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@article{DBLP:journals/bmcsb/Alam-NazkiK12,
author = {Aiman Alam{-}Nazki and
Jawahar Krishnan},
title = {An investigation of spatial signal transduction in cellular networks},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {83},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-83},
doi = {10.1186/1752-0509-6-83},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Alam-NazkiK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AlshalalfaBGMA12,
author = {Mohammed Alshalalfa and
Gary D. Bader and
Anna Goldenberg and
Quaid Morris and
Reda Alhajj},
title = {Detecting microRNAs of high influence on protein functional interaction
networks: a prostate cancer case study},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {112},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-112},
doi = {10.1186/1752-0509-6-112},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AlshalalfaBGMA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AslamS12,
author = {Naveed Aslam and
Harel Z. Shouval},
title = {Regulation of cytoplasmic polyadenylation can generate a bistable
switch},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {12},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-12},
doi = {10.1186/1752-0509-6-12},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AslamS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AuleyWJK12,
author = {Mark Mc Auley and
Darren J. Wilkinson and
Janette Jones and
Thomas B. L. Kirkwood},
title = {A whole-body mathematical model of cholesterol metabolism and its
age-associated dysregulation},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {130},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-130},
doi = {10.1186/1752-0509-6-130},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AuleyWJK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BazzaniHH12,
author = {Susanna Bazzani and
Andreas Hoppe and
Hermann{-}Georg Holzh{\"{u}}tter},
title = {Network-based assessment of the selectivity of metabolic drug targets
in Plasmodium falciparum with respect to human liver metabolism},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {118},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-118},
doi = {10.1186/1752-0509-6-118},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BazzaniHH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Beguerisse-DiazHLBD12,
author = {Mariano Beguerisse{-}D{\'{\i}}az and
Mercedes C. Hern{\'{a}}ndez{-}G{\'{o}}mez and
Alessandro M. Lizzul and
Mauricio Barahona and
Radhika Desikan},
title = {Compound stress response in stomatal closure: a mathematical model
of {ABA} and ethylene interaction in guard cells},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {146},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-146},
doi = {10.1186/1752-0509-6-146},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Beguerisse-DiazHLBD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BeisserGKFSHDKDM12,
author = {Daniela Beisser and
Markus A. Grohme and
Joachim Kopka and
Marcus Frohme and
Ralph O. Schill and
Steffen Hengherr and
Thomas Dandekar and
Gunnar W. Klau and
Marcus T. Dittrich and
Tobias M{\"{u}}ller},
title = {Integrated pathway modules using time-course metabolic profiles and
{EST} data from Milnesium tardigradum},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {72},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-72},
doi = {10.1186/1752-0509-6-72},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/BeisserGKFSHDKDM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Ben-HamoE12,
author = {Rotem Ben{-}Hamo and
Sol Efroni},
title = {Biomarker robustness reveals the {PDGF} network as driving disease
outcome in ovarian cancer patients in multiple studies},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {3},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-3},
doi = {10.1186/1752-0509-6-3},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Ben-HamoE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BiliourisBSK12,
author = {Konstantinos Biliouris and
David Babson and
Claudia Schmidt{-}Dannert and
Yiannis N. Kaznessis},
title = {Stochastic simulations of a synthetic bacteria-yeast ecosystem},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {58},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-58},
doi = {10.1186/1752-0509-6-58},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BiliourisBSK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BirtwistleRKADHKOK12,
author = {Marc R. Birtwistle and
Jens Rauch and
Anatoly Kiyatkin and
Edita Aksamitiene and
Maciej Dobrzynski and
Jan B. Hoek and
Walter Kolch and
Babatunde A. Ogunnaike and
Boris N. Kholodenko},
title = {Emergence of bimodal cell population responses from the interplay
between analog single-cell signaling and protein expression noise},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {109},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-109},
doi = {10.1186/1752-0509-6-109},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BirtwistleRKADHKOK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BoeleOT12,
author = {Joost Boele and
Brett G. Olivier and
Bas Teusink},
title = {FAME, the Flux Analysis and Modeling Environment},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {8},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-8},
doi = {10.1186/1752-0509-6-8},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BoeleOT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BosiaOBCC12,
author = {Carla Bosia and
Matteo Osella and
Mariama El Baroudi and
Davide Cor{\`{a}} and
Michele Caselle},
title = {Gene autoregulation via intronic microRNAs and its functions},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {131},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-131},
doi = {10.1186/1752-0509-6-131},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BosiaOBCC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BravoOME12,
author = {Maria Bravo and
Thomas Orfeo and
Kenneth G. Mann and
Stephen J. Everse},
title = {Modeling of human factor Va inactivation by activated protein {C}},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {45},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-45},
doi = {10.1186/1752-0509-6-45},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BravoOME12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BrettnerM12,
author = {Leandra M. Brettner and
Joanna Masel},
title = {Protein stickiness, rather than number of functional protein-protein
interactions, predicts expression noise and plasticity in yeast},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {128},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-128},
doi = {10.1186/1752-0509-6-128},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BrettnerM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BrownL12,
author = {Sherry{-}Ann Brown and
Leslie M. Loew},
title = {Computational analysis of calcium signaling and membrane electrophysiology
in cerebellar Purkinje neurons associated with ataxia},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {70},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-70},
doi = {10.1186/1752-0509-6-70},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/BrownL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ByrneDS12,
author = {David Byrne and
Alexandra Dumitriu and
Daniel Segr{\`{e}}},
title = {Comparative multi-goal tradeoffs in systems engineering of microbial
metabolism},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {127},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-127},
doi = {10.1186/1752-0509-6-127},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ByrneDS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CarbonellFPF12,
author = {Pablo Carbonell and
Davide Fichera and
Shashi Bhushan Pandit and
Jean{-}Loup Faulon},
title = {Enumerating metabolic pathways for the production of heterologous
target chemicals in chassis organisms},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {10},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-10},
doi = {10.1186/1752-0509-6-10},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CarbonellFPF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CaspetaSANN12,
author = {Luis Caspeta and
Saeed Shoaie and
Rasmus Agren and
Intawat Nookaew and
Jens Nielsen},
title = {Genome-scale metabolic reconstructions of Pichia stipitis and Pichia
pastoris and in silico evaluation of their potentials},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {24},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-24},
doi = {10.1186/1752-0509-6-24},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CaspetaSANN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChavaliBTJPP12,
author = {Arvind K. Chavali and
Anna S. Blazier and
Jose L. Tlaxca and
Paul A. Jensen and
Richard D. Pearson and
Jason A. Papin},
title = {Metabolic network analysis predicts efficacy of FDA-approved drugs
targeting the causative agent of a neglected tropical disease},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {27},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-27},
doi = {10.1186/1752-0509-6-27},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChavaliBTJPP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChemmangattuvalappilTB12,
author = {Nishanth G. Chemmangattuvalappil and
Keith Task and
Ipsita Banerjee},
title = {An integer optimization algorithm for robust identification of non-linear
gene regulatory networks},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {119},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-119},
doi = {10.1186/1752-0509-6-119},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChemmangattuvalappilTB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChenH12,
author = {Bor{-}Sen Chen and
Chih{-}Yuan Hsu},
title = {Robust synchronization control scheme of a population of nonlinear
stochastic synthetic genetic oscillators under intrinsic and extrinsic
molecular noise via quorum sensing},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {136},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-136},
doi = {10.1186/1752-0509-6-136},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChenH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChenPRSMSS12,
author = {Zhengzhang Chen and
Kanchana Padmanabhan and
Andrea M. Rocha and
Yekaterina Shpanskaya and
James R. Mihelcic and
Kathleen Scott and
Nagiza F. Samatova},
title = {Spice: discovery of phenotype-determining component interplays},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {40},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-40},
doi = {10.1186/1752-0509-6-40},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ChenPRSMSS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChenYYAS12,
author = {Liang{-}Chun Chen and
Hsiang{-}Yuan Yeh and
Cheng{-}Yu Yeh and
Carlos Arias and
Von{-}Wun Soo},
title = {Identifying co-targets to fight drug resistance based on a random
walk model},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {5},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-5},
doi = {10.1186/1752-0509-6-5},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChenYYAS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChickarmaneOP12,
author = {Vijay Chickarmane and
Victor Olariu and
Carsten Peterson},
title = {Probing the role of stochasticity in a model of the embryonic stem
cell - heterogeneous gene expression and reprogramming efficiency},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {98},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-98},
doi = {10.1186/1752-0509-6-98},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChickarmaneOP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChouV12,
author = {I{-}Chun Chou and
Eberhard O. Voit},
title = {Estimation of dynamic flux profiles from metabolic time series data},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {84},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-84},
doi = {10.1186/1752-0509-6-84},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChouV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ChungL12,
author = {Bevan Chung and
Dong{-}Yup Lee},
title = {Computational codon optimization of synthetic gene for protein expression},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {134},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-134},
doi = {10.1186/1752-0509-6-134},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ChungL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ClarkDTKM12,
author = {Neil R. Clark and
Ruth Dannenfelser and
Christopher M. Tan and
Michael E. Komosinski and
Avi Ma'ayan},
title = {Sets2Networks: network inference from repeated observations of sets},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {89},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-89},
doi = {10.1186/1752-0509-6-89},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ClarkDTKM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CoskunQCCCYJDLOO12,
author = {Sarp A. Coskun and
Xinjian Qi and
Ali Cakmak and
En Cheng and
A. Erc{\"{u}}ment {\c{C}}i{\c{c}}ek and
Lei Yang and
Rishiraj Jadeja and
Ranjan K. Dash and
Nicola Lai and
Gultekin {\"{O}}zsoyoglu and
Z. Meral {\"{O}}zsoyoglu},
title = {PathCase-SB: integrating data sources and providing tools for systems
biology research},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {67},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-67},
doi = {10.1186/1752-0509-6-67},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CoskunQCCCYJDLOO12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CreamerSACTBHBHHP12,
author = {Matthew S. Creamer and
Edward C. Stites and
Meraj Aziz and
James A. Cahill and
Chin Wee Tan and
Michael E. Berens and
Haiyong Han and
Kimberly J. Bussey and
Daniel D. Von Hoff and
William S. Hlavacek and
Richard G. Posner},
title = {Specification, annotation, visualization and simulation of a large
rule-based model for {ERBB} receptor signaling},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {107},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-107},
doi = {10.1186/1752-0509-6-107},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CreamerSACTBHBHHP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CrespoRJKS12,
author = {Isaac Crespo and
Kirsten Roomp and
Wiktor Jurkowski and
Hiroaki Kitano and
Antonio del Sol},
title = {Gene regulatory network analysis supports inflammation as a key neurodegeneration
process in prion disease},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {132},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-132},
doi = {10.1186/1752-0509-6-132},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CrespoRJKS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CroftSJG12,
author = {Larry Croft and
Damian Szklarczyk and
Lars Juhl Jensen and
Jan Gorodkin},
title = {Multiple independent analyses reveal only transcription factors as
an enriched functional class associated with microRNAs},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {90},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-90},
doi = {10.1186/1752-0509-6-90},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CroftSJG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CrownAA12,
author = {Scott B. Crown and
Woo Ahn and
Maciek R. Antoniewicz},
title = {Rational design of \({}^{\mbox{13}}\)C-labeling experiments for metabolic
flux analysis in mammalian cells},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {43},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-43},
doi = {10.1186/1752-0509-6-43},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CrownAA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CruzHDWPHDG12,
author = {Ana Luisa B. Cruz and
Marit Hebly and
Giang{-}Huong Duong and
Sebastian A. Wahl and
Jack T. Pronk and
Joseph J. Heijnen and
Pascale A. S. Daran{-}Lapujade and
Walter M. van Gulik},
title = {Similar temperature dependencies of glycolytic enzymes: an evolutionary
adaptation to temperature dynamics?},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {151},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-151},
doi = {10.1186/1752-0509-6-151},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/CruzHDWPHDG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DAuriaDGKWCSLPH12,
author = {Kevin M. D'Auria and
Gina M. Donato and
Mary C. Gray and
Glynis L. Kolling and
Cirle A. Warren and
Lauren M. Cave and
Michael D. Solga and
Joanne A. Lannigan and
Jason A. Papin and
Erik L. Hewlett},
title = {Systems analysis of the transcriptional response of human ileocecal
epithelial cells to Clostridium difficile toxins and effects on cell
cycle control},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {2},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-2},
doi = {10.1186/1752-0509-6-2},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/DAuriaDGKWCSLPH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DasY12,
author = {Jishnu Das and
Haiyuan Yu},
title = {{HINT:} High-quality protein interactomes and their applications in
understanding human disease},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {92},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-92},
doi = {10.1186/1752-0509-6-92},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DasY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DongC12,
author = {Chao{-}Yi Dong and
Kwang{-}Hyun Cho},
title = {An optimally evolved connective ratio of neural networks that maximizes
the occurrence of synchronized bursting behavior},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {23},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-23},
doi = {10.1186/1752-0509-6-23},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DongC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DrawertEH12,
author = {Brian Drawert and
Stefan Engblom and
Andreas Hellander},
title = {{URDME:} a modular framework for stochastic simulation of reaction-transport
processes in complex geometries},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {76},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-76},
doi = {10.1186/1752-0509-6-76},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DrawertEH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/EssackMSB12,
author = {Magbubah Essack and
Cameron MacPherson and
Sebastian Schmeier and
Vladimir B. Bajic},
title = {Identification of estrogen responsive genes using esophageal squamous
cell carcinoma {(ESCC)} as a model},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {135},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-135},
doi = {10.1186/1752-0509-6-135},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/EssackMSB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FacchettiZA12,
author = {Giuseppe Facchetti and
Mattia Zampieri and
Claudio Altafini},
title = {Predicting and characterizing selective multiple drug treatments for
metabolic diseases and cancer},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {115},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-115},
doi = {10.1186/1752-0509-6-115},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/FacchettiZA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FanGPLTPL12,
author = {ShengJun Fan and
Qiang Geng and
Zhen{-}Yu Pan and
Xin Li and
Lu Tie and
Yan Pan and
Xuejun Li},
title = {Clarifying off-target effects for torcetrapib using network pharmacology
and reverse docking approach},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {152},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-152},
doi = {10.1186/1752-0509-6-152},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FanGPLTPL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FengXCT12,
author = {Xueyang Feng and
You Xu and
Yixin Chen and
Yinjie J. Tang},
title = {MicrobesFlux: a web platform for drafting metabolic models from the
{KEGG} database},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {94},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-94},
doi = {10.1186/1752-0509-6-94},
timestamp = {Thu, 12 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/FengXCT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FloresLYSRLVLM12,
author = {Ricardo J. Flores and
Yiting Li and
Alexander Yu and
Jianhe Shen and
Pulivarthi H. Rao and
Serrine S. Lau and
Marina Vannucci and
Ching C. Lau and
Tsz{-}Kwong Man},
title = {A systems biology approach reveals common metastatic pathways in osteosarcoma},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {50},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-50},
doi = {10.1186/1752-0509-6-50},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FloresLYSRLVLM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FuTDWCLZGC12,
author = {Jihong Fu and
Wentao Tang and
Peng Du and
Guanghui Wang and
Wei Chen and
Jingming Li and
Yunxiang Zhu and
Jun Gao and
Long Cui},
title = {Identifying MicroRNA-mRNA regulatory network in colorectal cancer
by a combination of expression profile and bioinformatics analysis},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {68},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-68},
doi = {10.1186/1752-0509-6-68},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/FuTDWCLZGC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/FujitaSKSPM12,
author = {Andr{\'{e}} Fujita and
Patricia Severino and
Kaname Kojima and
Jo{\~{a}}o Ricardo Sato and
Alexandre Galv{\~{a}}o Patriota and
Satoru Miyano},
title = {Functional clustering of time series gene expression data by Granger
causality},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {137},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-137},
doi = {10.1186/1752-0509-6-137},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/FujitaSKSPM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GidvaniSLDMDI12,
author = {Rohan D. Gidvani and
Peter Sudmant and
Grace Li and
Lance F. DaSilva and
Brendan J. McConkey and
Bernard P. Duncker and
Brian P. Ingalls},
title = {A quantitative model of the initiation of {DNA} replication in Saccharomyces
cerevisiae predicts the effects of system perturbations},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {78},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-78},
doi = {10.1186/1752-0509-6-78},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GidvaniSLDMDI12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GonnetDWS12,
author = {Pedro Gonnet and
Sotiris Dimopoulos and
Lukas Widmer and
J{\"{o}}rg Stelling},
title = {A specialized {ODE} integrator for the efficient computation of parameter
sensitivities},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {46},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-46},
doi = {10.1186/1752-0509-6-46},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GonnetDWS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GrieneisenSHM12,
author = {Ver{\^{o}}nica A. Grieneisen and
Ben Scheres and
Paulien Hogeweg and
Athanasius F. M. Mar{\'{e}}e},
title = {Morphogengineering roots: comparing mechanisms of morphogen gradient
formation},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {37},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-37},
doi = {10.1186/1752-0509-6-37},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GrieneisenSHM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GuLCZW12,
author = {Zuguang Gu and
Jialin Liu and
Kunming Cao and
Junfeng Zhang and
Jin Wang},
title = {Centrality-based pathway enrichment: a systematic approach for finding
significant pathways dominated by key genes},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {56},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-56},
doi = {10.1186/1752-0509-6-56},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GuLCZW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GuZW12,
author = {Zuguang Gu and
Chenyu Zhang and
Jin Wang},
title = {Gene regulation is governed by a core network in hepatocellular carcinoma},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {32},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-32},
doi = {10.1186/1752-0509-6-32},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GuZW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HaoRL12,
author = {Dapeng Hao and
Cong Ren and
Chuanxing Li},
title = {Revisiting the variation of clustering coefficient of biological networks
suggests new modular structure},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {34},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-34},
doi = {10.1186/1752-0509-6-34},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HaoRL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HauryMVV12,
author = {Anne{-}Claire Haury and
Fantine Mordelet and
Paola Vera{-}Licona and
Jean{-}Philippe Vert},
title = {{TIGRESS:} Trustful Inference of Gene REgulation using Stability Selection},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {145},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-145},
doi = {10.1186/1752-0509-6-145},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HauryMVV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HeavnerSBMW12,
author = {Benjamin D. Heavner and
Kieran Smallbone and
Brandon Barker and
Pedro Mendes and
Larry P. Walker},
title = {Yeast 5 - an expanded reconstruction of the Saccharomyces cerevisiae
metabolic network},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {55},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-55},
doi = {10.1186/1752-0509-6-55},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HeavnerSBMW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HelikarKMBRMWSLR12,
author = {Tom{\'{a}}s Helikar and
Bryan M. Kowal and
Sean McClenathan and
Mitchell Bruckner and
Thaine W. Rowley and
Alex Madrahimov and
Benjamin Wicks and
Manish Shrestha and
Kahani Limbu and
Jim A. Rogers},
title = {The Cell Collective: Toward an open and collaborative approach to
systems biology},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {96},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-96},
doi = {10.1186/1752-0509-6-96},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HelikarKMBRMWSLR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HepburnCWS12,
author = {Iain Hepburn and
Weiliang Chen and
Stefan Wils and
Erik De Schutter},
title = {{STEPS:} efficient simulation of stochastic reaction-diffusion models
in realistic morphologies},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {36},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-36},
doi = {10.1186/1752-0509-6-36},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HepburnCWS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HoekM12,
author = {Milan van Hoek and
Roeland Merks},
title = {Redox balance is key to explaining full vs. partial switching to low-yield
metabolism},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {22},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-22},
doi = {10.1186/1752-0509-6-22},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HoekM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HongKKKSCS12,
author = {Ji{-}Young Hong and
Geun{-}Hong Kim and
Jun{-}Woo Kim and
Soon{-}Sung Kwon and
Eisuke F. Sato and
Kwang{-}Hyun Cho and
Eun Bo Shim},
title = {Computational modeling of apoptotic signaling pathways induced by
cisplatin},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {122},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-122},
doi = {10.1186/1752-0509-6-122},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HongKKKSCS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HongLKKCS12,
author = {Changki Hong and
Minho Lee and
Dongsup Kim and
Dong San Kim and
Kwang{-}Hyun Cho and
Insik Shin},
title = {A checkpoints capturing timing-robust Boolean model of the budding
yeast cell cycle regulatory network},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {129},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-129},
doi = {10.1186/1752-0509-6-129},
timestamp = {Thu, 05 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HongLKKCS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HongX0T12,
author = {Tian Hong and
Jianhua Xing and
Liwu Li and
John J. Tyson},
title = {A simple theoretical framework for understanding heterogeneous differentiation
of CD4\({}^{\mbox{+}}\) {T} cells},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {66},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-66},
doi = {10.1186/1752-0509-6-66},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HongX0T12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/IngkasuwanNPTBMCTC12,
author = {Papapit Ingkasuwan and
Supatcharee Netrphan and
Sukon Prasitwattanaseree and
Morakot Tanticharoen and
Sakarindr Bhumiratana and
Asawin Meechai and
Jeerayut Chaijaruwanich and
Hideki Takahashi and
Supapon Cheevadhanarak},
title = {Inferring transcriptional gene regulation network of starch metabolism
in Arabidopsis thaliana leaves using graphical Gaussian model},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {100},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-100},
doi = {10.1186/1752-0509-6-100},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/IngkasuwanNPTBMCTC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JiaSG12,
author = {Gengjie Jia and
Gregory Stephanopoulos and
Rudiyanto Gunawan},
title = {Incremental parameter estimation of kinetic metabolic network models},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {142},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-142},
doi = {10.1186/1752-0509-6-142},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JiaSG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JungreuthmayerZ12,
author = {Christian Jungreuthmayer and
J{\"{u}}rgen Zanghellini},
title = {Designing optimal cell factories: integer programming couples elementary
mode analysis with regulation},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {103},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-103},
doi = {10.1186/1752-0509-6-103},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/JungreuthmayerZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Kang12,
author = {Hye{-}Won Kang},
title = {A multiscale approximation in a heat shock response model of E. coli},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {143},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-143},
doi = {10.1186/1752-0509-6-143},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Kang12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KarelinaZDSAFD12,
author = {Tatiana A. Karelina and
Kirill V. Zhudenkov and
Oleg O. Demin and
Dmitry V. Svetlichny and
Balaji Agoram and
David Fairman and
Oleg V. Demin},
title = {Regulation of leukotriene and 5oxoETE synthesis and the effect of
5-lipoxygenase inhibitors: a mathematical modeling approach},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {141},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-141},
doi = {10.1186/1752-0509-6-141},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KarelinaZDSAFD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KarlstadtFKRRH12,
author = {Anja Karlst{\"{a}}dt and
Daniela Fliegner and
Georgios Kararigas and
Hugo Sanchez Ruderisch and
Vera Regitz{-}Zagrosek and
Hermann{-}Georg Holzh{\"{u}}tter},
title = {CardioNet: {A} human metabolic network suited for the study of cardiomyocyte
metabolism},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {114},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-114},
doi = {10.1186/1752-0509-6-114},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KarlstadtFKRRH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KaschekT12,
author = {Daniel Kaschek and
Jens Timmer},
title = {A variational approach to parameter estimation in ordinary differential
equations},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {99},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-99},
doi = {10.1186/1752-0509-6-99},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KaschekT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KentHM12,
author = {Edward Kent and
Stefan Hoops and
Pedro Mendes},
title = {Condor-COPASI: high-throughput computing for biochemical networks},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {91},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-91},
doi = {10.1186/1752-0509-6-91},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KentHM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KimKKLC12,
author = {Man{-}Sun Kim and
Jeong{-}Rae Kim and
Dong San Kim and
Arthur D. Lander and
Kwang{-}Hyun Cho},
title = {Spatiotemporal network motif reveals the biological traits of developmental
gene regulatory networks in Drosophila melanogaster},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {31},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-31},
doi = {10.1186/1752-0509-6-31},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KimKKLC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KirouacSSBLS12,
author = {Daniel C. Kirouac and
Julio Saez{-}Rodriguez and
Jennifer Swantek and
John M. Burke and
Douglas A. Lauffenburger and
Peter K. Sorger},
title = {Creating and analyzing pathway and protein interaction compendia for
modelling signal transduction networks},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {29},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-29},
doi = {10.1186/1752-0509-6-29},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KirouacSSBLS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KlanchuiKPCM12,
author = {Amornpan Klanchui and
Chiraphan Khannapho and
Atchara Phodee and
Supapon Cheevadhanarak and
Asawin Meechai},
title = {iAK692: {A} genome-scale metabolic model of Spirulina platensis {C1}},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {71},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-71},
doi = {10.1186/1752-0509-6-71},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KlanchuiKPCM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KleessenN12,
author = {Sabrina Kleessen and
Zoran Nikoloski},
title = {Dynamic regulatory on/off minimization for biological systems under
internal temporal perturbations},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {16},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-16},
doi = {10.1186/1752-0509-6-16},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KleessenN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KohD12,
author = {Rachel S. Koh and
Mary J. Dunlop},
title = {Modeling suggests that gene circuit architecture controls phenotypic
variability in a bacterial persistence network},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {47},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-47},
doi = {10.1186/1752-0509-6-47},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KohD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KolarMMLB12,
author = {Michal Kol{\'{a}}r and
J{\"{o}}rn Meier and
Ville Mustonen and
Michael L{\"{a}}ssig and
Johannes Berg},
title = {GraphAlignment: Bayesian pairwise alignment of biological networks},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {144},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-144},
doi = {10.1186/1752-0509-6-144},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KolarMMLB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KremlingPCPSL12,
author = {Andreas Kremling and
Katharina Pfl{\"{u}}ger{-}Grau and
Max Chavarr{\'{\i}}a and
Jacek Puchalka and
V{\'{\i}}tor A. P. Martins dos Santos and
Victor de Lorenzo},
title = {Modeling and analysis of flux distributions in the two branches of
the phosphotransferase system in Pseudomonas putida},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {149},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-149},
doi = {10.1186/1752-0509-6-149},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KremlingPCPSL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KreutzRT12,
author = {Clemens Kreutz and
Andreas Raue and
Jens Timmer},
title = {Likelihood based observability analysis and confidence intervals for
predictions of dynamic models},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {120},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-120},
doi = {10.1186/1752-0509-6-120},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KreutzRT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KumarKBCZSPCB12,
author = {Shyamesh Kumar and
Dusan Kunec and
Joram J. Buza and
Hsin{-}I Chiang and
Huaijun Zhou and
Sugalesini Subramaniam and
Ken Pendarvis and
Hans H. Cheng and
Shane C. Burgess},
title = {Nuclear Factor kappa {B} is central to Marek's Disease herpesvirus
induced neoplastic transformation of {CD30} expressing lymphocytes
in-vivo},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {123},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-123},
doi = {10.1186/1752-0509-6-123},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KumarKBCZSPCB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LangerPGVWT12,
author = {Bettina M. L{\"{a}}nger and
Cristina Pou{-}Barreto and
Carlos Gonz{\'{a}}lez{-}Alc{\'{o}}n and
Basilio Valladares and
Bettina Wimmer and
N{\'{e}}stor V. Torres},
title = {Modeling of leishmaniasis infection dynamics: novel application to
the design of effective therapies},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {1},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-1},
doi = {10.1186/1752-0509-6-1},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LangerPGVWT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LaoSSWW12,
author = {Angelyn Lao and
Vanessa Schmidt and
Yvonne Schmitz and
Thomas E. Willnow and
Olaf Wolkenhauer},
title = {Multi-compartmental modeling of SORLA's influence on amyloidogenic
processing in Alzheimer's disease},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {74},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-74},
doi = {10.1186/1752-0509-6-74},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LaoSSWW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LebedevaYLMH12,
author = {Galina Lebedeva and
Azusa Yamaguchi and
Simon P. Langdon and
Kenneth Macleod and
David J. Harrison},
title = {A model of estrogen-related gene expression reveals non-linear effects
in transcriptional response to tamoxifen},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {138},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-138},
doi = {10.1186/1752-0509-6-138},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LebedevaYLMH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LeccaMFCP12,
author = {Paola Lecca and
Daniele Morpurgo and
Gianluca Fantaccini and
Alessandro Casagrande and
Corrado Priami},
title = {Inferring biochemical reaction pathways: the case of the gemcitabine
pharmacokinetics},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {51},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-51},
doi = {10.1186/1752-0509-6-51},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/LeccaMFCP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LeeBLKOJKLISCRK12,
author = {Hee Lee and
Taejeong Bae and
Ji{-}Hyun Lee and
Dae Kim and
Young Oh and
Yeongjun Jang and
Ji{-}Tea Kim and
Jong Jun Lee and
Alessio Innocenti and
Claudiu T. Supuran and
Luonan Chen and
Kyoohyoung Rho and
Sunghoon Kim},
title = {Rational drug repositioning guided by an integrated pharmacological
network of protein, disease and drug},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {80},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-80},
doi = {10.1186/1752-0509-6-80},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LeeBLKOJKLISCRK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LeeSDMWKMS12,
author = {Dave Lee and
Kieran Smallbone and
Warwick B. Dunn and
Ettore Murabito and
Catherine Winder and
Douglas B. Kell and
Pedro Mendes and
Neil Swainston},
title = {Improving metabolic flux predictions using absolute gene expression
data},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {73},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-73},
doi = {10.1186/1752-0509-6-73},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LeeSDMWKMS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiWBYS12,
author = {Wenting Li and
Rui Wang and
Linfu Bai and
Zhangming Yan and
Zhirong Sun},
title = {Cancer core modules identification through genomic and transcriptomic
changes correlation detection at network level},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {64},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-64},
doi = {10.1186/1752-0509-6-64},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiWBYS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiZWP12,
author = {Min Li and
Hanhui Zhang and
Jianxin Wang and
Yi Pan},
title = {A new essential protein discovery method based on the integration
of protein-protein interaction and gene expression data},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {15},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-15},
doi = {10.1186/1752-0509-6-15},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiZWP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiangH12,
author = {Jinghang Liang and
Jie Han},
title = {Stochastic Boolean networks: An efficient approach to modeling gene
regulatory networks},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {113},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-113},
doi = {10.1186/1752-0509-6-113},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiangH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LinCCOJH12,
author = {Chen{-}Ching Lin and
Ya{-}Jen Chen and
Cho{-}Yi Chen and
Yen{-}Jen Oyang and
Hsueh{-}Fen Juan and
Hsuan{-}Cheng Huang},
title = {Crosstalk between transcription factors and microRNAs in human protein
interaction network},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {18},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-18},
doi = {10.1186/1752-0509-6-18},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LinCCOJH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LindeHFBGH12,
author = {J{\"{o}}rg Linde and
Peter Hortschansky and
Eugen Fazius and
Axel A. Brakhage and
Reinhard Guthke and
Hubertus Haas},
title = {Regulatory interactions for iron homeostasis in Aspergillus fumigatus
inferred by a Systems Biology approach},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {6},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-6},
doi = {10.1186/1752-0509-6-6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LindeHFBGH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuKBC12,
author = {Yu Liu and
Mehmet Koyut{\"{u}}rk and
Jill S. Barnholtz{-}Sloan and
Mark R. Chance},
title = {Gene interaction enrichment and network analysis to identify dysregulated
pathways and their interactions in complex diseases},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {65},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-65},
doi = {10.1186/1752-0509-6-65},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuKBC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiuTWFHCPHLC12,
author = {Yushu Liu and
Pei{-}Wen Tsai and
Yong Wang and
Tan{-}Chi Fan and
Chia{-}Hung Hsieh and
Margaret Dah{-}Tsyr Chang and
Tun{-}Wen Pai and
Chien{-}Fu Huang and
Chung{-}Yu Lan and
Hao{-}Teng Chang},
title = {Chemoattraction of macrophages by secretory molecules derived from
cells expressing the signal peptide of eosinophil cationic protein},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {105},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-105},
doi = {10.1186/1752-0509-6-105},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiuTWFHCPHLC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LoRDZSBY12,
author = {Kenneth Lo and
Adrian E. Raftery and
Kenneth M. Dombek and
Jun Zhu and
Eric E. Schadt and
Roger Eugene Bumgarner and
Ka Yee Yeung},
title = {Integrating external biological knowledge in the construction of regulatory
networks from time-series expression data},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {101},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-101},
doi = {10.1186/1752-0509-6-101},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LoRDZSBY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LoiraDNS12,
author = {Nicol{\'{a}}s Loira and
Thierry Dulermo and
Jean{-}Marc Nicaud and
David James Sherman},
title = {A genome-scale metabolic model of the lipid-accumulating yeast Yarrowia
lipolytica},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {35},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-35},
doi = {10.1186/1752-0509-6-35},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LoiraDNS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LucianiB12,
author = {Davide Luciani and
Gianfranco Bazzoni},
title = {From networks of protein interactions to networks of functional dependencies},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {44},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-44},
doi = {10.1186/1752-0509-6-44},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LucianiB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MaiwaldBRHSSBKT12,
author = {Thomas Maiwald and
Julie Blumberg and
Andreas Raue and
Stefan Hengl and
Marcel Schilling and
Sherwin K. B. Sy and
Verena Becker and
Ursula Klingm{\"{u}}ller and
Jens Timmer},
title = {In silico labeling reveals the time-dependent label half-life and
transit-time in dynamical systems},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {13},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-13},
doi = {10.1186/1752-0509-6-13},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MaiwaldBRHSSBKT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MartinTSDMWPHP12,
author = {Florian Martin and
Ty M. Thomson and
Alain Sewer and
David A. Drubin and
Carole Mathis and
Dirk Weisensee and
Dexter Pratt and
Julia Hoeng and
Manuel C. Peitsch},
title = {Assessment of network perturbation amplitudes by applying high-throughput
data to causal biological networks},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {54},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-54},
doi = {10.1186/1752-0509-6-54},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MartinTSDMWPHP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MarvelW12,
author = {Skylar W. Marvel and
Cranos M. Williams},
title = {Set membership experimental design for biological systems},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {21},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-21},
doi = {10.1186/1752-0509-6-21},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/MarvelW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MathewJZZSB12,
author = {Shibin Mathew and
Maria Jaramillo and
Xinan Zhang and
Li Zhang and
Alejandro Soto{-}Guti{\'{e}}rrez and
Ipsita Banerjee},
title = {Analysis of alternative signaling pathways of endoderm induction of
human embryonic stem cells identifies context specific differences},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {154},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-154},
doi = {10.1186/1752-0509-6-154},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MathewJZZSB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/McAnultyYFS12,
author = {Michael J. McAnulty and
Jiun Y. Yen and
Benjamin G. Freedman and
Ryan S. Senger},
title = {Genome-scale modeling using flux ratio constraints to enable metabolic
engineering of clostridial metabolism in silico},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {42},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-42},
doi = {10.1186/1752-0509-6-42},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/McAnultyYFS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/McDermottDCRKW12,
author = {Jason E. McDermott and
Deborah L. Diamond and
Courtney D. Corley and
Angela L. Rasmussen and
Michael G. Katze and
Katrina M. Waters},
title = {Topological analysis of protein co-abundance networks identifies novel
host targets important for {HCV} infection and pathogenesis},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {28},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-28},
doi = {10.1186/1752-0509-6-28},
timestamp = {Fri, 19 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/McDermottDCRKW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MizunoIOKMGMMKT12,
author = {Satoshi Mizuno and
Risa Iijima and
Soichi Ogishima and
Masataka Kikuchi and
Yukiko Matsuoka and
Samik Ghosh and
Tadashi Miyamoto and
Akinori Miyashita and
Ryozo Kuwano and
Hiroshi Tanaka},
title = {AlzPathway: a comprehensive map of signaling pathways of Alzheimer's
disease},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {52},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-52},
doi = {10.1186/1752-0509-6-52},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MizunoIOKMGMMKT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MorenoA12,
author = {{\'{A}}ngel Go{\~{n}}i Moreno and
Martyn Amos},
title = {A reconfigurable {NAND/NOR} genetic logic gate},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {126},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-126},
doi = {10.1186/1752-0509-6-126},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MorenoA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MorshedCV12,
author = {Nizamul Morshed and
Madhu Chetty and
Xuan Vinh Nguyen},
title = {Simultaneous learning of instantaneous and time-delayed genetic interactions
using novel information theoretic scoring technique},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {62},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-62},
doi = {10.1186/1752-0509-6-62},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MorshedCV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NavidA12,
author = {Ali Navid and
Eivind Almaas},
title = {Genome-level transcription data of Yersinia pestis analyzed with a
New metabolic constraint-based approach},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {150},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-150},
doi = {10.1186/1752-0509-6-150},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NavidA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/NoorLM12,
author = {Elad Noor and
Nathan E. Lewis and
Ron Milo},
title = {A proof for loop-law constraints in stoichiometric metabolic networks},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {140},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-140},
doi = {10.1186/1752-0509-6-140},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/NoorLM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/OldhamLH12,
author = {Michael C. Oldham and
Peter Langfelder and
Steve Horvath},
title = {Network methods for describing sample relationships in genomic datasets:
application to Huntington's disease},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {63},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-63},
doi = {10.1186/1752-0509-6-63},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/OldhamLH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/OrthP12,
author = {Jeffrey D. Orth and
Bernhard {\O}. Palsson},
title = {Gap-filling analysis of the iJO1366 Escherichia coli metabolic network
reconstruction for discovery of metabolic functions},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {30},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-30},
doi = {10.1186/1752-0509-6-30},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/OrthP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Otaki12,
author = {Joji M. Otaki},
title = {Structural analysis of eyespots: dynamics of morphogenic signals that
govern elemental positions in butterfly wings},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {17},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-17},
doi = {10.1186/1752-0509-6-17},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Otaki12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PahleCMM12,
author = {J{\"{u}}rgen Pahle and
Joseph D. Challenger and
Pedro Mendes and
Alan J. McKane},
title = {Biochemical fluctuations, optimisation and the linear noise approximation},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {86},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-86},
doi = {10.1186/1752-0509-6-86},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PahleCMM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ParkPKKKL12,
author = {Jong Myoung Park and
Hye Min Park and
Won Jun Kim and
Hyun Uk Kim and
Tae Yong Kim and
Sang Yup Lee},
title = {Flux variability scanning based on enforced objective flux for identifying
gene amplification targets},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {106},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-106},
doi = {10.1186/1752-0509-6-106},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ParkPKKKL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PatrickCDKB12,
author = {Ralph Patrick and
Kim{-}Anh L{\^{e}} Cao and
Melissa J. Davis and
Bostjan Kobe and
Mikael Bod{\'{e}}n},
title = {Mapping the stabilome: a novel computational method for classifying
metabolic protein stability},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {60},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-60},
doi = {10.1186/1752-0509-6-60},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/PatrickCDKB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PengW0LWP12,
author = {Wei Peng and
Jianxin Wang and
Weiping Wang and
Qing Liu and
Fang{-}Xiang Wu and
Yi Pan},
title = {Iteration method for predicting essential proteins based on orthology
and protein-protein interaction networks},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {87},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-87},
doi = {10.1186/1752-0509-6-87},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PengW0LWP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PirGWRKZO12,
author = {Pinar Pir and
Alex Gutteridge and
Jian Wu and
Bharat Rash and
Douglas B. Kell and
Nianshu Zhang and
Stephen G. Oliver},
title = {The genetic control of growth rate: a systems biology study in yeast},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {4},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-4},
doi = {10.1186/1752-0509-6-4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PirGWRKZO12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PoltzN12,
author = {Rainer Poltz and
Michael Naumann},
title = {Dynamics of p53 and NF-{\(\kappa\)}},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {125},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-125},
doi = {10.1186/1752-0509-6-125},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/PoltzN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Radde12,
author = {Nicole Radde},
title = {Analyzing fixed points of intracellular regulation networks with interrelated
feedback topology},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {57},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-57},
doi = {10.1186/1752-0509-6-57},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Radde12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RohnHJJS12,
author = {Hendrik Rohn and
Anja Hartmann and
Astrid Junker and
Bj{\"{o}}rn H. Junker and
Falk Schreiber},
title = {FluxMap: {A} {VANTED} add-on for the visual exploration of flux distributions
in biological networks},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {33},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-33},
doi = {10.1186/1752-0509-6-33},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RohnHJJS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RohnJHGTKCKS12,
author = {Hendrik Rohn and
Astrid Junker and
Anja Hartmann and
Eva Grafahrend{-}Belau and
Hendrik Treutler and
Matthias Klapperst{\"{u}}ck and
Tobias Czauderna and
Christian Klukas and
Falk Schreiber},
title = {{VANTED} v2: a framework for systems biology applications},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {139},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-139},
doi = {10.1186/1752-0509-6-139},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RohnJHGTKCKS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RosaJOMQC12,
author = {Bruce A. Rosa and
Yuhua Jiao and
Sookyung Oh and
Beronda L. Montgomery and
Wensheng Qin and
Jin Chen},
title = {Frequency-based time-series gene expression recomposition using {PRIISM}},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {69},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-69},
doi = {10.1186/1752-0509-6-69},
timestamp = {Fri, 18 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RosaJOMQC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RybinskiLBLG12,
author = {Mikolaj Rybinski and
Michal Lula and
Pawel Banasik and
Slawomir Lasota and
Anna Gambin},
title = {Tav4SB: integrating tools for analysis of kinetic models of biological
systems},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {25},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-25},
doi = {10.1186/1752-0509-6-25},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RybinskiLBLG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SanzCBM12,
author = {Joaqu{\'{\i}}n Sanz and
Emanuele Cozzo and
Javier Borge{-}Holthoefer and
Yamir Moreno},
title = {Topological effects of data incompleteness of gene regulatory networks},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {110},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-110},
doi = {10.1186/1752-0509-6-110},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SanzCBM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SarmaG12,
author = {Uddipan Sarma and
Indira Ghosh},
title = {Different designs of kinase-phosphatase interactions and phosphatase
sequestration shapes the robustness and signal flow in the {MAPK}
cascade},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {82},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-82},
doi = {10.1186/1752-0509-6-82},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SarmaG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SavirWATF12,
author = {Yonatan Savir and
Nir Waysbort and
Yaron E. Antebi and
Tsvi Tlusty and
Nir Friedman},
title = {Balancing speed and accuracy of polyclonal {T} cell activation: a
role for extracellular feedback},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {111},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-111},
doi = {10.1186/1752-0509-6-111},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SavirWATF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SchellenbergerZCMPSROP12,
author = {Jan Schellenberger and
Daniel C. Zielinski and
Wing Choi and
Sunthosh Madireddi and
Vasiliy Portnoy and
David A. Scott and
Jennifer L. Reed and
Andrei Osterman and
Bernhard {\O}. Palsson},
title = {Predicting outcomes of steady-state \({}^{\mbox{13}}\)C isotope tracing
experiments using Monte Carlo sampling},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {9},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-9},
doi = {10.1186/1752-0509-6-9},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SchellenbergerZCMPSROP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SchmidlHLGT12,
author = {Daniel Schmidl and
Sabine Hug and
Wei Li and
Matthias B. Greiter and
Fabian J. Theis},
title = {Bayesian model selection validates a biokinetic model for zirconium
processing in humans},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {95},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-95},
doi = {10.1186/1752-0509-6-95},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SchmidlHLGT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SchulzDGZEB12,
author = {Marcel H. Schulz and
William E. Devanny and
Anthony Gitter and
Shan Zhong and
Jason Ernst and
Ziv Bar{-}Joseph},
title = {{DREM} 2.0: Improved reconstruction of dynamic regulatory networks
from time-series expression data},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {104},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-104},
doi = {10.1186/1752-0509-6-104},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SchulzDGZEB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ShoemakerFEMWWMKK12,
author = {Jason E. Shoemaker and
Satoshi Fukuyama and
Amie J. Eisfeld and
Yukiko Muramoto and
Shinji Watanabe and
Tokiko Watanabe and
Yukiko Matsuoka and
Hiroaki Kitano and
Yoshihiro Kawaoka},
title = {Integrated network analysis reveals a novel role for the cell cycle
in 2009 pandemic influenza virus-induced inflammation in macaque lungs},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {117},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-117},
doi = {10.1186/1752-0509-6-117},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ShoemakerFEMWWMKK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SimoesTE12,
author = {Ricardo de Matos Simoes and
Shailesh Tripathi and
Frank Emmert{-}Streib},
title = {Organizational structure and the periphery of the gene regulatory
network in B-cell lymphoma},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {38},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-38},
doi = {10.1186/1752-0509-6-38},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SimoesTE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SohnKLL12,
author = {Seung Sohn and
Tae Kim and
Jay H. Lee and
Sang Lee},
title = {Genome-scale metabolic model of the fission yeast Schizosaccharomyces
pombe and the reconciliation of in silico/in vivo mutant growth},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {49},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-49},
doi = {10.1186/1752-0509-6-49},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SohnKLL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SonnenscheinDLEBZBH12,
author = {Nikolaus Sonnenschein and
Jos{\'{e}} Felipe Golib Dzib and
Annick Lesne and
Sebastian Eilebrecht and
Sheerazed Boulkroun and
Maria{-}Christina Zennaro and
Arndt Benecke and
Marc{-}Thorsten H{\"{u}}tt},
title = {A network perspective on metabolic inconsistency},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {41},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-41},
doi = {10.1186/1752-0509-6-41},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SonnenscheinDLEBZBH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SridharanYHL12,
author = {Gautham Vivek Sridharan and
Michael Yi and
Soha Hassoun and
Kyongbum Lee},
title = {Metabolic Flux-Based Modularity using Shortest Retroactive distances},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {155},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-155},
doi = {10.1186/1752-0509-6-155},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/SridharanYHL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/StiglerC12,
author = {Brandilyn Stigler and
Helen M. Chamberlin},
title = {A regulatory network modeled from wild-type gene expression data guides
functional predictions in Caenorhabditis elegans development},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {77},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-77},
doi = {10.1186/1752-0509-6-77},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/StiglerC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/StollVBC12,
author = {Gautier Stoll and
Eric Viara and
Emmanuel Barillot and
Laurence Calzone},
title = {Continuous time boolean modeling for biological signaling: application
of Gillespie algorithm},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {116},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-116},
doi = {10.1186/1752-0509-6-116},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/StollVBC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SurovtsovaSHSK12,
author = {Irina Surovtsova and
Natalia Simus and
Katrin H{\"{u}}bner and
Sven Sahle and
Ursula Kummer},
title = {Simplification of biochemical models: a general approach based on
the analysis of the impact of individual species and reactions on
the systems dynamics},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {14},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-14},
doi = {10.1186/1752-0509-6-14},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SurovtsovaSHSK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SzekelyBEZ12,
author = {Tam{\'{a}}s Sz{\'{e}}kely and
Kevin Burrage and
Radek Erban and
Konstantinos C. Zygalakis},
title = {A higher-order numerical framework for stochastic simulation of chemical
reaction systems},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {85},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-85},
doi = {10.1186/1752-0509-6-85},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SzekelyBEZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SzomolayS12,
author = {Barbara Szomolay and
Vahid Shahrezaei},
title = {Bell-shaped and ultrasensitive dose-response in phosphorylation-dephosphorylation
cycles: the role of kinase-phosphatase complex formation},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {26},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-26},
doi = {10.1186/1752-0509-6-26},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SzomolayS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TejeraBR12,
author = {Eduardo Tejera and
Jo{\~{a}}o Bernardes and
Irene Rebelo},
title = {Preeclampsia: a bioinformatics approach through protein-protein interaction
networks analysis},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {97},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-97},
doi = {10.1186/1752-0509-6-97},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TejeraBR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TerfveCHMGMILS12,
author = {Camille Terfve and
Thomas Cokelaer and
David Henriques and
Aidan MacNamara and
Emanuel J. V. Gon{\c{c}}alves and
Melody K. Morris and
Martijn P. van Iersel and
Douglas A. Lauffenburger and
Julio Saez{-}Rodriguez},
title = {CellNOptR: a flexible toolkit to train protein signaling networks
to data using multiple logic formalisms},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {133},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-133},
doi = {10.1186/1752-0509-6-133},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TerfveCHMGMILS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ThingnesLGOH12,
author = {Josef Thingnes and
Timothy J. Lavelle and
Arne B. Gjuvsland and
Stig W. Omholt and
Eivind Hovig},
title = {Towards a quantitative understanding of the {MITF-PIAS3-STAT3} connection},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {11},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-11},
doi = {10.1186/1752-0509-6-11},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ThingnesLGOH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ThomasSG12,
author = {Philipp Thomas and
Arthur V. Straube and
Ramon Grima},
title = {The slow-scale linear noise approximation: an accurate, reduced stochastic
description of biochemical networks under timescale separation conditions},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {39},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-39},
doi = {10.1186/1752-0509-6-39},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/ThomasSG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TitsiasHLR12,
author = {Michalis K. Titsias and
Antti Honkela and
Neil D. Lawrence and
Magnus Rattray},
title = {Identifying targets of multiple co-regulating transcription factors
from expression time-series by Bayesian model comparison},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {53},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-53},
doi = {10.1186/1752-0509-6-53},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TitsiasHLR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TondelIGOM12,
author = {Kristin T{\o}ndel and
Ulf G. Indahl and
Arne B. Gjuvsland and
Stig W. Omholt and
Harald Martens},
title = {Multi-way metamodelling facilitates insight into the complex input-output
maps of nonlinear dynamic models},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {88},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-88},
doi = {10.1186/1752-0509-6-88},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TondelIGOM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TopferJN12,
author = {Nadine T{\"{o}}pfer and
Szymon Jozefczuk and
Zoran Nikoloski},
title = {Integration of time-resolved transcriptomics data with flux-based
methods reveals stress-induced metabolic adaptation in Escherichia
coli},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {148},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-148},
doi = {10.1186/1752-0509-6-148},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TopferJN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TsujiIA12,
author = {Shingo Tsuji and
Sigeo Ihara and
Hiroyuki Aburatani},
title = {A simple knowledge-based mining method for exploring hidden key molecules
in a human biomolecular network},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {124},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-124},
doi = {10.1186/1752-0509-6-124},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/TsujiIA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/VilasBGBA12,
author = {Carlos Vilas and
Eva Balsa{-}Canto and
Maria{-}Sonia G. Garc{\'{\i}}a and
Julio R. Banga and
Antonio A. Alonso},
title = {Dynamic optimization of distributed biological systems using robust
and efficient numerical techniques},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {79},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-79},
doi = {10.1186/1752-0509-6-79},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/VilasBGBA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/VillaverdeEB12,
author = {Alejandro Fern{\'{a}}ndez Villaverde and
Jose A. Egea and
Julio R. Banga},
title = {A cooperative strategy for parameter estimation in large scale systems
biology models},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {75},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-75},
doi = {10.1186/1752-0509-6-75},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/VillaverdeEB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/VlaicSMMLMZGG12,
author = {Sebastian Vlaic and
Wolfgang Schmidt{-}Heck and
Madlen Matz{-}Soja and
Eugenia Marbach and
J{\"{o}}rg Linde and
Anke Meyer{-}Baese and
Sebastian Zellmer and
Reinhard Guthke and
Rolf Gebhardt},
title = {The extended {TILAR} approach: a novel tool for dynamic modeling of
the transcription factor network regulating the adaption to in vitro
cultivation of murine hepatocytes},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {147},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-147},
doi = {10.1186/1752-0509-6-147},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/VlaicSMMLMZGG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WaldherrH12,
author = {Steffen Waldherr and
Bernard Haasdonk},
title = {Efficient parametric analysis of the chemical master equation through
model order reduction},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {81},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-81},
doi = {10.1186/1752-0509-6-81},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WaldherrH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WangEP12,
author = {Yuliang Wang and
James A. Eddy and
Nathan D. Price},
title = {Reconstruction of genome-scale metabolic models for 126 human tissues
using mCADRE},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {153},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-153},
doi = {10.1186/1752-0509-6-153},
timestamp = {Thu, 03 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WangEP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WentzelBOJSOHE12,
author = {Alexander Wentzel and
Per Bruheim and
Anders {\O}verby and
{\O}yvind M. Jakobsen and
H{\aa}vard Sletta and
Walid A. M. Omara and
David A. Hodgson and
Trond E. Ellingsen},
title = {Optimized submerged batch fermentation strategy for systems scale
studies of metabolic switching in Streptomyces coelicolor {A3(2)}},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {59},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-59},
doi = {10.1186/1752-0509-6-59},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WentzelBOJSOHE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WidderSM12,
author = {Stefanie Widder and
Ricard V. Sol{\'{e}} and
Javier Mac{\'{\i}}a},
title = {Evolvability of feed-forward loop architecture biases its abundance
in transcription networks},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {7},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-7},
doi = {10.1186/1752-0509-6-7},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WidderSM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WilliamsonASS12,
author = {Thomas Williamson and
Delali A. Adiamah and
Jean{-}Marc Schwartz and
Lubomira Stateva},
title = {Exploring the genetic control of glycolytic oscillations in Saccharomyces
Cerevisiae},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {108},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-108},
doi = {10.1186/1752-0509-6-108},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WilliamsonASS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WoodC12,
author = {Kevin B. Wood and
Philippe Cluzel},
title = {Trade-offs between drug toxicity and benefit in the multi-antibiotic
resistance system underlie optimal growth of E. coli},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {48},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-48},
doi = {10.1186/1752-0509-6-48},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/WoodC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/XiaTRGD12,
author = {Tian Xia and
Jiansong Tong and
Shailendra S. Rathore and
Xun Gu and
Julie A. Dickerson},
title = {Network motif comparison rationalizes Sec1/Munc18-SNARE regulation
mechanism in exocytosis},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {19},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-19},
doi = {10.1186/1752-0509-6-19},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/XiaTRGD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YangW12,
author = {Tzu{-}Hsien Yang and
Wei{-}Sheng Wu},
title = {Identifying biologically interpretable transcription factor knockout
targets by jointly analyzing the transcription factor knockout microarray
and the ChIP-chip data},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {102},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-102},
doi = {10.1186/1752-0509-6-102},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YangW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YuTWMXLL12,
author = {Hui Yu and
Kang Tu and
Yi{-}Jie Wang and
Jun{-}Zhe Mao and
Lu Xie and
Yuan{-}Yuan Li and
Yi{-}Xue Li},
title = {Combinatorial network of transcriptional regulation and microRNA regulation
in human cancer},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {61},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-61},
doi = {10.1186/1752-0509-6-61},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/YuTWMXLL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Zabet12,
author = {Nicolae Radu Zabet},
title = {System size reduction in stochastic simulations of the facilitated
diffusion mechanism},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {121},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-121},
doi = {10.1186/1752-0509-6-121},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/Zabet12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangLN12,
author = {Lei Zhang and
Arthur D. Lander and
Qing Nie},
title = {A reaction-diffusion mechanism influences cell lineage progression
as a basis for formation, regeneration, and stability of intestinal
crypts},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {93},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-93},
doi = {10.1186/1752-0509-6-93},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangLN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ZhangSYW12,
title = {Predicting new molecular targets for rhein using network pharmacology},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {20},
year = {2012},
note = {Withdrawn.},
url = {https://doi.org/10.1186/1752-0509-6-20},
doi = {10.1186/1752-0509-6-20},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ZhangSYW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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