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@article{DBLP:journals/bmcbi/0003SG15,
author = {Paul M{\"{u}}ller and
Mirjam Sch{\"{u}}rmann and
Jochen R. Guck},
title = {ODTbrain: a Python library for full-view, dense diffraction tomography},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {367:1--367:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0764-0},
doi = {10.1186/S12859-015-0764-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/0003SG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AbbassN15,
author = {Jad Abbass and
Jean{-}Christophe Nebel},
title = {Customised fragments libraries for protein structure prediction based
on structural class annotations},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {136:1--136:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0576-2},
doi = {10.1186/S12859-015-0576-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AbbassN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Abu-JamousFRN15,
author = {Basel Abu{-}Jamous and
Rui Fa and
David Roberts and
Asoke K. Nandi},
title = {{UNCLES:} method for the identification of genes differentially consistently
co-expressed in a specific subset of datasets},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {184:1--184:19},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0614-0},
doi = {10.1186/S12859-015-0614-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Abu-JamousFRN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AflitosSSPJR15,
author = {Saulo Aflitos and
Edouard Severing and
Gabino Sanchez{-}Perez and
Sander Peters and
Hans de Jong and
Dick de Ridder},
title = {Cnidaria: fast, reference-free clustering of raw and assembled genome
and transcriptome {NGS} data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {352:1--352:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0806-7},
doi = {10.1186/S12859-015-0806-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AflitosSSPJR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AgostinhoMW15,
author = {Nilzair M. Barreto and
Karina S. Machado and
Adriano Velasque Werhli},
title = {Inference of regulatory networks with a convergence improved {MCMC}
sampler},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {306:1--306:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0734-6},
doi = {10.1186/S12859-015-0734-6},
timestamp = {Wed, 22 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AgostinhoMW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AhnV15,
author = {Soyeon Ahn and
Haris Vikalo},
title = {Joint haplotype assembly and genotype calling via sequential Monte
Carlo algorithm},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {223:1--223:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0651-8},
doi = {10.1186/S12859-015-0651-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AhnV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AiyetanTZZ15,
author = {Paul Aiyetan and
Stefani N. Thomas and
Zhen Zhang and
Hui Zhang},
title = {MRMPlus: an open source quality control and assessment tool for {SRM/MRM}
assay development},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {411:1--411:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0838-z},
doi = {10.1186/S12859-015-0838-Z},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AiyetanTZZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Al-ShatnawiAS15,
author = {Mufleh Al{-}Shatnawi and
M. Omair Ahmad and
M. N. S. Swamy},
title = {MSAIndelFR: a scheme for multiple protein sequence alignment using
information on indel flanking regions},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {393:1--393:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0826-3},
doi = {10.1186/S12859-015-0826-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Al-ShatnawiAS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AlQuraishiTX15,
author = {Mohammed AlQuraishi and
Shengdong Tang and
Xide Xia},
title = {An affinity-structure database of helix-turn-helix: {DNA} complexes
with a universal coordinate system},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {390:1--390:19},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0819-2},
doi = {10.1186/S12859-015-0819-2},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AlQuraishiTX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Albrecht15,
author = {Benjamin Albrecht},
title = {Computing all hybridization networks for multiple binary phylogenetic
input trees},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {236:1--236:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0660-7},
doi = {10.1186/S12859-015-0660-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Albrecht15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AllardRJC15,
author = {Guy Allard and
Feargal Ryan and
Ian B. Jeffery and
Marcus J. Claesson},
title = {{SPINGO:} a rapid species-classifier for microbial amplicon sequences},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {324:1--324:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0747-1},
doi = {10.1186/S12859-015-0747-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AllardRJC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AllenHCJ15,
author = {Julie M. Allen and
Daisie I. Huang and
Quentin C. Cronk and
Kevin P. Johnson},
title = {aTRAM - automated target restricted assembly method: a fast method
for assembling loci across divergent taxa from next-generation sequencing
data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {98:1--98:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0515-2},
doi = {10.1186/S12859-015-0515-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AllenHCJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AllendeSL15,
author = {Christian Allende and
Erik Sohn and
Cedric Little},
title = {Treelink: data integration, clustering and visualization of phylogenetic
trees},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {414:1--414:6},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0860-1},
doi = {10.1186/S12859-015-0860-1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AllendeSL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Angeles-Martinez15,
author = {Liliana Angeles{-}Martinez and
Constantinos Theodoropoulos},
title = {A Lattice-Boltzmann scheme for the simulation of diffusion in intracellular
crowded systems},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {353:1--353:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0769-8},
doi = {10.1186/S12859-015-0769-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Angeles-Martinez15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AngeliniHVY15,
author = {Claudia Angelini and
Ruth Heller and
Rita Volkinshtein and
Daniel Yekutieli},
title = {Is this the right normalization? {A} diagnostic tool for ChIP-seq
normalization},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {150:1--150:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0579-z},
doi = {10.1186/S12859-015-0579-Z},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AngeliniHVY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AnghelQHNDMB15,
author = {Catalina V. Anghel and
Gerald T. Quon and
Syed Haider and
Francis Nguyen and
Amit G. Deshwar and
Quaid Morris and
Paul C. Boutros},
title = {ISOpureR: an {R} implementation of a computational purification algorithm
of mixed tumour profiles},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {156:1--156:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0597-x},
doi = {10.1186/S12859-015-0597-X},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AnghelQHNDMB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AnjumMDIC15,
author = {Samreen Anjum and
Sandro Morganella and
Fulvio D'Angelo and
Antonio Iavarone and
Michele Ceccarelli},
title = {{VEGAWES:} variational segmentation on whole exome sequencing for
copy number detection},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {315:1--315:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0748-0},
doi = {10.1186/S12859-015-0748-0},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AnjumMDIC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArenasSMG15,
author = {Ailan F. Arenas and
Gladys E. Salcedo and
Andrey M. Montoya and
Jorge E. Gomez{-}Marin},
title = {{MSCA:} a spectral comparison algorithm between time series to identify
protein-protein interactions},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {152:1--152:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0599-8},
doi = {10.1186/S12859-015-0599-8},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ArenasSMG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArnulfoNCFP15,
author = {Gabriele Arnulfo and
Massimo Narizzano and
Francesco Cardinale and
Marco Fato and
Jaakko Palva},
title = {Automatic segmentation of deep intracerebral electrodes in computed
tomography scans},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {99:1--99:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0511-6},
doi = {10.1186/S12859-015-0511-6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ArnulfoNCFP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AsadulinaCWPJ15,
author = {Albina Asadulina and
Markus Conzelmann and
Elizabeth Williams and
Aurora Panzera and
G{\'{a}}sp{\'{a}}r J{\'{e}}kely},
title = {Object-based representation and analysis of light and electron microscopic
volume data using Blender},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {229:1--229:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0652-7},
doi = {10.1186/S12859-015-0652-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AsadulinaCWPJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Avila-HerreraP15,
author = {Aram Avila{-}Herrera and
Katherine S. Pollard},
title = {Coevolutionary analyses require phylogenetically deep alignments and
better null models to accurately detect inter-protein contacts within
and between species},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {268:1--268:18},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0677-y},
doi = {10.1186/S12859-015-0677-Y},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Avila-HerreraP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AyGK15,
author = {Ahmet Ay and
Dihong Gong and
Tamer Kahveci},
title = {Hierarchical decomposition of dynamically evolving regulatory networks},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {161:1--161:19},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0529-9},
doi = {10.1186/S12859-015-0529-9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AyGK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BadrH15,
author = {Eman Badr and
Lenwood S. Heath},
title = {CoSREM: a graph mining algorithm for the discovery of combinatorial
splicing regulatory elements},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {285:1--285:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0698-6},
doi = {10.1186/S12859-015-0698-6},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BadrH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BajcsyCCHJKMPSS15,
author = {Peter Bajcsy and
Antonio Cardone and
Joe Chalfoun and
Michael Halter and
Derek Juba and
Marcin Kociolek and
Michael Majurski and
Adele P. Peskin and
Carl G. Simon and
Mylene Simon and
Antoine Vandecreme and
Mary Brady},
title = {Survey statistics of automated segmentations applied to optical imaging
of mammalian cells},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {330:1--330:28},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0762-2},
doi = {10.1186/S12859-015-0762-2},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BajcsyCCHJKMPSS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BakerPSJ15,
author = {Syed Murtuza Baker and
C. Hart Poskar and
Falk Schreiber and
Bj{\"{o}}rn H. Junker},
title = {A unified framework for estimating parameters of kinetic biological
models},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {104:1--104:21},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0500-9},
doi = {10.1186/S12859-015-0500-9},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BakerPSJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BalazkiLEAK15,
author = {Pavel Balazki and
Klaus Lindauer and
Jens Einloft and
J{\"{o}}rg Ackermann and
Ina Koch},
title = {{MONALISA} for stochastic simulations of Petri net models of biochemical
systems},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {215:1--215:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0596-y},
doi = {10.1186/S12859-015-0596-Y},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BalazkiLEAK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BalazkiLEAK15a,
author = {Pavel Balazki and
Klaus Lindauer and
Jens Einloft and
J{\"{o}}rg Ackermann and
Ina Koch},
title = {Erratum to: {MONALISA} for stochastic simulations of Petri net models
of biochemical systems},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {371:1},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0725-7},
doi = {10.1186/S12859-015-0725-7},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BalazkiLEAK15a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BansalL15,
author = {Vikas Bansal and
Ondrej Libiger},
title = {Fast individual ancestry inference from {DNA} sequence data leveraging
allele frequencies for multiple populations},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {4:1--4:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0418-7},
doi = {10.1186/S12859-014-0418-7},
timestamp = {Fri, 09 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BansalL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BaronCGW15,
author = {Robert V. Baron and
Yvette P. Conley and
Michael B. Gorin and
Daniel E. Weeks},
title = {dbVOR: a database system for importing pedigree, phenotype and genotype
data and exporting selected subsets},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {91:1--91:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0505-4},
doi = {10.1186/S12859-015-0505-4},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BaronCGW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BayerlovaJKKBB15,
author = {Michaela Bayerlov{\'{a}} and
Klaus Jung and
Frank Kramer and
Florian Klemm and
Annalen Bleckmann and
Tim Bei{\ss}barth},
title = {Comparative study on gene set and pathway topology-based enrichment
methods},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {334:1--334:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0751-5},
doi = {10.1186/S12859-015-0751-5},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BayerlovaJKKBB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BeleanBAKB15,
author = {Bogdan Belean and
Monica Borda and
J{\"{o}}rg Ackermann and
Ina Koch and
Ovidiu Balacescu},
title = {Unsupervised image segmentation for microarray spots with irregular
contours and inner holes},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {412:1--412:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0842-3},
doi = {10.1186/S12859-015-0842-3},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BeleanBAKB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BellotOSOM15,
author = {Pau Bellot and
Catharina Olsen and
Philippe Salembier and
Albert Oliveras{-}Verg{\'{e}}s and
Patrick E. Meyer},
title = {NetBenchmark: a bioconductor package for reproducible benchmarks of
gene regulatory network inference},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {312:1--312:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0728-4},
doi = {10.1186/S12859-015-0728-4},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BellotOSOM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BenaventeCFMGCP15,
author = {Ernest D. Benavente and
Francesc Coll and
Nick Furnham and
Ruth McNerney and
Judith R. Glynn and
Susana G. Campino and
Arnab Pain and
Fady R. Mohareb and
Taane G. Clark},
title = {PhyTB: Phylogenetic tree visualisation and sample positioning for
M. tuberculosis},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {155:1--155:5},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0603-3},
doi = {10.1186/S12859-015-0603-3},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BenaventeCFMGCP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BenoitLLDDUR15,
author = {Ga{\"{e}}tan Benoit and
Claire Lemaitre and
Dominique Lavenier and
Erwan Drezen and
Thibault Dayris and
Raluca Uricaru and
Guillaume Rizk},
title = {Reference-free compression of high throughput sequencing data with
a probabilistic de Bruijn graph},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {288:1--288:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0709-7},
doi = {10.1186/S12859-015-0709-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BenoitLLDDUR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BernardJMVV15,
author = {Elsa Bernard and
Laurent Jacob and
Julien Mairal and
Eric Viara and
Jean{-}Philippe Vert},
title = {A convex formulation for joint {RNA} isoform detection and quantification
from multiple RNA-seq samples},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {262:1--262:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0695-9},
doi = {10.1186/S12859-015-0695-9},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BernardJMVV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BernardesVCZ15,
author = {Juliana S. Bernardes and
Fabio R. J. Vieira and
Lygia Costa and
Gerson Zaverucha},
title = {Evaluation and improvements of clustering algorithms for detecting
remote homologous protein families},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {34:1--34:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0445-4},
doi = {10.1186/S12859-014-0445-4},
timestamp = {Wed, 15 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BernardesVCZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BharH0W15,
author = {Anirban Bhar and
Martin Haubrock and
Anirban Mukhopadhyay and
Edgar Wingender},
title = {Multiobjective triclustering of time-series transcriptome data reveals
key genes of biological processes},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {200:1--200:19},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0635-8},
doi = {10.1186/S12859-015-0635-8},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BharH0W15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BinnsAVCT15,
author = {Michael Binns and
Pedro de Atauri and
Anestis Vlysidis and
Marta Cascante and
Constantinos Theodoropoulos},
title = {Sampling with poling-based flux balance analysis: optimal versus sub-optimal
flux space analysis of Actinobacillus succinogenes},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {49:1--49:19},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0476-5},
doi = {10.1186/S12859-015-0476-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BinnsAVCT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Bitard-FeildelK15,
author = {Tristan Bitard{-}Feildel and
Carsten Kemena and
Jenny M. Greenwood and
Erich Bornberg{-}Bauer},
title = {Domain similarity based orthology detection},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {154:1--154:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0570-8},
doi = {10.1186/S12859-015-0570-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Bitard-FeildelK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BlagusL15,
author = {Rok Blagus and
Lara Lusa},
title = {Boosting for high-dimensional two-class prediction},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {300:1--300:17},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0723-9},
doi = {10.1186/S12859-015-0723-9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BlagusL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BlagusL15a,
author = {Rok Blagus and
Lara Lusa},
title = {Joint use of over- and under-sampling techniques and cross-validation
for the development and assessment of prediction models},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {363:1--363:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0784-9},
doi = {10.1186/S12859-015-0784-9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BlagusL15a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Bloom15,
author = {Jesse D. Bloom},
title = {Software for the analysis and visualization of deep mutational scanning
data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {168:1--168:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0590-4},
doi = {10.1186/S12859-015-0590-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Bloom15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BohlerEILWKJE15,
author = {Anwesha Bohler and
Lars M. T. Eijssen and
Martijn P. van Iersel and
Christ Leemans and
Egon L. Willighagen and
Martina Kutmon and
Magali Jaillard and
Chris T. A. Evelo},
title = {Automatically visualise and analyse data on pathways using PathVisioRPC
from any programming environment},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {267:1--267:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0708-8},
doi = {10.1186/S12859-015-0708-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BohlerEILWKJE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BonfertKCZF15,
author = {Thomas Bonfert and
Evelyn Kirner and
Gergely Csaba and
Ralf Zimmer and
Caroline C. Friedel},
title = {ContextMap 2: fast and accurate context-based RNA-seq mapping},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {122:1--122:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0557-5},
doi = {10.1186/S12859-015-0557-5},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BonfertKCZF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BorghtTWCVRVA15,
author = {Koen Van der Borght and
Kim Thys and
Yves Wetzels and
Lieven Clement and
Bie M. P. Verbist and
Joke Reumers and
Herman van Vlijmen and
Jeroen Aerssens},
title = {{QQ-SNV:} single nucleotide variant detection at low frequency by
comparing the quality quantiles},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {379:1--379:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0812-9},
doi = {10.1186/S12859-015-0812-9},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BorghtTWCVRVA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BottomlyWM15,
author = {Daniel Bottomly and
Beth Wilmot and
Shannon K. McWeeney},
title = {plethy: management of whole body plethysmography data in {R}},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {134:1--134:5},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0547-7},
doi = {10.1186/S12859-015-0547-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BottomlyWM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BravoPQRF15,
author = {{\`{A}}lex Bravo and
Janet Pi{\~{n}}ero Gonz{\'{a}}lez and
N{\'{u}}ria Queralt{-}Rosinach and
Michael Rautschka and
Laura In{\'{e}}s Furlong},
title = {Extraction of relations between genes and diseases from text and large-scale
data analysis: implications for translational research},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {55:1--55:17},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0472-9},
doi = {10.1186/S12859-015-0472-9},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BravoPQRF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BrayC15,
author = {Mark{-}Anthony Bray and
Anne E. Carpenter},
title = {CellProfiler Tracer: exploring and validating high-throughput, time-lapse
microscopy image data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {369:1--369:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0759-x},
doi = {10.1186/S12859-015-0759-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BrayC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BroeckxCVBGDSDN15,
author = {Bart Broeckx and
Frank Coopman and
Geert Verhoeven and
Tim Bosmans and
Ingrid Gielen and
Walter Dingemanse and
Jimmy Saunders and
Dieter Deforce and
Filip Van Nieuwerburgh},
title = {An heuristic filtering tool to identify phenotype-associated genetic
variants applied to human intellectual disability and canine coat
colors},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {391:1--391:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0822-7},
doi = {10.1186/S12859-015-0822-7},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BroeckxCVBGDSDN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BroinSG15,
author = {Pilib {\'{O}} Broin and
Terry J. Smith and
Aaron Golden},
title = {Alignment-free clustering of transcription factor binding motifs using
a genetic-k-medoids approach},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {22:1--22:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0450-2},
doi = {10.1186/S12859-015-0450-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BroinSG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CallahanCD15,
author = {Alison Callahan and
Juan Cifuentes and
Michel Dumontier},
title = {An evidence-based approach to identify aging-related genes in Caenorhabditis
elegans},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {40:1--40:18},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0469-4},
doi = {10.1186/S12859-015-0469-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CallahanCD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CantorNSHTD15,
author = {Michael Cantor and
Henrik Nordberg and
Tatyana Smirnova and
Matthias Hess and
Susannah Tringe and
Inna Dubchak},
title = {Elviz - exploration of metagenome assemblies with an interactive visualization
tool},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {130:1--130:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0566-4},
doi = {10.1186/S12859-015-0566-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CantorNSHTD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CassioliBBMALNL15,
author = {Andrea Cassioli and
Benjamin Bardiaux and
Guillaume Bouvier and
Antonio Mucherino and
Rafael Alves and
Leo Liberti and
Michael Nilges and
Carlile Lavor and
Th{\'{e}}r{\`{e}}se E. Malliavin},
title = {An algorithm to enumerate all possible protein conformations verifying
a set of distance constraints},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {23:1--23:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0451-1},
doi = {10.1186/S12859-015-0451-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CassioliBBMALNL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CastruitaMBWG15,
author = {Jose Samaniego Castruita and
Marie Zepeda Mendoza and
Ross Barnett and
Nathan Wales and
Marcus Gilbert},
title = {Odintifier - {A} computational method for identifying insertions of
organellar origin from modern and ancient high-throughput sequencing
data based on haplotype phasing},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {232:1--232:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0682-1},
doi = {10.1186/S12859-015-0682-1},
timestamp = {Thu, 05 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CastruitaMBWG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CaudaiSZT15,
author = {Claudia Caudai and
Emanuele Salerno and
Monica Zopp{\`{e}} and
Anna Tonazzini},
title = {Inferring 3D chromatin structure using a multiscale approach based
on quaternions},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {234:1--234:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0667-0},
doi = {10.1186/S12859-015-0667-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CaudaiSZT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CechHS15,
author = {Petr Cech and
David Hoksza and
Daniel Svozil},
title = {MultiSETTER: web server for multiple {RNA} structure comparison},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {253:1--253:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0696-8},
doi = {10.1186/S12859-015-0696-8},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CechHS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChaeDK15,
author = {Minho Chae and
Charles G. Danko and
W. Kraus},
title = {groHMM: a computational tool for identifying unannotated and cell
type-specific transcription units from global run-on sequencing data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {222:1--222:16},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0656-3},
doi = {10.1186/S12859-015-0656-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChaeDK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenM15,
author = {Calvin R. Chen and
George I. Makhatadze},
title = {ProteinVolume: calculating molecular van der Waals and void volumes
in proteins},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {101:1--101:6},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0531-2},
doi = {10.1186/S12859-015-0531-2},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChengCZXS15,
author = {Xiaoping Cheng and
Hongmin Cai and
Yue Zhang and
Bo Xu and
Weifeng Su},
title = {Optimal combination of feature selection and classification via local
hyperplane based learning strategy},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {219:1--219:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0629-6},
doi = {10.1186/S12859-015-0629-6},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChengCZXS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChengJYXS15,
author = {Haoyu Cheng and
Huaipan Jiang and
Jiaoyun Yang and
Yun Xu and
Yi Shang},
title = {BitMapper: an efficient all-mapper based on bit-vector computing},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {192:1--192:16},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0626-9},
doi = {10.1186/S12859-015-0626-9},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChengJYXS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChengYZW15,
author = {Wei Cheng and
Shi Yu and
Xiang Zhang and
Wei Wang},
title = {Fast and robust group-wise eQTL mapping using sparse graphical models},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {2:1--2:16},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0421-z},
doi = {10.1186/S12859-014-0421-Z},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChengYZW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChengZB15,
author = {Shanshan Cheng and
Yang Zhang and
Charles L. Brooks III},
title = {PCalign: a method to quantify physicochemical similarity of protein-protein
interfaces},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {33:1--33:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0471-x},
doi = {10.1186/S12859-015-0471-X},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChengZB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChiangHCMPKCCFC15,
author = {Michael Chiang and
Sam Hallman and
Amanda Cinquin and
Nabora de Mochel and
Adrian Paz and
Shimako Kawauchi and
Anne L. Calof and
Ken Cho and
Charless C. Fowlkes and
Olivier Cinquin},
title = {Analysis of in vivo single cell behavior by high throughput, human-in-the-loop
segmentation of three-dimensional images},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {397:1--397:19},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0814-7},
doi = {10.1186/S12859-015-0814-7},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChiangHCMPKCCFC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChiuHYW15,
author = {Tai{-}Yu Chiu and
Ting{-}Chieh Hsu and
Chia{-}Cheng Yen and
Jia{-}Shung Wang},
title = {Interpolation based consensus clustering for gene expression time
series},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {117:1--117:17},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0541-0},
doi = {10.1186/S12859-015-0541-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChiuHYW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ComoglioSP15,
author = {Federico Comoglio and
Cem Sievers and
Renato Paro},
title = {Sensitive and highly resolved identification of RNA-protein interaction
sites in {PAR-CLIP} data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {32:1--32:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0470-y},
doi = {10.1186/S12859-015-0470-Y},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ComoglioSP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CremonaSVDPSR15,
author = {Marzia A. Cremona and
Laura M. Sangalli and
Simone Vantini and
Gaetano Dellino and
Pier Giuseppe Pelicci and
Piercesare Secchi and
Laura Riva},
title = {Peak shape clustering reveals biological insights},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {349:1--349:18},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0787-6},
doi = {10.1186/S12859-015-0787-6},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CremonaSVDPSR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DabrowskiDKKW15,
author = {Michal Dabrowski and
Norbert Dojer and
Izabella Krystkowiak and
Bozena Kaminska and
Bartek Wilczynski},
title = {Optimally choosing {PWM} motif databases and sequence scanning approaches
based on ChIP-seq data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {140:1--140:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0573-5},
doi = {10.1186/S12859-015-0573-5},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DabrowskiDKKW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DaltonLG15,
author = {James A. R. Dalton and
Isaias Lans and
Jes{\'{u}}s Giraldo},
title = {Quantifying conformational changes in GPCRs: glimpse of a common functional
mechanism},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {124:1--124:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0567-3},
doi = {10.1186/S12859-015-0567-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DaltonLG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DanielOWQVK15,
author = {Edward Daniel and
Goodluck Onwukwe and
Rik Wierenga and
Susan Quaggin and
Seppo Vainio and
Mirja Krause},
title = {ATGme: Open-source web application for rare codon identification and
custom {DNA} sequence optimization},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {303:1--303:6},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0743-5},
doi = {10.1186/S12859-015-0743-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DanielOWQVK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DehghannasiriYD15,
author = {Roozbeh Dehghannasiri and
Byung{-}Jun Yoon and
Edward R. Dougherty},
title = {Erratum to: Efficient experimental design for uncertainty reduction
in gene regulatory networks},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {410:1},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0839-y},
doi = {10.1186/S12859-015-0839-Y},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DehghannasiriYD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DehmanAN15,
author = {Alia Dehman and
Christophe Ambroise and
Pierre Neuvial},
title = {Performance of a blockwise approach in variable selection using linkage
disequilibrium information},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {148:1--148:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0556-6},
doi = {10.1186/S12859-015-0556-6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DehmanAN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DengHYJLLSLG15,
author = {Jizhong Deng and
Huasheng Huang and
Xiaoli Yu and
Ji Jin and
Weisen Lin and
Fagen Li and
Zhijiao Song and
Mei Li and
Siming Gan},
title = {DiSNPindel: improved intra-individual {SNP} and InDel detection in
direct amplicon sequencing of a diploid},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {343:1--343:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0790-y},
doi = {10.1186/S12859-015-0790-Y},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DengHYJLLSLG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DhanasekaranPGW15,
author = {A. Dhanasekaran and
Jon L. Pearson and
Balasubramanian Ganesan and
Bart C. Weimer},
title = {Metabolome searcher: a high throughput tool for metabolite identification
and metabolic pathway mapping directly from mass spectrometry and
using genome restriction},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {62:1--62:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0462-y},
doi = {10.1186/S12859-015-0462-Y},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DhanasekaranPGW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Diaz-Uriarte15,
author = {Ram{\'{o}}n D{\'{\i}}az{-}Uriarte},
title = {Identifying restrictions in the order of accumulation of mutations
during tumor progression: effects of passengers, evolutionary models,
and sampling},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {41:1--41:26},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0466-7},
doi = {10.1186/S12859-015-0466-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Diaz-Uriarte15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DibMAISS15,
author = {Linda Dib and
Xavier Meyer and
Panu Artimo and
Vassilios Ioannidis and
Heinz Stockinger and
Nicolas Salamin},
title = {Coev-web: a web platform designed to simulate and evaluate coevolving
positions along a phylogenetic tree},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {394:1--394:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0785-8},
doi = {10.1186/S12859-015-0785-8},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DibMAISS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DingCCS15,
author = {Xiao Ding and
Fudong Cheng and
Chang{-}Chang Cao and
Xiao Sun},
title = {DectICO: an alignment-free supervised metagenomic classification method
based on feature extraction and dynamic selection},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {323:1--323:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0753-3},
doi = {10.1186/S12859-015-0753-3},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DingCCS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DitzlerMLR15,
author = {Gregory Ditzler and
J. Calvin Morrison and
Yemin Lan and
Gail Rosen},
title = {Fizzy: feature subset selection for metagenomics},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {358:1--358:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0793-8},
doi = {10.1186/S12859-015-0793-8},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DitzlerMLR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DucheminDCGC15,
author = {Wandrille Duchemin and
Pierre{-}Yves Dupont and
Matthew A. Campbell and
Austen Ganley and
Murray P. Cox},
title = {HyLiTE: accurate and flexible analysis of gene expression in hybrid
and allopolyploid species},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {8:1--8:4},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0433-8},
doi = {10.1186/S12859-014-0433-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DucheminDCGC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Duforet-Frebourg15,
author = {Nicolas Duforet{-}Frebourg and
Lucie Gattepaille and
Michael G. B. Blum and
Mattias Jakobsson},
title = {HaploPOP: a software that improves population assignment by combining
markers into haplotypes},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {242:1--242:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0661-6},
doi = {10.1186/S12859-015-0661-6},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Duforet-Frebourg15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DutheilF15,
author = {Julien Y. Dutheil and
Emeric Figuet},
title = {Optimization of sequence alignments according to the number of sequences
vs. number of sites trade-off},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {190:1--190:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0619-8},
doi = {10.1186/S12859-015-0619-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DutheilF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Edwards15,
author = {David Edwards},
title = {Two molecular measures of relatedness based on haplotype sharing},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {383:1--383:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0802-y},
doi = {10.1186/S12859-015-0802-Y},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Edwards15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EggelingRMG15,
author = {Ralf Eggeling and
Teemu Roos and
Petri Myllym{\"{a}}ki and
Ivo Grosse},
title = {Inferring intra-motif dependencies of {DNA} binding sites from ChIP-seq
data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {375:1--375:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0797-4},
doi = {10.1186/S12859-015-0797-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/EggelingRMG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ElmasWS15,
author = {Abdulkadir Elmas and
Xiaodong Wang and
Michael S. Samoilov},
title = {Reconstruction of novel transcription factor regulons through inference
of their binding sites},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {299:1--299:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0685-y},
doi = {10.1186/S12859-015-0685-Y},
timestamp = {Thu, 25 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ElmasWS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ErnstSW15,
author = {Patrick Ernst and
Amy Siu and
Gerhard Weikum},
title = {KnowLife: a versatile approach for constructing a large knowledge
graph for biomedical sciences},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {157:1--157:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0549-5},
doi = {10.1186/S12859-015-0549-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ErnstSW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EsmaeiliDWAJ15,
author = {Afshin Esmaeili and
Timothy Davison and
Andrew Wu and
Joenel Alcantara and
Christian Jacob},
title = {{PROKARYO:} an illustrative and interactive computational model of
the lactose operon in the bacterium Escherichia coli},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {311:1--311:23},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0720-z},
doi = {10.1186/S12859-015-0720-Z},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/EsmaeiliDWAJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Esmaili-TaheriG15,
author = {Ali Esmaili{-}Taheri and
Mohammad Ganjtabesh},
title = {{ERD:} a fast and reliable tool for {RNA} design including constraints},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {20:1--20:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0444-5},
doi = {10.1186/S12859-014-0444-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Esmaili-TaheriG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EspadaPMWF15,
author = {Roc{\'{\i}}o Espada and
R. Gonzalo Parra and
Thierry Mora and
Aleksandra M. Walczak and
Diego U. Ferreiro},
title = {Capturing coevolutionary signals inrepeat proteins},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {207:1--207:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0648-3},
doi = {10.1186/S12859-015-0648-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/EspadaPMWF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Esquivel-Rodriguez15,
author = {Juan Esquivel{-}Rodr{\'{\i}}guez and
Yi Xiong and
Xusi Han and
Shuomeng Guang and
Charles Christoffer and
Daisuke Kihara},
title = {Navigating 3D electron microscopy maps with {EM-SURFER}},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {181:1--181:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0580-6},
doi = {10.1186/S12859-015-0580-6},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Esquivel-Rodriguez15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EvansL15,
author = {Teri Evans and
Matthew Loose},
title = {AlignWise: a tool for identifying protein-coding sequence and correcting
frame-shifts},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {376:1--376:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0813-8},
doi = {10.1186/S12859-015-0813-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/EvansL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EversHDME15,
author = {Maurits Evers and
Michael Huttner and
Anne Dueck and
Gunter Meister and
Julia C. Engelmann},
title = {miRA: adaptable novel miRNA identification in plants using small {RNA}
sequencing data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {370:1--370:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0798-3},
doi = {10.1186/S12859-015-0798-3},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/EversHDME15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EyndenFVM15,
author = {Jimmy Van den Eynden and
Ana Carolina Fierro and
Lieven P. C. Verbeke and
Kathleen Marchal},
title = {SomInaClust: detection of cancer genes based on somatic mutation patterns
of inactivation and clustering},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {125:1--125:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0555-7},
doi = {10.1186/S12859-015-0555-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/EyndenFVM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FarrantHPACG15,
author = {Gregory K. Farrant and
Mark Hoebeke and
Fr{\'{e}}d{\'{e}}ric Partensky and
Gwendoline Andres and
Erwan Le Corre and
Laurence Garczarek},
title = {WiseScaffolder: an algorithm for the semi-automatic scaffolding of
Next Generation Sequencing data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {281:1--281:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0705-y},
doi = {10.1186/S12859-015-0705-Y},
timestamp = {Fri, 19 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FarrantHPACG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FarrellG15,
author = {Damien Farrell and
Stephen V. Gordon},
title = {Epitopemap: a web application for integrated whole proteome epitope
prediction},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {221:1--221:6},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0659-0},
doi = {10.1186/S12859-015-0659-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FarrellG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FioriniRMR15,
author = {Nicolas Fiorini and
Sylvie Ranwez and
Jacky Montmain and
Vincent Ranwez},
title = {{USI:} a fast and accurate approach for conceptual document annotation},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {83:1--83:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0513-4},
doi = {10.1186/S12859-015-0513-4},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FioriniRMR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FlandroisPG15,
author = {Jean{-}Pierre Flandrois and
Guy Perri{\`{e}}re and
Manolo Gouy},
title = {leBIBI \({}^{\mbox{QBPP}}\) : a set of databases and a webtool for
automatic phylogenetic analysis of prokaryotic sequences},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {251:1--251:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0692-z},
doi = {10.1186/S12859-015-0692-Z},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FlandroisPG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FlassigMZRS15,
author = {Robert J. Flassig and
Iryna Migal and
Esther der Zalm and
Liisa K. Rihko{-}Struckmann and
Kai Sundmacher},
title = {Rational selection of experimental readout and intervention sites
for reducing uncertainties in computational model predictions},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {13:1--13:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0436-5},
doi = {10.1186/S12859-014-0436-5},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FlassigMZRS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Folch-FortunyVF15,
author = {Abel Folch{-}Fortuny and
Alejandro Fern{\'{a}}ndez Villaverde and
Alberto Ferrer and
Julio R. Banga},
title = {Enabling network inference methods to handle missing data and outliers},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {283:1--283:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0717-7},
doi = {10.1186/S12859-015-0717-7},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Folch-FortunyVF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FortinoAG15,
author = {Vittorio Fortino and
Harri Alenius and
Dario Greco},
title = {{BACA:} bubble chArt to compare annotations},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {37:1--37:5},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0477-4},
doi = {10.1186/S12859-015-0477-4},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FortinoAG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FossoSMAVDMNP15,
author = {Bruno Fosso and
Monica Santamaria and
Marinella Marzano and
Daniel Alonso{-}Alemany and
Gabriel Valiente and
Giacinto Donvito and
Alfonso Monaco and
Pasquale Notarangelo and
Graziano Pesole},
title = {BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic
AmpliconS},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {203:1--203:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0595-z},
doi = {10.1186/S12859-015-0595-Z},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FossoSMAVDMNP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FradesRA15,
author = {Itziar Frades and
Svante Resj{\"{o}} and
Erik Andreasson},
title = {Comparison of phosphorylation patterns across eukaryotes by discriminative
N-gram analysis},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {239:1--239:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0657-2},
doi = {10.1186/S12859-015-0657-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FradesRA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FratelloSFRTG15,
author = {Michele Fratello and
Angela Serra and
Vittorio Fortino and
Giancarlo Raiconi and
Roberto Tagliaferri and
Dario Greco},
title = {A multi-view genomic data simulator},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {151:1--151:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0577-1},
doi = {10.1186/S12859-015-0577-1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FratelloSFRTG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FreytagGSB15,
author = {Saskia Freytag and
Johann Gagnon{-}Bartsch and
Terence P. Speed and
Melanie Bahlo},
title = {Systematic noise degrades gene co-expression signals but can be corrected},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {309:1--309:17},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0745-3},
doi = {10.1186/S12859-015-0745-3},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FreytagGSB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FrostLM15,
author = {H. Robert Frost and
Zhigang Li and
Jason H. Moore},
title = {Spectral gene set enrichment {(SGSE)}},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {70:1--70:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0490-7},
doi = {10.1186/S12859-015-0490-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/FrostLM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GabettaLRRSB15,
author = {Matteo Gabetta and
Ivan Limongelli and
Ettore Rizzo and
Alberto Riva and
Daniele Segagni and
Riccardo Bellazzi},
title = {BigQ: a NoSQL based framework to handle genomic variants in i2b2},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {415:1--415:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0861-0},
doi = {10.1186/S12859-015-0861-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GabettaLRRSB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GadinHEF15,
author = {Jesper G{\aa}din and
Ferdinand van't Hooft and
Per Eriksson and
Lasse Folkersen},
title = {AllelicImbalance: an {R/} bioconductor package for detecting, managing,
and visualizing allele expression imbalance data from {RNA} sequencing},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {194:1--194:6},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0620-2},
doi = {10.1186/S12859-015-0620-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GadinHEF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GaliezC15,
author = {Clovis Galiez and
Fran{\c{c}}ois Coste},
title = {Amplitude spectrum distance: measuring the global shape divergence
of protein fragments},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {256:1--256:16},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0693-y},
doi = {10.1186/S12859-015-0693-Y},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GaliezC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GambardellaPMBM15,
author = {Gennaro Gambardella and
Ivana Peluso and
Sandro Montefusco and
Mukesh Bansal and
Diego L. Medina and
Neil D. Lawrence and
Diego di Bernardo},
title = {A reverse-engineering approach to dissect post-translational modulators
of transcription factor's activity from transcriptional data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {279:1--279:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0700-3},
doi = {10.1186/S12859-015-0700-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GambardellaPMBM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Gao15,
author = {Xiaoli Gao},
title = {Penalized weighted low-rank approximation for robust recovery of recurrent
copy number variations},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {407:1--407:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0835-2},
doi = {10.1186/S12859-015-0835-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Gao15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GasparT15,
author = {John M. Gaspar and
W. Kelley Thomas},
title = {FlowClus: efficiently filtering and denoising pyrosequenced amplicons},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {105:1--105:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0532-1},
doi = {10.1186/S12859-015-0532-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GasparT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GauvinLMLLVR15,
author = {H{\'{e}}lo{\"{\i}}se Gauvin and
Jean{-}Fran{\c{c}}ois Lefebvre and
Claudia Moreau and
Eve{-}Marie Lavoie and
Damian Labuda and
H{\'{e}}l{\`{e}}ne V{\'{e}}zina and
Marie{-}H{\'{e}}l{\`{e}}ne Roy{-}Gagnon},
title = {{GENLIB:} an {R} package for the analysis of genealogical data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {160:1--160:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0581-5},
doi = {10.1186/S12859-015-0581-5},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GauvinLMLLVR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GibbonsMCD15,
author = {Theodore Gibbons and
Stephen M. Mount and
Endymion Cooper and
Charles F. Delwiche},
title = {Evaluation of BLAST-based edge-weighting metrics used for homology
inference with the Markov Clustering algorithm},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {218:1--218:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0625-x},
doi = {10.1186/S12859-015-0625-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GibbonsMCD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GibbonsMCD15a,
author = {Theodore Gibbons and
Stephen M. Mount and
Endymion Cooper and
Charles F. Delwiche},
title = {Erratum to: Evaluation of BLAST-based edge-weighting metrics used
for homology inference with the Markov Clustering algorithm},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {274:1--274:2},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0690-1},
doi = {10.1186/S12859-015-0690-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GibbonsMCD15a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GilletteA15,
author = {Todd A. Gillette and
Giorgio A. Ascoli},
title = {Topological characterization of neuronal arbor morphology via sequence
representation: {I} - motif analysis},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {216:1--216:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0604-2},
doi = {10.1186/S12859-015-0604-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GilletteA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GilletteHA15,
author = {Todd A. Gillette and
Parsa Hosseini and
Giorgio A. Ascoli},
title = {Topological characterization of neuronal arbor morphology via sequence
representation: {II} - global alignment},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {209:1--209:17},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0605-1},
doi = {10.1186/S12859-015-0605-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GilletteHA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GingoldCSLLZFSL15,
author = {Julian Gingold and
Ed Coakley and
Jie Su and
Dung{-}Fang Lee and
Zerlina Lau and
Hongwei Zhou and
Dan Felsenfeld and
Christoph Schaniel and
Ihor Lemischka},
title = {Distribution Analyzer, a methodology for identifying and clustering
outlier conditions from single-cell distributions, and its application
to a Nanog reporter RNAi screen},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {225:1--225:20},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0636-7},
doi = {10.1186/S12859-015-0636-7},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GingoldCSLLZFSL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Girgis15,
author = {Hani Z. Girgis},
title = {Red: an intelligent, rapid, accurate tool for detecting repeats de-novo
on the genomic scale},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {227:1--227:19},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0654-5},
doi = {10.1186/S12859-015-0654-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Girgis15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GlassQSHY15,
author = {Kimberly Glass and
John Quackenbush and
Dimitrios Spentzos and
Benjamin Haibe{-}Kains and
Guo{-}Cheng Yuan},
title = {A network model for angiogenesis in ovarian cancer},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {115:1--115:17},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0551-y},
doi = {10.1186/S12859-015-0551-Y},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GlassQSHY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GohlkeORRDGP15,
author = {Bj{\"{o}}rn{-}Oliver Gohlke and
Tim Overkamp and
Anja Richter and
Antje Richter and
Peter T. Daniel and
Bernd Gillissen and
Robert Preissner},
title = {2D and 3D similarity landscape analysis identifies {PARP} as a novel
off-target for the drug Vatalanib},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {308:1--308:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0730-x},
doi = {10.1186/S12859-015-0730-X},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GohlkeORRDGP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GongKLG15,
author = {Wuming Gong and
Naoko Koyano{-}Nakagawa and
Tongbin Li and
Daniel J. Garry},
title = {Inferring dynamic gene regulatory networks in cardiac differentiation
through the integration of multi-dimensional data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {74:1--74:16},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0460-0},
doi = {10.1186/S12859-015-0460-0},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GongKLG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GreenerS15,
author = {Joe G. Greener and
Michael J. E. Sternberg},
title = {AlloPred: prediction of allosteric pockets on proteins using normal
mode perturbation analysis},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {335:1--335:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0771-1},
doi = {10.1186/S12859-015-0771-1},
timestamp = {Tue, 27 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GreenerS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GreenfeldMPMWGH15,
author = {Max Greenfeld and
Jan{-}Willem van de Meent and
Dmitri S. Pavlichin and
Hideo Mabuchi and
Chris H. Wiggins and
Ruben L. Gonzalez and
Daniel Herschlag},
title = {Single-molecule dataset {(SMD):} a generalized storage format for
raw and processed single-molecule data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {3:1--3:4},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0429-4},
doi = {10.1186/S12859-014-0429-4},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GreenfeldMPMWGH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Guevara-SouzaV15,
author = {Mauricio Guevara{-}Souza and
Edgar E. Vallejo},
title = {A computer simulation model of Wolbachia invasion for disease vector
population modification},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {317:1--317:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0746-2},
doi = {10.1186/S12859-015-0746-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Guevara-SouzaV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GutierrezMBTMG15,
author = {Andres H. Guti{\'{e}}rrez and
William D. Martin and
Chris Bailey{-}Kellogg and
Frances Terry and
Leonard Moise and
Anne S. De Groot},
title = {Development and validation of an epitope prediction tool for swine
(PigMatrix) based on the pocket profile method},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {290:1--290:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0724-8},
doi = {10.1186/S12859-015-0724-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GutierrezMBTMG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HallBHPBKSABHB15,
author = {Jacob B. Hall and
Jessica Cooke Bailey and
Joshua Hoffman and
Margaret A. Pericak{-}Vance and
William K. Scott and
Jaclyn Kovach and
Stephen G. Schwartz and
Anita Agarwal and
Milam Brantley and
Jonathan L. Haines and
William S. Bush},
title = {Estimating cumulative pathway effects on risk for age-related macular
degeneration using mixed linear models},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {329:1--329:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0760-4},
doi = {10.1186/S12859-015-0760-4},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HallBHPBKSABHB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Harigua-SouiaiC15,
author = {Emna Harigua{-}Souiai and
Isidro Cortes{-}Ciriano and
Nathan Desdouits and
Th{\'{e}}r{\`{e}}se E. Malliavin and
Ikram Guizani and
Michael Nilges and
Arnaud Blondel and
Guillaume Bouvier},
title = {Identification of binding sites and favorable ligand binding moieties
by virtual screening and self-organizing map analysis},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {93:1--93:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0518-z},
doi = {10.1186/S12859-015-0518-Z},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Harigua-SouiaiC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HartleyM15,
author = {Stephen Hartley and
James C. Mullikin},
title = {QoRTs: a comprehensive toolset for quality control and data processing
of RNA-Seq experiments},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {224:1--224:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0670-5},
doi = {10.1186/S12859-015-0670-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HartleyM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HasanK15,
author = {Md Mahmudul Hasan and
Tamer Kahveci},
title = {Indexing a protein-protein interaction network expedites network alignment},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {326:1--326:17},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0756-0},
doi = {10.1186/S12859-015-0756-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HasanK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HeberleMSTM15,
author = {Henry Heberle and
Gabriela Meirelles and
Felipe R. da Silva and
Guilherme P. Telles and
Rosane Minghim},
title = {InteractiVenn: a web-based tool for the analysis of sets through Venn
diagrams},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {169:1--169:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0611-3},
doi = {10.1186/S12859-015-0611-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HeberleMSTM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HeinigCTRSPHVJ15,
author = {Matthias Heinig and
Maria Colom{\'{e}}{-}Tatch{\'{e}} and
Aaron Taudt and
Carola Rintisch and
Sebastian Schafer and
Michal Pravenec and
Norbert H{\"{u}}bner and
Martin Vingron and
Frank Johannes},
title = {histoneHMM: Differential analysis of histone modifications with broad
genomic footprints},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {60:1--60:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0491-6},
doi = {10.1186/S12859-015-0491-6},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HeinigCTRSPHVJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HellicarRSH15,
author = {Andrew D. Hellicar and
Ashfaqur Rahman and
Daniel V. Smith and
John M. Henshall},
title = {Machine learning approach for pooled {DNA} sample calibration},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {214:1--214:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0593-1},
doi = {10.1186/S12859-015-0593-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HellicarRSH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HerasDMPLTZ15,
author = {J{\'{o}}nathan Heras and
C{\'{e}}sar Dom{\'{\i}}nguez and
Eloy J. Mata and
Vico Pascual and
Carmen Lozano and
Carmen Torres and
Myriam Zarazaga},
title = {GelJ - a tool for analyzing {DNA} fingerprint gel images},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {270:1--270:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0703-0},
doi = {10.1186/S12859-015-0703-0},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HerasDMPLTZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HermanNLSMH15,
author = {Joseph L. Herman and
{\'{A}}d{\'{a}}m Nov{\'{a}}k and
Rune B. Lyngs{\o} and
Adrienn Szab{\'{o}} and
Istv{\'{a}}n Mikl{\'{o}}s and
Jotun Hein},
title = {Efficient representation of uncertainty in multiple sequence alignments
using directed acyclic graphs},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {108:1--108:26},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0516-1},
doi = {10.1186/S12859-015-0516-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HermanNLSMH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Hernandez-Ferrer15,
author = {Carles Hernandez{-}Ferrer and
Ines Quintela Garcia and
Katharina Danielski and
{\'{A}}ngel Carracedo and
Luis A. P{\'{e}}rez{-}Jurado and
Juan R. Gonz{\'{a}}lez},
title = {affy2svaffy2sv: an {R} package to pre-process Affymetrix CytoScan
{HD} and 750K arrays for SNP, CNV, inversion and mosaicism calling},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {167:1--167:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0608-y},
doi = {10.1186/S12859-015-0608-Y},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Hernandez-Ferrer15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HertenHVH15,
author = {Koen Herten and
Matthew S. Hestand and
Joris Robert Vermeesch and
Jeroen K. J. Van Houdt},
title = {{GBSX:} a toolkit for experimental design and demultiplexing genotyping
by sequencing experiments},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {73:1--73:6},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0514-3},
doi = {10.1186/S12859-015-0514-3},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HertenHVH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HigashiFGGS15,
author = {Susan Higashi and
Cyril Fournier and
Christian Gautier and
Christine Gaspin and
Marie{-}France Sagot},
title = {Mirinho: An efficient and general plant and animal pre-miRNA predictor
for genomic and deep sequencing data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {179:1--179:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0594-0},
doi = {10.1186/S12859-015-0594-0},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HigashiFGGS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Hijas-ListeBEBL15,
author = {Gundi{\'{a}}n M. de Hijas{-}Liste and
Eva Balsa{-}Canto and
Jan Ewald and
Martin Bartl and
Pu Li and
Julio R. Banga and
Christoph Kaleta},
title = {Optimal programs of pathway control: dissecting the influence of pathway
topology and feedback inhibition on pathway regulation},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {163:1--163:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0587-z},
doi = {10.1186/S12859-015-0587-Z},
timestamp = {Mon, 12 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Hijas-ListeBEBL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HillB15,
author = {Bill Hill and
Richard A. Baldock},
title = {Constrained distance transforms for spatial atlas registration},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {90:1--90:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0504-5},
doi = {10.1186/S12859-015-0504-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HillB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HocumBMABRKMT15,
author = {Jonah Hocum and
Logan Battrell and
Ryan Maynard and
Jennifer E. Adair and
Brian Beard and
David Rawlings and
Hans{-}Peter Kiem and
Daniel G. Miller and
Grant Trobridge},
title = {{VISA} - Vector Integration Site Analysis server: a web-based server
to rapidly identify retroviral integration sites from next-generation
sequencing},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {212:1--212:5},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0653-6},
doi = {10.1186/S12859-015-0653-6},
timestamp = {Tue, 09 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HocumBMABRKMT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HoehndorfSSG15,
author = {Robert Hoehndorf and
Luke T. Slater and
Paul N. Schofield and
Georgios V. Gkoutos},
title = {Aber-OWL: a framework for ontology-based data access in biology},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {26:1--26:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0456-9},
doi = {10.1186/S12859-015-0456-9},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HoehndorfSSG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HofnerBG15,
author = {Benjamin Hofner and
Luigi Boccuto and
Markus G{\"{o}}ker},
title = {Controlling false discoveries in high-dimensional situations: boosting
with stability selection},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {144:1--144:17},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0575-3},
doi = {10.1186/S12859-015-0575-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HofnerBG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HolecKZ15,
author = {Matej Holec and
Ondrej Kuzelka and
Filip Zelezn{\'{y}}},
title = {Novel gene sets improve set-level classification of prokaryotic gene
expression data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {348:1--348:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0786-7},
doi = {10.1186/S12859-015-0786-7},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HolecKZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HollMZP15,
author = {Sonja Holl and
Yassene Mohammed and
Olav Zimmermann and
Magnus Palmblad},
title = {Scientific workflow optimization for improved peptide and protein
identification},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {284:1--284:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0714-x},
doi = {10.1186/S12859-015-0714-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HollMZP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HouDHHF15,
author = {Qingzhen Hou and
Bas E. Dutilh and
Martijn A. Huynen and
Jaap Heringa and
K. Anton Feenstra},
title = {Sequence specificity between interacting and non-interacting homologs
identifies interface residues - a homodimer and monomer use case},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {325:1--325:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0758-y},
doi = {10.1186/S12859-015-0758-Y},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HouDHHF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HousemanKWM15,
author = {Eugene Andres Houseman and
Karl T. Kelsey and
John K. Wiencke and
Carmen J. Marsit},
title = {Cell-composition effects in the analysis of {DNA} methylation array
data: a mathematical perspective},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {95:1--95:16},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0527-y},
doi = {10.1186/S12859-015-0527-Y},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HousemanKWM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HristovskiDKR15,
author = {Dimitar Hristovski and
Dejan Dinevski and
Andrej Kastrin and
Thomas C. Rindflesch},
title = {Biomedical question answering using semantic relations},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {6:1--6:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0365-3},
doi = {10.1186/S12859-014-0365-3},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HristovskiDKR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuC15,
author = {Lun Hu and
Keith C. C. Chan},
title = {A density-based clustering approach for identifying overlapping protein
complexes with functional preferences},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {174:1--174:16},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0583-3},
doi = {10.1186/S12859-015-0583-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuTL15,
author = {Ke Hu and
Angela Ting and
Jing Li},
title = {{BSPAT:} a fast online tool for {DNA} methylation co-occurrence pattern
analysis based on high-throughput bisulfite sequencing data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {220:1--220:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0649-2},
doi = {10.1186/S12859-015-0649-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuTL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuangCCLLCCWSHS15,
author = {Hui{-}Wen Huang and
Yao{-}Shen Chen and
Jeff Chen and
Po{-}Liang Lu and
Yung{-}Cheng Lin and
Bao{-}Chen Chen and
Li{-}Chiu Chou and
Chu{-}Feng Wang and
Hui{-}Ju Su and
Yi{-}Chien Huang and
Yong{-}Ying Shi and
Hsiu{-}Lin Chen and
Bintou Sanno{-}Duanda and
Tsi{-}Shu Huang and
Kuei{-}Hsiang Lin and
Yu{-}Chang Tyan and
Pei{-}Yu Chu},
title = {Phylodynamic reconstruction of the spatiotemporal transmission and
demographic history of coxsackievirus {B2}},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {302:1--302:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0738-2},
doi = {10.1186/S12859-015-0738-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuangCCLLCCWSHS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuangFGCRBE15,
author = {Hongtai Huang and
Andrea Fava and
Tara Guhr and
Raffaello Cimbro and
Antony Rosen and
Francesco Boin and
Hugh Ellis},
title = {A methodology for exploring biomarker - phenotype associations: application
to flow cytometry data and systemic sclerosis clinical manifestations},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {293:1--293:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0722-x},
doi = {10.1186/S12859-015-0722-X},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HuangFGCRBE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuangMCCE15,
author = {Fengqiong Huang and
James A. Macklin and
Hong Cui and
Heather A. Cole and
Lorena Endara},
title = {{OTO:} Ontology Term Organizer},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {47:1--47:18},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0488-1},
doi = {10.1186/S12859-015-0488-1},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HuangMCCE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuangMH15,
author = {Howard Huang and
James C. Mullikin and
Nancy F. Hansen},
title = {Evaluation of variant detection software for pooled next-generation
sequence data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {235:1--235:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0624-y},
doi = {10.1186/S12859-015-0624-Y},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuangMH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuangOXHMLSRUD15,
author = {Fei Huang and
Christopher J. Oldfield and
Bin Xue and
Wei{-}Lun Hsu and
Jingwei Meng and
Xiaowen Liu and
Li Shen and
Pedro Romero and
Vladimir N. Uversky and
A. Keith Dunker},
title = {Erratum to: Improving protein order-disorder classification using
charge-hydropathy plots},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {241:1--241:2},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0646-5},
doi = {10.1186/S12859-015-0646-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuangOXHMLSRUD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuangWSHCCLCH15,
author = {Hui{-}Ling Huang and
Yu{-}Chung Wu and
Li{-}Jen Su and
Yun{-}Ju Huang and
Phasit Charoenkwan and
Wen{-}Liang Chen and
Hua{-}Chin Lee and
William C. Chu and
Shinn{-}Ying Ho},
title = {Discovery of prognostic biomarkers for predicting lung cancer metastasis
using microarray and survival data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {54:1--54:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0463-x},
doi = {10.1186/S12859-015-0463-X},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HuangWSHCCLCH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuoLGYLR15,
author = {Tong Huo and
Wei Liu and
Yu Guo and
Cheng Yang and
Jianping Lin and
Zihe Rao},
title = {Prediction of host - pathogen protein interactions between Mycobacterium
tuberculosis and Homo sapiens using sequence motifs},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {100:1--100:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0535-y},
doi = {10.1186/S12859-015-0535-Y},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuoLGYLR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/IhnatovaB15,
author = {Ivana Ihnatova and
Eva Budinska},
title = {ToPASeq: an {R} package for topology-based pathway analysis of microarray
and RNA-Seq data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {350:1--350:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0763-1},
doi = {10.1186/S12859-015-0763-1},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/IhnatovaB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/InmanRCRKIL15,
author = {Keith Inman and
Norah Rudin and
Ken Cheng and
Chris Robinson and
Adam Kirschner and
Luke Inman{-}Semerau and
Kirk E. Lohmueller},
title = {Lab Retriever: a software tool for calculating likelihood ratios incorporating
a probability of drop-out for forensic {DNA} profiles},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {298:1--298:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0740-8},
doi = {10.1186/S12859-015-0740-8},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/InmanRCRKIL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/IslamSKB15,
author = {S. M. Ashiqul Islam and
Tanvir Sajed and
Christopher Kearney and
Erich J. Baker},
title = {PredSTP: a highly accurate {SVM} based model to predict sequential
cystine stabilized peptides},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {210:1--210:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0633-x},
doi = {10.1186/S12859-015-0633-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/IslamSKB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JacquinCGA15,
author = {Laval Jacquin and
Tuong{-}Vi Cao and
C{\'{e}}cile Grenier and
Nourollah Ahmadi},
title = {{DHOEM:} a statistical simulation software for simulating new markers
in real {SNP} marker data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {404:1--404:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0830-7},
doi = {10.1186/S12859-015-0830-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JacquinCGA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JafariMS15,
author = {Mohieddin Jafari and
Mehdi Mirzaie and
Mehdi Sadeghi},
title = {Interlog protein network: an evolutionary benchmark of protein interaction
networks for the evaluation of clustering algorithms},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {319:1--319:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0755-1},
doi = {10.1186/S12859-015-0755-1},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/JafariMS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JaffeHKWCMLC15,
author = {Andrew E. Jaffe and
Thomas Hyde and
Joel Kleinman and
Daniel Weinbergern and
Joshua Chenoweth and
Ronald McKay and
Jeffrey T. Leek and
Carlo Colantuoni},
title = {Practical impacts of genomic data "cleaning" on biological discovery
using surrogate variable analysis},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {372:1--372:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0808-5},
doi = {10.1186/S12859-015-0808-5},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/JaffeHKWCMLC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JanssenG15,
author = {Stefan Janssen and
Robert Giegerich},
title = {Ambivalent covariance models},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {178:1--178:17},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0569-1},
doi = {10.1186/S12859-015-0569-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JanssenG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JayaveluAB15,
author = {Naresh Doni Jayavelu and
Lasse Aasgaard and
Nadav S. Bar},
title = {Iterative sub-network component analysis enables reconstruction of
large scale genetic networks},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {366:1--366:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0768-9},
doi = {10.1186/S12859-015-0768-9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JayaveluAB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JeanquartierJH15,
author = {Fleur Jeanquartier and
Claire Jean{-}Quartier and
Andreas Holzinger},
title = {Integrated web visualizations for protein-protein interaction databases},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {195:1--195:16},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0615-z},
doi = {10.1186/S12859-015-0615-Z},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JeanquartierJH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JehlSH15,
author = {Peter Jehl and
Fabian Sievers and
Desmond G. Higgins},
title = {OD-seq: outlier detection in multiple sequence alignments},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {269:1--269:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0702-1},
doi = {10.1186/S12859-015-0702-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JehlSH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JiaGYXTMMCLL15,
author = {Cheng Jia and
Weihua Guan and
Amy Yang and
Rui Xiao and
W. Tang and
Christine Moravec and
Kenneth Margulies and
Thomas P. Cappola and
Mingyao Li and
Chun Li},
title = {MetaDiff: differential isoform expression analysis using random-effects
meta-regression},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {208:1--208:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0623-z},
doi = {10.1186/S12859-015-0623-Z},
timestamp = {Tue, 28 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/JiaGYXTMMCLL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JiangCHLV15,
author = {Chuan Jiang and
Chao Chen and
Ziyue Huang and
Renyi Liu and
Jerome Verdier},
title = {ITIS, a bioinformatics tool for accurate identification of transposon
insertion sites using next-generation sequencing data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {72:1--72:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0507-2},
doi = {10.1186/S12859-015-0507-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JiangCHLV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JinAZKPR15,
author = {Xian Jin and
Mahendra Awale and
Micha{\"{e}}l Zasso and
Daniel Kostro and
Luc Patiny and
Jean{-}Louis Reymond},
title = {PDB-Explorer: a web-based interactive map of the protein data bank
in shape space},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {339:1--339:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0776-9},
doi = {10.1186/S12859-015-0776-9},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JinAZKPR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JohnsonZFKK15,
author = {Nicholas Johnson and
Huanan Zhang and
Gang Fang and
Vipin Kumar and
Rui Kuang},
title = {SubPatCNV: approximate subspace pattern mining for mapping copy-number
variations},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {16:1--16:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0426-7},
doi = {10.1186/S12859-014-0426-7},
timestamp = {Fri, 29 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/JohnsonZFKK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Julvez15,
author = {Jorge J{\'{u}}lvez},
title = {A straightforward method to compute average stochastic oscillations
from data samples},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {333:1--333:17},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0765-z},
doi = {10.1186/S12859-015-0765-Z},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Julvez15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KaraVSWF15,
author = {Altan Kara and
Martin J. Vickers and
Martin T. Swain and
David E. Whitworth and
Narcis Fernandez{-}Fuentes},
title = {Genome-wide prediction of prokaryotic two-component system networks
using a sequence-based meta-predictor},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {297:1--297:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0741-7},
doi = {10.1186/S12859-015-0741-7},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KaraVSWF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KarainQ15,
author = {Wael Karain and
Nael Qaraeen},
title = {Weighted protein residue networks based on joint recurrences between
residues},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {173:1--173:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0621-1},
doi = {10.1186/S12859-015-0621-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KarainQ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KaramichalisKKK15,
author = {Rallis Karamichalis and
Lila Kari and
Stavros Konstantinidis and
Steffen Kopecki},
title = {An investigation into inter- and intragenomic variations of graphic
genomic signatures},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {246:1--246:22},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0655-4},
doi = {10.1186/S12859-015-0655-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KaramichalisKKK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KarrGCBIKC15,
author = {Jonathan R. Karr and
Harendra Guturu and
Edward Y. Chen and
Stuart L. Blair and
Jonathan M. Irish and
Nikesh Kotecha and
Markus W. Covert},
title = {NetworkPainter: dynamic intracellular pathway animation in Cytobank},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {172:1--172:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0602-4},
doi = {10.1186/S12859-015-0602-4},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KarrGCBIKC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KartasaloPORLAK15,
author = {Kimmo Kartasalo and
Risto{-}Pekka P{\"{o}}l{\"{o}}nen and
Marisa Ojala and
Jyrki Rasku and
Jukka Lekkala and
Katriina Aalto{-}Set{\"{a}}l{\"{a}} and
Pasi Kallio},
title = {CytoSpectre: a tool for spectral analysis of oriented structures on
cellular and subcellular levels},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {344:1--344:23},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0782-y},
doi = {10.1186/S12859-015-0782-Y},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KartasaloPORLAK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KatoRNHTKO15,
author = {Tsuyoshi Kato and
Raissa Relator and
Hayliang Ngouv and
Yoshihiro Hirohashi and
Osamu Takaki and
Tetsuhiro Kakimoto and
Kinya Okada},
title = {Segmental {HOG:} new descriptor for glomerulus detection in kidney
microscopy image},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {316:1--316:16},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0739-1},
doi = {10.1186/S12859-015-0739-1},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KatoRNHTKO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KemenaFB15,
author = {Carsten Kemena and
Tristan Feildel and
Erich Bornberg{-}Bauer},
title = {{MDAT-} Aligning multiple domain arrangements},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {19:1--19:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0442-7},
doi = {10.1186/S12859-014-0442-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KemenaFB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KhuranaRST15,
author = {Jay Khurana and
Jay Reeder and
Antony Shrimpton and
Juilee Thakar},
title = {{GESPA:} classifying nsSNPs to predict disease association},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {228:1--228:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0673-2},
doi = {10.1186/S12859-015-0673-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KhuranaRST15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KhuriW15,
author = {Sawsan Khuri and
Stefan Wuchty},
title = {Essentiality and centrality in protein interaction networks revisited},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {109:1--109:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0536-x},
doi = {10.1186/S12859-015-0536-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KhuriW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KilianskiCYRSDF15,
author = {Andy Kilianski and
Patrick Carcel and
Shijie Yao and
Pierce Roth and
Josh Schulte and
Greg B. Donarum and
Ed T. Fochler and
Jessica M. Hill and
Alvin T. Liem and
Michael R. Wiley and
Jason T. Ladner and
Bradley P. Pfeffer and
Oliver Elliot and
Alexandra Petrosov and
Dereje D. Jima and
Tyghe G. Vallard and
Melanie C. Melendrez and
Evan Skowronski and
Phenix{-}Lan Quan and
W. Ian Lipkin and
Henry S. Gibbons and
David L. Hirschberg and
Gustavo F. Palacios and
C. Nicole Rosenzweig},
title = {Pathosphere.org: pathogen detection and characterization through a
web-based, open source informatics platform},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {416:1--416:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0840-5},
doi = {10.1186/S12859-015-0840-5},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KilianskiCYRSDF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimH15,
author = {Dong Seon Kim and
Yoonsoo Hahn},
title = {The acquisition of novel N-glycosylation sites in conserved proteins
during human evolution},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {29:1--29:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0468-5},
doi = {10.1186/S12859-015-0468-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimLW15,
author = {Sun Kim and
Zhiyong Lu and
W. John Wilbur},
title = {Identifying named entities from PubMed{\textregistered}; for enriching
semantic categories},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {57:1--57:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0487-2},
doi = {10.1186/S12859-015-0487-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimLW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimNSJAMK15,
author = {Sa Kim and
Tuong Nguyen and
Na Seo and
Seunghup Jung and
Hyun An and
David A. Mills and
Jae Kim},
title = {Comparative proteomics: assessment of biological variability and dataset
comparability},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {121:1--121:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0561-9},
doi = {10.1186/S12859-015-0561-9},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimNSJAMK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KirysRSTKV15,
author = {Tatsiana Kirys and
Anatoly M. Ruvinsky and
Deepak Singla and
Alexander V. Tuzikov and
Petras J. Kundrotas and
Ilya A. Vakser},
title = {Simulated unbound structures for benchmarking of protein docking in
the Dockground resource},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {243:1--243:6},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0672-3},
doi = {10.1186/S12859-015-0672-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KirysRSTKV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KishorePLMBAEP15,
author = {Kamal Kishore and
Stefano de Pretis and
Ryan Lister and
Marco J. Morelli and
Valerio Bianchi and
Bruno Amati and
Joseph R. Ecker and
Mattia Pelizzola},
title = {methylPipe and compEpiTools: a suite of {R} packages for the integrative
analysis of epigenomics data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {313:1--313:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0742-6},
doi = {10.1186/S12859-015-0742-6},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KishorePLMBAEP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KleinkaufHBM15,
author = {Robert Kleinkauf and
Torsten Houwaart and
Rolf Backofen and
Martin Mann},
title = {antaRNA - Multi-objective inverse folding of pseudoknot {RNA} using
ant-colony optimization},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {389:1--389:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0815-6},
doi = {10.1186/S12859-015-0815-6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KleinkaufHBM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KlodtHTC15,
author = {Maria Klodt and
Katja Herzog and
Reinhard T{\"{o}}pfer and
Daniel Cremers},
title = {Field phenotyping of grapevine growth using dense stereo reconstruction},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {143:1--143:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0560-x},
doi = {10.1186/S12859-015-0560-X},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KlodtHTC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KonigCGAV15,
author = {Caroline K{\"{o}}nig and
Martha Iv{\'{o}}n C{\'{a}}rdenas and
Jes{\'{u}}s Giraldo and
Ren{\'{e}} Alqu{\'{e}}zar and
Alfredo Vellido},
title = {Label noise in subtype discrimination of class {C} {G} protein-coupled
receptors: {A} systematic approach to the analysis of classification
errors},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {314:1--314:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0731-9},
doi = {10.1186/S12859-015-0731-9},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KonigCGAV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KordjamshidiRM15,
author = {Parisa Kordjamshidi and
Dan Roth and
Marie{-}Francine Moens},
title = {Structured learning for spatial information extraction from biomedical
text: bacteria biotopes},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {129:1--129:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0542-z},
doi = {10.1186/S12859-015-0542-Z},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KordjamshidiRM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KorirGS15,
author = {Paul K. Korir and
Paul Geeleher and
Cathal Seoighe},
title = {Seq-ing improved gene expression estimates from microarrays using
machine learning},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {286:1--286:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0712-z},
doi = {10.1186/S12859-015-0712-Z},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KorirGS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KozmaT15,
author = {D{\'{a}}niel Kozma and
G{\'{a}}bor E. Tusn{\'{a}}dy},
title = {TMFoldRec: a statistical potential-based transmembrane protein fold
recognition tool},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {201:1--201:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0638-5},
doi = {10.1186/S12859-015-0638-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KozmaT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KrachtS15,
author = {David Kracht and
Steffen Schober},
title = {Insertion and deletion correcting {DNA} barcodes based on watermarks},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {50:1--50:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0482-7},
doi = {10.1186/S12859-015-0482-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KrachtS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KristensenSFK15,
author = {David M. Kristensen and
Usman Saeed and
Dmitrij Frishman and
Eugene V. Koonin},
title = {A census of {\(\alpha\)}-helical membrane proteins in double-stranded
{DNA} viruses infecting bacteria and archaea},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {380:1--380:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0817-4},
doi = {10.1186/S12859-015-0817-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KristensenSFK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KuhringDPNR15,
author = {Mathias Kuhring and
Piotr Wojtek Dabrowski and
Vitor Piro and
Andreas Nitsche and
Bernhard Y. Renard},
title = {SuRankCo: supervised ranking of contigs in de novo assemblies},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {240:1--240:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0644-7},
doi = {10.1186/S12859-015-0644-7},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KuhringDPNR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KulikSEK15,
author = {Natallia Kulik and
Krist{\'{y}}na Sl{\'{a}}mov{\'{a}} and
R{\"{u}}diger Ettrich and
Vladim{\'{\i}}r Kren},
title = {Computational study of {\(\beta\)}-N-acetylhexosaminidase from Talaromyces
flavus, a glycosidase with high substrate flexibility},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {28:1--28:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0465-8},
doi = {10.1186/S12859-015-0465-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KulikSEK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KurcQWWTCNLSF15,
author = {Tahsin M. Kur{\c{c}} and
Xin Qi and
Daihou Wang and
Fusheng Wang and
George Teodoro and
Lee A. D. Cooper and
Michael Nalisnik and
Lin Yang and
Joel H. Saltz and
David J. Foran},
title = {Scalable analysis of Big pathology image data cohorts using efficient
methods and high-performance computing strategies},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {399:1--399:21},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0831-6},
doi = {10.1186/S12859-015-0831-6},
timestamp = {Fri, 10 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KurcQWWTCNLSF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KushwahaMMHA15,
author = {Sandeep K. Kushwaha and
Lokeshwaran Manoharan and
Tejashwari Meerupati and
Katarina Hedlund and
Dag G. Ahr{\'{e}}n},
title = {MetCap: a bioinformatics probe design pipeline for large-scale targeted
metagenomics},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {65:1--65:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0501-8},
doi = {10.1186/S12859-015-0501-8},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KushwahaMMHA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LacourSDHJLMNRV15,
author = {Andr{\'{e}} Lacour and
Vitalia Sch{\"{u}}ller and
Dmitriy Drichel and
Christine Herold and
Frank Jessen and
Markus Leber and
Wolfgang Maier and
Markus M. N{\"{o}}then and
Alfredo Ramirez and
Tatsiana Vaitsiakhovich and
Tim Becker},
title = {Novel genetic matching methods for handling population stratification
in genome-wide association studies},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {84:1--84:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0521-4},
doi = {10.1186/S12859-015-0521-4},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LacourSDHJLMNRV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LaiWWDZ15,
author = {Binbin Lai and
Fumeng Wang and
Xiaoqi Wang and
Liping Duan and
Huaiqiu Zhu},
title = {InteMAP: Integrated metagenomic assembly pipeline for {NGS} short
reads},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {244:1--244:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0686-x},
doi = {10.1186/S12859-015-0686-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LaiWWDZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LaimerHFWL15,
author = {Josef Laimer and
Heidi Hofer and
Marko Fritz and
Stefan Wegenkittl and
Peter Lackner},
title = {{MAESTRO} - multi agent stability prediction upon point mutations},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {116:1--116:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0548-6},
doi = {10.1186/S12859-015-0548-6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LaimerHFWL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LandoniMCTAAMD15,
author = {Elena Landoni and
Rosalba Miceli and
Maurizio Callari and
Paola Tiberio and
Valentina Appierto and
Valentina Angeloni and
Luigi Mariani and
Maria Daidone},
title = {Proposal of supervised data analysis strategy of plasma miRNAs from
hybridisation array data with an application to assess hemolysis-related
deregulation},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {388:1--388:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0820-9},
doi = {10.1186/S12859-015-0820-9},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LandoniMCTAAMD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LangUEKBS15,
author = {Stefan Lang and
Amol Ugale and
Eva Erlandsson and
G{\"{o}}ran Karlsson and
David Bryder and
Shamit Soneji},
title = {SCExV: a webtool for the analysis and visualisation of single cell
qRT-PCR data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {320:1--320:4},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0757-z},
doi = {10.1186/S12859-015-0757-Z},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LangUEKBS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LapytskoKISS15,
author = {Anastasiya Lapytsko and
Gabriel Kollarovic and
Lyubomira Ivanova and
Maja Studencka and
J{\"{o}}rg Schaber},
title = {FoCo: a simple and robust quantification algorithm of nuclear foci},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {392:1--392:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0816-5},
doi = {10.1186/S12859-015-0816-5},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LapytskoKISS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LarsonO15,
author = {Jessica L. Larson and
Art B. Owen},
title = {Moment based gene set tests},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {132:1--132:17},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0571-7},
doi = {10.1186/S12859-015-0571-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LarsonO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Lassmann15,
author = {Timo Lassmann},
title = {TagDust2: a generic method to extract reads from sequencing data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {24:1--24:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0454-y},
doi = {10.1186/S12859-015-0454-Y},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Lassmann15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeeD15,
author = {Preston V. Lee and
Valentin Dinu},
title = {BitTorious volunteer: server-side extensions for centrally-managed
volunteer storage in BitTorrent swarms},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {364:1--364:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0779-6},
doi = {10.1186/S12859-015-0779-6},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LeeD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeeKAGL15,
author = {Yugyung Lee and
Alok Khemka and
Gayathri Acharya and
Namita Giri and
Chi Lee},
title = {A cascade computer model for mocrobicide diffusivity from mucoadhesive
formulations},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {263:1--263:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0684-z},
doi = {10.1186/S12859-015-0684-Z},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LeeKAGL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeeLJJBL15,
author = {Juyong Lee and
Kiho Lee and
InSuk Joung and
Keehyoung Joo and
Bernard R. Brooks and
Jooyoung Lee},
title = {Sigma-RF: prediction of the variability of spatial restraints in template-based
modeling by random forest},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {94:1--94:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0526-z},
doi = {10.1186/S12859-015-0526-Z},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LeeLJJBL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeeSALP15,
author = {Soohyun Lee and
Chae Hwa Seo and
Burak Han Alver and
Sanghyuk Lee and
Peter J. Park},
title = {{EMSAR:} estimation of transcript abundance from RNA-seq data by mappability-based
segmentation and reclustering},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {278:1--278:16},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0704-z},
doi = {10.1186/S12859-015-0704-Z},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LeeSALP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LenaDMM15,
author = {Pietro di Lena and
Giacomo Domeniconi and
Luciano Margara and
Gianluca Moro},
title = {{GOTA:} {GO} term annotation of biomedical literature},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {346:1--346:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0777-8},
doi = {10.1186/S12859-015-0777-8},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LenaDMM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LevyCKFB15,
author = {Roie Levy and
Rogan Carr and
Anat Kreimer and
Shiri Freilich and
Elhanan Borenstein},
title = {NetCooperate: a network-based tool for inferring host-microbe and
microbe-microbe cooperation},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {164:1--164:6},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0588-y},
doi = {10.1186/S12859-015-0588-Y},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LevyCKFB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiCC15,
author = {Jilong Li and
Renzhi Cao and
Jianlin Cheng},
title = {A large-scale conformation sampling and evaluation server for protein
tertiary structure prediction and its assessment in {CASP11}},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {337:1--337:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0775-x},
doi = {10.1186/S12859-015-0775-X},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiCC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiPSR15,
author = {Peipei Li and
Yongjun Piao and
Ho Shon and
Keun Ho Ryu},
title = {Comparing the normalization methods for the differential analysis
of Illumina high-throughput RNA-Seq data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {347:1--347:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0778-7},
doi = {10.1186/S12859-015-0778-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiPSR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiXPD15,
author = {Dongmei Li and
Zidian Xie and
Marc A. Le Pape and
Timothy D. Dye},
title = {An evaluation of statistical methods for {DNA} methylation microarray
data analysis},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {217:1--217:20},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0641-x},
doi = {10.1186/S12859-015-0641-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiXPD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiZ15,
author = {Gengxin Li and
Hongyu Zhao},
title = {M\({}^{\mbox{3}}\)-S: a genotype calling method incorporating information
from samples with known genotypes},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {403:1--403:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0824-5},
doi = {10.1186/S12859-015-0824-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiberalLLP15,
author = {Rodrigo Liberal and
Beata K. Lisowska and
David J. Leak and
John W. Pinney},
title = {PathwayBooster: a tool to support the curation of metabolic pathways},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {86:1--86:6},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0447-2},
doi = {10.1186/S12859-014-0447-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiberalLLP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LibisellerDKGEM15,
author = {Gunnar Libiseller and
Michaela Dvorzak and
Ulrike Kleb and
Edgar Gander and
Tobias Eisenberg and
Frank Madeo and
Steffen Neumann and
Gert Trausinger and
Frank Sinner and
Thomas R. Pieber and
Christoph Magnes},
title = {{IPO:} a tool for automated optimization of {XCMS} parameters},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {118:1--118:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0562-8},
doi = {10.1186/S12859-015-0562-8},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LibisellerDKGEM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LichtensteinAB15,
author = {Flavio Lichtenstein and
Fernando Antoneli and
Marcelo R. S. Briones},
title = {{MIA:} Mutual Information Analyzer, a graphic user interface program
that calculates entropy, vertical and horizontal mutual information
of molecular sequence sets},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {409:1--409:19},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0837-0},
doi = {10.1186/S12859-015-0837-0},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LichtensteinAB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LimongelliMB15,
author = {Ivan Limongelli and
Simone Marini and
Riccardo Bellazzi},
title = {PaPI: pseudo amino acid composition to score human protein-coding
variants},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {123:1--123:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0554-8},
doi = {10.1186/S12859-015-0554-8},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LimongelliMB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LinFWB15,
author = {Peijie Lin and
Sylvain For{\^{e}}t and
Susan R. Wilson and
Conrad J. Burden},
title = {Estimation of the methylation pattern distribution from deep sequencing
data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {145:1--145:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0600-6},
doi = {10.1186/S12859-015-0600-6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LinFWB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuCRMEP15,
author = {Yang Liu and
Francesca Chiaromonte and
Howard Ross and
Raunaq Malhotra and
Daniel Elleder and
Mary Poss},
title = {Error correction and statistical analyses for intra-host comparisons
of feline immunodeficiency virus diversity from high-throughput sequencing
data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {202:1--202:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0607-z},
doi = {10.1186/S12859-015-0607-Z},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuCRMEP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuSCZ15,
author = {Xuejun Liu and
Xinxin Shi and
Chunlin Chen and
Li Zhang},
title = {Improving RNA-Seq expression estimation by modeling isoform- and exon-specific
read sequencing rate},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {332:1--332:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0750-6},
doi = {10.1186/S12859-015-0750-6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuSCZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuWZ15,
author = {Mingming Liu and
Layne T. Watson and
Liqing Zhang},
title = {HMMvar-func: a new method for predicting the functional outcome of
genetic variants},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {351:1--351:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0781-z},
doi = {10.1186/S12859-015-0781-Z},
timestamp = {Fri, 20 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuWZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LivingstonBBH15,
author = {Kevin M. Livingston and
Michael Bada and
William A. Baumgartner Jr. and
Lawrence E. Hunter},
title = {KaBOB: ontology-based semantic integration of biomedical databases},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {126:1--126:21},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0559-3},
doi = {10.1186/S12859-015-0559-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LivingstonBBH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LoKNOCEAZ15,
author = {Yancy Lo and
Hyun Min Kang and
Matthew R. Nelson and
Mohammad I. Othman and
Stephanie L. Chissoe and
Margaret G. Ehm and
Gon{\c{c}}alo R. Abecasis and
Sebastian Z{\"{o}}llner},
title = {Comparing variant calling algorithms for target-exon sequencing in
a large sample},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {75:1--75:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0489-0},
doi = {10.1186/S12859-015-0489-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LoKNOCEAZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LoWLL15,
author = {Leung{-}Yau Lo and
Man{-}Leung Wong and
Kin{-}Hong Lee and
Kwong{-}Sak Leung},
title = {High-order dynamic Bayesian Network learning with hidden common causes
for causal gene regulatory network},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {395:1--395:28},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0823-6},
doi = {10.1186/S12859-015-0823-6},
timestamp = {Thu, 01 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LoWLL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LopesO15,
author = {Pedro Lopes and
Jos{\'{e}} Lu{\'{\i}}s Oliveira},
title = {An automated real-time integration and interoperability framework
for bioinformatics},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {328:1--328:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0761-3},
doi = {10.1186/S12859-015-0761-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LopesO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Lopez-Fernandez15,
author = {Hugo L{\'{o}}pez{-}Fern{\'{a}}ndez and
Hugo Miguel Santos and
Jos{\'{e}} L. Capelo and
Florentino Fdez{-}Riverola and
Daniel Glez{-}Pe{\~{n}}a and
Miguel Reboiro{-}Jato},
title = {Mass-Up: an all-in-one open software application for {MALDI-TOF} mass
spectrometry knowledge discovery},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {318:1--318:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0752-4},
doi = {10.1186/S12859-015-0752-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Lopez-Fernandez15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LordDM15,
author = {Etienne Lord and
Abdoulaye Banir{\'{e}} Diallo and
Vladimir Makarenkov},
title = {Classification of bioinformatics workflows using weighted versions
of partitioning and hierarchical clustering algorithms},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {68:1--68:19},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0508-1},
doi = {10.1186/S12859-015-0508-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LordDM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LourencoWG15,
author = {Jos{\'{e}} Louren{\c{c}}o and
Paul S. Wikramaratna and
Sunetra Gupta},
title = {{MANTIS:} an {R} package that simulates multilocus models of pathogen
evolution},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {176:1--176:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0598-9},
doi = {10.1186/S12859-015-0598-9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LourencoWG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LozuponeK15,
author = {Catherine A. Lozupone and
Rob Knight},
title = {The unifrac significance test is sensitive to tree topology},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {211:1--211:3},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0640-y},
doi = {10.1186/S12859-015-0640-Y},
timestamp = {Sun, 28 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LozuponeK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LuiTCWSY15,
author = {Thomas Lui and
Nancy Tsui and
Lawrence Wing{-}Chi Chan and
Cesar Wong and
Parco Siu and
Benjamin Y. M. Yung},
title = {{DECODE:} an integrated differential co-expression and differential
expression analysis of gene expression data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {182:1--182:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0582-4},
doi = {10.1186/S12859-015-0582-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LuiTCWSY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LunS15,
author = {Aaron T. L. Lun and
Gordon K. Smyth},
title = {diffHic: a Bioconductor package to detect differential genomic interactions
in Hi-C data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {258:1--258:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0683-0},
doi = {10.1186/S12859-015-0683-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LunS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LuoSWC15,
author = {Gongning Luo and
Dong Sui and
Kuanquan Wang and
Jinseok Chae},
title = {Neuron anatomy structure reconstruction based on a sliding filter},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {342:1--342:19},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0780-0},
doi = {10.1186/S12859-015-0780-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LuoSWC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MaENA15,
author = {Xiaoyan Ma and
Daphne Ezer and
Carmen Navarro and
Boris Adryan},
title = {Reliable scaling of position weight matrices for binding strength
comparisons between transcription factors},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {265:1--265:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0666-1},
doi = {10.1186/S12859-015-0666-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MaENA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MaQLHWWL15,
author = {Lingnan Ma and
Maochun Qin and
Biao Liu and
Qiang Hu and
Lei Wei and
Jianmin Wang and
Song Liu},
title = {cnvCurator: an interactive visualization and editing tool for somatic
copy number variations},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {331:1--331:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0766-y},
doi = {10.1186/S12859-015-0766-Y},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MaQLHWWL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MaWHYWL15,
author = {Lichun Ma and
Debby Dan Wang and
Yiqing Huang and
Hong Yan and
Maria P. Wong and
Victor C. S. Lee},
title = {{EGFR} Mutant Structural Database: computationally predicted 3D structures
and the corresponding binding free energies with gefitinib and erlotinib},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {85:1--85:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0522-3},
doi = {10.1186/S12859-015-0522-3},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MaWHYWL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Machado15,
author = {Denis Machado},
title = {YBYR{\'{A}} facilitates comparison of large phylogenetic trees},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {204:1--204:4},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0642-9},
doi = {10.1186/S12859-015-0642-9},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Machado15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MachnickaKDB15,
author = {Magdalena A. Machnicka and
Katarzyna H. Kaminska and
Stanislaw Dunin{-}Horkawicz and
Janusz M. Bujnicki},
title = {Phylogenomics and sequence-structure-function relationships in the
GmrSD family of Type {IV} restriction enzymes},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {336:1--336:16},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0773-z},
doi = {10.1186/S12859-015-0773-Z},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MachnickaKDB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MalhotraMS15,
author = {Sony Malhotra and
Oommen K. Mathew and
Ramanathan Sowdhamini},
title = {{DOCKSCORE:} a webserver for ranking protein-protein docked poses},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {127:1--127:6},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0572-6},
doi = {10.1186/S12859-015-0572-6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MalhotraMS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ManzourolajdadA15,
author = {Amirhossein Manzourolajdad and
Jonathan P. Arnold},
title = {Secondary structural entropy in {RNA} switch (Riboswitch) identification},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {133:1--133:77},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0523-2},
doi = {10.1186/S12859-015-0523-2},
timestamp = {Wed, 20 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ManzourolajdadA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MaoMLCZX15,
author = {Xizeng Mao and
Qin Ma and
Bingqiang Liu and
Xin Chen and
Hanyuan Zhang and
Ying Xu},
title = {Revisiting operons: an analysis of the landscape of transcriptional
units in E. coli},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {356:1--356:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0805-8},
doi = {10.1186/S12859-015-0805-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MaoMLCZX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MarinierBM15,
author = {Eric Marinier and
Daniel G. Brown and
Brendan J. McConkey},
title = {Pollux: platform independent error correction of single and mixed
genomes},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {10:1--10:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0435-6},
doi = {10.1186/S12859-014-0435-6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MarinierBM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MartinYTB15,
author = {Tiphaine C. Martin and
Idil Yet and
Pei{-}Chien Tsai and
Jordana T. Bell},
title = {coMET: visualisation of regional epigenome-wide association scan results
and {DNA} co-methylation patterns},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {131:1--131:5},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0568-2},
doi = {10.1186/S12859-015-0568-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MartinYTB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MasoodSCN15,
author = {Talha Bin Masood and
Sankaran Sandhya and
Nagasuma R. Chandra and
Vijay Natarajan},
title = {{CHEXVIS:} a tool for molecular channel extraction and visualization},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {119:1--119:19},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0545-9},
doi = {10.1186/S12859-015-0545-9},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MasoodSCN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MathewSMAPSF15,
author = {Biena Mathew and
Alexander Schmitz and
Silvia Mu{\~{n}}oz{-}Descalzo and
Nariman Ansari and
Francesco Pampaloni and
Ernst H. K. Stelzer and
Sabine Christine Fischer},
title = {Robust and automated three-dimensional segmentation of densely packed
cell nuclei in different biological specimens with Lines-of-Sight
decomposition},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {187:1--187:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0617-x},
doi = {10.1186/S12859-015-0617-X},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MathewSMAPSF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MaynouPMP15,
author = {Joan Maynou and
Erola Pairo and
Santiago Marco and
Alexandre Perera},
title = {Sequence information gain based motif analysis},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {377:1--377:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0811-x},
doi = {10.1186/S12859-015-0811-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MaynouPMP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MbandiHHC15,
author = {Stanley Mbandi and
Uljana Hesse and
Peter van Heusden and
Alan Christoffels},
title = {Inferring bona fide transfrags in RNA-Seq derived-transcriptome assemblies
of non-model organisms},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {58:1--58:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0492-5},
doi = {10.1186/S12859-015-0492-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MbandiHHC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MeckbachTHWWG15,
author = {Cornelia Meckbach and
Rebecca Tacke and
Xu Hua and
Stephan Waack and
Edgar Wingender and
Mehmet G{\"{u}}ltas},
title = {PC-TraFF: identification of potentially collaborating transcription
factors using pointwise mutual information},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {400:1--400:21},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0827-2},
doi = {10.1186/S12859-015-0827-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MeckbachTHWWG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MeedsCLCLW15,
author = {Edward Meeds and
Michael Chiang and
Mary Lee and
Olivier Cinquin and
John S. Lowengrub and
Max Welling},
title = {{POPE:} post optimization posterior evaluation of likelihood free
models},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {264:1--264:20},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0658-1},
doi = {10.1186/S12859-015-0658-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MeedsCLCLW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MeiZ15,
author = {Suyu Mei and
Hao Zhu},
title = {Multi-label multi-instance transfer learning for simultaneous reconstruction
and cross-talk modeling of multiple human signaling pathways},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {417:1--417:18},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0841-4},
doi = {10.1186/S12859-015-0841-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MeiZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Mejia-RoaTSGTP15,
author = {Edgardo Mej{\'{\i}}a{-}Roa and
Daniel Tabas{-}Madrid and
Javier Setoain and
Carlos Garc{\'{\i}}a and
Francisco Tirado and
Alberto D. Pascual{-}Montano},
title = {NMF-mGPU: non-negative matrix factorization on multi-GPU systems},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {43:1--43:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0485-4},
doi = {10.1186/S12859-015-0485-4},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Mejia-RoaTSGTP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MengLL15,
author = {Jun Meng and
Dong Liu and
Yushi Luan},
title = {Inferring plant microRNA functional similarity using a weighted protein-protein
interaction network},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {361:1--361:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0789-4},
doi = {10.1186/S12859-015-0789-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MengLL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MichalovovaKHVK15,
author = {Monika Michalovova and
Zdenek Kubat and
Roman Hobza and
Boris Vyskot and
Eduard Kejnovsk{\'{y}}},
title = {Fully automated pipeline for detection of sex linked genes using RNA-Seq
data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {78:1--78:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0509-0},
doi = {10.1186/S12859-015-0509-0},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MichalovovaKHVK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MocioiuOOJSLAJ15,
author = {Victor Mocioiu and
Sandra Ortega{-}Martorell and
Iv{\'{a}}n Olier and
Michal Jablonski and
Jana Starcukov{\'{a}} and
Paulo Lisboa and
Carles Ar{\'{u}}s and
Margarida Juli{\`{a}}{-}Sap{\'{e}}},
title = {From raw data to data-analysis for magnetic resonance spectroscopy
- the missing link: jMRUI2XML},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {378:1--378:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0796-5},
doi = {10.1186/S12859-015-0796-5},
timestamp = {Tue, 02 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MocioiuOOJSLAJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ModoloL15,
author = {Laurent Modolo and
Emmanuelle Lerat},
title = {UrQt: an efficient software for the Unsupervised Quality trimming
of {NGS} data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {137:1--137:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0546-8},
doi = {10.1186/S12859-015-0546-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ModoloL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MonatTKFOARAOSS15,
author = {C{\'{e}}cile Monat and
Christine Tranchant{-}Dubreuil and
Ayit{\'{e}} Kougbeadjo and
C{\'{e}}dric Farcy and
Enrique Ortega{-}Abboud and
Souhila Amanzougarene and
S{\'{e}}bastien Ravel and
Mawuss{\'{e}} Agbessi and
Julie Orjuela{-}Bouniol and
Marilyne Summo and
Fran{\c{c}}ois Sabot},
title = {{TOGGLE:} toolbox for generic {NGS} analyses},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {374:1--374:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0795-6},
doi = {10.1186/S12859-015-0795-6},
timestamp = {Wed, 29 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MonatTKFOARAOSS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MoonrinSRCMTC15,
author = {Ninnutt Moonrin and
Napat Songtawee and
Siriluk Rattanabunyong and
Surasuk Chunsrivirot and
Wanwimon Mokmak and
Sissades Tongsima and
Kiattawee Choowongkomon},
title = {Understanding the molecular basis of {EGFR} kinase domain/MIG-6 peptide
recognition complex using computational analyses},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {103:1--103:16},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0528-x},
doi = {10.1186/S12859-015-0528-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MoonrinSRCMTC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MorenoBHMTDDTGH15,
author = {Pablo A. Moreno and
Stephan Beisken and
Bhavana Harsha and
Venkatesh Muthukrishnan and
Ilinca Tudose and
Adriano Dekker and
Stefanie Dornfeldt and
Franziska Taruttis and
Ivo Grosse and
Janna Hastings and
Steffen Neumann and
Christoph Steinbeck},
title = {BiNChE: {A} web tool and library for chemical enrichment analysis
based on the ChEBI ontology},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {56:1--56:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0486-3},
doi = {10.1186/S12859-015-0486-3},
timestamp = {Wed, 24 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MorenoBHMTDDTGH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MortonFLF15,
author = {James T. Morton and
Stefan D. Freed and
Shaun W. Lee and
Iddo Friedberg},
title = {A large scale prediction of bacteriocin gene blocks suggests a wide
functional spectrum for bacteriocins},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {381:1--381:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0792-9},
doi = {10.1186/S12859-015-0792-9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MortonFLF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MysaraLRM15,
author = {Mohamed Mysara and
Natalie Leys and
Jeroen Raes and
Pieter Monsieurs},
title = {NoDe: a fast error-correction algorithm for pyrosequencing amplicon
reads},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {88:1--88:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0520-5},
doi = {10.1186/S12859-015-0520-5},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MysaraLRM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NandalVBJRKSM15,
author = {Umesh K. Nandal and
Wytze J. Vlietstra and
Carsten Byrman and
Rienk E. Jeeninga and
Jeffrey H. Ringrose and
Antoine H. C. van Kampen and
Dave Speijer and
Perry D. Moerland},
title = {Candidate prioritization for low-abundant differentially expressed
proteins in 2D-DIGE datasets},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {25:1--25:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0455-x},
doi = {10.1186/S12859-015-0455-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NandalVBJRKSM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NatarajanPKYGA15,
author = {Padmaja Natarajan and
Marco Punta and
Abhinav Kumar and
Andrew P. Yeh and
Adam Godzik and
L. Aravind},
title = {Structure and sequence analyses of Bacteroides proteins BVU{\_}4064
and {BF1687} reveal presence of two novel predominantly-beta domains,
predicted to be involved in lipid and cell surface interactions},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {7:1--7:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0434-7},
doi = {10.1186/S12859-014-0434-7},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/NatarajanPKYGA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NazarovPKZBSCLM15,
author = {Vadim Nazarov and
Mikhail Pogorelyy and
Ekaterina Komech and
Ivan Zvyagin and
Dmitry Bolotin and
Mikhail Shugay and
Dmitry Chudakov and
Yuri B. Lebedev and
Ilgar Z. Mamedov},
title = {tcR: an {R} package for {T} cell receptor repertoire advanced data
analysis},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {175:1--175:5},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0613-1},
doi = {10.1186/S12859-015-0613-1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/NazarovPKZBSCLM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NdhlovuHD15,
author = {Andrew Ndhlovu and
Scott Hazelhurst and
Pierre M. Durand},
title = {Robust sequence alignment using evolutionary rates coupled with an
amino acid substitution matrix},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {255:1--255:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0688-8},
doi = {10.1186/S12859-015-0688-8},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/NdhlovuHD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NettlingTGKPG15,
author = {Martin Nettling and
Hendrik Treutler and
Jan Grau and
Jens Keilwagen and
Stefan Posch and
Ivo Grosse},
title = {DiffLogo: a comparative visualization of sequence motifs},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {387:1--387:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0767-x},
doi = {10.1186/S12859-015-0767-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NettlingTGKPG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Newell15,
author = {Nicholas E. Newell},
title = {Mapping side chain interactions at protein helix termini},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {231:1--231:21},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0671-4},
doi = {10.1186/S12859-015-0671-4},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Newell15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NgocHK15,
author = {Bui Thang Ngoc and
Tu Bao Ho and
Tatsuo Kanda},
title = {A semi-supervised tensor regression model for siRNA efficacy prediction},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {80:1--80:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0495-2},
doi = {10.1186/S12859-015-0495-2},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NgocHK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NguyenMTCT15,
author = {Nhung T. H. Nguyen and
Makoto Miwa and
Yoshimasa Tsuruoka and
Takashi Chikayama and
Satoshi Tojo},
title = {Wide-coverage relation extraction from {MEDLINE} using deep syntax},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {107:1--107:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0538-8},
doi = {10.1186/S12859-015-0538-8},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/NguyenMTCT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NimFCRKB15,
author = {Hieu T. Nim and
Milena B. Furtado and
Mauro W. Costa and
Nadia A. Rosenthal and
Hiroaki Kitano and
Sarah E. Boyd},
title = {{VISIONET:} intuitive visualisation of overlapping transcription factor
networks, with applications in cardiogenic gene discovery},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {141:1--141:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0578-0},
doi = {10.1186/S12859-015-0578-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NimFCRKB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NoviantiJRE15,
author = {Putri W. Novianti and
Victor L. Jong and
Kit C. B. Roes and
Marinus J. C. Eijkemans},
title = {Factors affecting the accuracy of a class prediction model in gene
expression data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {199:1--199:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0610-4},
doi = {10.1186/S12859-015-0610-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NoviantiJRE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NowotnyAXOCHTCC15,
author = {Jackson Nowotny and
Sharif Ahmed and
Lingfei Xu and
Oluwatosin Oluwadare and
Hannah Chen and
Noelan Hensley and
Tuan Trieu and
Renzhi Cao and
Jianlin Cheng},
title = {Iterative reconstruction of three-dimensional models of human chromosomes
from chromosomal contact data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {338:1--338:19},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0772-0},
doi = {10.1186/S12859-015-0772-0},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/NowotnyAXOCHTCC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ObulkasimFZRH15,
author = {Askar Obulkasim and
Maarten Fornerod and
Michel Zwaan and
Dirk Reinhardt and
Marry M. van den Heuvel{-}Eibrink},
title = {Subtype prediction in pediatric acute myeloid leukemia: classification
using differential network rank conservation revisited},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {305:1--305:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0737-3},
doi = {10.1186/S12859-015-0737-3},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ObulkasimFZRH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ObulkasimMW15,
author = {Askar Obulkasim and
Gerrit A. Meijer and
Mark A. van de Wiel},
title = {Semi-supervised adaptive-height snipping of the hierarchical clustering
tree},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {15:1--15:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0448-1},
doi = {10.1186/S12859-014-0448-1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ObulkasimMW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OgoeVLG15,
author = {Henry Ogoe and
Shyam Visweswaran and
Xinghua Lu and
Vanathi Gopalakrishnan},
title = {Knowledge transfer via classification rules using functional mapping
for integrative modeling of gene expression data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {226:1--226:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0643-8},
doi = {10.1186/S12859-015-0643-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OgoeVLG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OkadaIH15,
author = {Daiki Okada and
Fumihiko Ino and
Kenichi Hagihara},
title = {Accelerating the Smith-Waterman algorithm with interpair pruning and
band optimization for the all-pairs comparison of base sequences},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {321:1--321:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0744-4},
doi = {10.1186/S12859-015-0744-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OkadaIH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OliveiraOT15,
author = {Lariza Laura de Oliveira and
Paulo de Oliveira and
Renato Tin{\'{o}}s},
title = {A multiobjective approach to the genetic code adaptability problem},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {52:1--52:20},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0480-9},
doi = {10.1186/S12859-015-0480-9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OliveiraOT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OzahataSDCF15,
author = {Mina Ozahata and
Ester C. Sabino and
Ricardo Diaz and
Roberto Marcondes Cesar Jr. and
Jo{\~{a}}o Eduardo Ferreira},
title = {Data-intensive analysis of {HIV} mutations},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {35:1--35:23},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0452-0},
doi = {10.1186/S12859-015-0452-0},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/OzahataSDCF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Pala15,
author = {Irene Pala},
title = {{BMC} Bioinformatics reviewer acknowledgement 2014},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {87:1--87:23},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0459-6},
doi = {10.1186/S12859-015-0459-6},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Pala15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PandeyDGBAATM15,
author = {Vibha Pandey and
Yogeshwar Dhar and
Parul Gupta and
Sumit K. Bag and
Neelam Atri and
Mehar Asif and
Prabodh Trivedi and
Pratibha Misra},
title = {Comparative interactions of withanolides and sterols with two members
of sterol glycosyltransferases from Withania somnifera},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {120:1--120:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0563-7},
doi = {10.1186/S12859-015-0563-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PandeyDGBAATM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ParidaH15,
author = {Laxmi Parida and
Niina Haiminen},
title = {SimBA: simulation algorithm to fit extant-population distributions},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {82:1--82:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0525-0},
doi = {10.1186/S12859-015-0525-0},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ParidaH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PatelRL15,
author = {Sejal Patel and
Paola Roncaglia and
Ruth C. Lovering},
title = {Using Gene Ontology to describe the role of the neurexin-neuroligin-SHANK
complex in human, mouse and rat and its relevance to autism},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {186:1--186:18},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0622-0},
doi = {10.1186/S12859-015-0622-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PatelRL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PaulinoWVRJB15,
author = {Daniel Paulino and
Ren{\'{e}} L. Warren and
Benjamin P. Vandervalk and
Anthony Raymond and
Shaun D. Jackman and
Inan{\c{c}} Birol},
title = {Sealer: a scalable gap-closing application for finishing draft genomes},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {230:1--230:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0663-4},
doi = {10.1186/S12859-015-0663-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PaulinoWVRJB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PeabodyRLB15,
author = {Michael A. Peabody and
Thea Van Rossum and
Raymond Lo and
Fiona S. L. Brinkman},
title = {Evaluation of shotgun metagenomics sequence classification methods
using in silico and in vitro simulated communities},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {362:1--362:19},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0788-5},
doi = {10.1186/S12859-015-0788-5},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PeabodyRLB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PelosiAMPM15,
author = {Michele Pelosi and
Marco Alf{\`{o}} and
Francesca Martella and
Elisa Pappalardo and
Antonio Musaro},
title = {Finite mixture clustering of human tissues with different levels of
{IGF-1} splice variants mRNA transcripts},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {289:1--289:17},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0689-7},
doi = {10.1186/S12859-015-0689-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PelosiAMPM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PengUKWRC15,
author = {Jiajie Peng and
Sahra Uygun and
Taehyong Kim and
Yadong Wang and
Seung Y. Rhee and
Jin Chen},
title = {Measuring semantic similarities by combining gene ontology annotations
and gene co-function networks},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {44:1--44:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0474-7},
doi = {10.1186/S12859-015-0474-7},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PengUKWRC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PereaDHH15,
author = {Jose A. Perea and
Anastasia Deckard and
Steven B. Haase and
John Harer},
title = {SW1PerS: Sliding windows and 1-persistence scoring; discovering periodicity
in gene expression time series data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {257:1--257:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0645-6},
doi = {10.1186/S12859-015-0645-6},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PereaDHH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PereaLMCDPO15,
author = {Marc Perea and
Ivar Lugtenburg and
Eduardo Mayol and
Arnau Cordom{\'{\i}} and
Xavier Deup{\'{\i}} and
Leonardo Pardo and
Mireia Olivella},
title = {TMalphaDB and TMbetaDB: web servers to study the structural role of
sequence motifs in {\(\alpha\)}-helix and {\(\beta\)}-barrel domains
of membrane proteins},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {266:1--266:6},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0699-5},
doi = {10.1186/S12859-015-0699-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PereaLMCDPO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PereiraACRBJ15,
author = {Filipa Pereira and
Fl{\'{a}}vio Azevedo and
{\^{A}}ngela Carvalho and
Gabriela F. Ribeiro and
Mark W. Budde and
Bj{\"{o}}rn Johansson},
title = {Pydna: a simulation and documentation tool for {DNA} assembly strategies
using python},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {142:1--142:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0544-x},
doi = {10.1186/S12859-015-0544-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PereiraACRBJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PirayreCBDP15,
author = {Aur{\'{e}}lie Pirayre and
Camille Couprie and
Fr{\'{e}}d{\'{e}}rique Bidard and
Laurent Duval and
Jean{-}Christophe Pesquet},
title = {{BRANE} Cut: biologically-related a priori network enhancement with
graph cuts for gene regulatory network inference},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {368:1--368:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0754-2},
doi = {10.1186/S12859-015-0754-2},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PirayreCBDP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PirieWLTP15,
author = {Ailith Pirie and
Angela M. Wood and
Michael Lush and
Jonathan P. Tyrer and
Paul D. P. Pharoah},
title = {The effect of rare variants on inflation of the test statistics in
case-control analyses},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {53:1--53:5},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0496-1},
doi = {10.1186/S12859-015-0496-1},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PirieWLTP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PopS15,
author = {Mihai Pop and
Steven Salzberg},
title = {Use and mis-use of supplementary material in science publications},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {237:1--237:4},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0668-z},
doi = {10.1186/S12859-015-0668-Z},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PopS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PutnamWZ15,
author = {Patrick Putnam and
Philip A. Wilsey and
Ge Zhang},
title = {Clotho: addressing the scalability of forward time population genetic
simulation},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {191:1--191:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0631-z},
doi = {10.1186/S12859-015-0631-Z},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PutnamWZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/QinLCMHCMOJWLW15,
author = {Maochun Qin and
Biao Liu and
Jeffrey M. Conroy and
Carl D. Morrison and
Qiang Hu and
Yubo Cheng and
Mitsuko Murakami and
Adekunle O. Odunsi and
Candace S. Johnson and
Lei Wei and
Song Liu and
Jianmin Wang},
title = {SCNVSim: somatic copy number variation and structure variation simulator},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {66:1--66:6},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0502-7},
doi = {10.1186/S12859-015-0502-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/QinLCMHCMOJWLW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Quigley15,
author = {David Quigley},
title = {Equalizer reduces {SNP} bias in Affymetrix microarrays},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {238:1--238:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0669-y},
doi = {10.1186/S12859-015-0669-Y},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Quigley15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RanjbarPWR15,
author = {Mohammad R. Nezami Ranjbar and
Cristina Di Poto and
Yue Joseph Wang and
Habtom W. Ressom},
title = {{SIMAT:} {GC-SIM-MS} data analysis tool},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {259:1--259:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0681-2},
doi = {10.1186/S12859-015-0681-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RanjbarPWR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RatanOLM15,
author = {Aakrosh Ratan and
Thomas L. Olson and
Thomas P. Loughran and
Webb Miller},
title = {Identification of indels in next-generation sequencing data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {42:1--42:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0483-6},
doi = {10.1186/S12859-015-0483-6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RatanOLM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RautioL15,
author = {Sini Rautio and
Harri L{\"{a}}hdesm{\"{a}}ki},
title = {MixChIP: a probabilistic method for cell type specific protein-DNA
binding analysis},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {413:1--413:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0834-3},
doi = {10.1186/S12859-015-0834-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RautioL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RavikumarWLKL15,
author = {Ravikumar Komandur Elayavilli and
Kavishwar B. Wagholikar and
Dingcheng Li and
Jean{-}Pierre A. Kocher and
Hongfang Liu},
title = {Text mining facilitates database curation - extraction of mutation-disease
associations from Bio-medical literature},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {185:1--185:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0609-x},
doi = {10.1186/S12859-015-0609-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RavikumarWLKL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ReineckeSD15,
author = {Frank Reinecke and
Ravi Satya and
John DiCarlo},
title = {Quantitative analysis of differences in copy numbers using read depth
obtained from PCR-enriched samples and controls},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {17:1--17:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0428-5},
doi = {10.1186/S12859-014-0428-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ReineckeSD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RenS15,
author = {Huizhu Ren and
Ying Shen},
title = {RNA-binding residues prediction using structural features},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {249:1--249:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0691-0},
doi = {10.1186/S12859-015-0691-0},
timestamp = {Sat, 06 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RenS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RibeiroGHMSMFB15,
author = {Ant{\'{o}}nio Ribeiro and
Agnieszka Golicz and
Christine Hackett and
Iain Milne and
Gordon Stephen and
David F. Marshall and
Andrew J. Flavell and
Micha Bayer},
title = {An investigation of causes of false positive single nucleotide polymorphisms
using simulated reads from a small eukaryote genome},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {382:1--382:16},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0801-z},
doi = {10.1186/S12859-015-0801-Z},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RibeiroGHMSMFB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RicciVCGBD15,
author = {Leonardo Ricci and
Valerio Vescovo and
Chiara Cantaloni and
Margherita Grasso and
Mattia Barbareschi and
Michela Alessandra Denti},
title = {Statistical analysis of a Bayesian classifier based on the expression
of miRNAs},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {287:1--287:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0715-9},
doi = {10.1186/S12859-015-0715-9},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RicciVCGBD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RichardsHB15,
author = {Adam Richards and
Anthony Herrel and
Camille Bonneaud},
title = {htsint: a Python library for sequencing pipelines that combines data
through gene set generation},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {307:1--307:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0729-3},
doi = {10.1186/S12859-015-0729-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RichardsHB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RiosFCCPG15,
author = {Santiago R{\'{\i}}os and
Marta Fernandez and
Gianluigi Caltabiano and
Mercedes Campillo and
Leonardo Pardo and
Angel Gonzalez},
title = {GPCRtm: An amino acid substitution matrix for the transmembrane region
of class {A} {G} Protein-Coupled Receptors},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {206:1--206:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0639-4},
doi = {10.1186/S12859-015-0639-4},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RiosFCCPG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RivasE15,
author = {Elena Rivas and
Sean R. Eddy},
title = {Parameterizing sequence alignment with an explicit evolutionary model},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {406:1--406:23},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0832-5},
doi = {10.1186/S12859-015-0832-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RivasE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RiviereKIHBF15,
author = {Guillaume Rivi{\`{e}}re and
Christophe Klopp and
Nabihoudine Ibouniyamine and
Arnaud Huvet and
Pierre Boudry and
Pascal Favrel},
title = {GigaTON: an extensive publicly searchable database providing a new
reference transcriptome in the pacific oyster Crassostrea gigas},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {401:1--401:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0833-4},
doi = {10.1186/S12859-015-0833-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RiviereKIHBF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RobinsonGKTD15,
author = {Sean Robinson and
Garique Glonek and
Inge Koch and
Mark Thomas and
Christopher Davies},
title = {Alignment of time course gene expression data and the classification
of developmentally driven genes with hidden Markov models},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {196:1--196:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0634-9},
doi = {10.1186/S12859-015-0634-9},
timestamp = {Wed, 26 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RobinsonGKTD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RomanNFS15,
author = {Theodore Roman and
Amir Nayyeri and
Brittany Fasy and
Russell Schwartz},
title = {A simplicial complex-based approach to unmixing tumor progression
data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {254:1--254:17},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0694-x},
doi = {10.1186/S12859-015-0694-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RomanNFS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RuanYM15,
author = {Da Ruan and
Alastair Young and
Giovanni Montana},
title = {Differential analysis of biological networks},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {327:1--327:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0735-5},
doi = {10.1186/S12859-015-0735-5},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RuanYM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RuijterLAHPBBVU15,
author = {Jan Ruijter and
Steve Lefever and
Jasper Anckaert and
Jan Hellemans and
Michael W. Pfaffl and
Vladimir Benes and
Stephen Bustin and
Jo Vandesompele and
Andreas Untergasser},
title = {RDML-Ninja and RDMLdb for standardized exchange of qPCR data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {197:1--197:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0637-6},
doi = {10.1186/S12859-015-0637-6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RuijterLAHPBBVU15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Ruiz-BlancoPGM15,
author = {Yasser B. Ruiz{-}Blanco and
Waldo Paz and
James Green and
Yovani Marrero{-}Ponce},
title = {ProtDCal: {A} program to compute general-purpose-numerical descriptors
for sequences and 3D-structures of proteins},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {162:1--162:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0586-0},
doi = {10.1186/S12859-015-0586-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Ruiz-BlancoPGM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RussHL15,
author = {Daniel E. Russ and
Kwan{-}Yuet Ho and
Nancy S. Longo},
title = {HTJoinSolver: Human immunoglobulin {VDJ} partitioning using approximate
dynamic programming constrained by conserved motifs},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {170},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0589-x},
doi = {10.1186/S12859-015-0589-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RussHL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RybarczykSAZPAB15,
author = {Agnieszka Rybarczyk and
Natalia Szostak and
Maciej Antczak and
Tomasz Zok and
Mariusz Popenda and
Ryszard W. Adamiak and
Jacek Blazewicz and
Marta Szachniuk},
title = {New in silico approach to assessing {RNA} secondary structures with
non-canonical base pairs},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {276:1--276:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0718-6},
doi = {10.1186/S12859-015-0718-6},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RybarczykSAZPAB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SaberiFCE15,
author = {Saeed Saberi and
Pau Farr{\'{e}} and
Olivier Cuvier and
Eldon Emberly},
title = {Probing long-range interactions by extracting free energies from genome-wide
chromosome conformation capture data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {171:1--171:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0584-2},
doi = {10.1186/S12859-015-0584-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SaberiFCE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SachnevSNKS15,
author = {Vasily Sachnev and
Saras Saraswathi and
Rashid Niaz and
Andrzej Kloczkowski and
Suresh Sundaram},
title = {Multi-class {BCGA-ELM} based classifier that identifies biomarkers
associated with hallmarks of cancer},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {166:1--166:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0565-5},
doi = {10.1186/S12859-015-0565-5},
timestamp = {Tue, 07 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SachnevSNKS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SakellariouS15,
author = {Argiris Sakellariou and
George M. Spyrou},
title = {mAPKL: {R/} Bioconductor package for detecting gene exemplars and
revealing their characteristics},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {291:1--291:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0719-5},
doi = {10.1186/S12859-015-0719-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SakellariouS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SanchezW15,
author = {Humberto S{\'{a}}nchez and
Claire Wyman},
title = {SFMetrics: an analysis tool for scanning force microscopy images of
biomolecules},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {27:1--27:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0457-8},
doi = {10.1186/S12859-015-0457-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SanchezW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SandersSSYZ15,
author = {Jonathan Sanders and
Anil Singh and
Gabriella Sterne and
Bing Ye and
Jie Zhou},
title = {Learning-guided automatic three dimensional synapse quantification
for drosophila neurons},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {177:1--177:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0616-y},
doi = {10.1186/S12859-015-0616-Y},
timestamp = {Tue, 01 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SandersSSYZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SanquettaWCBNRS15,
author = {Carlos Sanquetta and
Jaime Wojciechowski and
Ana Paula Dalla Corte and
Alexandre Behling and
Sylvio P{\'{e}}llico Netto and
Aur{\'{e}}lio Rodrigues and
Mateus Sanquetta},
title = {Comparison of data mining and allometric model in estimation of tree
biomass},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {247:1--247:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0662-5},
doi = {10.1186/S12859-015-0662-5},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SanquettaWCBNRS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SantellaCKSYMKW15,
author = {Anthony Santella and
Ra{\'{u}}l Catena and
Ismar Kovacevic and
Pavak K. Shah and
Zidong Yu and
Javier Marquina{-}Solis and
Abhishek Kumar and
Yicong Wu and
James C. Schaff and
Daniel Col{\'{o}}n{-}Ramos and
Hari Shroff and
William Mohler and
Zhirong Bao},
title = {WormGUIDES: an interactive single cell developmental atlas and tool
for collaborative multidimensional data exploration},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {189:1--189:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0627-8},
doi = {10.1186/S12859-015-0627-8},
timestamp = {Thu, 28 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SantellaCKSYMKW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SantoniMA15,
author = {Federico Andrea Santoni and
Periklis Makrythanasis and
Stylianos E. Antonarakis},
title = {CATCHing putative causative variants in consanguineous families},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {310:1--310:5},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0727-5},
doi = {10.1186/S12859-015-0727-5},
timestamp = {Fri, 30 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SantoniMA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SaputraRLHSALS15,
author = {Dhany Saputra and
Simon Rasmussen and
Mette V. Larsen and
Nizar Haddad and
Maria Sperotto and
Frank Aarestrup and
Ole Lund and
Thomas Sicheritz{-}Pont{\'{e}}n},
title = {Reads2Type: a web application for rapid microbial taxonomy identification},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {398:1--398:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0829-0},
doi = {10.1186/S12859-015-0829-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SaputraRLHSALS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SawayaBBG15,
author = {Sterling Sawaya and
James Boocock and
Michael A. Black and
Neil J. Gemmell},
title = {Exploring possible {DNA} structures in real-time polymerase kinetics
using Pacific Biosciences sequencer data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {21:1--21:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0449-0},
doi = {10.1186/S12859-014-0449-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SawayaBBG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchallerWJDOGW15,
author = {Susanne Schaller and
Johannes Weinberger and
Ra{\'{u}}l Jim{\'{e}}nez{-}Heredia and
Martin Danzer and
Rainer Oberbauer and
Christian Gabriel and
Stephan M. Winkler},
title = {ImmunExplorer {(IMEX):} a software framework for diversity and clonality
analyses of immunoglobulins and {T} cell receptors on the basis of
IMGT/HighV-QUEST preprocessed {NGS} data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {252:1--252:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0687-9},
doi = {10.1186/S12859-015-0687-9},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SchallerWJDOGW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ScheuchHB15,
author = {Matthias Scheuch and
Dirk H{\"{o}}per and
Martin Beer},
title = {{RIEMS:} a software pipeline for sensitive and comprehensive taxonomic
classification of reads from metagenomics datasets},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {69:1--69:17},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0503-6},
doi = {10.1186/S12859-015-0503-6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ScheuchHB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchmidGG15,
author = {Marc W. Schmid and
Stefan Grob and
Ueli Grossniklaus},
title = {HiCdat: a fast and easy-to-use Hi-C data analysis tool},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {277:1--277:6},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0678-x},
doi = {10.1186/S12859-015-0678-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SchmidGG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchonenbergerDF15,
author = {Felix Sch{\"{o}}nenberger and
Anja Deutzmann and
Elisa Ferrando{-}May and
Dorit Merhof},
title = {Discrimination of cell cycle phases in PCNA-immunolabeled cells},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {180:1--180:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0618-9},
doi = {10.1186/S12859-015-0618-9},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SchonenbergerDF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchuettePCLG15,
author = {Scott Schuette and
Bryan Piatkowski and
Aaron Corley and
Daniel Lang and
Matt Geisler},
title = {Predicted protein-protein interactions in the moss Physcomitrella
patens: a new bioinformatic resource},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {89:1--89:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0524-1},
doi = {10.1186/S12859-015-0524-1},
timestamp = {Wed, 08 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SchuettePCLG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchwartzHSC15,
author = {Rachel Schwartz and
Kelly Harkins and
Anne Stone and
Reed A. Cartwright},
title = {A composite genome approach to identify phylogenetically informative
data from next-generation sequencing},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {193:1--193:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0632-y},
doi = {10.1186/S12859-015-0632-Y},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SchwartzHSC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SegalB15,
author = {Mark R. Segal and
Henrik Bengtsson},
title = {Reconstruction of 3D genome architecture via a two-stage algorithm},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {373:1--373:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0799-2},
doi = {10.1186/S12859-015-0799-2},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SegalB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SelitskyS15,
author = {Sara R. Selitsky and
Praveen Sethupathy},
title = {tDRmapper: challenges and solutions to mapping, naming, and quantifying
tRNA-derived RNAs from human small RNA-sequencing data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {354:1--354:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0800-0},
doi = {10.1186/S12859-015-0800-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SelitskyS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SenachakCH15,
author = {Jittisak Senachak and
Supapon Cheevadhanarak and
Apiradee Hongsthong},
title = {SpirPro: {A} Spirulina proteome database and web-based tools for the
analysis of protein-protein interactions at the metabolic level in
Spirulina (Arthrospira) platensis {C1}},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {233:1--233:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0676-z},
doi = {10.1186/S12859-015-0676-Z},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SenachakCH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SerraFFRTG15,
author = {Angela Serra and
Michele Fratello and
Vittorio Fortino and
Giancarlo Raiconi and
Roberto Tagliaferri and
Dario Greco},
title = {{MVDA:} a multi-view genomic data integration methodology},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {261:1--261:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0680-3},
doi = {10.1186/S12859-015-0680-3},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SerraFFRTG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShankarSSMLLNF15,
author = {Jyoti Shankar and
Sebastian Szpakowski and
Norma V. Solis and
Stephanie Mounaud and
Hong Liu and
Liliana Losada and
William C. Nierman and
Scott G. Filler},
title = {A systematic evaluation of high-dimensional, ensemble-based regression
for exploring large model spaces in microbiome analyses},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {31:1--31:18},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0467-6},
doi = {10.1186/S12859-015-0467-6},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ShankarSSMLLNF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SilvaYDGGSMSF15,
author = {Joana Vieira Silva and
Sooyeon Yoon and
Sara Domingues and
Sofia Guimar{\~{a}}es and
Alexander V. Goltsev and
Edgar da Cruz e Silva and
Jos{\'{e}} F. F. Mendes and
Odete da Cruz e Silva and
Margarida Fardilha},
title = {Amyloid precursor protein interaction network in human testis: sentinel
proteins for male reproduction},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {12:1--12:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0432-9},
doi = {10.1186/S12859-014-0432-9},
timestamp = {Wed, 31 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SilvaYDGGSMSF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SimaderKNBLLKS15,
author = {Alexandra Simader and
Bernhard Kluger and
Nora Katharina Nicole Neumann and
Christoph Bueschl and
Marc Lemmens and
Gerald Lirk and
Rudolf Krska and
Rainer Schuhmacher},
title = {QCScreen: a software tool for data quality control in {LC-HRMS} based
metabolomics},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {341:1--341:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0783-x},
doi = {10.1186/S12859-015-0783-X},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SimaderKNBLLKS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SnipenL15,
author = {Lars Snipen and
Kristian Hovde Liland},
title = {micropanmicropan: an R-package for microbial pan-genomics},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {79:1--79:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0517-0},
doi = {10.1186/S12859-015-0517-0},
timestamp = {Mon, 21 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SnipenL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SongHSW15,
author = {Yang Song and
Lei Hua and
Bruce A. Shapiro and
Jason Tsong{-}Li Wang},
title = {Effective alignment of {RNA} pseudoknot structures using partition
function posterior log-odds scores},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {39:1--39:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0464-9},
doi = {10.1186/S12859-015-0464-9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SongHSW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SorokinaMV15,
author = {Maria Sorokina and
Claudine M{\'{e}}digue and
David Vallenet},
title = {A new network representation of the metabolism to detect chemical
transformation modules},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {385:1--385:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0809-4},
doi = {10.1186/S12859-015-0809-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SorokinaMV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SoutoJC15,
author = {Marc{\'{\i}}lio Carlos Pereira de Souto and
Pablo A. Jaskowiak and
Ivan G. Costa},
title = {Impact of missing data imputation methods on gene expression clustering
and classification},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {64:1--64:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0494-3},
doi = {10.1186/S12859-015-0494-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SoutoJC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SrinivasanZBC15,
author = {Padmini Srinivasan and
Xiao{-}Ning Zhang and
Roxane Bouten and
Caren Chang},
title = {Ferret: a sentence-based literature scanning system},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {198:1--198:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0630-0},
doi = {10.1186/S12859-015-0630-0},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SrinivasanZBC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/StadermannWH15,
author = {Kai Bernd Stadermann and
Bernd Weisshaar and
Daniela Holtgr{\"{a}}we},
title = {{SMRT} sequencing only de novo assembly of the sugar beet (Beta vulgaris)
chloroplast genome},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {295:1--295:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0726-6},
doi = {10.1186/S12859-015-0726-6},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/StadermannWH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/StandishCLPTHLC15,
author = {Kristopher Standish and
Tristan M. Carland and
Glenn K. Lockwood and
Wayne Pfeiffer and
Mahidhar Tatineni and
C. Huang and
Sarah Lamberth and
Yauheniya Cherkas and
Carrie Brodmerkel and
Ed Jaeger and
Lance Smith and
Gunaretnam Rajagopal and
Mark Curran and
Nicholas J. Schork},
title = {Group-based variant calling leveraging next-generation supercomputing
for large-scale whole-genome sequencing studies},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {304:1--304:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0736-4},
doi = {10.1186/S12859-015-0736-4},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/StandishCLPTHLC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SteibelWZ15,
author = {Juan P. Steibel and
Heng Wang and
Ping{-}Shou Zhong},
title = {A hidden Markov approach for ascertaining cSNP genotypes from {RNA}
sequence data in the presence of allelic imbalance by exploiting linkage
disequilibrium},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {61:1--61:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0479-2},
doi = {10.1186/S12859-015-0479-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SteibelWZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SteinQEBRCMB15,
author = {Caleb K. Stein and
Pingping Qu and
Joshua Epstein and
Amy Buros and
Adam Rosenthal and
John Crowley and
Gareth Morgan and
Bart Barlogie},
title = {Removing batch effects from purified plasma cell gene expression microarrays
with modified ComBat},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {63:1--63:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0478-3},
doi = {10.1186/S12859-015-0478-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SteinQEBRCMB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SuciuAC15,
author = {Radu M. Suciu and
Emir Aydin and
Brian E. Chen},
title = {GeneDig: a web application for accessing genomic and bioinformatics
knowledge},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {67:1--67:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0497-0},
doi = {10.1186/S12859-015-0497-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SuciuAC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SunZ15,
author = {Jiehuan Sun and
Hongyu Zhao},
title = {The application of sparse estimation of covariance matrix to quadratic
discriminant analysis},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {48:1--48:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0443-6},
doi = {10.1186/S12859-014-0443-6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SunZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TaguchiIU15,
author = {Y{-}h. Taguchi and
Mitsuo Iwadate and
Hideaki Umeyama},
title = {Principal component analysis-based unsupervised feature extraction
applied to in silico drug discovery for posttraumatic stress disorder-mediated
heart disease},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {139:1--139:26},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0574-4},
doi = {10.1186/S12859-015-0574-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TaguchiIU15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TanDJASMHWC15,
author = {Shi Yang Tan and
Avirup Dutta and
Nick S. Jakubovics and
Mia Yang Ang and
Cheuk C. Siow and
Naresh V. R. Mutha and
Hamed Heydari and
Guat Jah Wong and
Siew Woh Choo},
title = {YersiniaBase: a genomic resource and analysis platform for comparative
analysis of Yersinia},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {9:1--9:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0422-y},
doi = {10.1186/S12859-014-0422-Y},
timestamp = {Mon, 08 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TanDJASMHWC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TanchotsrinonLP15,
author = {Watcharaporn Tanchotsrinon and
Chidchanok Lursinsap and
Yong Poovorawan},
title = {A high performance prediction of {HPV} genotypes by Chaos game representation
and singular value decomposition},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {71:1--71:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0493-4},
doi = {10.1186/S12859-015-0493-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TanchotsrinonLP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Taneda15,
author = {Akito Taneda},
title = {Multi-objective optimization for {RNA} design with multiple target
secondary structures},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {280:1--280:20},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0706-x},
doi = {10.1186/S12859-015-0706-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Taneda15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TangSSK15,
author = {Min Tang and
Jianqiang Sun and
Kentaro Shimizu and
Koji Kadota},
title = {Evaluation of methods for differential expression analysis on multi-group
RNA-seq count data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {360:1--360:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0794-7},
doi = {10.1186/S12859-015-0794-7},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TangSSK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Temerinac-OttNM15,
author = {Maja Temerinac{-}Ott and
Armaghan W. Naik and
Robert F. Murphy},
title = {Deciding when to stop: efficient experimentation to learn to predict
drug-target interactions},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {213:1--213:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0650-9},
doi = {10.1186/S12859-015-0650-9},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Temerinac-OttNM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ThieleCSSGK15,
author = {Sven Thiele and
Luca Cerone and
Julio Saez{-}Rodriguez and
Anne Siegel and
Carito Guziolowski and
Steffen Klamt},
title = {Extended notions of sign consistency to relate experimental data to
signaling and regulatory network topologies},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {345:1--345:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0733-7},
doi = {10.1186/S12859-015-0733-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ThieleCSSGK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TiradoT15,
author = {{\'{O}}scar Torre{\~{n}}o Tirado and
Oswaldo Trelles},
title = {Breaking the computational barriers of pairwise genome comparison},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {250:1--250:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0679-9},
doi = {10.1186/S12859-015-0679-9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TiradoT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ToJRS15,
author = {Thu{-}Hien To and
Edwin Jacox and
Vincent Ranwez and
C{\'{e}}line Scornavacca},
title = {A fast method for calculating reliable event supports in tree reconciliations
via Pareto optimality},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {384:1--384:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0803-x},
doi = {10.1186/S12859-015-0803-X},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ToJRS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TongPG15,
author = {Jing Tong and
Jimin Pei and
Nick V. Grishin},
title = {{SFESA:} a web server for pairwise alignment refinement by secondary
structure shifts},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {282:1--282:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0711-0},
doi = {10.1186/S12859-015-0711-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TongPG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TorresDGCBE15,
author = {Jos{\'{e}} Torres and
Andr{\'{e}}s Dom{\'{\i}}nguez and
Joaqu{\'{\i}}n Gim{\'{e}}nez and
Ignacio Castell{\'{o}} and
Joaqu{\'{\i}}n Bl{\'{a}}zquez and
Ignacio Espert},
title = {Fast inexact mapping using advanced tree exploration on backward search
methods},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {18:1--18:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0438-3},
doi = {10.1186/S12859-014-0438-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TorresDGCBE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TournoudLCVPMLV15,
author = {Maud Tournoud and
Audrey Larue and
Marie{-}Angelique Cazalis and
Fabienne Venet and
Alexandre Pachot and
Guillaume Monneret and
Alain Lepape and
Jean{-}Baptiste Veyrieras},
title = {A strategy to build and validate a prognostic biomarker model based
on RT-qPCR gene expression and clinical covariates},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {106:1--106:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0537-9},
doi = {10.1186/S12859-015-0537-9},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TournoudLCVPMLV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TsatsaronisBMPZ15,
author = {George Tsatsaronis and
Georgios Balikas and
Prodromos Malakasiotis and
Ioannis Partalas and
Matthias Zschunke and
Michael R. Alvers and
Dirk Weissenborn and
Anastasia Krithara and
Sergios Petridis and
Dimitris Polychronopoulos and
Yannis Almirantis and
John Pavlopoulos and
Nicolas Baskiotis and
Patrick Gallinari and
Thierry Arti{\`{e}}res and
Axel{-}Cyrille Ngonga Ngomo and
Norman Heino and
{\'{E}}ric Gaussier and
Liliana Barrio{-}Alvers and
Michael Schroeder and
Ion Androutsopoulos and
Georgios Paliouras},
title = {An overview of the {BIOASQ} large-scale biomedical semantic indexing
and question answering competition},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {138:1--138:28},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0564-6},
doi = {10.1186/S12859-015-0564-6},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TsatsaronisBMPZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TsuyuzakiMINMN15,
author = {Koki Tsuyuzaki and
Gota Morota and
Manabu Ishii and
Takeru Nakazato and
Satoru Miyazaki and
Itoshi Nikaido},
title = {MeSH {ORA} framework: R/Bioconductor packages to support MeSH over-representation
analysis},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {45:1--45:17},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0453-z},
doi = {10.1186/S12859-015-0453-Z},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TsuyuzakiMINMN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TurnerBB15,
author = {Jacob A. Turner and
Christopher Bolen and
Derek Blankenship},
title = {Quantitative gene set analysis generalized for repeated measures,
confounder adjustment, and continuous covariates},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {272:1--272:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0707-9},
doi = {10.1186/S12859-015-0707-9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TurnerBB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/UricaruMCR15,
author = {Raluca Uricaru and
C{\'{e}}lia Michotey and
H{\'{e}}l{\`{e}}ne Chiapello and
Eric Rivals},
title = {YOC, {A} new strategy for pairwise alignment of collinear genomes},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {111:1--111:16},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0530-3},
doi = {10.1186/S12859-015-0530-3},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/UricaruMCR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VaradiGZT15,
author = {Mihaly Varadi and
Mainak Guharoy and
Fruzsina Zsolyomi and
Peter Tompa},
title = {DisCons: a novel tool to quantify and classify evolutionary conservation
of intrinsic protein disorder},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {153:1--153:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0592-2},
doi = {10.1186/S12859-015-0592-2},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/VaradiGZT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VecchioGMMCZAT15,
author = {Filippo Del Vecchio and
Francesco Gallo and
Antinisca Di Marco and
Valentina Mastroiaco and
Pasquale Caianiello and
Francesca Zazzeroni and
Edoardo Alesse and
Alessandra Tessitore},
title = {Bioinformatics approach to predict target genes for dysregulated microRNAs
in hepatocellular carcinoma: study on a chemically-induced {HCC} mouse
model},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {408:1--408:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0836-1},
doi = {10.1186/S12859-015-0836-1},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/VecchioGMMCZAT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VehlowKBHWG15,
author = {Corinna Vehlow and
David P. Kao and
Michael R. Bristow and
Lawrence E. Hunter and
Daniel Weiskopf and
Carsten G{\"{o}}rg},
title = {Visual analysis of biological data-knowledge networks},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {135:1--135:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0550-z},
doi = {10.1186/S12859-015-0550-Z},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/VehlowKBHWG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VerbistCRTVTWMA15,
author = {Bie M. P. Verbist and
Lieven Clement and
Joke Reumers and
Kim Thys and
Alexander Vapirev and
Willem Talloen and
Yves Wetzels and
Joris Meys and
Jeroen Aerssens and
Luc Bijnens and
Olivier Thas},
title = {ViVaMBC: estimating viral sequence variation in complex populations
from illumina deep-sequencing data using model-based clustering},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {59:1--59:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0458-7},
doi = {10.1186/S12859-015-0458-7},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VerbistCRTVTWMA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VinjeLAS15,
author = {Hilde Vinje and
Kristian Hovde Liland and
Trygve Alm{\o}y and
Lars Snipen},
title = {Comparing K-mer based methods for improved classification of 16S sequences},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {205:1--205:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0647-4},
doi = {10.1186/S12859-015-0647-4},
timestamp = {Mon, 21 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VinjeLAS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VrbikSRB15,
author = {Irene Vrbik and
David A. Stephens and
Michel Roger and
Bluma Brenner},
title = {The Gap Procedure: for the identification of phylogenetic clusters
in {HIV-1} sequence data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {355:1--355:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0791-x},
doi = {10.1186/S12859-015-0791-X},
timestamp = {Wed, 12 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/VrbikSRB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VyvermanBFD15,
author = {Micha{\"{e}}l Vyverman and
Bernard De Baets and
Veerle Fack and
Peter Dawyndt},
title = {A Long Fragment Aligner called {ALFALFA}},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {159:1--159:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0533-0},
doi = {10.1186/S12859-015-0533-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VyvermanBFD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WaardenbergBBH15,
author = {Ashley J. Waardenberg and
Samuel D. Bassett and
Romaric Bouveret and
Richard P. Harvey},
title = {CompGO: an {R} package for comparing and visualizing Gene Ontology
enrichment differences between {DNA} binding experiments},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {275:1--275:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0701-2},
doi = {10.1186/S12859-015-0701-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WaardenbergBBH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WahabzadaPKM15,
author = {Mirwaes Wahabzada and
Stefan Paulus and
Kristian Kersting and
Anne{-}Katrin Mahlein},
title = {Automated interpretation of 3D laserscanned point clouds for plant
organ segmentation},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {248:1--248:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0665-2},
doi = {10.1186/S12859-015-0665-2},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WahabzadaPKM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WalkerBOHBC15,
author = {Martin Walker and
Mar{\'{\i}}a{-}Gloria Bas{\'{a}}{\~{n}}ez and
Andr{\'{e}} Ou{\'{e}}draogo and
Cornelus Hermsen and
Teun Bousema and
Thomas S. Churcher},
title = {Improving statistical inference on pathogen densities estimated by
quantitative molecular methods: malaria gametocytaemia as a case study},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {5:1--5:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0402-2},
doi = {10.1186/S12859-014-0402-2},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WalkerBOHBC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangH15,
author = {Hongchu Wang and
Xuehai Hu},
title = {Accurate prediction of nuclear receptors with conjoint triad feature},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {402:1--402:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0828-1},
doi = {10.1186/S12859-015-0828-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangHL15,
author = {Ying Wang and
Haiyan Hu and
Xiaoman Li},
title = {{MBBC:} an efficient approach for metagenomic binning based on clustering},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {36:1--36:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0473-8},
doi = {10.1186/S12859-015-0473-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangHL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangLCXSJ15,
author = {Yi Wang and
Yi Li and
Hongbao Cao and
Momiao Xiong and
Yin Yao Shugart and
Li Jin},
title = {Efficient test for nonlinear dependence of two continuous variables},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {260:1--260:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0697-7},
doi = {10.1186/S12859-015-0697-7},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WangLCXSJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangMZKXY15,
author = {Tianmin Wang and
Hiroshi Mori and
Chong Zhang and
Ken Kurokawa and
Xin{-}Hui Xing and
Takuji Yamada},
title = {DomSign: a top-down annotation pipeline to enlarge enzyme space in
the protein universe},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {96:1--96:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0499-y},
doi = {10.1186/S12859-015-0499-Y},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WangMZKXY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangN15,
author = {Kai Wang and
Hiroki Nishida},
title = {{REGULATOR:} a database of metazoan transcription factors and maternal
factors for developmental studies},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {114:1--114:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0552-x},
doi = {10.1186/S12859-015-0552-X},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WangN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangWSL15,
author = {Yining Wang and
Tim Wylie and
Paul Stothard and
Guohui Lin},
title = {Whole genome {SNP} genotype piecemeal imputation},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {340:1--340:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0770-2},
doi = {10.1186/S12859-015-0770-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangWSL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangYWBS15,
author = {Yaojun Wang and
Fei Yang and
Peng Wu and
Dongbo Bu and
Shiwei Sun},
title = {OpenMS-Simulator: an open-source software for theoretical tandem mass
spectrum prediction},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {110:1--110:6},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0540-1},
doi = {10.1186/S12859-015-0540-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangYWBS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WeinsteinOMRAM15,
author = {Nathan Weinstein and
Elizabeth Ortiz{-}Guti{\'{e}}rrez and
Stalin Mu{\~{n}}oz and
David A. Rosenblueth and
Elena R. {\'{A}}lvarez{-}Buylla and
Luis Mendoza},
title = {A model of the regulatory network involved in the control of the cell
cycle and cell differentiation in the Caenorhabditis elegans vulva},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {81:1--81:21},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0498-z},
doi = {10.1186/S12859-015-0498-Z},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WeinsteinOMRAM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WeyerB15,
author = {Veronika Weyer and
Harald Binder},
title = {A weighting approach for judging the effect of patient strata on high-dimensional
risk prediction signatures},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {294:1--294:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0716-8},
doi = {10.1186/S12859-015-0716-8},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WeyerB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Wheeler15,
author = {Ward C. Wheeler},
title = {Phylogenetic network analysis as a parsimony optimization problem},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {296:1--296:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0675-0},
doi = {10.1186/S12859-015-0675-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Wheeler15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WillemSTBHB15,
author = {Lander Willem and
Sean Stijven and
Engelbert Tijskens and
Philippe Beutels and
Niel Hens and
Jan Broeckhove},
title = {Optimizing agent-based transmission models for infectious diseases},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {183:1--183:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0612-2},
doi = {10.1186/S12859-015-0612-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WillemSTBHB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WonKLLSP15,
author = {Sungho Won and
Wonji Kim and
Sungyoung Lee and
Young Lee and
Joohon Sung and
Taesung Park},
title = {Family-based association analysis: a fast and efficient method of
multivariate association analysis with multiple variants},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {46:1--46:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0484-5},
doi = {10.1186/S12859-015-0484-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WonKLLSP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Wright15,
author = {Erik Wright},
title = {{DECIPHER:} harnessing local sequence context to improve protein multiple
sequence alignment},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {322:1--322:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0749-z},
doi = {10.1186/S12859-015-0749-Z},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Wright15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WuR15,
author = {Allison Chia{-}Yi Wu and
Scott A. Rifkin},
title = {Aro: a machine learning approach to identifying single molecules and
estimating classification error in fluorescence microscopy images},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {102:1--102:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0534-z},
doi = {10.1186/S12859-015-0534-Z},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WuR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WuR15a,
author = {Steven H. Wu and
Allen G. Rodrigo},
title = {Estimation of evolutionary parameters using short, random and partial
sequences from mixed samples of anonymous individuals},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {357:1--357:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0810-y},
doi = {10.1186/S12859-015-0810-Y},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WuR15a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WuSZX15,
author = {Xiaowei Wu and
Ming{-}an Sun and
Hongxiao Zhu and
Hehuang Xie},
title = {Nonparametric Bayesian clustering to detect bipolar methylated genomic
loci},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {11:1--11:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0439-2},
doi = {10.1186/S12859-014-0439-2},
timestamp = {Thu, 18 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WuSZX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XiaACLFS15,
author = {Li C. Xia and
Dongmei Ai and
Jacob A. Cram and
Xiaoyi Liang and
Jed A. Fuhrman and
Fengzhu Sun},
title = {Statistical significance approximation in local trend analysis of
high-throughput time-series data using the theory of Markov chains},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {301:1--301:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0732-8},
doi = {10.1186/S12859-015-0732-8},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XiaACLFS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XieCW15,
author = {Zhong{-}Ru Xie and
Jiawen Chen and
Yinghao Wu},
title = {Decomposing the space of protein quaternary structures with the interface
fragment pair library},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {14:1--14:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0437-4},
doi = {10.1186/S12859-014-0437-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XieCW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XuCWAFQCT15,
author = {Yan Xu and
Luoxin Chen and
Junsheng Wei and
Sophia Ananiadou and
Yubo Fan and
Yi Qian and
Eric I{-}Chao Chang and
Jun'ichi Tsujii},
title = {Bilingual term alignment from comparable corpora in English discharge
summary and Chinese discharge summary},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {149:1--149:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0606-0},
doi = {10.1186/S12859-015-0606-0},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/XuCWAFQCT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XuYCWGZSMYYLX15,
author = {Fan Xu and
Jing Yang and
Jin Chen and
Qingyuan Wu and
Wei Gong and
Jianguo Zhang and
Weihua Shao and
Jun Mu and
Deyu Yang and
Yongtao Yang and
Zhiwei Li and
Peng Xie},
title = {Differential co-expression and regulation analyses reveal different
mechanisms underlying major depressive disorder and subsyndromal symptomatic
depression},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {112:1--112:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0543-y},
doi = {10.1186/S12859-015-0543-Y},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/XuYCWGZSMYYLX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangLWZDOJCCC15,
author = {Xinan Yang and
Meiyi Li and
Bin Wang and
Wanqi Zhu and
Aurelie Desgardin and
Kenan Onel and
Jill de Jong and
Jianjun Chen and
Luonan Chen and
John M. Cunningham},
title = {Systematic computation with functional gene-sets among leukemic and
hematopoietic stem cells reveals a favorable prognostic signature
for acute myeloid leukemia},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {97:1--97:21},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0510-7},
doi = {10.1186/S12859-015-0510-7},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YangLWZDOJCCC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangNGHTKGM15,
author = {Chen Yang and
Daniel Niedieker and
Frederik Gro{\ss}er{\"{u}}schkamp and
Melanie Horn and
Andrea Tannapfel and
Angela Kallenbach{-}Thieltges and
Klaus Gerwert and
Axel Mosig},
title = {Fully automated registration of vibrational microspectroscopic images
in histologically stained tissue sections},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {396:1--396:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0804-9},
doi = {10.1186/S12859-015-0804-9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YangNGHTKGM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YaoYY15,
author = {Shun Yao and
Shinjae Yoo and
Dantong Yu},
title = {Prior knowledge driven Granger causality analysis on gene regulatory
network discovery},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {273:1--273:18},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0710-1},
doi = {10.1186/S12859-015-0710-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YaoYY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YazdaniYB15,
author = {Akram Yazdani and
Azam Yazdani and
Eric Boerwinkle},
title = {Rare variants analysis using penalization methods for whole genome
sequence data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {405:1--405:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0825-4},
doi = {10.1186/S12859-015-0825-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YazdaniYB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YepesPCMA15,
author = {Antonio Jimeno{-}Yepes and
Laura Plaza and
Jorge Carrillo de Albornoz and
James G. Mork and
Alan R. Aronson},
title = {Feature engineering for {MEDLINE} citation categorization with MeSH},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {113:1--113:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0539-7},
doi = {10.1186/S12859-015-0539-7},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YepesPCMA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YuCKTD15,
author = {Fang Yu and
Ming{-}Hui Chen and
Lynn Kuo and
Heather Talbott and
John D. Davis},
title = {Confident difference criterion: a new Bayesian differentially expressed
gene selection algorithm with applications},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {245:1--245:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0664-3},
doi = {10.1186/S12859-015-0664-3},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YuCKTD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YuZD15,
author = {Guo{-}Xian Yu and
Hailong Zhu and
Carlotta Domeniconi},
title = {Predicting protein functions using incomplete hierarchical labels},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {1:1--1:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0430-y},
doi = {10.1186/S12859-014-0430-Y},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YuZD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YuZDL15,
author = {Guo{-}Xian Yu and
Hailong Zhu and
Carlotta Domeniconi and
Jiming Liu},
title = {Predicting protein function via downward random walks on a gene ontology},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {271:1--271:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0713-y},
doi = {10.1186/S12859-015-0713-Y},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YuZDL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YusufZOSMKRZAOY15,
author = {Nurlisa Yusuf and
Ammar Zakaria and
Mohammad Omar and
Ali Yeon Md Shakaff and
Maz Jamilah Masnan and
Latifah Kamarudin and
Norasmadi Abdul Rahim and
Nur Zawatil Isqi Zakaria and
Azian Abdullah and
Amizah Othman and
Mohd Yasin},
title = {In-vitro diagnosis of single and poly microbial species targeted for
diabetic foot infection using e-nose technology},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {158:1--158:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0601-5},
doi = {10.1186/S12859-015-0601-5},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YusufZOSMKRZAOY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZellersDD15,
author = {Rowan G. Zellers and
Robert A. Drewell and
Jacqueline M. Dresch},
title = {{MARZ:} an algorithm to combinatorially analyze gapped n-mer models
of transcription factor binding},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {30:1--30:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-014-0446-3},
doi = {10.1186/S12859-014-0446-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZellersDD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZengLMYJ15,
author = {Tao Zeng and
Rongjian Li and
Ravi Mukkamala and
Jieping Ye and
Shuiwang Ji},
title = {Deep convolutional neural networks for annotating gene expression
patterns in the mouse brain},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {147:1--147:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0553-9},
doi = {10.1186/S12859-015-0553-9},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZengLMYJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhanPG15,
author = {Xiang Zhan and
Andrew D. Patterson and
Debashis Ghosh},
title = {Kernel approaches for differential expression analysis of mass spectrometry-based
metabolomics data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {77:1--77:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0506-3},
doi = {10.1186/S12859-015-0506-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhanPG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangGCSC15,
author = {Xi{-}Mei Zhang and
Lin Guo and
Mei{-}Hua Chi and
Hong{-}Mei Sun and
Xiao{-}Wen Chen},
title = {Identification of active miRNA and transcription factor regulatory
pathways in human obesity-related inflammation},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {76:1--76:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0512-5},
doi = {10.1186/S12859-015-0512-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangGCSC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangGLC15,
author = {Xindong Zhang and
Lin Gao and
Zhi{-}Ping Liu and
Luonan Chen},
title = {Identifying module biomarker in type 2 diabetes mellitus by discriminative
area of functional activity},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {92:1--92:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0519-y},
doi = {10.1186/S12859-015-0519-Y},
timestamp = {Mon, 08 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangGLC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangLLZ15,
author = {Wen Zhang and
Feng Liu and
Longqiang Luo and
Jingxia Zhang},
title = {Predicting drug side effects by multi-label learning and ensemble
learning},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {365:1--365:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0774-y},
doi = {10.1186/S12859-015-0774-Y},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangLLZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangLYY0Z15,
author = {Yongpeng Zhang and
Linsen Li and
Yanli Yang and
Xiao Yang and
Shan He and
Zexuan Zhu},
title = {Light-weight reference-based compression of {FASTQ} data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {188:1--188:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0628-7},
doi = {10.1186/S12859-015-0628-7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangLYY0Z15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangOZWD15,
author = {Xiao{-}Fei Zhang and
Le Ou{-}Yang and
Yuan Zhu and
Meng{-}Yun Wu and
Dao{-}Qing Dai},
title = {Determining minimum set of driver nodes in protein-protein interaction
networks},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {146:1--146:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0591-3},
doi = {10.1186/S12859-015-0591-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangOZWD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhaoHCHA15,
author = {Yang Zhao and
Morihiro Hayashida and
Yue Cao and
Jaewook Hwang and
Tatsuya Akutsu},
title = {Grammar-based compression approach to extraction of common rules among
multiple trees of glycans and RNAs},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {128:1--128:13},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0558-4},
doi = {10.1186/S12859-015-0558-4},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhaoHCHA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhongHHXZ15,
author = {Chengyao Zhong and
Zhiwei Hou and
Jihua Huang and
Qingdong Xie and
Ying Zhong},
title = {Mutations and CpG islands among hepatitis {B} virus genotypes in Europe},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {38:1--38:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0481-8},
doi = {10.1186/S12859-015-0481-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhongHHXZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhuDGE15,
author = {Sha Zhu and
James H. Degnan and
Sharyn Goldstien and
Bjarki Eldon},
title = {Hybrid-Lambda: simulation of multiple merger and Kingman gene genealogies
in species networks and species trees},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {292:1--292:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0721-y},
doi = {10.1186/S12859-015-0721-Y},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhuDGE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhuLWCYQLZJLDZW15,
author = {Xiao Zhu and
Henry C. M. Leung and
Rongjie Wang and
Francis Y. L. Chin and
Siu{-}Ming Yiu and
Guangri Quan and
Yajie Li and
Rui Zhang and
Qinghua Jiang and
Bo Liu and
Yucui Dong and
Guohui Zhou and
Yadong Wang},
title = {misFinder: identify mis-assemblies in an unbiased manner using reference
and paired-end reads},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {386:1--386:16},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0818-3},
doi = {10.1186/S12859-015-0818-3},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhuLWCYQLZJLDZW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhuSGSFC15,
author = {Yongnan Zhu and
Liang Sun and
Alexander Garbarino and
Carl J. Schmidt and
Jinglong Fang and
Jian Chen},
title = {PathRings: a web-based tool for exploration of ortholog and expression
data in biological pathways},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {165:1--165:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0585-1},
doi = {10.1186/S12859-015-0585-1},
timestamp = {Thu, 02 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhuSGSFC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZvacekFHM15,
author = {Clemens Zv{\'{a}}cek and
Gerald Friedrichs and
Leonhard Heizinger and
Rainer Merkl},
title = {An assessment of catalytic residue 3D ensembles for the prediction
of enzyme function},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {359:1--359:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0807-6},
doi = {10.1186/S12859-015-0807-6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZvacekFHM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZychLVJLJA15,
author = {Konrad Zych and
Yang Li and
K. Joeri van der Velde and
Ronny Joosen and
Wilco Ligterink and
Ritsert C. Jansen and
Danny Arends},
title = {Pheno2Geno - High-throughput generation of genetic markers and maps
from molecular phenotypes for crosses between inbred strains},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {51:1--51:8},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0475-6},
doi = {10.1186/S12859-015-0475-6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZychLVJLJA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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