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@article{DBLP:journals/biomedsem/AlirezaieL14,
author = {Marjan Alirezaie and
Amy Loutfi},
title = {Automated Reasoning using Abduction for Interpretation of Medical
Signals},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {35},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-35},
doi = {10.1186/2041-1480-5-35},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/AlirezaieL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ArangurenGW14,
author = {Mikel Ega{\~{n}}a Aranguren and
Alejandro Rodr{\'{\i}}guez Gonz{\'{a}}lez and
Mark D. Wilkinson},
title = {Executing {SADI} services in Galaxy},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {42},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-42},
doi = {10.1186/2041-1480-5-42},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/ArangurenGW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/BalhoffDDLMV14,
author = {James P. Balhoff and
Wasila M. Dahdul and
Thomas Dececchi and
Hilmar Lapp and
Paula M. Mabee and
Todd J. Vision},
title = {Annotation of phenotypic diversity: decoupling data curation and ontology
curation using Phenex},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {45},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-45},
doi = {10.1186/2041-1480-5-45},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biomedsem/BalhoffDDLMV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ChaudhriEGGMWY14,
author = {Vinay K. Chaudhri and
Daniel Elenius and
Andrew Goldenkranz and
Allison Gong and
Maryann E. Martone and
William Webb and
Neil Yorke{-}Smith},
title = {Comparative analysis of knowledge representation and reasoning requirements
across a range of life sciences textbooks},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {51},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-51},
doi = {10.1186/2041-1480-5-51},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/ChaudhriEGGMWY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ClarkCG14,
author = {Tim Clark and
Paolo Ciccarese and
Carole A. Goble},
title = {Micropublications: a semantic model for claims, evidence, arguments
and annotations in biomedical communications},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {28},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-28},
doi = {10.1186/2041-1480-5-28},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/ClarkCG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ClarkSQCT14,
author = {Kimberly Clark and
Deepak K. Sharma and
Rui Qin and
Christopher G. Chute and
Cui Tao},
title = {A use case study on late stent thrombosis for ontology-based temporal
reasoning and analysis},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {49},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-49},
doi = {10.1186/2041-1480-5-49},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/ClarkSQCT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/DahdulCMMOWH14,
author = {Wasila M. Dahdul and
Hong Cui and
Paula M. Mabee and
Christopher J. Mungall and
David Osumi{-}Sutherland and
Ramona L. Walls and
Melissa A. Haendel},
title = {Nose to tail, roots to shoots: spatial descriptors for phenotypic
diversity in the Biological Spatial Ontology},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {34},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-34},
doi = {10.1186/2041-1480-5-34},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/DahdulCMMOWH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/Diallo14,
author = {Gayo Diallo},
title = {An effective method of large scale ontology matching},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {44},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-44},
doi = {10.1186/2041-1480-5-44},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/Diallo14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/DietzeBFHLORM14,
author = {Heiko Dietze and
Tanya Z. Berardini and
Rebecca E. Foulger and
David P. Hill and
Jane Lomax and
David Osumi{-}Sutherland and
Paola Roncaglia and
Christopher J. Mungall},
title = {TermGenie - {A} web application for pattern-based ontology class generation},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {48},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-48},
doi = {10.1186/2041-1480-5-48},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/DietzeBFHLORM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/DoulaverakisNKK14,
author = {Charalampos Doulaverakis and
George Nikolaidis and
Athanasios Kleontas and
Ioannis Kompatsiaris},
title = {Panacea, a semantic-enabled drug recommendations discovery framework},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {13},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-13},
doi = {10.1186/2041-1480-5-13},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/DoulaverakisNKK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/DumontierBBCCCRDFKKMQSVWH14,
author = {Michel Dumontier and
Christopher J. O. Baker and
Joachim Baran and
Alison Callahan and
Leonid L. Chepelev and
Jose Cruz{-}Toledo and
Nicholas R. Del Rio and
Geraint Duck and
Laura In{\'{e}}s Furlong and
Nichealla Keath and
Dana Klassen and
Jamie P. McCusker and
N{\'{u}}ria Queralt{-}Rosinach and
Matthias Samwald and
Natalia Villanueva{-}Rosales and
Mark D. Wilkinson and
Robert Hoehndorf},
title = {The Semanticscience Integrated Ontology {(SIO)} for biomedical research
and knowledge discovery},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {14},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-14},
doi = {10.1186/2041-1480-5-14},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/DumontierBBCCCRDFKKMQSVWH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/DupuchDHG14,
author = {Marie Dupuch and
La{\"{e}}titia Dupuch and
Thierry Hamon and
Natalia Grabar},
title = {Exploitation of semantic methods to cluster pharmacovigilance terms},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {18},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-18},
doi = {10.1186/2041-1480-5-18},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/DupuchDHG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/GonzalezCCGADW14,
author = {Alejandro Rodr{\'{\i}}guez Gonz{\'{a}}lez and
Alison Callahan and
Jos{\'{e}} Cruz{-}Toledo and
Adrian Garcia and
Mikel Ega{\~{n}}a Aranguren and
Michel Dumontier and
Mark D. Wilkinson},
title = {Automatically exposing OpenLifeData via {SADI} semantic Web Services},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {46},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-46},
doi = {10.1186/2041-1480-5-46},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/GonzalezCCGADW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/HaendelBBBBBCDDDHILMNRSM14,
author = {Melissa A. Haendel and
James P. Balhoff and
Frederic B. Bastian and
David C. Blackburn and
Judith A. Blake and
Yvonne M. Bradford and
Aur{\'{e}}lie Comte and
Wasila M. Dahdul and
Thomas Dececchi and
Robert E. Druzinsky and
Terry F. Hayamizu and
Nizar Ibrahim and
Suzanna E. Lewis and
Paula M. Mabee and
Anne Niknejad and
Marc Robinson{-}Rechavi and
Paul C. Sereno and
Christopher J. Mungall},
title = {Unification of multi-species vertebrate anatomy ontologies for comparative
biology in Uberon},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {21},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-21},
doi = {10.1186/2041-1480-5-21},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/HaendelBBBBBCDDDHILMNRSM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/HastingsBCJS14,
author = {Janna Hastings and
Andy Brass and
Colin Caine and
Caroline Jay and
Robert Stevens},
title = {Evaluating the Emotion Ontology through use in the self-reporting
of emotional responses at an academic conference},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {38},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-38},
doi = {10.1186/2041-1480-5-38},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/HastingsBCJS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/HeSLXGZJTTS14,
author = {Yongqun He and
Sirarat Sarntivijai and
Yu Lin and
Zuoshuang Xiang and
Abra Guo and
Shelley Zhang and
Desikan Jagannathan and
Luca Toldo and
Cui Tao and
Barry Smith},
title = {{OAE:} The Ontology of Adverse Events},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {29},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-29},
doi = {10.1186/2041-1480-5-29},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biomedsem/HeSLXGZJTTS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/HenrikssonMSDD14,
author = {Aron Henriksson and
Hans Moen and
Maria Skeppstedt and
Vidas Daudaravicius and
Martin Duneld},
title = {Synonym extraction and abbreviation expansion with ensembles of semantic
spaces},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {6},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-6},
doi = {10.1186/2041-1480-5-6},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/HenrikssonMSDD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/HettneD0WBSMTCVGRCKSHBGR14,
author = {Kristina M. Hettne and
Harish Dharuri and
Jun Zhao and
Katherine Wolstencroft and
Khalid Belhajjame and
Stian Soiland{-}Reyes and
Eleni Mina and
Mark Thompson and
Don Cruickshank and
Lourdes Verdes{-}Montenegro and
Juli{\'{a}}n Garrido and
David De Roure and
{\'{O}}scar Corcho and
Graham Klyne and
Reinout van Schouwen and
Peter A. C. 't Hoen and
Sean Bechhofer and
Carole A. Goble and
Marco Roos},
title = {Structuring research methods and data with the research object model:
genomics workflows as a case study},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {41},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-41},
doi = {10.1186/2041-1480-5-41},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/HettneD0WBSMTCVGRCKSHBGR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/HoehndorfRHS14,
author = {Robert Hoehndorf and
Dietrich Rebholz{-}Schuhmann and
Melissa A. Haendel and
Robert Stevens},
title = {Thematic series on biomedical ontologies in {JBMS:} challenges and
new directions},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {15},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-15},
doi = {10.1186/2041-1480-5-15},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/HoehndorfRHS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/KalankeshNBB14,
author = {Leila Kalankesh and
John P. New and
Patricia G. Baker and
Andy Brass},
title = {The languages of health in general practice electronic patient records:
a Zipf's law analysis},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {2},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-2},
doi = {10.1186/2041-1480-5-2},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/KalankeshNBB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/KarystianisBN14,
author = {George Karystianis and
Iain E. Buchan and
Goran Nenadic},
title = {Mining characteristics of epidemiological studies from Medline: a
case study in obesity},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {22},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-22},
doi = {10.1186/2041-1480-5-22},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/KarystianisBN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/KatayamaWAKYYOKKWWKOBKAAAAABBBBCCCCCC14,
author = {Toshiaki Katayama and
Mark D. Wilkinson and
Kiyoko F. Aoki{-}Kinoshita and
Shuichi Kawashima and
Yasunori Yamamoto and
Atsuko Yamaguchi and
Shinobu Okamoto and
Shin Kawano and
Jin{-}Dong Kim and
Yue Wang and
Hongyan Wu and
Yoshinobu Kano and
Hiromasa Ono and
Hidemasa Bono and
Simon Kocbek and
Jan Aerts and
Yukie Akune and
Erick Antezana and
Kazuharu Arakawa and
Bruno Aranda and
Joachim Baran and
Jerven T. Bolleman and
Raoul Jean Pierre Bonnal and
Pier Luigi Buttigieg and
Matthew P. Campbell and
Yi{-}an Chen and
Hirokazu Chiba and
Peter J. A. Cock and
Kevin Bretonnel Cohen and
Alexandru Constantin},
title = {BioHackathon series in 2011 and 2012: penetration of ontology and
linked data in life science domains},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {5},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-5},
doi = {10.1186/2041-1480-5-5},
timestamp = {Tue, 02 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/KatayamaWAKYYOKKWWKOBKAAAAABBBBCCCCCC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/KleinRHB14,
author = {Artjom Klein and
Alexandre Riazanov and
Matthew M. Hindle and
Christopher J. O. Baker},
title = {Benchmarking infrastructure for mutation text mining},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {11},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-11},
doi = {10.1186/2041-1480-5-11},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/KleinRHB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/KuhnNLK14,
author = {Tobias Kuhn and
Mate Levente Nagy and
Thaibinh Luong and
Michael Krauthammer},
title = {Mining images in biomedical publications: Detection and analysis of
gel diagrams},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {10},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-10},
doi = {10.1186/2041-1480-5-10},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/KuhnNLK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/LaurenneTSH14,
author = {Nina Laurenne and
Jouni Tuominen and
Hannu Saarenmaa and
Eero Hyv{\"{o}}nen},
title = {Making species checklists understandable to machines - a shift from
relational databases to ontologies},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {40},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-40},
doi = {10.1186/2041-1480-5-40},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/LaurenneTSH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/LinH14,
author = {Yu Lin and
Yongqun He},
title = {The ontology of genetic susceptibility factors {(OGSF)} and its application
in modeling genetic susceptibility to vaccine adverse events},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {19},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-19},
doi = {10.1186/2041-1480-5-19},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/LinH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/LingutlaPTCMJ14,
author = {Nikhil Lingutla and
Justin Preece and
Sinisa Todorovic and
Laurel Cooper and
Laura Moore and
Pankaj Jaiswal},
title = {{AISO:} Annotation of Image Segments with Ontologies},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {50},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-50},
doi = {10.1186/2041-1480-5-50},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/LingutlaPTCMJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/MagkaKH14,
author = {Despoina Magka and
Markus Kr{\"{o}}tzsch and
Ian Horrocks},
title = {A rule-based ontological framework for the classification of molecules},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {17},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-17},
doi = {10.1186/2041-1480-5-17},
timestamp = {Tue, 12 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/MagkaKH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/MaloneBLIHPS14,
author = {James Malone and
Andy Brown and
Allyson L. Lister and
Jon C. Ison and
Duncan Hull and
Helen E. Parkinson and
Robert Stevens},
title = {The Software Ontology {(SWO):} a resource for reproducibility in biomedical
data analysis, curation and digital preservation},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {25},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-25},
doi = {10.1186/2041-1480-5-25},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/MaloneBLIHPS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/MarciniakM14,
author = {Malgorzata Marciniak and
Agnieszka Mykowiecka},
title = {Terminology extraction from medical texts in Polish},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {24},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-24},
doi = {10.1186/2041-1480-5-24},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/MarciniakM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/NicholsMDNMTRB14,
author = {B. Nolan Nichols and
Jos{\'{e}} L. V. Mejino Jr. and
Landon Detwiler and
Trond T. Nilsen and
Maryann E. Martone and
Jessica A. Turner and
Daniel L. Rubin and
James F. Brinkley},
title = {Neuroanatomical domain of the foundational model of anatomy ontology},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {1},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-1},
doi = {10.1186/2041-1480-5-1},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/NicholsMDNMTRB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/PalombiUFLR14,
author = {Olivier Palombi and
Federico Ulliana and
Valentin Favier and
Jean{-}Claude L{\'{e}}on and
Marie{-}Christine Rousset},
title = {My Corporis Fabrica: an ontology-based tool for reasoning and querying
on complex anatomical models},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {20},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-20},
doi = {10.1186/2041-1480-5-20},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biomedsem/PalombiUFLR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/PaulGHZ14,
author = {Razan Paul and
Tudor Groza and
Jane Hunter and
Andreas Zankl},
title = {Semantic interestingness measures for discovering association rules
in the skeletal dysplasia domain},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {8},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-8},
doi = {10.1186/2041-1480-5-8},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/PaulGHZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/PesquitaFCS14,
author = {Catia Pesquita and
Jo{\~{a}}o D. Ferreira and
Francisco M. Couto and
M{\'{a}}rio J. Silva},
title = {The epidemiology ontology: an ontology for the semantic annotation
of epidemiological resources},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {4},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-4},
doi = {10.1186/2041-1480-5-4},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/PesquitaFCS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/PetriJTHSPLLNWSDMWJ14,
author = {Victoria Petri and
Pushkala Jayaraman and
Marek Tutaj and
G. Thomas Hayman and
Jennifer R. Smith and
Jeff de Pons and
Stanley J. F. Laulederkind and
Timothy Lowry and
Rajni Nigam and
Shur{-}Jen Wang and
Mary Shimoyama and
Melinda R. Dwinell and
Diane H. Munzenmaier and
Elizabeth A. Worthey and
Howard J. Jacob},
title = {The pathway ontology - updates and applications},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {7},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-7},
doi = {10.1186/2041-1480-5-7},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biomedsem/PetriJTHSPLLNWSDMWJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/RohlJ14,
author = {Johannes R{\"{o}}hl and
Ludger Jansen},
title = {Why functions are not special dispositions: an improved classification
of realizables for top-level ontologies},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {27},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-27},
doi = {10.1186/2041-1480-5-27},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/RohlJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/SaleemPNIADD14,
author = {Muhammad Saleem and
Shanmukha S. Padmanabhuni and
Axel{-}Cyrille Ngonga Ngomo and
Aftab Iqbal and
Jonas S. Almeida and
Stefan Decker and
Helena F. Deus},
title = {TopFed: {TCGA} Tailored Federated Query Processing and Linking to
{LOD}},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {47},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-47},
doi = {10.1186/2041-1480-5-47},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/SaleemPNIADD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/SarntivijaiLXMDVSPMPLTSMNBHZSPMCSAH14,
author = {Sirarat Sarntivijai and
Yu Lin and
Zuoshuang Xiang and
Terrence F. Meehan and
Alexander D. Diehl and
Uma D. Vempati and
Stephan C. Sch{\"{u}}rer and
Chao Pang and
James Malone and
Helen E. Parkinson and
Yue Liu and
Terue Takatsuki and
Kaoru Saijo and
Hiroshi Masuya and
Yukio Nakamura and
Matthew H. Brush and
Melissa A. Haendel and
Jie Zheng and
Christian J. Stoeckert Jr. and
Bjoern Peters and
Christopher J. Mungall and
Thomas E. Carey and
David J. States and
Brian D. Athey and
Yongqun He},
title = {{CLO:} The cell line ontology},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {37},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-37},
doi = {10.1186/2041-1480-5-37},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/SarntivijaiLXMDVSPMPLTSMNBHZSPMCSAH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/SlykeBWH14,
author = {Ceri E. Van Slyke and
Yvonne M. Bradford and
Monte Westerfield and
Melissa A. Haendel},
title = {The zebrafish anatomy and stage ontologies: representing the anatomy
and development of Danio rerio},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {12},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-12},
doi = {10.1186/2041-1480-5-12},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/SlykeBWH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/StenetorpPAT14,
author = {Pontus Stenetorp and
Sampo Pyysalo and
Sophia Ananiadou and
Jun'ichi Tsujii},
title = {Generalising semantic category disambiguation with large lexical resources
for fun and profit},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {26},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-26},
doi = {10.1186/2041-1480-5-26},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/StenetorpPAT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/TaoHA14,
author = {Cui Tao and
Yongqun He and
Sivaram Arabandi},
title = {A 2013 workshop: vaccine and drug ontology studies {(VDOS} 2013)},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {16},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-16},
doi = {10.1186/2041-1480-5-16},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/TaoHA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ThackerDKVSHM14,
author = {Robert W. Thacker and
Maria D{\'{\i}}az and
Adeline Kerner and
R{\'{e}}gine Vignes{-}Lebbe and
Erik Segerdell and
Melissa A. Haendel and
Christopher J. Mungall},
title = {The Porifera Ontology {(PORO):} enhancing sponge systematics with
an anatomy ontology},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {39},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-39},
doi = {10.1186/2041-1480-5-39},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/ThackerDKVSHM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ToriiWL14,
author = {Manabu Torii and
Kavishwar B. Wagholikar and
Hongfang Liu},
title = {Detecting concept mentions in biomedical text using hidden Markov
model: multiple concept types at once or one at a time?},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {3},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-3},
doi = {10.1186/2041-1480-5-3},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/ToriiWL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/VazFSJBPRRC14,
author = {C{\'{a}}tia Vaz and
Alexandre P. Francisco and
Mickael Silva and
Keith A. Jolley and
James E. Bray and
Hannes Pouseele and
J{\"{o}}rg Rothg{\"{a}}nger and
M{\'{a}}rio Ramirez and
Jo{\~{a}}o A. Carri{\c{c}}o},
title = {TypOn: the microbial typing ontology},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {43},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-43},
doi = {10.1186/2041-1480-5-43},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/VazFSJBPRRC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/Vihinen14,
author = {Mauno Vihinen},
title = {Variation ontology: annotator guide},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {9},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-9},
doi = {10.1186/2041-1480-5-9},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/Vihinen14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/WangJLL14,
author = {Liwei Wang and
Guoqian Jiang and
Dingcheng Li and
Hongfang Liu},
title = {Standardizing adverse drug event reporting data},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {36},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-36},
doi = {10.1186/2041-1480-5-36},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/WangJLL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/WinnenburgB14,
author = {Rainer Winnenburg and
Olivier Bodenreider},
title = {A framework for assessing the consistency of drug classes across sources},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {30},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-30},
doi = {10.1186/2041-1480-5-30},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/WinnenburgB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/WuFYBY14,
author = {Hongyan Wu and
Toyofumi Fujiwara and
Yasunori Yamamoto and
Jerven T. Bolleman and
Atsuko Yamaguchi},
title = {BioBenchmark Toyama 2012: an evaluation of the performance of triple
stores on biological data},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {32},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-32},
doi = {10.1186/2041-1480-5-32},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/WuFYBY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/YamagataKIOM14,
author = {Yuki Yamagata and
Kouji Kozaki and
Takeshi Imai and
Kazuhiko Ohe and
Riichiro Mizoguchi},
title = {An ontological modeling approach for abnormal states and its application
in the medical domain},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {23},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-23},
doi = {10.1186/2041-1480-5-23},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/YamagataKIOM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/YounesiAGACHHP14,
author = {Erfan Younesi and
Sam Ansari and
Michaela G{\"{u}}ndel and
Shiva Ahmadi and
Chris Coggins and
Julia Hoeng and
Martin Hofmann{-}Apitius and
Manuel C. Peitsch},
title = {{CSEO} - the Cigarette Smoke Exposure Ontology},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {31},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-31},
doi = {10.1186/2041-1480-5-31},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/YounesiAGACHHP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ZhangTJNSCL14,
author = {Yuji Zhang and
Cui Tao and
Guoqian Jiang and
Asha A. Nair and
Jian Su and
Christopher G. Chute and
Hongfang Liu},
title = {Network-based analysis reveals distinct association patterns in a
semantic MEDLINE-based drug-disease-gene network},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {33},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-33},
doi = {10.1186/2041-1480-5-33},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/ZhangTJNSCL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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