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@article{DBLP:journals/jcb/AungT05,
author = {Zeyar Aung and
Kian{-}Lee Tan},
title = {Automatic 3D Protein Structure Classification without Structural Alignment},
journal = {J. Comput. Biol.},
volume = {12},
number = {9},
pages = {1221--1241},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1221},
doi = {10.1089/CMB.2005.12.1221},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/AungT05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Bailey-KelloggCP05,
author = {Chris Bailey{-}Kellogg and
Sheetal Chainraj and
Gopal Pandurangan},
title = {A Random Graph Approach to {NMR} Sequential Assignment},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {569--583},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.569},
doi = {10.1089/CMB.2005.12.569},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/Bailey-KelloggCP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BattleSK05,
author = {Alexis J. Battle and
Eran Segal and
Daphne Koller},
title = {Probabilistic Discovery of Overlapping Cellular Processes and Their
Regulation},
journal = {J. Comput. Biol.},
volume = {12},
number = {7},
pages = {909--927},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.909},
doi = {10.1089/CMB.2005.12.909},
timestamp = {Thu, 01 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/BattleSK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BeerenwinkelRDHKSL05,
author = {Niko Beerenwinkel and
J{\"{o}}rg Rahnenf{\"{u}}hrer and
Martin D{\"{a}}umer and
Daniel Hoffmann and
Rolf Kaiser and
Joachim Selbig and
Thomas Lengauer},
title = {Learning Multiple Evolutionary Pathways from Cross-Sectional Data},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {584--598},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.584},
doi = {10.1089/CMB.2005.12.584},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BeerenwinkelRDHKSL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BerrarSBDD05,
author = {Daniel P. Berrar and
Brian Sturgeon and
Ian Bradbury and
C. Stephen Downes and
Werner Dubitzky},
title = {Survival Trees for Analyzing Clinical Outcome in Lung Adenocarcinomas
Based on Gene Expression Profiles: Identification of Neogenin and
Diacylglycerol Kinase Expression as Critical Factors},
journal = {J. Comput. Biol.},
volume = {12},
number = {5},
pages = {534--544},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.534},
doi = {10.1089/CMB.2005.12.534},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/BerrarSBDD05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BlekasFL05,
author = {Konstantinos Blekas and
Dimitrios I. Fotiadis and
Aristidis Likas},
title = {Motif-Based Protein Sequence Classification Using Neural Networks},
journal = {J. Comput. Biol.},
volume = {12},
number = {1},
pages = {64--82},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.64},
doi = {10.1089/CMB.2005.12.64},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/BlekasFL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ChatterjiP05,
author = {Sourav Chatterji and
Lior Pachter},
title = {Large Multiple Organism Gene Finding by Collapsed Gibbs Sampling},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {599--608},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.599},
doi = {10.1089/CMB.2005.12.599},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/ChatterjiP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ChenLRWXXJ05,
author = {Zhi{-}Zhong Chen and
Guohui Lin and
Romeo Rizzi and
Jianjun Wen and
Dong Xu and
Ying Xu and
Tao Jiang},
title = {More Reliable Protein {NMR} Peak Assignment via Improved 2-Interval
Scheduling},
journal = {J. Comput. Biol.},
volume = {12},
number = {2},
pages = {129--146},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.129},
doi = {10.1089/CMB.2005.12.129},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/ChenLRWXXJ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ChristensenHJ05,
author = {Ole F. Christensen and
Asger Hobolth and
Jens Ledet Jensen},
title = {Pseudo-Likelihood Analysis of Codon Substitution Models with Neighbor-Dependent
Rates},
journal = {J. Comput. Biol.},
volume = {12},
number = {9},
pages = {1166--1182},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1166},
doi = {10.1089/CMB.2005.12.1166},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/ChristensenHJ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Clote05,
author = {Peter Clote},
title = {An Efficient Algorithm to Compute the Landscape of Locally Optimal
{RNA} Secondary Structures with Respect to the NussinovJacobson Energy
Model},
journal = {J. Comput. Biol.},
volume = {12},
number = {1},
pages = {83--101},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.83},
doi = {10.1089/CMB.2005.12.83},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Clote05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/DYachkovHMVW05,
author = {Arkadii G. D'yachkov and
Frank K. Hwang and
Anthony J. Macula and
Pavel A. Vilenkin and
Chih{-}Wen Weng},
title = {A Construction of Pooling Designs with Some Happy Surprises},
journal = {J. Comput. Biol.},
volume = {12},
number = {8},
pages = {1129--1136},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1129},
doi = {10.1089/CMB.2005.12.1129},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/DYachkovHMVW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/DehnertPHH05,
author = {Manuel Dehnert and
Rainer Plaumann and
Werner E. Helm and
Marc{-}Thorsten H{\"{u}}tt},
title = {Genome Phylogeny Based on Short-Range Correlations in {DNA} Sequences},
journal = {J. Comput. Biol.},
volume = {12},
number = {5},
pages = {545--553},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.545},
doi = {10.1089/CMB.2005.12.545},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/DehnertPHH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/DewWS05,
author = {Ian M. Dew and
Brian Walenz and
Granger G. Sutton},
title = {A Tool for Analyzing Mate Pairs in Assemblies {(TAMPA)}},
journal = {J. Comput. Biol.},
volume = {12},
number = {5},
pages = {497--513},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.497},
doi = {10.1089/CMB.2005.12.497},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/DewWS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/DunlavyOKT05,
author = {Daniel M. Dunlavy and
Dianne P. O'Leary and
Dmitri Klimov and
D. Thirumalai},
title = {{HOPE:} {A} Homotopy Optimization Method for Protein Structure Prediction},
journal = {J. Comput. Biol.},
volume = {12},
number = {10},
pages = {1275--1288},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1275},
doi = {10.1089/CMB.2005.12.1275},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/DunlavyOKT05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Erdmann05,
author = {Michael A. Erdmann},
title = {Protein Similarity from Knot Theory: Geometric Convolution and Line
Weavings},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {609--637},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.609},
doi = {10.1089/CMB.2005.12.609},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Erdmann05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/GuptaMS05,
author = {Arvind Gupta and
J{\'{a}}n Manuch and
Ladislav Stacho},
title = {Structure-Approximating Inverse Protein Folding Problem in the 2D
{HP} Model},
journal = {J. Comput. Biol.},
volume = {12},
number = {10},
pages = {1328--1345},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1328},
doi = {10.1089/CMB.2005.12.1328},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/GuptaMS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Gusfield05,
author = {Dan Gusfield},
title = {Preface: Special {RECOMB} 2004 Issue},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {567--568},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.567},
doi = {10.1089/CMB.2005.12.567},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/Gusfield05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HeG05,
author = {Xin He and
Michael H. Goldwasser},
title = {Identifying Conserved Gene Clusters in the Presence of Homology Families},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {638--656},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.638},
doi = {10.1089/CMB.2005.12.638},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HeG05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HertzbergZGD05,
author = {Libi Hertzberg and
Or Zuk and
Gad Getz and
Eytan Domany},
title = {Finding Motifs in Promoter Regions},
journal = {J. Comput. Biol.},
volume = {12},
number = {3},
pages = {314--330},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.314},
doi = {10.1089/CMB.2005.12.314},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HertzbergZGD05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HobermanSD05,
author = {Rose Hoberman and
David Sankoff and
Dannie Durand},
title = {The Statistical Analysis of Spatially Clustered Genes under the Maximum
Gap Criterion},
journal = {J. Comput. Biol.},
volume = {12},
number = {8},
pages = {1083--1102},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1083},
doi = {10.1089/CMB.2005.12.1083},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HobermanSD05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HobolthJ05,
author = {Asger Hobolth and
Jens Ledet Jensen},
title = {Applications of Hidden Markov Models for Characterization of Homologous
{DNA} Sequences with a Common Gene},
journal = {J. Comput. Biol.},
volume = {12},
number = {2},
pages = {186--203},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.186},
doi = {10.1089/CMB.2005.12.186},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/HobolthJ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HuanBWSPT05,
author = {Jun Huan and
Deepak Bandyopadhyay and
Wei Wang and
Jack Snoeyink and
Jan F. Prins and
Alexander Tropsha},
title = {Comparing Graph Representations of Protein Structure for Mining Family-Specific
Residue-Based Packing Motifs},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {657--671},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.657},
doi = {10.1089/CMB.2005.12.657},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/HuanBWSPT05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HuangCC05,
author = {Yao{-}Ting Huang and
Kun{-}Mao Chao and
Ting Chen},
title = {An Approximation Algorithm for Haplotype Inference by Maximum Parsimony},
journal = {J. Comput. Biol.},
volume = {12},
number = {10},
pages = {1261--1274},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1261},
doi = {10.1089/CMB.2005.12.1261},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/HuangCC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/JiaD05,
author = {Yuting Jia and
T. Gregory Dewey},
title = {A Random Polymer Model of the Statistical Significance of Structure
Alignment},
journal = {J. Comput. Biol.},
volume = {12},
number = {3},
pages = {298--313},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.},
doi = {10.1089/CMB.2005.12.},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/JiaD05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KaufmanBZSD05,
author = {Menachem Kaufman and
David Blokh and
Naomi Zurgil and
Yana Shafran and
Mordechai Deutsch},
title = {A Cluster Pattern Algorithm for the Analysis of Multiparametric Cell
Assays},
journal = {J. Comput. Biol.},
volume = {12},
number = {7},
pages = {1014--1028},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1014},
doi = {10.1089/CMB.2005.12.1014},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/KaufmanBZSD05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Keich05,
author = {Uri Keich},
title = {sFFT: {A} Faster Accurate Computation of the p-Value of the Entropy
Score},
journal = {J. Comput. Biol.},
volume = {12},
number = {4},
pages = {416--430},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.416},
doi = {10.1089/CMB.2005.12.416},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Keich05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KimmelS05,
author = {Gad Kimmel and
Ron Shamir},
title = {A Block-Free Hidden Markov Model for Genotypes and Its Application
to Disease Association},
journal = {J. Comput. Biol.},
volume = {12},
number = {10},
pages = {1243--1260},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1243},
doi = {10.1089/CMB.2005.12.1243},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/KimmelS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LandauPW05,
author = {Gad M. Landau and
Laxmi Parida and
Oren Weimann},
title = {Gene Proximity Analysis across Whole Genomes via {PQ} Trees\({}^{\mbox{1}}\)},
journal = {J. Comput. Biol.},
volume = {12},
number = {10},
pages = {1289--1306},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1289},
doi = {10.1089/CMB.2005.12.1289},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LandauPW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LeungCXC05,
author = {Ming{-}Ying Leung and
Kwok Pui Choi and
Aihua Xia and
Louis H. Y. Chen},
title = {Nonrandom Clusters of Palindromes in Herpesvirus Genomes},
journal = {J. Comput. Biol.},
volume = {12},
number = {3},
pages = {331--354},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.331},
doi = {10.1089/CMB.2005.12.331},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LeungCXC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LeungCYRT05,
author = {Henry C. M. Leung and
Francis Y. L. Chin and
Siu{-}Ming Yiu and
Ronald Rosenfeld and
Wai Wan Tsang},
title = {Finding Motifs with Insufficient Number of Strong Binding Sites},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {686--701},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.686},
doi = {10.1089/CMB.2005.12.686},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/LeungCYRT05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LiJ05,
author = {Haifeng Li and
Tao Jiang},
title = {A Class of Edit Kernels for SVMs to Predict Translation Initiation
Sites in Eukaryotic mRNAs},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {702--718},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.702},
doi = {10.1089/CMB.2005.12.702},
timestamp = {Tue, 15 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LiJ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LiJ05a,
author = {Jing Li and
Tao Jiang},
title = {Computing the Minimum Recombinant Haplotype Configuration from Incomplete
Genotype Data on a Pedigree by Integer Linear Programming},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {719--739},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.719},
doi = {10.1089/CMB.2005.12.719},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/LiJ05a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LiL05,
author = {Lei M. Li and
Henry Horng{-}Shing Lu},
title = {Explore Biological Pathways from Noisy Array Data by Directed Acyclic
Boolean Networks},
journal = {J. Comput. Biol.},
volume = {12},
number = {2},
pages = {170--185},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.170},
doi = {10.1089/CMB.2005.12.170},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LiL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LiSYHN05,
author = {Lang Li and
Huidong Shi and
Constantin T. Yiannoutsos and
Tim Hui{-}Ming Huang and
Kenneth P. Nephew},
title = {Epigenetic Hypothesis Tests for Methylation and Acetylation in a Triple
Microarray System},
journal = {J. Comput. Biol.},
volume = {12},
number = {3},
pages = {370--390},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.370},
doi = {10.1089/CMB.2005.12.370},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/LiSYHN05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Liebermeister05,
author = {Wolfram Liebermeister},
title = {Predicting Physiological Concentrations of Metabolites from Their
Molecular Structure},
journal = {J. Comput. Biol.},
volume = {12},
number = {10},
pages = {1307--1315},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1307},
doi = {10.1089/CMB.2005.12.1307},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Liebermeister05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LilienSAD05,
author = {Ryan H. Lilien and
Brian W. Stevens and
Amy C. Anderson and
Bruce Randall Donald},
title = {A Novel Ensemble-Based Scoring and Search Algorithm for Protein Redesign
and Its Application to Modify the Substrate Specificity of the Gramicidin
Synthetase {A} Phenylalanine Adenylation Enzyme},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {740--761},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.740},
doi = {10.1089/CMB.2005.12.740},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LilienSAD05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LinLCT05,
author = {Ying Chih Lin and
Chin Lung Lu and
Hwan{-}You Chang and
Chuan Yi Tang},
title = {An Efficient Algorithm for Sorting by Block-Interchanges and Its Application
to the Evolution of Vibrio Species},
journal = {J. Comput. Biol.},
volume = {12},
number = {1},
pages = {102--112},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.102},
doi = {10.1089/CMB.2005.12.102},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/LinLCT05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LinhartS05,
author = {Chaim Linhart and
Ron Shamir},
title = {The Degenerate Primer Design Problem: Theory and Applications},
journal = {J. Comput. Biol.},
volume = {12},
number = {4},
pages = {431--456},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.431},
doi = {10.1089/CMB.2005.12.431},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LinhartS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Lippert05,
author = {Ross Lippert},
title = {Space-Efficient Whole Genome Comparisons with BurrowsWheeler Transforms},
journal = {J. Comput. Biol.},
volume = {12},
number = {4},
pages = {407--415},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.407},
doi = {10.1089/CMB.2005.12.407},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Lippert05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LippertMW05,
author = {Ross A. Lippert and
Clark M. Mobarry and
Brian Walenz},
title = {A Space-Efficient Construction of the Burrows-Wheeler Transform for
Genomic Data},
journal = {J. Comput. Biol.},
volume = {12},
number = {7},
pages = {943--951},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.943},
doi = {10.1089/CMB.2005.12.943},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LippertMW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LippertZFMI05,
author = {Ross A. Lippert and
Xiaoyue Zhao and
Liliana Florea and
Clark M. Mobarry and
Sorin Istrail},
title = {Finding Anchors for Genomic Sequence Comparison},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {762--776},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.762},
doi = {10.1089/CMB.2005.12.762},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LippertZFMI05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LiuL05,
author = {Jian Liu and
Ming Li},
title = {Finding Cancer Biomarkers from Mass Spectrometry Data by Decision
Lists},
journal = {J. Comput. Biol.},
volume = {12},
number = {7},
pages = {971--979},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.971},
doi = {10.1089/CMB.2005.12.971},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LiuL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MenkeKBC05,
author = {Matthew Menke and
Jonathan King and
Bonnie Berger and
Lenore Cowen},
title = {Wrap-and-Pack: {A} New Paradigm for Beta Structural Motif Recognition
with Application to Recognizing Beta Trefoils},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {777--795},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.777},
doi = {10.1089/CMB.2005.12.777},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/MenkeKBC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MorgantePVZ05,
author = {Michele Morgante and
Alberto Policriti and
Nicola Vitacolonna and
Andrea Zuccolo},
title = {Structured Motifs Search},
journal = {J. Comput. Biol.},
volume = {12},
number = {8},
pages = {1065--1082},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1065},
doi = {10.1089/CMB.2005.12.1065},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/MorgantePVZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/NakhlehWLJ05,
author = {Luay Nakhleh and
Tandy J. Warnow and
C. Randal Linder and
Katherine St. John},
title = {Reconstructing Reticulate Evolution in SpeciesTheory and Practice},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {796--811},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.796},
doi = {10.1089/CMB.2005.12.796},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/NakhlehWLJ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/NedelecMGBDDT05,
author = {Elodie N{\'{e}}d{\'{e}}lec and
Thomas Moncion and
Elisabeth Gassiat and
Bruno Bossard and
Guillemette Duchateau{-}Nguyen and
Alain Denise and
Michel Termier},
title = {A Pairwise Alignment Algorithm Which Favors Clusters of Blocks},
journal = {J. Comput. Biol.},
volume = {12},
number = {1},
pages = {33--47},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.33},
doi = {10.1089/CMB.2005.12.33},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/NedelecMGBDDT05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/NovW05,
author = {Yuval Nov and
Lawrence M. Wein},
title = {Modeling and Analysis of Protein Design under Resource Constraints},
journal = {J. Comput. Biol.},
volume = {12},
number = {2},
pages = {247--282},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.247},
doi = {10.1089/CMB.2005.12.247},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/NovW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/PoundsC05,
author = {Stan Pounds and
Cheng Cheng},
title = {Statistical Development and Evaluation of Microarray Gene Expression
Data Filters},
journal = {J. Comput. Biol.},
volume = {12},
number = {4},
pages = {482--495},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.482},
doi = {10.1089/CMB.2005.12.482},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/PoundsC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/PradinesFRD05,
author = {Jo{\"{e}}l R. Pradines and
Victor Farutin and
Steve Rowley and
Vlado Danc{\'{\i}}k},
title = {Analyzing Protein Lists with Large Networks: Edge-Count Probabilities
in Random Graphs with Given Expected Degrees},
journal = {J. Comput. Biol.},
volume = {12},
number = {2},
pages = {113--128},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.113},
doi = {10.1089/CMB.2005.12.113},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/PradinesFRD05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/PreparataZC05,
author = {Franco P. Preparata and
Louxin Zhang and
Kwok Pui Choi},
title = {Quick, Practical Selection of Effective Seeds for Homology Search},
journal = {J. Comput. Biol.},
volume = {12},
number = {9},
pages = {1137--1152},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1137},
doi = {10.1089/CMB.2005.12.1137},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/PreparataZC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/RajasekaranBH05,
author = {Sanguthevar Rajasekaran and
Sudha Balla and
Chun{-}Hsi Huang},
title = {Exact Algorithms for Planted Motif Problems},
journal = {J. Comput. Biol.},
volume = {12},
number = {8},
pages = {1117--1128},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1117},
doi = {10.1089/CMB.2005.12.1117},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/RajasekaranBH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/RodinMCSB05,
author = {Andrei S. Rodin and
Thomas H. Mosley Jr. and
Andrew G. Clark and
Charles F. Sing and
Eric Boerwinkle},
title = {Mining Genetic Epidemiology Data with Bayesian Networks Application
to {APOE} Gene Variation and Plasma Lipid Levels},
journal = {J. Comput. Biol.},
volume = {12},
number = {1},
pages = {1--11},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1},
doi = {10.1089/CMB.2005.12.1},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/RodinMCSB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Rosenberg05,
author = {Noah A. Rosenberg},
title = {Algorithms for Selecting Informative Marker Panels for Population
Assignment},
journal = {J. Comput. Biol.},
volume = {12},
number = {9},
pages = {1183--1201},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1183},
doi = {10.1089/CMB.2005.12.1183},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Rosenberg05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SankoffT05,
author = {David Sankoff and
Phil Trinh},
title = {Chromosomal Breakpoint Reuse in Genome Sequence Rearrangement},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {812--821},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.812},
doi = {10.1089/CMB.2005.12.812},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SankoffT05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SchuemieKM05,
author = {Martijn J. Schuemie and
Jan A. Kors and
Barend Mons},
title = {Word Sense Disambiguation in the Biomedical Domain: An Overview},
journal = {J. Comput. Biol.},
volume = {12},
number = {5},
pages = {554--565},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.554},
doi = {10.1089/CMB.2005.12.554},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SchuemieKM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SegalS05,
author = {Eran Segal and
Roded Sharan},
title = {A Discriminative Model for Identifying Spatial cis-Regulatory Modules},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {822--834},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.822},
doi = {10.1089/CMB.2005.12.822},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SegalS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SharanGYB05,
author = {Roded Sharan and
Jens Gramm and
Zohar Yakhini and
Amir Ben{-}Dor},
title = {Multiplexing Schemes for Generic {SNP} Genotyping Assays},
journal = {J. Comput. Biol.},
volume = {12},
number = {5},
pages = {514--533},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.514},
doi = {10.1089/CMB.2005.12.514},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/SharanGYB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SharanIKSK05,
author = {Roded Sharan and
Trey Ideker and
Brian P. Kelley and
Ron Shamir and
Richard M. Karp},
title = {Identification of Protein Complexes by Comparative Analysis of Yeast
and Bacterial Protein Interaction Data},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {835--846},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.835},
doi = {10.1089/CMB.2005.12.835},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/SharanIKSK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SharonBCEY05,
author = {Itai Sharon and
Aaron Birkland and
Kuan Y. Chang and
Ran El{-}Yaniv and
Golan Yona},
title = {Correcting {BLAST} e-Values for Low-Complexity Segments},
journal = {J. Comput. Biol.},
volume = {12},
number = {7},
pages = {980--1003},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.980},
doi = {10.1089/CMB.2005.12.980},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SharonBCEY05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SongH05,
author = {Yun S. Song and
Jotun Hein},
title = {Constructing Minimal Ancestral Recombination Graphs},
journal = {J. Comput. Biol.},
volume = {12},
number = {2},
pages = {147--169},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.147},
doi = {10.1089/CMB.2005.12.147},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SongH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SturmfelsS05,
author = {Bernd Sturmfels and
Seth Sullivant},
title = {Toric Ideals of Phylogenetic Invariants},
journal = {J. Comput. Biol.},
volume = {12},
number = {2},
pages = {204--228},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.204},
doi = {10.1089/CMB.2005.12.204},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/SturmfelsS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SturmfelsS05a,
author = {Bernd Sturmfels and
Seth Sullivant},
title = {Toric Ideals of Phylogenetic Invariants},
journal = {J. Comput. Biol.},
volume = {12},
number = {4},
pages = {457--481},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.457},
doi = {10.1089/CMB.2005.12.457},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SturmfelsS05a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SunB05,
author = {Yanni Sun and
Jeremy Buhler},
title = {Designing Multiple Simultaneous Seeds for {DNA} Similarity Search},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {847--861},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.847},
doi = {10.1089/CMB.2005.12.847},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/SunB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/TangKTSA05,
author = {Xinyu Tang and
Bonnie Kirkpatrick and
Shawna L. Thomas and
Guang Song and
Nancy M. Amato},
title = {Using Motion Planning to Study {RNA} Folding Kinetics},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {862--881},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.862},
doi = {10.1089/CMB.2005.12.862},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/TangKTSA05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/TichyW05,
author = {Robert F. Tichy and
Stephan G. Wagner},
title = {Extremal Problems for Topological Indices in Combinatorial Chemistry},
journal = {J. Comput. Biol.},
volume = {12},
number = {7},
pages = {1004--1013},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1004},
doi = {10.1089/CMB.2005.12.1004},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/TichyW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Tosatto05,
author = {Silvio C. E. Tosatto},
title = {The Victor/FRST Function for Model Quality Estimation},
journal = {J. Comput. Biol.},
volume = {12},
number = {10},
pages = {1316--1327},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1316},
doi = {10.1089/CMB.2005.12.1316},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Tosatto05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/WagnerAPM05,
author = {Michael Wagner and
Rafal Adamczak and
Aleksey A. Porollo and
Jaroslaw Meller},
title = {Linear Regression Models for Solvent Accessibility Prediction in Proteins},
journal = {J. Comput. Biol.},
volume = {12},
number = {3},
pages = {355--369},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.355},
doi = {10.1089/CMB.2005.12.355},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/WagnerAPM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Wendl05,
author = {Michael C. Wendl},
title = {Probabilistic Assessment of Clone Overlaps in {DNA} Fingerprint Mapping
via a Priori Models},
journal = {J. Comput. Biol.},
volume = {12},
number = {3},
pages = {283--297},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.283},
doi = {10.1089/CMB.2005.12.283},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Wendl05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/WexlerYKG05,
author = {Ydo Wexler and
Zohar Yakhini and
Yechezkel Kashi and
Dan Geiger},
title = {Finding Approximate Tandem Repeats in Genomic Sequences},
journal = {J. Comput. Biol.},
volume = {12},
number = {7},
pages = {928--942},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.928},
doi = {10.1089/CMB.2005.12.928},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/WexlerYKG05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/WuI05,
author = {Zhijin Wu and
Rafael A. Irizarry},
title = {Stochastic Models Inspired by Hybridization Theory for Short Oligonucleotide
Arrays},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {882--893},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.882},
doi = {10.1089/CMB.2005.12.882},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/WuI05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/XieK05,
author = {Jun Xie and
Nak{-}Kyeong Kim},
title = {Bayesian Models and Markov Chain Monte Carlo Methods for Protein Motifs
with the Secondary Characteristics},
journal = {J. Comput. Biol.},
volume = {12},
number = {7},
pages = {952--970},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.952},
doi = {10.1089/CMB.2005.12.952},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/XieK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/XingL05,
author = {Biao Xing and
Mark J. van der Laan},
title = {A Statistical Method for Constructing Transcriptional Regulatory Networks
Using Gene Expression and Sequence Data},
journal = {J. Comput. Biol.},
volume = {12},
number = {2},
pages = {229--246},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.229},
doi = {10.1089/CMB.2005.12.229},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/XingL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/YangGP05,
author = {Albert C.{-}C. Yang and
Ary L. Goldberger and
Chung{-}Kang Peng},
title = {Genomic Classification Using an Information-Based Similarity Index:
Application to the {SARS} Coronavirus},
journal = {J. Comput. Biol.},
volume = {12},
number = {8},
pages = {1103--1116},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1103},
doi = {10.1089/CMB.2005.12.1103},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/YangGP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/YangHC05,
author = {Chu{-}Wen Yang and
Chin{-}Fu Hsiao and
Chen{-}Kung Chou},
title = {Evaluation of Experimental Designs for Two-Color cDNA Microarrays},
journal = {J. Comput. Biol.},
volume = {12},
number = {9},
pages = {1202--1220},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1202},
doi = {10.1089/CMB.2005.12.1202},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/YangHC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/YinY05,
author = {Changchuan Yin and
Stephen S.{-}T. Yau},
title = {A Fourier Characteristic of Coding Sequences: Origins and a Non-Fourier
Approximation},
journal = {J. Comput. Biol.},
volume = {12},
number = {9},
pages = {1153--1165},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1153},
doi = {10.1089/CMB.2005.12.1153},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/YinY05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/YonaK05,
author = {Golan Yona and
Klara Kedem},
title = {The {URMS-RMS} Hybrid Algorithm for Fast and Sensitive Local Protein
Structure Alignment},
journal = {J. Comput. Biol.},
volume = {12},
number = {1},
pages = {12--32},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.12},
doi = {10.1089/CMB.2005.12.12},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/YonaK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ZhangWSF05,
author = {Dabao Zhang and
Martin T. Wells and
Christine D. Smart and
William E. Fry},
title = {Bayesian Normalization and Identification for Differential Gene Expression
Data},
journal = {J. Comput. Biol.},
volume = {12},
number = {4},
pages = {391--406},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.391},
doi = {10.1089/CMB.2005.12.391},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ZhangWSF05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ZhaoF05,
author = {Sheng Zhao and
Russell D. Fernald},
title = {Comprehensive Algorithm for Quantitative Real-Time Polymerase Chain
Reaction},
journal = {J. Comput. Biol.},
volume = {12},
number = {8},
pages = {1047--1064},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1047},
doi = {10.1089/CMB.2005.12.1047},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ZhaoF05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ZhaoHS05,
author = {Xiaoyue Zhao and
Haiyan Huang and
Terence P. Speed},
title = {Finding Short {DNA} Motifs Using Permuted Markov Models},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {894--906},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.894},
doi = {10.1089/CMB.2005.12.894},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ZhaoHS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ZhuHQS05,
author = {Dongxiao Zhu and
Alfred O. Hero III and
Zhaohui S. Qin and
Anand Swaroop},
title = {High Throughput Screening of Co-Expressed Gene Pairs with Controlled
False Discovery Rate {(FDR)} and Minimum Acceptable Strength {(MAS)}},
journal = {J. Comput. Biol.},
volume = {12},
number = {7},
pages = {1029--1045},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1029},
doi = {10.1089/CMB.2005.12.1029},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ZhuHQS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ZwolakTW05,
author = {Jason W. Zwolak and
John J. Tyson and
Layne T. Watson},
title = {Parameter Estimation for a Mathematical Model of the Cell Cycle in
Frog Eggs},
journal = {J. Comput. Biol.},
volume = {12},
number = {1},
pages = {48--63},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.48},
doi = {10.1089/CMB.2005.12.48},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ZwolakTW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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