = {{I-TASSER-MR:} automated molecular replacement for distant-homology
proteins using iterative fragment assembly and progressive sequence
truncation},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W429--W434},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx349},
doi = {10.1093/NAR/GKX349},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WangVXZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangWLSXZ17,
author = {Yan Wang and
Jian Wang and
Ruiming Li and
Qiang Shi and
Zhidong Xue and
Yang Zhang},
title = {ThreaDomEx: a unified platform for predicting continuous and discontinuous
protein domains by multiple-threading and segment assembly},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W400--W407},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx410},
doi = {10.1093/NAR/GKX410},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WangWLSXZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangXTYGC17,
author = {Yi Wang and
Ling Xu and
Roger Thilmony and
Frank M. You and
Yong Qiang Gu and
Devin Coleman{-}Derr},
title = {{PIECE} 2.0: an update for the plant gene structure comparison and
evolution database},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {1015--1020},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw935},
doi = {10.1093/NAR/GKW935},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WangXTYGC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangYZLHLY17,
author = {Dan Wang and
Liuhui Yang and
Ping Zhang and
Joshua LaBaer and
Henning Hermjakob and
Dong Li and
Xiaobo Yu},
title = {AAgAtlas 1.0: a human autoantigen database},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D769--D776},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw946},
doi = {10.1093/NAR/GKW946},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WangYZLHLY17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WattamDABBBCDDG17,
author = {Alice R. Wattam and
James J. Davis and
Rida Assaf and
S{\'{e}}bastien Boisvert and
Thomas S. Brettin and
Christopher Bun and
Neal Conrad and
Emily M. Dietrich and
Terry Disz and
Joseph L. Gabbard and
Svetlana Gerdes and
Christopher S. Henry and
Ronald W. Kenyon and
Dustin Machi and
Chunhong Mao and
Eric K. Nordberg and
Gary J. Olsen and
Daniel E. Murphy{-}Olson and
Robert Olson and
Ross A. Overbeek and
Bruce D. Parrello and
Gordon D. Pusch and
Maulik Shukla and
Veronika Vonstein and
Andrew S. Warren and
Fangfang Xia and
Hyun Seung Yoo and
Rick L. Stevens},
title = {Improvements to PATRIC, the all-bacterial Bioinformatics Database
and Analysis Resource Center},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D535--D542},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1017},
doi = {10.1093/NAR/GKW1017},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WattamDABBBCDDG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WeiseOMHK17,
author = {Stephan Weise and
Markus Oppermann and
Lorenzo Maggioni and
Theo J. L. van Hintum and
Helmut Kn{\"{u}}pffer},
title = {{EURISCO:} The European search catalogue for plant genetic resources},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D1003--D1008},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw755},
doi = {10.1093/NAR/GKW755},
timestamp = {Mon, 24 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/WeiseOMHK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WhitmoreMMJW17,
author = {Lee Whitmore and
Andrew John Miles and
Lazaros Mavridis and
Robert W. Janes and
B. A. Wallace},
title = {{PCDDB:} new developments at the Protein Circular Dichroism Data Bank},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D303--D307},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw796},
doi = {10.1093/NAR/GKW796},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WhitmoreMMJW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WolstencroftKSS17,
author = {Katherine Wolstencroft and
Olga Krebs and
Jacky L. Snoep and
Natalie J. Stanford and
Finn Bacall and
Martin Golebiewski and
Rostyk Kuzyakiv and
Quyen Nguyen and
Stuart Owen and
Stian Soiland{-}Reyes and
Jakub Straszewski and
David D. van Niekerk and
Alan R. Williams and
Lars Malmstr{\"{o}}m and
Bernd Rinn and
Wolfgang M{\"{u}}ller and
Carole A. Goble},
title = {FAIRDOMHub: a repository and collaboration environment for sharing
systems biology research},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D404--D407},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1032},
doi = {10.1093/NAR/GKW1032},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/WolstencroftKSS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WongLTFKLRGSRS17,
author = {Kira M. Wong and
Kristofor Langlais and
Geoffrey S. Tobias and
Colette Fletcher{-}Hoppe and
Donna Krasnewich and
Hilary S. Leeds and
Laura Lyman Rodriguez and
Georgy Godynskiy and
Valerie A. Schneider and
Erin M. Ramos and
Stephen T. Sherry},
title = {The dbGaP data browser: a new tool for browsing dbGaP controlled-access
genomic data},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D819--D826},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1139},
doi = {10.1093/NAR/GKW1139},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WongLTFKLRGSRS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WorthKTKRKHK17,
author = {Catherine L. Worth and
Franziska Kreuchwig and
Johanna K. S. Tiemann and
Annika Kreuchwig and
Michele Ritschel and
Gunnar Kleinau and
Peter W. Hildebrand and
Gerd Krause},
title = {{GPCR-SSFE} 2.0 - a fragment-based molecular modeling web tool for
Class {A} G-protein coupled receptors},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W408--W415},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx399},
doi = {10.1093/NAR/GKX399},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WorthKTKRKHK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WuB17,
author = {Xuebing Wu and
David P. Bartel},
title = {kpLogo: positional k-mer analysis reveals hidden specificity in biological
sequences},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W534--W538},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx323},
doi = {10.1093/NAR/GKX323},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WuB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WuSDSXMSALORZLF17,
author = {Linhuan Wu and
Qinglan Sun and
Philippe Desmeth and
Hideaki Sugawara and
Zhenghong Xu and
Kevin McCluskey and
David Smith and
Vasilenko Alexander and
Nelson Lima and
Moriya Ohkuma and
Vincent Robert and
Yuguang Zhou and
Jianhui Li and
Guomei Fan and
Supawadee Ingsriswang and
Svetlana Ozerskaya and
Juncai Ma},
title = {World data centre for microorganisms: an information infrastructure
to explore and utilize preserved microbial strains worldwide},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D611--D618},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw903},
doi = {10.1093/NAR/GKW903},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WuSDSXMSALORZLF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/X17,
title = {Database Resources of the National Center for Biotechnology Information},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D12--D17},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1071},
doi = {10.1093/NAR/GKW1071},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/X17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/X17a,
title = {The {BIG} Data Center: from deposition to integration to translation},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D18--D24},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1060},
doi = {10.1093/NAR/GKW1060},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/X17a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/X17b,
title = {Erratum: DisProt 7.0: a major update of the database of disordered
proteins},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D1123--D1124},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1279},
doi = {10.1093/NAR/GKW1279},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/X17b.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/X17c,
title = {Editorial: the 15th annual Nucleic Acids Research Web Server issue
2017},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W1--W5},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx457},
doi = {10.1093/NAR/GKX457},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/X17c.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/XiongWGZLZCZWLZ17,
author = {Yichun Xiong and
Yanjun Wei and
Yue Gu and
Shumei Zhang and
Jie Lyu and
Bin Zhang and
Chuangeng Chen and
Jiang Zhu and
Yihan Wang and
Hongbo Liu and
Yan Zhang},
title = {DiseaseMeth version 2.0: a major expansion and update of the human
disease methylation database},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D888--D895},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1123},
doi = {10.1093/NAR/GKW1123},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/XiongWGZLZCZWLZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/XuZLGDZX17,
author = {Yang Xu and
Shuang Zhang and
Shaofeng Lin and
Yaping Guo and
Wankun Deng and
Ying Zhang and
Yu Xue},
title = {{WERAM:} a database of writers, erasers and readers of histone acetylation
and methylation in eukaryotes},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D264--D270},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1011},
doi = {10.1093/NAR/GKW1011},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/XuZLGDZX17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YanZZLH17,
author = {Yumeng Yan and
Di Zhang and
Pei Zhou and
Botong Li and
Sheng{-}You Huang},
title = {{HDOCK:} a web server for protein-protein and protein-DNA/RNA docking
based on a hybrid strategy},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W365--W373},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx407},
doi = {10.1093/NAR/GKX407},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YanZZLH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YangKHKKSL17,
author = {Sunmo Yang and
Chan Yeong Kim and
Sohyun Hwang and
Eiru Kim and
Hyojin Kim and
Hongseok Shim and
Insuk Lee},
title = {{COEXPEDIA:} exploring biomedical hypotheses via co-expressions associated
with medical subject headings (MeSH)},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D389--D396},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw868},
doi = {10.1093/NAR/GKW868},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YangKHKKSL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YangWWTZZT17,
author = {Zhen Yang and
Liangcai Wu and
Anqiang Wang and
Wei Tang and
Yi Zhao and
Haitao Zhao and
Andrew E. Teschendorff},
title = {dbDEMC 2.0: updated database of differentially expressed miRNAs in
human cancers},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D812--D818},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1079},
doi = {10.1093/NAR/GKW1079},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/YangWWTZZT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YaoRMW17,
author = {Jason Yao and
Vladimir Reinharz and
Fran{\c{c}}ois Major and
J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl},
title = {RNA-MoIP: prediction of {RNA} secondary structure and local 3D motifs
from sequence data},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W440--W444},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx429},
doi = {10.1093/NAR/GKX429},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YaoRMW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YaoRMW17a,
author = {Jason Yao and
Vladimir Reinharz and
Fran{\c{c}}ois Major and
J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl},
title = {RNA-MoIP: prediction of {RNA} secondary structure and local 3D motifs
from sequence data},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W573},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx575},
doi = {10.1093/NAR/GKX575},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YaoRMW17a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YatesBGSTB17,
author = {Bethan Yates and
Bryony Braschi and
Kristian A. Gray and
Ruth L. Seal and
Susan Tweedie and
Elspeth A. Bruford},
title = {Genenames.org: the {HGNC} and {VGNC} resources in 2017},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D619--D625},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1033},
doi = {10.1093/NAR/GKW1033},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YatesBGSTB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YeLCLXX17,
author = {Pohao Ye and
Yizhao Luan and
Kaining Chen and
Yizhi Liu and
Chuanle Xiao and
Zhi Xie},
title = {MethSMRT: an integrative database for {DNA} N6-methyladenine and N4-methylcytosine
generated by single-molecular real-time sequencing},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D85--D89},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw950},
doi = {10.1093/NAR/GKW950},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/YeLCLXX17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YevshinSVKK17,
author = {Ivan S. Yevshin and
Ruslan N. Sharipov and
Tagir F. Valeev and
Alexander E. Kel and
Fedor A. Kolpakov},
title = {{GTRD:} a database of transcription factor binding sites identified
by ChIP-seq experiments},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D61--D67},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw951},
doi = {10.1093/NAR/GKW951},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YevshinSVKK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YiZLZHLLHCTHZHL17,
author = {Ying Yi and
Yue Zhao and
Chunhua Li and
Lin Zhang and
Huiying Huang and
Yana Li and
Lanlan Liu and
Ping Hou and
Tianyu Cui and
Puwen Tan and
Yongfei Hu and
Ting Zhang and
Yan Huang and
Xiaobo Li and
Jia Yu and
Dong Wang},
title = {{RAID} v2.0: an updated resource of RNA-associated interactions across
organisms},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D115--D118},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1052},
doi = {10.1093/NAR/GKW1052},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YiZLZHLLHCTHZHL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YouXZZYYWZZPLS17,
author = {Qi You and
Wenying Xu and
Kang Zhang and
Liwei Zhang and
Xin Yi and
Dongxia Yao and
Chun{-}Chao Wang and
Xueyan Zhang and
Xinhua Zhao and
Nicholas J. Provart and
Fuguang Li and
Zhen Su},
title = {ccNET: Database of co-expression networks with functional modules
for diploid and polyploid Gossypium},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D1090--D1099},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw910},
doi = {10.1093/NAR/GKW910},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YouXZZYYWZZPLS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YuDWZWLZ17,
author = {Jingyin Yu and
Komivi Dossa and
Linhai Wang and
Yanxin Zhang and
Xin Wei and
Boshou Liao and
Xiurong Zhang},
title = {PMDBase: a database for studying microsatellite {DNA} and marker development
in plants},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D1046--D1053},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw906},
doi = {10.1093/NAR/GKW906},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YuDWZWLZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YuanMLIIWC17,
author = {Chunhui Yuan and
Xianwen Meng and
Xue Li and
Nicola Illing and
Robert A. Ingle and
Jingjing Wang and
Ming Chen},
title = {PceRBase: a database of plant competing endogenous {RNA}},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D1009--D1014},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw916},
doi = {10.1093/NAR/GKW916},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YuanMLIIWC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZdobnovTKWSISLK17,
author = {Evgeny M. Zdobnov and
Fredrik Tegenfeldt and
Dmitry Kuznetsov and
Robert M. Waterhouse and
Felipe A. Sim{\~{a}}o and
Panagiotis Ioannidis and
Mathieu Seppey and
Alexis Loetscher and
Evgenia V. Kriventseva},
title = {OrthoDB v9.1: cataloging evolutionary and functional annotations for
animal, fungal, plant, archaeal, bacterial and viral orthologs},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D744--D749},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1119},
doi = {10.1093/NAR/GKW1119},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ZdobnovTKWSISLK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhangAABDGHKLLL17,
author = {Yun Zhang and
Brian D. Aevermann and
Tavis K. Anderson and
David F. Burke and
Gwenaelle Dauphin and
Zhiping Gu and
Sherry He and
Sanjeev Kumar and
Christopher N. Larsen and
Alexandra J. Lee and
Xiaomei Li and
Catherine Macken and
Colin Mahaffey and
Brett E. Pickett and
Brian Reardon and
Thomas Smith and
Lucy Stewart and
Christian Suloway and
Guangyu Sun and
Lei Tong and
Amy L. Vincent and
Bryan Walters and
Sam Zaremba and
Hongtao Zhao and
Liwei Zhou and
Christian M. Zmasek and
Edward B. Klem and
Richard H. Scheuermann},
title = {Influenza Research Database: An integrated bioinformatics resource
for influenza virus research},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D466--D474},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw857},
doi = {10.1093/NAR/GKW857},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ZhangAABDGHKLLL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhangFZ17,
author = {Chengxin Zhang and
Peter L. Freddolino and
Yang Zhang},
title = {{COFACTOR:} improved protein function prediction by combining structure,
sequence and protein-protein interaction information},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W291--W299},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx366},
doi = {10.1093/NAR/GKX366},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZhangFZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhangTWJLZYHZHL17,
author = {Ting Zhang and
Puwen Tan and
Liqiang Wang and
Nana Jin and
Yana Li and
Lin Zhang and
Huan Yang and
Zhenyu Hu and
Lining Zhang and
Chunyu Hu and
Chunhua Li and
Kun Qian and
Changjian Zhang and
Yan Huang and
Kongning Li and
Hao Lin and
Dong Wang},
title = {RNALocate: a resource for {RNA} subcellular localizations},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D135--D138},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw728},
doi = {10.1093/NAR/GKW728},
timestamp = {Thu, 23 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ZhangTWJLZYHZHL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhouLSZZYQ17,
author = {Keren Zhou and
Shun Liu and
Wen{-}Ju Sun and
Ling{-}Ling Zheng and
Hui Zhou and
Jian{-}Hua Yang and
Liang{-}Hu Qu},
title = {ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding
RNAs and protein-coding genes from ChIP-seq data},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D43--D50},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw965},
doi = {10.1093/NAR/GKW965},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZhouLSZZYQ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhuYCWZZ17,
author = {Guanghui Zhu and
Hui Yang and
Xiao Chen and
Jun Wu and
Yong Zhang and
Xing{-}Ming Zhao},
title = {{CSTEA:} a webserver for the Cell State Transition Expression Atlas},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W103--W108},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx402},
doi = {10.1093/NAR/GKX402},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZhuYCWZZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZierepPYTKG17,
author = {Paul F. Zierep and
Nat{\`{a}}lia Padilla and
Dimitar G. Yonchev and
Kiran K. Telukunta and
Dennis Klementz and
Stefan G{\"{u}}nther},
title = {SeMPI: a genome-based secondary metabolite prediction and identification
web server},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Webserver-Issue},
pages = {W64--W71},
year = {2017},
url = {https://doi.org/10.1093/nar/gkx289},
doi = {10.1093/NAR/GKX289},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZierepPYTKG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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