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@article{DBLP:journals/bioinformatics/AbeelPS09,
author = {Thomas Abeel and
Yves Van de Peer and
Yvan Saeys},
title = {Toward a gold standard for promoter prediction evaluation},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp191},
doi = {10.1093/BIOINFORMATICS/BTP191},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AbeelPS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Abney09,
author = {Mark Abney},
title = {A graphical algorithm for fast computation of identity coefficients
and generalized kinship coefficients},
journal = {Bioinform.},
volume = {25},
number = {12},
pages = {1561--1563},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp185},
doi = {10.1093/BIOINFORMATICS/BTP185},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Abney09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AbrusanGDM09,
author = {Gy{\"{o}}rgy Abrus{\'{a}}n and
Norbert Grundmann and
Luc DeMester and
Wojciech Makalowski},
title = {TEclass - a tool for automated classification of unknown eukaryotic
transposable elements},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1329--1330},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp084},
doi = {10.1093/BIOINFORMATICS/BTP084},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AbrusanGDM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Addo-QuayeMA09,
author = {Charles Addo{-}Quaye and
Webb Miller and
Michael J. Axtell},
title = {CleaveLand: a pipeline for using degradome data to find cleaved small
{RNA} targets},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {130--131},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn604},
doi = {10.1093/BIOINFORMATICS/BTN604},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Addo-QuayeMA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AfreixoBPGF09,
author = {Vera Afreixo and
Carlos A. C. Bastos and
Armando J. Pinho and
Sara P. Garcia and
Paulo Jorge S. G. Ferreira},
title = {Genome analysis with inter-nucleotide distances},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3064--3070},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp546},
doi = {10.1093/BIOINFORMATICS/BTP546},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AfreixoBPGF09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AgarwalY09,
author = {Shashank Agarwal and
Hong Yu},
title = {Automatically classifying sentences in full-text biomedical articles
into Introduction, Methods, Results and Discussion},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3174--3180},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp548},
doi = {10.1093/BIOINFORMATICS/BTP548},
timestamp = {Sun, 22 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AgarwalY09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AgrawalH09,
author = {Ankit Agrawal and
Xiaoqiu Huang},
title = {PSIBLAST{\_}PairwiseStatSig: reordering {PSI-BLAST} hits using pairwise
statistical significance},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {1082--1083},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp089},
doi = {10.1093/BIOINFORMATICS/BTP089},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AgrawalH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AhmedSSNN09,
author = {Shamim Ahmed and
Ayumu Saito and
Miho Suzuki and
Naoto Nemoto and
Koichi Nishigaki},
title = {Host-parasite relations of bacteria and phages can be unveiled by
\emph{Oligostickiness}, a measure of relaxed sequence similarity},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {563--570},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp003},
doi = {10.1093/BIOINFORMATICS/BTP003},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AhmedSSNN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AijoL09,
author = {Tarmo {\"{A}}ij{\"{o}} and
Harri L{\"{a}}hdesm{\"{a}}ki},
title = {Learning gene regulatory networks from gene expression measurements
using non-parametric molecular kinetics},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {2937--2944},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp511},
doi = {10.1093/BIOINFORMATICS/BTP511},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AijoL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlbaumNFLMTWKNG09,
author = {Stefan P. Albaum and
Heiko Neuweger and
Benjamin Fr{\"{a}}nzel and
Sita Lange and
Dominik Mertens and
Christian Tr{\"{o}}tschel and
Dirk Wolters and
J{\"{o}}rn Kalinowski and
Tim W. Nattkemper and
Alexander Goesmann},
title = {Qupe - a Rich Internet Application to take a step forward in the analysis
of mass spectrometry-based quantitative proteomics experiments},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3128--3134},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp568},
doi = {10.1093/BIOINFORMATICS/BTP568},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlbaumNFLMTWKNG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AleksievPPCM09,
author = {Tyanko Aleksiev and
Raffaello Potestio and
Francesco Pontiggia and
Stefano Cozzini and
Cristian Micheletti},
title = {PiSQRD: a web server for decomposing proteins into quasi-rigid dynamical
domains},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2743--2744},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp512},
doi = {10.1093/BIOINFORMATICS/BTP512},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AleksievPPCM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlexandridouTVNS09,
author = {Anastasia Alexandridou and
George T. Tsangaris and
Konstantinos N. Vougas and
Konstantina S. Nikita and
George M. Spyrou},
title = {UniMaP: finding unique mass and peptide signatures in the human proteome},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {3035--3037},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp516},
doi = {10.1093/BIOINFORMATICS/BTP516},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlexandridouTVNS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlexandrovDMDTMT09,
author = {Theodore Alexandrov and
Jens Decker and
Bart J. A. Mertens and
Andr{\'{e}} M. Deelder and
Rob A. E. M. Tollenaar and
Peter Maass and
Herbert Thiele},
title = {Biomarker discovery in {MALDI-TOF} serum protein profiles using discrete
wavelet transformation},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {643--649},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn662},
doi = {10.1093/BIOINFORMATICS/BTN662},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlexandrovDMDTMT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlexiouMPRH09,
author = {Panagiotis Alexiou and
Manolis Maragkakis and
Giorgos L. Papadopoulos and
Martin Reczko and
Artemis G. Hatzigeorgiou},
title = {Lost in translation: an assessment and perspective for computational
microRNA target identification},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3049--3055},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp565},
doi = {10.1093/BIOINFORMATICS/BTP565},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlexiouMPRH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AliD09,
author = {Waqar Ali and
Charlotte M. Deane},
title = {Functionally guided alignment of protein interaction networks for
module detection},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3166--3173},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp569},
doi = {10.1093/BIOINFORMATICS/BTP569},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AliD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlipanahiGKDL09,
author = {Babak Alipanahi and
Xin Gao and
Emre Karako{\c{c}} and
Logan Donaldson and
Ming Li},
title = {{PICKY:} a novel SVD-based {NMR} spectra peak picking method},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp225},
doi = {10.1093/BIOINFORMATICS/BTP225},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlipanahiGKDL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlleyneCBTBGPBMH09,
author = {Trevis M. Alleyne and
Lourdes Pe{\~{n}}a Castillo and
Gwenael Badis and
Shaheynoor Talukder and
Michael F. Berger and
Andrew R. Gehrke and
Anthony A. Philippakis and
Martha L. Bulyk and
Quaid Morris and
Timothy R. Hughes},
title = {Predicting the binding preference of transcription factors to individual
{DNA} \emph{k}-mers},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {1012--1018},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn645},
doi = {10.1093/BIOINFORMATICS/BTN645},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlleyneCBTBGPBMH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Almagro-GarciaMCCAMMPNKC09,
author = {Jacob Almagro{-}Garcia and
Magnus Manske and
Celine Carret and
Susana G. Campino and
Sarah Auburn and
Bronwyn L. MacInnis and
Gareth Maslen and
Arnab Pain and
Christopher I. Newbold and
Dominic Kwiatkowski and
Taane G. Clark},
title = {SnoopCGH: software for visualizing comparative genomic hybridization
data},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2732--2733},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp488},
doi = {10.1093/BIOINFORMATICS/BTP488},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Almagro-GarciaMCCAMMPNKC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlonEJRVTCKG09,
author = {Shahar Alon and
Eli Eisenberg and
Jasmine Jacob{-}Hirsch and
Gideon Rechavi and
Gad Vatine and
Reiko Toyama and
Steven L. Coon and
David C. Klein and
Yoav Gothilf},
title = {A new \emph{cis}-acting regulatory element driving gene expression
in the zebrafish pineal gland},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {559--562},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp031},
doi = {10.1093/BIOINFORMATICS/BTP031},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlonEJRVTCKG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AnandamTR09,
author = {Parvez Anandam and
Elfar Torarinsson and
Walter L. Ruzzo},
title = {Multiperm: shuffling multiple sequence alignments while approximately
preserving dinucleotide frequencies},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {668--669},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp006},
doi = {10.1093/BIOINFORMATICS/BTP006},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AnandamTR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Anders09,
author = {Simon Anders},
title = {Visualization of genomic data with the Hilbert curve},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1231--1235},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp152},
doi = {10.1093/BIOINFORMATICS/BTP152},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Anders09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AndersonRKRDD09,
author = {Paul E. Anderson and
Michael L. Raymer and
Benjamin J. Kelly and
Nicholas V. Reo and
Nicholas J. DelRaso and
Travis E. Doom},
title = {Characterization of \({}^{\mbox{1}}\)H {NMR} spectroscopic data and
the generation of synthetic validation sets},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {2992--3000},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp540},
doi = {10.1093/BIOINFORMATICS/BTP540},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AndersonRKRDD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AndreiniBCHT09,
author = {Claudia Andreini and
Ivano Bertini and
Gabriele Cavallaro and
Gemma L. Holliday and
Janet M. Thornton},
title = {Metal-MACiE: a database of metals involved in biological catalysis},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2088--2089},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp256},
doi = {10.1093/BIOINFORMATICS/BTP256},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AndreiniBCHT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AnjumDH09,
author = {Shahzia Anjum and
Arnaud Doucet and
Christopher C. Holmes},
title = {A boosting approach to structure learning of graphs with and without
prior knowledge},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {2929--2936},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp485},
doi = {10.1093/BIOINFORMATICS/BTP485},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AnjumDH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AraiWKY09,
author = {Hiromi Arai and
Satoru Watanabe and
Takanori Kigawa and
Masayuki Yamamura},
title = {A new modeling method in feature construction for the {HSQC} spectra
screening problem},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {948--953},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn345},
doi = {10.1093/BIOINFORMATICS/BTN345},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AraiWKY09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AsareGCWS09,
author = {Adam L. Asare and
Zhong Gao and
Vincent J. Carey and
Richard Wang and
Vicki Seyfert{-}Margolis},
title = {Power enhancement via multivariate outlier testing with gene expression
arrays},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {48--53},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn591},
doi = {10.1093/BIOINFORMATICS/BTN591},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AsareGCWS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AssefaKONB09,
author = {Samuel A. Assefa and
Thomas M. Keane and
Thomas D. Otto and
Chris Newbold and
Matthew Berriman},
title = {{ABACAS:} algorithm-based automatic contiguation of assembled sequences},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1968--1969},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp347},
doi = {10.1093/BIOINFORMATICS/BTP347},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AssefaKONB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BachmanL09,
author = {Philip Bachman and
Ying Liu},
title = {Structure discovery in {PPI} networks using pattern-based network
decomposition},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1814--1821},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp297},
doi = {10.1093/BIOINFORMATICS/BTP297},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BachmanL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BahloB09,
author = {Melanie Bahlo and
C. J. Bromhead},
title = {Generating linkage mapping files from Affymetrix {SNP} chip data},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1961--1962},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp313},
doi = {10.1093/BIOINFORMATICS/BTP313},
timestamp = {Tue, 27 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BahloB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BakheetD09,
author = {Tala Bakheet and
Andrew J. Doig},
title = {Properties and identification of human protein drug targets},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {451--457},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp002},
doi = {10.1093/BIOINFORMATICS/BTP002},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BakheetD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BandyopadhyayM09,
author = {Sanghamitra Bandyopadhyay and
Ramkrishna Mitra},
title = {TargetMiner: microRNA target prediction with systematic identification
of tissue-specific negative examples},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2625--2631},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp503},
doi = {10.1093/BIOINFORMATICS/BTP503},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BandyopadhyayM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaoGWZLS09,
author = {Hua Bao and
Hui Guo and
Jinwei Wang and
Renchao Zhou and
Xuemei Lu and
Suhua Shi},
title = {MapView: visualization of short reads alignment on a desktop computer},
journal = {Bioinform.},
volume = {25},
number = {12},
pages = {1554--1555},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp255},
doi = {10.1093/BIOINFORMATICS/BTP255},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaoGWZLS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BarencoPSBMH09,
author = {Martino Barenco and
E. Papouli and
Sonia H. Shah and
Daniel Brewer and
Crispin J. Miller and
Michael Hubank},
title = {rHVDM: an {R} package to predict the activity and targets of a transcription
factor},
journal = {Bioinform.},
volume = {25},
number = {3},
pages = {419--420},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn639},
doi = {10.1093/BIOINFORMATICS/BTN639},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BarencoPSBMH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BarkauskasAKLCWLMLR09,
author = {Donald A. Barkauskas and
Hyun Joo An and
Scott R. Kronewitter and
Maria Lorna de Leoz and
Helen K. Chew and
Ralph W. de Vere White and
Gary S. Leiserowitz and
Suzanne Miyamoto and
Carlito B. Lebrilla and
David M. Rocke},
title = {Detecting glycan cancer biomarkers in serum samples using {MALDI}
{FT-ICR} mass spectrometry data},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {251--257},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn610},
doi = {10.1093/BIOINFORMATICS/BTN610},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BarkauskasAKLCWLMLR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BarkerDRAR09,
author = {Michael S. Barker and
Katrina M. Dlugosch and
A. Chaitanya C. Reddy and
Sarah N. Amyotte and
Loren H. Rieseberg},
title = {{SCARF:} maximizing next-generation {EST} assemblies for evolutionary
and population genomic analyses},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {535--536},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp011},
doi = {10.1093/BIOINFORMATICS/BTP011},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BarkerDRAR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BartoliFKC09,
author = {Lisa Bartoli and
Piero Fariselli and
Anders Krogh and
Rita Casadio},
title = {CCHMM{\_}PROF: a HMM-based coiled-coil predictor with evolutionary
information},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2757--2763},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp539},
doi = {10.1093/BIOINFORMATICS/BTP539},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BartoliFKC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BarutcuogluADST09,
author = {Zafer Barut{\c{c}}uoglu and
Edoardo M. Airoldi and
Vanessa Dumeaux and
Robert E. Schapire and
Olga G. Troyanskaya},
title = {Aneuploidy prediction and tumor classification with heterogeneous
hidden conditional random fields},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1307--1313},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn585},
doi = {10.1093/BIOINFORMATICS/BTN585},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BarutcuogluADST09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BatemanFSWBS09,
author = {Alex Bateman and
Robert D. Finn and
Peter J. Sims and
Therese Wiedmer and
Andreas Biegert and
Johannes S{\"{o}}ding},
title = {Phospholipid scramblases and Tubby-like proteins belong to a new superfamily
of membrane tethered transcription factors},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {159--162},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn595},
doi = {10.1093/BIOINFORMATICS/BTN595},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BatemanFSWBS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BatemanQ09,
author = {Alex Bateman and
John Quackenbush},
title = {Editorial},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {429},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp037},
doi = {10.1093/BIOINFORMATICS/BTP037},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BatemanQ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BatemanW09,
author = {Alex Bateman and
Matt Wood},
title = {Cloud computing},
journal = {Bioinform.},
volume = {25},
number = {12},
pages = {1475},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp274},
doi = {10.1093/BIOINFORMATICS/BTP274},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BatemanW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BatuwitaP09,
author = {Rukshan Batuwita and
Vasile Palade},
title = {\emph{microPred}: effective classification of pre-miRNAs for human
miRNA gene prediction},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {989--995},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp107},
doi = {10.1093/BIOINFORMATICS/BTP107},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BatuwitaP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BauerB09,
author = {Denis C. Bauer and
Timothy L. Bailey},
title = {Optimizing static thermodynamic models of transcriptional regulation},
journal = {Bioinform.},
volume = {25},
number = {13},
pages = {1640--1646},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp283},
doi = {10.1093/BIOINFORMATICS/BTP283},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BauerB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BayjanovWSVSM09,
author = {Jumamurat R. Bayjanov and
Michiel Wels and
Marjo Starrenburg and
Johan E. T. van Hylckama Vlieg and
Roland J. Siezen and
Douwe Molenaar},
title = {PanCGH: a genotype-calling algorithm for pangenome {CGH} data},
journal = {Bioinform.},
volume = {25},
number = {3},
pages = {309--314},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn632},
doi = {10.1093/BIOINFORMATICS/BTN632},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BayjanovWSVSM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BecherDH09,
author = {Ver{\'{o}}nica Becher and
Alejandro Deymonnaz and
Pablo Ariel Heiber},
title = {Efficient computation of all perfect repeats in genomic sequences
of up to half a gigabyte, with a case study on the human genome},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1746--1753},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp321},
doi = {10.1093/BIOINFORMATICS/BTP321},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BecherDH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeckerWTLB09,
author = {Natalia Becker and
Wiebke Werft and
Grischa Toedt and
Peter Lichter and
Axel Benner},
title = {penalizedSVM: a R-package for feature selection {SVM} classification},
journal = {Bioinform.},
volume = {25},
number = {13},
pages = {1711--1712},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp286},
doi = {10.1093/BIOINFORMATICS/BTP286},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BeckerWTLB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeckstetteHGK09,
author = {Michael Beckstette and
Robert Homann and
Robert Giegerich and
Stefan Kurtz},
title = {Significant speedup of database searches with HMMs by search space
reduction with {PSSM} family models},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3251--3258},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp593},
doi = {10.1093/BIOINFORMATICS/BTP593},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BeckstetteHGK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BengtssonRSS09,
author = {Henrik Bengtsson and
Amrita Ray and
Paul T. Spellman and
Terence P. Speed},
title = {A single-sample method for normalizing and combining full-resolution
copy numbers from multiple platforms, labs and analysis methods},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {861--867},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp074},
doi = {10.1093/BIOINFORMATICS/BTP074},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BengtssonRSS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BengtssonWS09,
author = {Henrik Bengtsson and
Pratyaksha Wirapati and
Terence P. Speed},
title = {A single-array preprocessing method for estimating full-resolution
raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP
5 {\&} 6},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2149--2156},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp371},
doi = {10.1093/BIOINFORMATICS/BTP371},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BengtssonWS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BenoukrafCFJKJTIASF09,
author = {Touati Benoukraf and
Pierre Cauchy and
Romain Fenouil and
Adrien Jeanniard and
Frederic Koch and
S{\'{e}}bastien Jaeger and
Denis Thieffry and
Jean Imbert and
Jean{-}Christophe Andrau and
Salvatore Spicuglia and
Pierre Ferrier},
title = {CoCAS: a ChIP-on-chip analysis suite},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {954--955},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp075},
doi = {10.1093/BIOINFORMATICS/BTP075},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BenoukrafCFJKJTIASF09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BergerI09,
author = {Seth I. Berger and
Ravi Iyengar},
title = {Network analyses in systems pharmacology},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2466--2472},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp465},
doi = {10.1093/BIOINFORMATICS/BTP465},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BergerI09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BerrizBCTR09,
author = {Gabriel F. Berriz and
John E. Beaver and
Can Cenik and
Murat Tasan and
Frederick P. Roth},
title = {Next generation software for functional trend analysis},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {3043--3044},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp498},
doi = {10.1093/BIOINFORMATICS/BTP498},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BerrizBCTR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BhaskarS09,
author = {Anand Bhaskar and
Yun S. Song},
title = {Multi-locus match probability in a finite population: a fundamental
difference between the Moran and Wright-Fisher models},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp227},
doi = {10.1093/BIOINFORMATICS/BTP227},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BhaskarS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BhattacharyaD09,
author = {Anindya Bhattacharya and
Rajat K. De},
title = {Bi-correlation clustering algorithm for determining a set of co-regulated
genes},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2795--2801},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp526},
doi = {10.1093/BIOINFORMATICS/BTP526},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BhattacharyaD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BickelMHBLB09,
author = {David R. Bickel and
Zahra Montazeri and
Pei{-}Chun Hsieh and
Mary Beatty and
Shai J. Lawit and
Nicholas J. Bate},
title = {Gene network reconstruction from transcriptional dynamics under kinetic
model uncertainty: a case for the second derivative},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {772--779},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp028},
doi = {10.1093/BIOINFORMATICS/BTP028},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BickelMHBLB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BindeaMHCTKFPTG09,
author = {Gabriela Bindea and
Bernhard Mlecnik and
Hubert Hackl and
Pornpimol Charoentong and
Marie Tosolini and
Amos Kirilovsky and
Wolf{-}Herman Fridman and
Franck Pag{\`{e}}s and
Zlatko Trajanoski and
J{\'{e}}r{\^{o}}me Galon},
title = {ClueGO: a Cytoscape plug-in to decipher functionally grouped gene
ontology and pathway annotation networks},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {1091--1093},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp101},
doi = {10.1093/BIOINFORMATICS/BTP101},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BindeaMHCTKFPTG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BinderASB09,
author = {Harald Binder and
Arthur Allignol and
Martin Schumacher and
Jan Beyersmann},
title = {Boosting for high-dimensional time-to-event data with competing risks},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {890--896},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp088},
doi = {10.1093/BIOINFORMATICS/BTP088},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BinderASB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BinnsDHBOA09,
author = {David Binns and
Emily Dimmer and
Rachael P. Huntley and
Daniel Barrell and
Claire O'Donovan and
Rolf Apweiler},
title = {QuickGO: a web-based tool for Gene Ontology searching},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {3045--3046},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp536},
doi = {10.1093/BIOINFORMATICS/BTP536},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BinnsDHBOA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BirolJNQVSMZHSHCGMJ09,
author = {Inan{\c{c}} Birol and
Shaun D. Jackman and
Cydney B. Nielsen and
Jenny Q. Qian and
Richard Varhol and
Greg Stazyk and
Ryan D. Morin and
Yongjun Zhao and
Martin Hirst and
Jacqueline E. Schein and
Douglas E. Horsman and
Joseph M. Connors and
Randy D. Gascoyne and
Marco A. Marra and
Steven J. M. Jones},
title = {\emph{De novo} transcriptome assembly with ABySS},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2872--2877},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp367},
doi = {10.1093/BIOINFORMATICS/BTP367},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BirolJNQVSMZHSHCGMJ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Bishop09,
author = {Thomas C. Bishop},
title = {{VDNA:} The virtual {DNA} plug-in for {VMD}},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3187--3188},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp566},
doi = {10.1093/BIOINFORMATICS/BTP566},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Bishop09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BjorkholmDKFAH09,
author = {Patrik Bj{\"{o}}rkholm and
Pawel Daniluk and
Andriy Kryshtafovych and
Krzysztof Fidelis and
Robin Andersson and
Torgeir R. Hvidsten},
title = {Using multi-data hidden Markov models trained on local neighborhoods
of protein structure to predict residue-residue contacts},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1264--1270},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp149},
doi = {10.1093/BIOINFORMATICS/BTP149},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BjorkholmDKFAH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BjorkholmS09,
author = {Patrik Bj{\"{o}}rkholm and
Erik L. L. Sonnhammer},
title = {Comparative analysis and unification of domain-domain interaction
networks},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {3020--3025},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp522},
doi = {10.1093/BIOINFORMATICS/BTP522},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BjorkholmS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BlankenburgFPJRESBLA09,
author = {Hagen Blankenburg and
Robert D. Finn and
Andreas Prlic and
Andrew M. Jenkinson and
Fidel Ram{\'{\i}}rez and
Dorothea Emig and
Sven{-}Eric Schelhorn and
Joachim B{\"{u}}ch and
Thomas Lengauer and
Mario Albrecht},
title = {{DASMI:} exchanging, annotating and assessing molecular interaction
data},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1321--1328},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp142},
doi = {10.1093/BIOINFORMATICS/BTP142},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BlankenburgFPJRESBLA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BleakleyY09,
author = {Kevin Bleakley and
Yoshihiro Yamanishi},
title = {Supervised prediction of drug-target interactions using bipartite
local models},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2397--2403},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp433},
doi = {10.1093/BIOINFORMATICS/BTP433},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BleakleyY09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BlomRKH09,
author = {Evert{-}Jan Blom and
Jos B. T. M. Roerdink and
Oscar P. Kuipers and
Sacha A. F. T. van Hijum},
title = {{MOTIFATOR:} detection and characterization of regulatory motifs using
prokaryote transcriptome data},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {550--551},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp013},
doi = {10.1093/BIOINFORMATICS/BTP013},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BlomRKH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BlouinPLSR09,
author = {Christian Blouin and
Scott Perry and
Allan Lavell and
Edward Susko and
Andrew J. Roger},
title = {Reproducing the manual annotation of multiple sequence alignments
using a {SVM} classifier},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3093--3098},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp552},
doi = {10.1093/BIOINFORMATICS/BTP552},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BlouinPLSR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BockerLLP09,
author = {Sebastian B{\"{o}}cker and
Matthias C. Letzel and
Zsuzsanna Lipt{\'{a}}k and
Anton Pervukhin},
title = {{SIRIUS:} decomposing isotope patterns for metabolite identification},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {218--224},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn603},
doi = {10.1093/BIOINFORMATICS/BTN603},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BockerLLP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Bois09,
author = {Fr{\'{e}}d{\'{e}}ric Y. Bois},
title = {{GNU} MCSim: Bayesian statistical inference for SBML-coded systems
biology models},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1453--1454},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp162},
doi = {10.1093/BIOINFORMATICS/BTP162},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Bois09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BolchiniFPN09,
author = {Davide Bolchini and
Anthony Finkelstein and
Vito Perrone and
Sylvia Nagl},
title = {Better bioinformatics through usability analysis},
journal = {Bioinform.},
volume = {25},
number = {3},
pages = {406--412},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn633},
doi = {10.1093/BIOINFORMATICS/BTN633},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BolchiniFPN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BonzanniKFFKBH09,
author = {Nicola Bonzanni and
Elzbieta Krepska and
K. Anton Feenstra and
Wan J. Fokkink and
Thilo Kielmann and
Henri E. Bal and
Jaap Heringa},
title = {Executing multicellular differentiation: quantitative predictive modelling
of \emph{C.elegans} vulval development},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2049--2056},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp355},
doi = {10.1093/BIOINFORMATICS/BTP355},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BonzanniKFFKBH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BonzanniKFFKBH09a,
author = {Nicola Bonzanni and
Elzbieta Krepska and
K. Anton Feenstra and
Wan J. Fokkink and
Thilo Kielmann and
Henri E. Bal and
Jaap Heringa},
title = {Executing multicellular differentiation: quantitative predictive modelling
of C.elegans vulval development},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2624},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp509},
doi = {10.1093/BIOINFORMATICS/BTP509},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BonzanniKFFKBH09a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BorossOF09,
author = {G{\'{a}}bor Boross and
Katalin Orosz and
Ill{\'{e}}s J. Farkas},
title = {Human microRNAs co-silence in well-separated groups and have different
predicted essentialities},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {1063--1069},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp018},
doi = {10.1093/BIOINFORMATICS/BTP018},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BorossOF09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BostanGSL09,
author = {Babak Bostan and
Russell Greiner and
Duane Szafron and
Paul Lu},
title = {Predicting homologous signaling pathways using machine learning},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {2913--2920},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp532},
doi = {10.1093/BIOINFORMATICS/BTP532},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BostanGSL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BourgonMBSH09,
author = {Richard Bourgon and
Eugenio Mancera and
Alessandro Brozzi and
Lars M. Steinmetz and
Wolfgang Huber},
title = {Array-based genotyping in \emph{S.cerevisiae} using semi-supervised
clustering},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {1056--1062},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp104},
doi = {10.1093/BIOINFORMATICS/BTP104},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BourgonMBSH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Braga09,
author = {Mar{\'{\i}}lia D. V. Braga},
title = {\texttt{baobabLUNA}: the solution space of sorting by reversals},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1833--1835},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp285},
doi = {10.1093/BIOINFORMATICS/BTP285},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Braga09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BraggS09,
author = {Lauren M. Bragg and
Glenn Stone},
title = {\emph{k}-link {EST} clustering: evaluating error introduced by chimeric
sequences under different degrees of linkage},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2302--2308},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp410},
doi = {10.1093/BIOINFORMATICS/BTP410},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BraggS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrandonWB09,
author = {Marty C. Brandon and
Douglas C. Wallace and
Pierre Baldi},
title = {Data structures and compression algorithms for genomic sequence data},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1731--1738},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp319},
doi = {10.1093/BIOINFORMATICS/BTP319},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrandonWB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrelstaffBCC09,
author = {Gavin Brelstaff and
Manuele Bicego and
Nicola Culeddu and
Matilde Chessa},
title = {Bag of Peaks: interpretation of {NMR} spectrometry},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {258--264},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn599},
doi = {10.1093/BIOINFORMATICS/BTN599},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrelstaffBCC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrenkeKCBHLMV09,
author = {Ryan Brenke and
Dima Kozakov and
Gwo{-}Yu Chuang and
Dmitri Beglov and
David R. Hall and
Melissa R. Landon and
Carla Mattos and
Sandor Vajda},
title = {Fragment-based identification of druggable 'hot spots' of proteins
using Fourier domain correlation techniques},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {621--627},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp036},
doi = {10.1093/BIOINFORMATICS/BTP036},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrenkeKCBHLMV09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BreukelenTDH09,
author = {Bas van Breukelen and
Henk W. P. van den Toorn and
Madalina M. Drugan and
Albert J. R. Heck},
title = {StatQuant: a post-quantification analysis toolbox for improving quantitative
mass spectrometry},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1472--1473},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp181},
doi = {10.1093/BIOINFORMATICS/BTP181},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BreukelenTDH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrouwerHK09,
author = {Rutger W. W. Brouwer and
Sacha A. F. T. van Hijum and
Oscar P. Kuipers},
title = {{MINOMICS:} visualizing prokaryote transcriptomics and proteomics
data in a genomic context},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {139--140},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn588},
doi = {10.1093/BIOINFORMATICS/BTN588},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrouwerHK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrownE09,
author = {Jeremy M. Brown and
Robert ElDabaje},
title = {PuMA: Bayesian analysis of partitioned (and unpartitioned) model adequacy},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {537--538},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn651},
doi = {10.1093/BIOINFORMATICS/BTN651},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrownE09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrownOAMXDTJ09,
author = {Kevin R. Brown and
David Otasek and
Muhammad Ali and
Michael J. McGuffin and
Wing Xie and
Baiju Devani and
Ian Lawson van Toch and
Igor Jurisica},
title = {NAViGaTOR: Network Analysis, Visualization and Graphing Toronto},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3327--3329},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp595},
doi = {10.1093/BIOINFORMATICS/BTP595},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrownOAMXDTJ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrudnoMSV09,
author = {Michael Brudno and
Paul Medvedev and
Jens Stoye and
Francisco M. de la Vega},
title = {A report on the 2009 {SIG} on short read sequencing and algorithms
(Short-SIG)},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2863--2864},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp525},
doi = {10.1093/BIOINFORMATICS/BTP525},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrudnoMSV09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BudinskaGS09,
author = {Eva Budinska and
Eva Gelnarova and
Michael G. Schimek},
title = {{MSMAD:} a computationally efficient method for the analysis of noisy
array {CGH} data},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {703--713},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp022},
doi = {10.1093/BIOINFORMATICS/BTP022},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BudinskaGS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BuendiaCD09,
author = {Patricia Buendia and
Brice Cadwallader and
Victor DeGruttola},
title = {A phylogenetic and Markov model approach for the reconstruction of
mutational pathways of drug resistance},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2522--2529},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp466},
doi = {10.1093/BIOINFORMATICS/BTP466},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BuendiaCD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BukszarMO09,
author = {J{\'{o}}zsef Buksz{\'{a}}r and
Joseph L. McClay and
Edwin J. C. G. van den Oord},
title = {Estimating the posterior probability that genome-wide association
findings are true or false},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1807--1813},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp305},
doi = {10.1093/BIOINFORMATICS/BTP305},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BukszarMO09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BulhellerH09,
author = {Benjamin M. Bulheller and
Jonathan D. Hirst},
title = {DichroCalc - circular and linear dichroism online},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {539--540},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp016},
doi = {10.1093/BIOINFORMATICS/BTP016},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BulhellerH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BurgessMSC09,
author = {Agathe Burgess and
Jean Paul Mornon and
Genevi{\`{e}}ve de Saint{-}Basile and
Isabelle Callebaut},
title = {A concanavalin A-like lectin domain in the {CHS1/LYST} protein, shared
by members of the {BEACH} family},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1219--1222},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp151},
doi = {10.1093/BIOINFORMATICS/BTP151},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BurgessMSC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BusljeSDN09,
author = {Cristina Marino Buslje and
Javier Santos and
Jos{\'{e}} Mar{\'{\i}}a Delfino and
Morten Nielsen},
title = {Correction for phylogeny, small number of observations and data redundancy
improves the identification of coevolving amino acid pairs using mutual
information},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1125--1131},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp135},
doi = {10.1093/BIOINFORMATICS/BTP135},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BusljeSDN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ByunH09,
author = {Yanga Byun and
Kyungsook Han},
title = {PseudoViewer3: generating planar drawings of large-scale {RNA} structures
with pseudoknots},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1435--1437},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp252},
doi = {10.1093/BIOINFORMATICS/BTP252},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ByunH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaldasGFBK09,
author = {Jos{\'{e}} Caldas and
Nils Gehlenborg and
Ali Faisal and
Alvis Brazma and
Samuel Kaski},
title = {Probabilistic retrieval and visualization of biologically relevant
microarray experiments},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp215},
doi = {10.1093/BIOINFORMATICS/BTP215},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaldasGFBK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CampagnaABCFMVV09,
author = {Davide Campagna and
Alessandro Albiero and
Alessandra Bilardi and
Elisa Caniato and
Claudio Forcato and
Svetlin Manavski and
Nicola Vitulo and
Giorgio Valle},
title = {{PASS:} a program to align short sequences},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {967--968},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp087},
doi = {10.1093/BIOINFORMATICS/BTP087},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CampagnaABCFMVV09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CampsCEOHRCDGO09,
author = {Jordi Camps and
Oliver Carrillo and
Agust{\'{\i}} Emperador and
Laura Orellana and
Adam Hospital and
Manuel Rueda and
Damjan Cicin{-}Sain and
Marco D'Abramo and
Josep Lluis Gelp{\'{\i}} and
Modesto Orozco},
title = {FlexServ: an integrated tool for the analysis of protein flexibility},
journal = {Bioinform.},
volume = {25},
number = {13},
pages = {1709--1710},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp304},
doi = {10.1093/BIOINFORMATICS/BTP304},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CampsCEOHRCDGO09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaoGD09,
author = {Kim{-}Anh L{\^{e}} Cao and
Ignacio Gonz{\'{a}}lez and
S{\'{e}}bastien D{\'{e}}jean},
title = {integrOmics: an {R} package to unravel relationships between two omics
datasets},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2855--2856},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp515},
doi = {10.1093/BIOINFORMATICS/BTP515},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaoGD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Capella-GutierrezSG09,
author = {Salvador Capella{-}Guti{\'{e}}rrez and
Jos{\'{e}} M. Silla{-}Mart{\'{\i}}nez and
Toni Gabald{\'{o}}n},
title = {trimAl: a tool for automated alignment trimming in large-scale phylogenetic
analyses},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1972--1973},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp348},
doi = {10.1093/BIOINFORMATICS/BTP348},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Capella-GutierrezSG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CarbonIMSML09,
author = {Seth Carbon and
Amelia Ireland and
Christopher J. Mungall and
Shengqiang Shu and
Brad Marshall and
Suzanna Lewis},
title = {AmiGO: online access to ontology and annotation data},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {288--289},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn615},
doi = {10.1093/BIOINFORMATICS/BTN615},
timestamp = {Fri, 30 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CarbonIMSML09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CarbonellS09,
author = {Pablo Carbonell and
Antonio del Sol},
title = {Methyl side-chain dynamics prediction based on protein structure},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2552--2558},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp463},
doi = {10.1093/BIOINFORMATICS/BTP463},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CarbonellS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CareyDLGR09,
author = {Vincent J. Carey and
Adam R. Davis and
Michael F. Lawrence and
Robert Gentleman and
Benjamin A. Raby},
title = {Data structures and algorithms for analysis of genetics of gene expression
with Bioconductor: GGtools 3.x},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1447--1448},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp169},
doi = {10.1093/BIOINFORMATICS/BTP169},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CareyDLGR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Carlson09,
author = {Ross P. Carlson},
title = {Decomposition of complex microbial behaviors into resource-based stress
responses},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {90--97},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn589},
doi = {10.1093/BIOINFORMATICS/BTN589},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Carlson09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CarrRDMMB09,
author = {Ian M. Carr and
J. I. Robinson and
R. Dimitriou and
Alexander F. Markham and
A. W. Morgan and
David T. Bonthron},
title = {Inferring relative proportions of {DNA} variants from sequencing electropherograms},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3244--3250},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp583},
doi = {10.1093/BIOINFORMATICS/BTP583},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CarrRDMMB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CartwrightBOSB09,
author = {Dustin A. Cartwright and
Siobhan M. Brady and
David A. Orlando and
Bernd Sturmfels and
Philip N. Benfey},
title = {Reconstructing spatiotemporal gene expression data from partial observations},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2581--2587},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp437},
doi = {10.1093/BIOINFORMATICS/BTP437},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CartwrightBOSB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CarvalhoXHCBY09,
author = {Paulo C. Carvalho and
Tao Xu and
Xuemei Han and
Daniel Cociorva and
Valmir Carneiro Barbosa and
John R. Yates III},
title = {{YADA:} a tool for taking the most out of high-resolution spectra},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2734--2736},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp489},
doi = {10.1093/BIOINFORMATICS/BTP489},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CarvalhoXHCBY09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CarverTBBP09,
author = {Tim J. Carver and
Nick R. Thomson and
Alan J. Bleasby and
Matthew Berriman and
Julian Parkhill},
title = {DNAPlotter: circular and linear interactive genome visualization},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {119--120},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn578},
doi = {10.1093/BIOINFORMATICS/BTN578},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CarverTBBP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CastroFDSMMA09,
author = {Mauro A. A. Castro and
Jos{\'{e}} L. Rybarczyk Filho and
Rodrigo J. S. Dalmolin and
Marialva Sinigaglia and
Jos{\'{e}} C. F. Moreira and
Jos{\'{e}} C. M. Mombach and
Rita M. C. de Almeida},
title = {ViaComplex: software for landscape analysis of gene expression networks
in genomic context},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1468--1469},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp246},
doi = {10.1093/BIOINFORMATICS/BTP246},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CastroFDSMMA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CavillKHLNE09,
author = {Rachel Cavill and
Hector C. Keun and
Elaine Holmes and
John C. Lindon and
Jeremy K. Nicholson and
Timothy M. D. Ebbels},
title = {Genetic algorithms for simultaneous variable and sample selection
in metabonomics},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {112--118},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn586},
doi = {10.1093/BIOINFORMATICS/BTN586},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CavillKHLNE09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChangDTP09,
author = {Hang Chang and
Rosa Anna DeFilippis and
Thea D. Tlsty and
Bahram Parvin},
title = {Graphical methods for quantifying macromolecules through bright field
imaging},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {1070--1075},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn426},
doi = {10.1093/BIOINFORMATICS/BTN426},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChangDTP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChappleGK09,
author = {Charles E. Chapple and
Roderic Guig{\'{o}} and
Alain Krol},
title = {SECISaln, a web-based tool for the creation of structure-based alignments
of eukaryotic {SECIS} elements},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {674--675},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp020},
doi = {10.1093/BIOINFORMATICS/BTP020},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChappleGK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChautardBTR09,
author = {Emilie Chautard and
Lionel Ballut and
Nicolas Thierry{-}Mieg and
Sylvie Ricard{-}Blum},
title = {MatrixDB, a database focused on extracellular protein-protein and
protein-carbohydrate interactions},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {690--691},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp025},
doi = {10.1093/BIOINFORMATICS/BTP025},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChautardBTR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChelalaKL09,
author = {Claude Chelala and
Arshad Khan and
Nicholas R. Lemoine},
title = {SNPnexus: a web database for functional annotation of newly discovered
and public domain single nucleotide polymorphisms},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {655--661},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn653},
doi = {10.1093/BIOINFORMATICS/BTN653},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChelalaKL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenCC09,
author = {Feng{-}Chi Chen and
Yen{-}Zho Chen and
Trees{-}Juen Chuang},
title = {CNVVdb: a database of copy number variations across vertebrate genomes},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1419--1421},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp166},
doi = {10.1093/BIOINFORMATICS/BTP166},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenCC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenCL09,
author = {Bor{-}Sen Chen and
Chia{-}Hung Chang and
Hsiao{-}Ching Lee},
title = {Robust synthetic biology design: stochastic game theory approach},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1822--1830},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp310},
doi = {10.1093/BIOINFORMATICS/BTP310},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenCL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenJ09,
author = {Xue{-}wen Chen and
Jong Cheol Jeong},
title = {Sequence-based prediction of protein interaction sites with an integrative
method},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {585--591},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp039},
doi = {10.1093/BIOINFORMATICS/BTP039},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenJ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenLA09,
author = {Wei Chen and
Liming Liang and
Gon{\c{c}}alo R. Abecasis},
title = {{GWAS} {GUI:} graphical browser for the results of whole-genome association
studies with high-dimensional phenotypes},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {284--285},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn600},
doi = {10.1093/BIOINFORMATICS/BTN600},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenLA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenLHBLXS09,
author = {Shuo Chen and
Ming Li and
Don Hong and
Dean Billheimer and
Huiming Li and
Baogang J. Xu and
Yu Shyr},
title = {A novel comprehensive wave-form {MS} data processing method},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {808--814},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp060},
doi = {10.1093/BIOINFORMATICS/BTP060},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenLHBLXS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenSC09,
author = {Yangho Chen and
Tade Souaiaia and
Ting Chen},
title = {PerM: efficient mapping of short sequencing reads with periodic full
sensitive spaced seeds},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2514--2521},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp486},
doi = {10.1093/BIOINFORMATICS/BTP486},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenSC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenZZXSWLWL09,
author = {Lina Chen and
Liangcai Zhang and
Yan Zhao and
Liangde Xu and
Yukui Shang and
Qian Wang and
Wan Li and
Hong Wang and
Xia Li},
title = {Prioritizing risk pathways: a novel association approach to searching
for disease pathways fusing SNPs and pathways},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {237--242},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn613},
doi = {10.1093/BIOINFORMATICS/BTN613},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenZZXSWLWL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChengHGIV09,
author = {Fuxia Cheng and
Stefanie Hartmann and
Mayetri Gupta and
Joseph G. Ibrahim and
Todd J. Vision},
title = {A hierarchical model for incomplete alignments in phylogenetic inference},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {592--598},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp015},
doi = {10.1093/BIOINFORMATICS/BTP015},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChengHGIV09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChengHZ09,
author = {Qiong Cheng and
Robert W. Harrison and
Alexander Zelikovsky},
title = {MetNetAligner: a web service tool for metabolic network alignments},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1989--1990},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp287},
doi = {10.1093/BIOINFORMATICS/BTP287},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChengHZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChengSSLT09,
author = {Chunrong Cheng and
Kui Shen and
Chi Song and
Jianhua Luo and
George C. Tseng},
title = {Ratio adjustment and calibration scheme for gene-wise normalization
to enhance microarray inter-study prediction},
journal = {Bioinform.},
volume = {25},
number = {13},
pages = {1655--1661},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp292},
doi = {10.1093/BIOINFORMATICS/BTP292},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChengSSLT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChiPKS09,
author = {Pin{-}Hao Chi and
Bin Pang and
Dmitry Korkin and
Chi{-}Ren Shyu},
title = {Efficient SCOP-fold classification and retrieval using index-based
protein substructure alignments},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2559--2565},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp474},
doi = {10.1093/BIOINFORMATICS/BTP474},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChiPKS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChiquetSGMA09,
author = {Julien Chiquet and
Alexander Smith and
Gilles Grasseau and
Catherine Matias and
Christophe Ambroise},
title = {SIMoNe: Statistical Inference for MOdular NEtworks},
journal = {Bioinform.},
volume = {25},
number = {3},
pages = {417--418},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn637},
doi = {10.1093/BIOINFORMATICS/BTN637},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChiquetSGMA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChitaleHPK09,
author = {Meghana Chitale and
Troy Hawkins and
Changsoon Park and
Daisuke Kihara},
title = {{ESG:} extended similarity group method for automated protein function
prediction},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1739--1745},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp309},
doi = {10.1093/BIOINFORMATICS/BTP309},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChitaleHPK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChitsazSSB09,
author = {Hamidreza Chitsaz and
Raheleh Salari and
S{\"{u}}leyman Cenk Sahinalp and
Rolf Backofen},
title = {A partition function algorithm for interacting nucleic acid strands},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp212},
doi = {10.1093/BIOINFORMATICS/BTP212},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChitsazSSB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChoiK09,
author = {YounJeong Choi and
Christina Kendziorski},
title = {Statistical methods for gene set co-expression analysis},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2780--2786},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp502},
doi = {10.1093/BIOINFORMATICS/BTP502},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChoiK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChoiNGQ09,
author = {Hyungwon Choi and
Alexey I. Nesvizhskii and
Debashis Ghosh and
Zhaohui S. Qin},
title = {Hierarchical hidden Markov model with application to joint analysis
of ChIP-chip and ChIP-seq data},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1715--1721},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp312},
doi = {10.1093/BIOINFORMATICS/BTP312},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChoiNGQ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChowdharyZL09,
author = {Rajesh Chowdhary and
Jinfeng Zhang and
Jun S. Liu},
title = {Bayesian inference of protein-protein interactions from biological
literature},
journal = {Bioinform.},
volume = {25},
number = {12},
pages = {1536--1542},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp245},
doi = {10.1093/BIOINFORMATICS/BTP245},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChowdharyZL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChristleyLLX09,
author = {Scott Christley and
Yiming Lu and
Chen Li and
Xiaohui Xie},
title = {Human genomes as email attachments},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {274--275},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn582},
doi = {10.1093/BIOINFORMATICS/BTN582},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChristleyLLX09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChuBHP09,
author = {Tianjiao Chu and
Kimberly Bunce and
W. Allen Hogge and
David G. Peters},
title = {Statistical model for whole genome sequencing and its application
to minimally invasive diagnosis of fetal genetic disease},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1244--1250},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp156},
doi = {10.1093/BIOINFORMATICS/BTP156},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChuBHP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChuLLLS09,
author = {Te{-}Chin Chu and
Tsunglin Liu and
D. T. Lee and
Greg C. Lee and
Arthur Chun{-}Chieh Shih},
title = {GR-Aligner: an algorithm for aligning pairwise genomic sequences containing
rearrangement events},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2188--2193},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp372},
doi = {10.1093/BIOINFORMATICS/BTP372},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChuLLLS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChudovaILAS09,
author = {Darya Chudova and
Alexander Ihler and
Kevin K. Lin and
Bogi Andersen and
Padhraic Smyth},
title = {Bayesian detection of non-sinusoidal periodic patterns in circadian
expression data},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3114--3120},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp547},
doi = {10.1093/BIOINFORMATICS/BTP547},
timestamp = {Mon, 05 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChudovaILAS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ClaassenAB09,
author = {Manfred Claassen and
Ruedi Aebersold and
Joachim M. Buhmann},
title = {Proteome coverage prediction with infinite Markov models},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp233},
doi = {10.1093/BIOINFORMATICS/BTP233},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ClaassenAB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Clement-ZizaMWMALR09,
author = {Mathieu Cl{\'{e}}ment{-}Ziza and
Christophe Malabat and
Christian Weber and
Ivan Moszer and
Tero Aittokallio and
Catherine Letondal and
Sandrine Rousseau},
title = {Genoscape: a Cytoscape plug-in to automate the retrieval and integration
of gene expression data and molecular networks},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2617--2618},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp464},
doi = {10.1093/BIOINFORMATICS/BTP464},
timestamp = {Fri, 04 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Clement-ZizaMWMALR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ClimerJTZ09,
author = {Sharlee Climer and
Gerold J{\"{a}}ger and
Alan R. Templeton and
Weixiong Zhang},
title = {How frugal is mother nature with haplotypes?},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {68--74},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn572},
doi = {10.1093/BIOINFORMATICS/BTN572},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ClimerJTZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CloonanXFTTKG09,
author = {Nicole Cloonan and
Qinying Xu and
Geoffrey J. Faulkner and
Darrin F. Taylor and
Dave T. P. Tang and
Gabriel Kolle and
Sean M. Grimmond},
title = {{RNA-MATE:} a recursive mapping strategy for high-throughput RNA-sequencing
data},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2615--2616},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp459},
doi = {10.1093/BIOINFORMATICS/BTP459},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CloonanXFTTKG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CockACCCDFHKWH09,
author = {Peter J. A. Cock and
Tiago Antao and
Jeffrey T. Chang and
Brad A. Chapman and
Cymon J. Cox and
Andrew Dalke and
Iddo Friedberg and
Thomas Hamelryck and
Frank Kauff and
Bartek Wilczynski and
Michiel J. L. de Hoon},
title = {Biopython: freely available Python tools for computational molecular
biology and bioinformatics},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1422--1423},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp163},
doi = {10.1093/BIOINFORMATICS/BTP163},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CockACCCDFHKWH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ColvinMFHHP09,
author = {Joshua Colvin and
Michael I. Monine and
James R. Faeder and
William S. Hlavacek and
Daniel D. Von Hoff and
Richard G. Posner},
title = {Simulation of large-scale rule-based models},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {910--917},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp066},
doi = {10.1093/BIOINFORMATICS/BTP066},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ColvinMFHHP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CostaSHS09,
author = {Ivan G. Costa and
Alexander Sch{\"{o}}nhuth and
Christoph Hafemeister and
Alexander Schliep},
title = {Constrained mixture estimation for analysis and robust classification
of clinical time series},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp222},
doi = {10.1093/BIOINFORMATICS/BTP222},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CostaSHS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DaiYR09,
author = {Xiaofeng Dai and
Olli Yli{-}Harja and
Andre S. Ribeiro},
title = {Determining noisy attractors of delayed stochastic gene regulatory
networks from multiple data sources},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2362--2368},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp411},
doi = {10.1093/BIOINFORMATICS/BTP411},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DaiYR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DannemannLHKL09,
author = {Michael Dannemann and
Anna Lorenc and
Ines Hellmann and
Philipp Khaitovich and
Michael Lachmann},
title = {The effects of probe binding affinity differences on gene expression
measurements and how to deal with them},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2772--2779},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp492},
doi = {10.1093/BIOINFORMATICS/BTP492},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DannemannLHKL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DartyDP09,
author = {K{\'{e}}vin Darty and
Alain Denise and
Yann Ponty},
title = {{VARNA:} Interactive drawing and editing of the {RNA} secondary structure},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1974--1975},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp250},
doi = {10.1093/BIOINFORMATICS/BTP250},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DartyDP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DasVB09,
author = {Sarbashis Das and
Anchal Vishnoi and
Alok Bhattacharya},
title = {{ABWGAT:} anchor-based whole genome analysis tool},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3319--3320},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp587},
doi = {10.1093/BIOINFORMATICS/BTP587},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DasVB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DaveySE09,
author = {Norman E. Davey and
Denis C. Shields and
Richard J. Edwards},
title = {Masking residues using context-specific evolutionary conservation
significantly improves short linear motif discovery},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {443--450},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn664},
doi = {10.1093/BIOINFORMATICS/BTN664},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DaveySE09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DavisE09,
author = {Fred P. Davis and
Sean R. Eddy},
title = {A tool for identification of genes expressed in patterns of interest
using the Allen Brain Atlas},
journal = {Bioinform.},
volume = {25},
number = {13},
pages = {1647--1654},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp288},
doi = {10.1093/BIOINFORMATICS/BTP288},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DavisE09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DavisPS09,
author = {Oliver S. P. Davis and
Robert Plomin and
Leonard C. Schalkwyk},
title = {The SNPMaP package for {R:} a framework for genome-wide association
using {DNA} pooling on microarrays},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {281--283},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn587},
doi = {10.1093/BIOINFORMATICS/BTN587},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DavisPS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeLucaBWHHB09,
author = {David S. DeLuca and
Elena Beisswanger and
Joachim Wermter and
Peter A. Horn and
Udo Hahn and
Rainer Blasczyk},
title = {MaHCO: an ontology of the major histocompatibility complex for immunoinformatic
applications and text mining},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2064--2070},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp306},
doi = {10.1093/BIOINFORMATICS/BTP306},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DeLucaBWHHB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeLucaELKB09,
author = {David S. DeLuca and
Britta Eiz{-}Vesper and
Nektarios Ladas and
Barbara Anna{-}Maria Khattab and
Rainer Blasczyk},
title = {High-throughput minor histocompatibility antigen prediction},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2411--2417},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp404},
doi = {10.1093/BIOINFORMATICS/BTP404},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DeLucaELKB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DefranceH09,
author = {Matthieu Defrance and
Jacques van Helden},
title = {info-gibbs: a motif discovery algorithm that directly optimizes information
content during sampling},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2715--2722},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp490},
doi = {10.1093/BIOINFORMATICS/BTP490},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DefranceH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DegnerMPPNGP09,
author = {Jacob F. Degner and
John C. Marioni and
Athma A. Pai and
Joseph K. Pickrell and
Everlyne Nkadori and
Yoav Gilad and
Jonathan K. Pritchard},
title = {Effect of read-mapping biases on detecting allele-specific expression
from RNA-sequencing data},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3207--3212},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp579},
doi = {10.1093/BIOINFORMATICS/BTP579},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DegnerMPPNGP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DehouckGFGBR09,
author = {Yves Dehouck and
Aline Grosfils and
Benjamin Folch and
Dimitri Gilis and
Philippe Bogaerts and
Marianne Rooman},
title = {Fast and accurate predictions of protein stability changes upon mutations
using statistical potentials and neural networks: PoPMuSiC-2.0},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2537--2543},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp445},
doi = {10.1093/BIOINFORMATICS/BTP445},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DehouckGFGBR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeunHTLSM09,
author = {Katrijn Van Deun and
Herbert Hoijtink and
Lieven Thorrez and
Leentje Van Lommel and
Frans Schuit and
Iven Van Mechelen},
title = {Testing the hypothesis of tissue selectivity: the intersection-union
test and a Bayesian approach},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2588--2594},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp439},
doi = {10.1093/BIOINFORMATICS/BTP439},
timestamp = {Fri, 24 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DeunHTLSM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DidelotLF09,
author = {Xavier Didelot and
Daniel J. Lawson and
Daniel Falush},
title = {SimMLST: simulation of multi-locus sequence typing data under a neutral
model},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1442--1444},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp145},
doi = {10.1093/BIOINFORMATICS/BTP145},
timestamp = {Sat, 11 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DidelotLF09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DiellaCLCRNG09,
author = {Francesca Diella and
Sophie Chabanis{-}Davidson and
Katja Luck and
Claudia Chica and
Chenna Ramu and
Claus Nerlov and
Toby J. Gibson},
title = {{KEPE} - a motif frequently superimposed on sumoylation sites in metazoan
chromatin proteins and transcription factors},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {1--5},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn594},
doi = {10.1093/BIOINFORMATICS/BTN594},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DiellaCLCRNG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DietmannGATM09,
author = {Sabine Dietmann and
Elisabeth Georgii and
Alexey V. Antonov and
Koji Tsuda and
Hans{-}Werner Mewes},
title = {The {DICS} repository: module-assisted analysis of disease-related
gene lists},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {830--831},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp055},
doi = {10.1093/BIOINFORMATICS/BTP055},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DietmannGATM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DingelM09,
author = {Janis Dingel and
Olgica Milenkovic},
title = {List-decoding methods for inferring polynomials in finite dynamical
gene network models},
journal = {Bioinform.},
volume = {25},
number = {13},
pages = {1686--1693},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp281},
doi = {10.1093/BIOINFORMATICS/BTP281},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DingelM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Dlakic09,
author = {Mensur Dlakic},
title = {HHsvm: fast and accurate classification of profile-profile matches
identified by HHsearch},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3071--3076},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp555},
doi = {10.1093/BIOINFORMATICS/BTP555},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Dlakic09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Domazet-LosoH09,
author = {Mirjana Domazet{-}Loso and
Bernhard Haubold},
title = {Efficient estimation of pairwise distances between genomes},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3221--3227},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp590},
doi = {10.1093/BIOINFORMATICS/BTP590},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Domazet-LosoH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DongLNC09,
author = {Chao{-}Yi Dong and
Jisoon Lim and
Yoonkey Nam and
Kwang{-}Hyun Cho},
title = {Systematic analysis of synchronized oscillatory neuronal networks
reveals an enrichment for coupled direct and indirect feedback motifs},
journal = {Bioinform.},
volume = {25},
number = {13},
pages = {1680--1685},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp271},
doi = {10.1093/BIOINFORMATICS/BTP271},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DongLNC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DongZG09,
author = {Qiwen Dong and
Shuigeng Zhou and
Jihong Guan},
title = {A new taxonomy-based protein fold recognition approach based on autocross-covariance
transformation},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2655--2662},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp500},
doi = {10.1093/BIOINFORMATICS/BTP500},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DongZG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DosztanyiMS09,
author = {Zsuzsanna Doszt{\'{a}}nyi and
B{\'{a}}lint M{\'{e}}sz{\'{a}}ros and
Istv{\'{a}}n Simon},
title = {{ANCHOR:} web server for predicting protein binding regions in disordered
proteins},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2745--2746},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp518},
doi = {10.1093/BIOINFORMATICS/BTP518},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DosztanyiMS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Dotan-CohenKM09,
author = {Dikla Dotan{-}Cohen and
Simon Kasif and
Avraham A. Melkman},
title = {Seeing the forest for the trees: using the Gene Ontology to restructure
hierarchical clustering},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1789--1795},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp327},
doi = {10.1093/BIOINFORMATICS/BTP327},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Dotan-CohenKM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DragerPWSHEGMZ09,
author = {Andreas Dr{\"{a}}ger and
Hannes Planatscher and
Dieudonn{\'{e}} Motsou Wouamba and
Adrian Schr{\"{o}}der and
Michael Hucka and
Lukas Endler and
Martin Golebiewski and
Wolfgang M{\"{u}}ller and
Andreas Zell},
title = {SBML2L\({}^{\mbox{A}}\)T\({}_{\mbox{E}}\)X: Conversion of {SBML} files
into human-readable reports},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1455--1456},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp170},
doi = {10.1093/BIOINFORMATICS/BTP170},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DragerPWSHEGMZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DuFFSHKL09,
author = {Pan Du and
Gang Feng and
Jared Flatow and
Jie Song and
Michelle Holko and
Warren A. Kibbe and
Simon M. Lin},
title = {From disease ontology to disease-ontology lite: statistical methods
to adapt a general-purpose ontology for the test of gene-ontology
associations},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp193},
doi = {10.1093/BIOINFORMATICS/BTP193},
timestamp = {Tue, 09 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DuFFSHKL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DupierrisMCKB09,
author = {V{\'{e}}ronique Dupierris and
Christophe Masselon and
Magali Court and
Sylvie Kieffer{-}Jaquinod and
Christophe Bruley},
title = {A toolbox for validation of mass spectrometry peptides identification
and generation of database: IRMa},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1980--1981},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp301},
doi = {10.1093/BIOINFORMATICS/BTP301},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DupierrisMCKB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DurandCF09,
author = {Eric Durand and
Chibiao Chen and
Olivier Fran{\c{c}}ois},
title = {Comment on 'On the inference of spatial structure from population
genetics data'},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1802--1804},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp337},
doi = {10.1093/BIOINFORMATICS/BTP337},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DurandCF09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DutilhHS09,
author = {Bas E. Dutilh and
Martijn A. Huynen and
Marc Strous},
title = {Increasing the coverage of a metapopulation consensus genome by iterative
read mapping and assembly},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2878--2881},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp377},
doi = {10.1093/BIOINFORMATICS/BTP377},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DutilhHS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DvingeB09,
author = {Heidi Dvinge and
Paul Bertone},
title = {\emph{HTqPCR}: high-throughput analysis and visualization of quantitative
real-time {PCR} data in {R}},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3325--3326},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp578},
doi = {10.1093/BIOINFORMATICS/BTP578},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DvingeB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EastyN09,
author = {Richard Easty and
Nikolay Nikolov},
title = {Client-side integration of life science literature resources},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3194--3196},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp550},
doi = {10.1093/BIOINFORMATICS/BTP550},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EastyN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EavesG09,
author = {Hugh L. Eaves and
Yuan Gao},
title = {{MOM:} maximum oligonucleotide mapping},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {969--970},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp092},
doi = {10.1093/BIOINFORMATICS/BTP092},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EavesG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ElliottKCYMCWGOO09,
author = {Brendan Elliott and
Mustafa Kirac and
Ali Cakmak and
G{\"{o}}khan Yavas and
Stephen Mayes and
En Cheng and
Yuan Wang and
Chirag Gupta and
Gultekin {\"{O}}zsoyoglu and
Z. Meral {\"{O}}zsoyoglu},
title = {Corrigendum for Elliott, B. \emph{et al.}, 'PathCase pathways database
system', Bioinformatics 2008, 24(21) 2526-2533},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2773},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp520},
doi = {10.1093/BIOINFORMATICS/BTP520},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ElliottKCYMCWGOO09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EncinarFSHSBS09,
author = {Jos{\'{e}} A. Encinar and
G. Fernandez{-}Ballester and
Ignacio E. S{\'{a}}nchez and
E. Hurtado{-}Gomez and
Francois Stricher and
Pedro Beltr{\~{a}}o and
Luis Serrano},
title = {{ADAN:} a database for prediction of protein-protein interaction of
modular domains mediated by linear motifs},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2418--2424},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp424},
doi = {10.1093/BIOINFORMATICS/BTP424},
timestamp = {Tue, 14 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EncinarFSHSBS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Esteban-MarcosDR09,
author = {Andr{\'{e}}s Esteban{-}Marcos and
Aaron E. Darling and
Mark A. Ragan},
title = {Seevolution: visualizing chromosome evolution},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {960--961},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp096},
doi = {10.1093/BIOINFORMATICS/BTP096},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Esteban-MarcosDR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EstradaAGUKR09,
author = {Karol Estrada and
Anis Abuseiris and
Frank G. Grosveld and
Andr{\'{e}} G. Uitterlinden and
Tobias A. Knoch and
Fernando Rivadeneira},
title = {{GRIMP:} a web- and grid-based tool for high-speed analysis of large-scale
genome-wide association using imputed data},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2750--2752},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp497},
doi = {10.1093/BIOINFORMATICS/BTP497},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/EstradaAGUKR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FanMW09,
author = {Yue Fan and
Thomas Brendan Murphy and
R. William G. Watson},
title = {digeR: a graphical user interface {R} package for analyzing 2D-DIGE
data},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {3033--3034},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp514},
doi = {10.1093/BIOINFORMATICS/BTP514},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FanMW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FanZWL09,
author = {Liya Fan and
Fa Zhang and
Gongming Wang and
Zhiyong Liu},
title = {A framework to refine particle clusters produced by {EMAN}},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp219},
doi = {10.1093/BIOINFORMATICS/BTP219},
timestamp = {Thu, 19 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FanZWL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FaustCH09,
author = {Karoline Faust and
Didier Croes and
Jacques van Helden},
title = {In response to 'Can sugars be produced from fatty acids? {A} test
case for pathway analysis tools'},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3202--3205},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp557},
doi = {10.1093/BIOINFORMATICS/BTP557},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FaustCH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FeldhahnDTK09,
author = {Magdalena Feldhahn and
Pierre D{\"{o}}nnes and
Philipp Thiel and
Oliver Kohlbacher},
title = {{FRED} - a framework for T-cell epitope detection},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2758--2759},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp409},
doi = {10.1093/BIOINFORMATICS/BTP409},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FeldhahnDTK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FerreiraP09,
author = {Manuel A. R. Ferreira and
Shaun Purcell},
title = {A multivariate test of association},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {132--133},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn563},
doi = {10.1093/BIOINFORMATICS/BTN563},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FerreiraP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FevreSCDdS09,
author = {Fran{\c{c}}ois Le F{\`{e}}vre and
Serge Smidtas and
Cyril Combe and
Maxime Durot and
Florence d'Alch{\'{e}}{-}Buc and
Vincent Sch{\"{a}}chter},
title = {CycSim - an online tool for exploring and experimenting with genome-scale
metabolic models},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1987--1988},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp268},
doi = {10.1093/BIOINFORMATICS/BTP268},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FevreSCDdS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FigueiredoPRKBSP09,
author = {Luis F. de Figueiredo and
Adam Podhorski and
Angel Rubio and
Christoph Kaleta and
John E. Beasley and
Stefan Schuster and
Francisco J. Planes},
title = {Computing the shortest elementary flux modes in genome-scale metabolic
networks},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3158--3165},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp564},
doi = {10.1093/BIOINFORMATICS/BTP564},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FigueiredoPRKBSP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FigueiredoSKF09,
author = {Luis F. de Figueiredo and
Stefan Schuster and
Christoph Kaleta and
David A. Fell},
title = {Can sugars be produced from fatty acids? {A} test case for pathway
analysis tools},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {152--158},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn621},
doi = {10.1093/BIOINFORMATICS/BTN621},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FigueiredoSKF09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FigueiredoSKF09a,
author = {Luis F. de Figueiredo and
Stefan Schuster and
Christoph Kaleta and
David A. Fell},
title = {Response to comment on 'Can sugars be produced from fatty acids? {A}
test case for pathway analysis tools'},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3330--3331},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp591},
doi = {10.1093/BIOINFORMATICS/BTP591},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FigueiredoSKF09a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Filatov09,
author = {Dmitry A. Filatov},
title = {Processing and population genetic analysis of multigenic datasets
with ProSeq3 software},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3189--3190},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp572},
doi = {10.1093/BIOINFORMATICS/BTP572},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Filatov09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FitchJ09,
author = {A. Marie Fitch and
M. Beatrix Jones},
title = {Shortest path analysis using partial correlations for classifying
gene functions from gene expression data},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {42--47},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn574},
doi = {10.1093/BIOINFORMATICS/BTN574},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FitchJ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FoberMKH09,
author = {Thomas Fober and
Marco Mernberger and
Gerhard Klebe and
Eyke H{\"{u}}llermeier},
title = {Evolutionary construction of multiple graph alignments for the structural
analysis of biomolecules},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2110--2117},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp144},
doi = {10.1093/BIOINFORMATICS/BTP144},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FoberMKH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FolkersenDWHGEG09,
author = {Lasse Folkersen and
Diego Diez and
Craig E. Wheelock and
Jesper Z. Haeggstr{\"{o}}m and
Susumu Goto and
Per Eriksson and
Anders Gabrielsen},
title = {GeneRegionScan: a Bioconductor package for probe-level analysis of
specific, small regions of the genome},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1978--1979},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp279},
doi = {10.1093/BIOINFORMATICS/BTP279},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FolkersenDWHGEG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FongM09,
author = {Jessica H. Fong and
Aron Marchler{-}Bauer},
title = {{CORAL:} aligning conserved core regions across domain families},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1862--1868},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp334},
doi = {10.1093/BIOINFORMATICS/BTP334},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FongM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FornesAEMSO09,
author = {Oriol Fornes and
Ramon Aragues and
Jordi Espadaler and
Marc A. Mart{\'{\i}}{-}Renom and
Andrej Sali and
Baldo Oliva},
title = {ModLink+: improving fold recognition by using protein-protein interactions},
journal = {Bioinform.},
volume = {25},
number = {12},
pages = {1506--1512},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp238},
doi = {10.1093/BIOINFORMATICS/BTP238},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FornesAEMSO09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ForslundS09,
author = {Kristoffer Forslund and
Erik L. L. Sonnhammer},
title = {Predicting protein function from domain content},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1214},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp186},
doi = {10.1093/BIOINFORMATICS/BTP186},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ForslundS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ForslundS09a,
author = {Kristoffer Forslund and
Erik L. L. Sonnhammer},
title = {Benchmarking homology detection procedures with low complexity filters},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2500--2505},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp446},
doi = {10.1093/BIOINFORMATICS/BTP446},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ForslundS09a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FrenchLLXP09,
author = {Leon French and
Suzanne Lane and
Tamryn Law and
Lydia Xu and
Paul Pavlidis},
title = {Application and evaluation of automated semantic annotation of gene
expression experiments},
journal = {Bioinform.},
volume = {25},
number = {12},
pages = {1543--1549},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp259},
doi = {10.1093/BIOINFORMATICS/BTP259},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FrenchLLXP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FriedelNSW09,
author = {Maik Friedel and
Swetlana Nikolajewa and
J{\"{u}}rgen S{\"{u}}hnel and
Thomas Wilhelm},
title = {DiProGB: the dinucleotide properties genome browser},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2603--2604},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp436},
doi = {10.1093/BIOINFORMATICS/BTP436},
timestamp = {Tue, 01 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FriedelNSW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FriedelZ09,
author = {Caroline C. Friedel and
Ralf Zimmer},
title = {Identifying the topology of protein complexes from affinity purification
assays},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2140--2146},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp353},
doi = {10.1093/BIOINFORMATICS/BTP353},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FriedelZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FuRX09,
author = {Wenjie Fu and
Pradipta Ray and
Eric P. Xing},
title = {{DISCOVER:} a feature-based discriminative method for motif search
in complex genomes},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp230},
doi = {10.1093/BIOINFORMATICS/BTP230},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FuRX09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FurusawaOSASY09,
author = {Chikara Furusawa and
Naoaki Ono and
Shingo Suzuki and
Tomoharu Agata and
Hiroshi Shimizu and
Tetsuya Yomo},
title = {Model-based analysis of non-specific binding for background correction
of high-density oligonucleotide microarrays},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {36--41},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn570},
doi = {10.1093/BIOINFORMATICS/BTN570},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FurusawaOSASY09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GanGZ09,
author = {Yanglan Gan and
Jihong Guan and
Shuigeng Zhou},
title = {A pattern-based nearest neighbor search approach for promoter prediction
using {DNA} structural profiles},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2006--2012},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp359},
doi = {10.1093/BIOINFORMATICS/BTP359},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GanGZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaoATWMJS09,
author = {Jing Gao and
Alexander S. Ade and
V. Glenn Tarcea and
Terry E. Weymouth and
Barbara R. Mirel and
H. V. Jagadish and
David J. States},
title = {Integrating and annotating the interactome using the MiMI plugin for
cytoscape},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {137--138},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn501},
doi = {10.1093/BIOINFORMATICS/BTN501},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaoATWMJS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GarberGCZFX09,
author = {Manuel Garber and
Mitchell Guttman and
Michele E. Clamp and
Michael C. Zody and
Nir Friedman and
Xiaohui Xie},
title = {Identifying novel constrained elements by exploiting biased substitution
patterns},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp190},
doi = {10.1093/BIOINFORMATICS/BTP190},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GarberGCZFX09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GargMCMX09,
author = {Abhishek Garg and
Kartik Mohanram and
Alessandro Di Cara and
Giovanni De Micheli and
Ioannis Xenarios},
title = {Modeling stochasticity and robustness in gene regulatory networks},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp214},
doi = {10.1093/BIOINFORMATICS/BTP214},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GargMCMX09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GarzonLPKAFC09,
author = {Jos{\'{e}} Ignacio Garz{\'{o}}n and
Jos{\'{e}} Ram{\'{o}}n L{\'{o}}pez{-}Blanco and
Carles Pons and
Julio A. Kovacs and
Ruben Abagyan and
Juan Fern{\'{a}}ndez{-}Recio and
Pablo Chac{\'{o}}n},
title = {{FRODOCK:} a new approach for fast rotational protein-protein docking},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2544--2551},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp447},
doi = {10.1093/BIOINFORMATICS/BTP447},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GarzonLPKAFC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GattiSLWRN09,
author = {Daniel M. Gatti and
Andrey A. Shabalin and
Tieu{-}Chong Lam and
Fred A. Wright and
Ivan Rusyn and
Andrew B. Nobel},
title = {FastMap: Fast eQTL mapping in homozygous populations},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {482--489},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn648},
doi = {10.1093/BIOINFORMATICS/BTN648},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GattiSLWRN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GattiSRWB09,
author = {Daniel M. Gatti and
Myroslav Sypa and
Ivan Rusyn and
Fred A. Wright and
William T. Barry},
title = {{SAFEGUI:} resampling-based tests of categorical significance in gene
expression data made easy},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {541--542},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn655},
doi = {10.1093/BIOINFORMATICS/BTN655},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GattiSRWB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GeeleherMHG09,
author = {Paul Geeleher and
Dermot Morris and
John P. Hinde and
Aaron Golden},
title = {BioconductorBuntu: a Linux distribution that implements a web-based
{DNA} microarray analysis server},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1438--1439},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp165},
doi = {10.1093/BIOINFORMATICS/BTP165},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GeeleherMHG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GehlenborgYLYNHAH09,
author = {Nils Gehlenborg and
Wei Yan and
Inyoul Y. Lee and
Hyuntae Yoo and
Kay Nieselt and
Daehee Hwang and
Ruedi Aebersold and
Leroy Hood},
title = {Prequips - an extensible software platform for integration, visualization
and analysis of {LC-MS/MS} proteomics data},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {682--683},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp005},
doi = {10.1093/BIOINFORMATICS/BTP005},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GehlenborgYLYNHAH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GeigerMW09,
author = {Dan Geiger and
Christopher Meek and
Ydo Wexler},
title = {Speeding up {HMM} algorithms for genetic linkage analysis via chain
reductions of the state space},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp224},
doi = {10.1093/BIOINFORMATICS/BTP224},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GeigerMW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GellertUB09,
author = {Pascal Gellert and
Shizuka Uchida and
Thomas Braun},
title = {Exon Array Analyzer: a web interface for Affymetrix exon array analysis},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3323--3324},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp577},
doi = {10.1093/BIOINFORMATICS/BTP577},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GellertUB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GennemarkW09,
author = {Peter Gennemark and
Dag Wedelin},
title = {Benchmarks for identification of ordinary differential equations from
time series data},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {780--786},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp050},
doi = {10.1093/BIOINFORMATICS/BTP050},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GennemarkW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GeorgiiDUPT09,
author = {Elisabeth Georgii and
Sabine Dietmann and
Takeaki Uno and
Philipp Pagel and
Koji Tsuda},
title = {Enumeration of condition-dependent dense modules in protein interaction
networks},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {933--940},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp080},
doi = {10.1093/BIOINFORMATICS/BTP080},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GeorgiiDUPT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GerleeLS09,
author = {Philip Gerlee and
L. Lizana and
Kim Sneppen},
title = {Pathway identification by network pruning in the metabolic network
of \emph{Escherichia coli}},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3282--3288},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp575},
doi = {10.1093/BIOINFORMATICS/BTP575},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GerleeLS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GerstungBMB09,
author = {Moritz Gerstung and
Michael Baudis and
Holger Moch and
Niko Beerenwinkel},
title = {Quantifying cancer progression with conjunctive Bayesian networks},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2809--2815},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp505},
doi = {10.1093/BIOINFORMATICS/BTP505},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GerstungBMB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GertheissT09,
author = {Jan Gertheiss and
Gerhard Tutz},
title = {Supervised feature selection in mass spectrometry-based proteomic
profiling by blockwise boosting},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {1076--1077},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp094},
doi = {10.1093/BIOINFORMATICS/BTP094},
timestamp = {Wed, 09 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GertheissT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GhersiS09,
author = {Dario Ghersi and
Roberto Sanchez},
title = {{EASYMIFS} and {SITEHOUND:} a toolkit for the identification of ligand-binding
sites in protein structures},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3185--3186},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp562},
doi = {10.1093/BIOINFORMATICS/BTP562},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GhersiS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GiancarloSU09,
author = {Raffaele Giancarlo and
Davide Scaturro and
Filippo Utro},
title = {Textual data compression in computational biology: a synopsis},
journal = {Bioinform.},
volume = {25},
number = {13},
pages = {1575--1586},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp117},
doi = {10.1093/BIOINFORMATICS/BTP117},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GiancarloSU09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GiffordLRKHPS09,
author = {Robert J. Gifford and
Tommy F. Liu and
Soo{-}Yon Rhee and
Mark Kiuchi and
St{\'{e}}phane Hu{\'{e}} and
Deenan Pillay and
Robert W. Shafer},
title = {The calibrated population resistance tool: standardized genotypic
estimation of transmitted {HIV-1} drug resistance},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1197--1198},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp134},
doi = {10.1093/BIOINFORMATICS/BTP134},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GiffordLRKHPS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GilbertR09,
author = {Don Gilbert and
Andreas Rechtsteiner},
title = {Comments on sequence normalization of tiling array expression},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2171--2173},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp389},
doi = {10.1093/BIOINFORMATICS/BTP389},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GilbertR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GilestroC09,
author = {Giorgio F. Gilestro and
Chiara Cirelli},
title = {pySolo: a complete suite for sleep analysis in \emph{Drosophila}},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1466--1467},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp237},
doi = {10.1093/BIOINFORMATICS/BTP237},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GilestroC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GiovanniniZBCB09,
author = {Ambra Giovannini and
Gaetano Zanghirati and
Mark A. Beaumont and
Loun{\`{e}}s Chikhi and
Guido Barbujani},
title = {A novel parallel approach to the likelihood-based estimation of admixture
in population genetics},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1440--1441},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp136},
doi = {10.1093/BIOINFORMATICS/BTP136},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GiovanniniZBCB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GlazkoE09,
author = {Galina V. Glazko and
Frank Emmert{-}Streib},
title = {Unite and conquer: univariate and multivariate approaches for finding
differentially expressed gene sets},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2348--2354},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp406},
doi = {10.1093/BIOINFORMATICS/BTP406},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GlazkoE09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GoldML09,
author = {David L. Gold and
Jeffrey C. Miecznikowski and
Song Liu},
title = {Error control variability in pathway-based microarray analysis},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2216--2221},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp385},
doi = {10.1093/BIOINFORMATICS/BTP385},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GoldML09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GoldbergBNHD09,
author = {David Goldberg and
Marshall W. Bern and
Simon J. North and
Stuart M. Haslam and
Anne Dell},
title = {Glycan family analysis for deducing \emph{N}-glycan topology from
single {MS}},
journal = {Bioinform.},
volume = {25},
number = {3},
pages = {365--371},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn636},
doi = {10.1093/BIOINFORMATICS/BTN636},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GoldbergBNHD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GolfierLMBRCP09,
author = {G. Golfier and
Sophie Lemoine and
A. van Miltenberg and
A. Bendjoudi and
J. Rossier and
St{\'{e}}phane Le Crom and
Marie{-}Claude Potier},
title = {Selection of oligonucleotides for whole-genome microarrays with semi-automatic
update},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {128--129},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn573},
doi = {10.1093/BIOINFORMATICS/BTN573},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GolfierLMBRCP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Gouveia-OliveiraRWSSMP09,
author = {Rodrigo Gouveia{-}Oliveira and
Francisco S. Roque and
Rasmus Wernersson and
Thomas Sicheritz{-}Pont{\'{e}}n and
Peter Wad Sackett and
Anne M{\o}lgaard and
Anders Gorm Pedersen},
title = {InterMap3D: predicting and visualizing co-evolving protein residues},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1963--1965},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp335},
doi = {10.1093/BIOINFORMATICS/BTP335},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Gouveia-OliveiraRWSSMP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GouzyCS09,
author = {J{\'{e}}r{\^{o}}me Gouzy and
S{\'{e}}bastien Carr{\`{e}}re and
Thomas Schiex},
title = {FrameDP: sensitive peptide detection on noisy matured sequences},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {670--671},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp024},
doi = {10.1093/BIOINFORMATICS/BTP024},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GouzyCS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Grafahrend-BelauKJS09,
author = {Eva Grafahrend{-}Belau and
Christian Klukas and
Bj{\"{o}}rn H. Junker and
Falk Schreiber},
title = {FBA-SimVis: interactive visualization of constraint-based metabolic
models},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2755--2757},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp408},
doi = {10.1093/BIOINFORMATICS/BTP408},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Grafahrend-BelauKJS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrootBWVRR09,
author = {Marco J. L. de Groot and
Rogier J. P. van Berlo and
Wouter A. van Winden and
Peter J. T. Verheijen and
Marcel J. T. Reinders and
Dick de Ridder},
title = {Metabolite and reaction inference based on enzyme specificities},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {2975--2982},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp507},
doi = {10.1093/BIOINFORMATICS/BTP507},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrootBWVRR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Guillot09,
author = {Gilles Guillot},
title = {On the inference of spatial structure from population genetics data},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1796--1801},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp267},
doi = {10.1093/BIOINFORMATICS/BTP267},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Guillot09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Guillot09a,
author = {Gilles Guillot},
title = {Response to comment on 'On the inference of spatial structure from
population genetics data'},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1805--1806},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp351},
doi = {10.1093/BIOINFORMATICS/BTP351},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Guillot09a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuillotF09,
author = {Gilles Guillot and
Matthieu Foll},
title = {Correcting for ascertainment bias in the inference of population structure},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {552--554},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn665},
doi = {10.1093/BIOINFORMATICS/BTN665},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuillotF09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuoH09,
author = {Xin Guo and
Alexander J. Hartemink},
title = {Domain-oriented edge-based alignment of protein interaction networks},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp202},
doi = {10.1093/BIOINFORMATICS/BTP202},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuoH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuoLGYMWLZZYW09,
author = {Zheng Guo and
Lei Wang and
Yongjin Li and
Xue Gong and
Chen Yao and
Wencai Ma and
Dong Wang and
Yanhui Li and
Jing Zhu and
Min Zhang and
Da Yang and
Shaoqi Rao and
Jing Wang},
title = {Edge-based scoring and searching method for identifying condition-responsive
protein-protein interaction sub-network},
journal = {Bioinform.},
volume = {25},
number = {12},
pages = {1574},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp308},
doi = {10.1093/BIOINFORMATICS/BTP308},
timestamp = {Tue, 12 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuoLGYMWLZZYW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuoRAB09,
author = {Yongjian Guo and
Jose M. C. Ribeiro and
Jennifer M. Anderson and
Stephan Bour},
title = {dCAS: a desktop application for cDNA sequence annotation},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1195--1196},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp129},
doi = {10.1093/BIOINFORMATICS/BTP129},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuoRAB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuralnickH09,
author = {Robert P. Guralnick and
Andrew W. Hill},
title = {Biodiversity informatics: automated approaches for documenting global
biodiversity patterns and processes},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {421--428},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn659},
doi = {10.1093/BIOINFORMATICS/BTN659},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuralnickH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GusfieldT09,
author = {Dan Gusfield and
Anna Tramontano},
title = {Editorial},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp234},
doi = {10.1093/BIOINFORMATICS/BTP234},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GusfieldT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HacheWLH09,
author = {Hendrik Hache and
Christoph K. Wierling and
Hans Lehrach and
Ralf Herwig},
title = {GeNGe: systematic generation of gene regulatory networks},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1205--1207},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp115},
doi = {10.1093/BIOINFORMATICS/BTP115},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HacheWLH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HachiyaOPS09,
author = {Tsuyoshi Hachiya and
Yasunori Osana and
Kris Popendorf and
Yasubumi Sakakibara},
title = {Accurate identification of orthologous segments among multiple genomes},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {853--860},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp070},
doi = {10.1093/BIOINFORMATICS/BTP070},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HachiyaOPS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HachiyaOPS09a,
author = {Tsuyoshi Hachiya and
Yasunori Osana and
Kris Popendorf and
Yasubumi Sakakibara},
title = {Accurate identification of orthologous segments among multiple genomes},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1474},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp263},
doi = {10.1093/BIOINFORMATICS/BTP263},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HachiyaOPS09a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HallMLS09,
author = {Brandon M. Hall and
Chang{-}Xing Ma and
Ping Liang and
Keshav K. Singh},
title = {Fluctuation AnaLysis CalculatOR: a web tool for the determination
of mutation rate using Luria-Delbr{\"{u}}ck fluctuation analysis},
journal = {Bioinform.},
volume = {25},
number = {12},
pages = {1564--1565},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp253},
doi = {10.1093/BIOINFORMATICS/BTP253},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HallMLS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HamadaKSMA09,
author = {Michiaki Hamada and
Hisanori Kiryu and
Kengo Sato and
Toutai Mituyama and
Kiyoshi Asai},
title = {Prediction of {RNA} secondary structure using generalized centroid
estimators},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {465--473},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn601},
doi = {10.1093/BIOINFORMATICS/BTN601},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HamadaKSMA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HamadaSKMA09,
author = {Michiaki Hamada and
Kengo Sato and
Hisanori Kiryu and
Toutai Mituyama and
Kiyoshi Asai},
title = {Predictions of {RNA} secondary structure by combining homologous sequence
information},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp228},
doi = {10.1093/BIOINFORMATICS/BTP228},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HamadaSKMA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HamadaSKMA09a,
author = {Michiaki Hamada and
Kengo Sato and
Hisanori Kiryu and
Toutai Mituyama and
Kiyoshi Asai},
title = {CentroidAlign: fast and accurate aligner for structured RNAs by maximizing
expected sum-of-pairs score},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3236--3243},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp580},
doi = {10.1093/BIOINFORMATICS/BTP580},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HamadaSKMA09a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HamadyWZSK09,
author = {Micah Hamady and
Stephanie A. Wilson and
Jesse Zaneveld and
Noboru Sueoka and
Rob Knight},
title = {CodonExplorer: an online tool for analyzing codon usage and sequence
composition, scaling from genes to genomes},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1331--1332},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp141},
doi = {10.1093/BIOINFORMATICS/BTP141},
timestamp = {Sun, 28 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HamadyWZSK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HanWB09,
author = {Lianyi Han and
Yanli Wang and
Stephen H. Bryant},
title = {A survey of across-target bioactivity results of small molecules in
PubChem},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2251--2255},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp380},
doi = {10.1093/BIOINFORMATICS/BTP380},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HanWB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HandlKL09,
author = {Julia Handl and
Joshua D. Knowles and
Simon C. Lovell},
title = {Artefacts and biases affecting the evaluation of scoring functions
on decoy sets for protein structure prediction},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1271--1279},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp150},
doi = {10.1093/BIOINFORMATICS/BTP150},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HandlKL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaqueGKM09,
author = {Mohammed Monzoorul Haque and
Tarini Shankar Ghosh and
Dinakar Komanduri and
Sharmila S. Mande},
title = {SOrt-ITEMS: Sequence orthology based approach for improved taxonomic
estimation of metagenomic sequences},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1722--1730},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp317},
doi = {10.1093/BIOINFORMATICS/BTP317},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HaqueGKM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HashimotoHGDHF09,
author = {Takehiro Hashimoto and
Michiel J. L. de Hoon and
Sean M. Grimmond and
Carsten O. Daub and
Yoshihide Hayashizaki and
Geoffrey J. Faulkner},
title = {Probabilistic resolution of multi-mapping reads in massively parallel
sequencing data using MuMRescueLite},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2613--2614},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp438},
doi = {10.1093/BIOINFORMATICS/BTP438},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HashimotoHGDHF09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HawkinsGNB09,
author = {John Hawkins and
Charles E. Grant and
William Stafford Noble and
Timothy L. Bailey},
title = {Assessing phylogenetic motif models for predicting transcription factor
binding sites},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp201},
doi = {10.1093/BIOINFORMATICS/BTP201},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HawkinsGNB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaynesB09,
author = {Brian C. Haynes and
Michael R. Brent},
title = {Benchmarking regulatory network reconstruction with {GRENDEL}},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {801--807},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp068},
doi = {10.1093/BIOINFORMATICS/BTP068},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HaynesB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HazelettLW09,
author = {Dennis J. Hazelett and
Daniel L. Lakeland and
Joseph B. Weiss},
title = {Affinity Density: a novel genomic approach to the identification of
transcription factor regulatory targets},
journal = {Bioinform.},
volume = {25},
number = {13},
pages = {1617--1624},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp282},
doi = {10.1093/BIOINFORMATICS/BTP282},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HazelettLW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeLZDZL09,
author = {Kun He and
Xueyong Li and
Junli Zhou and
Xingwang Deng and
Hongyu Zhao and
Jingchu Luo},
title = {{NTAP:} for NimbleGen tiling array ChIP-chip data analysis},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1838--1840},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp320},
doi = {10.1093/BIOINFORMATICS/BTP320},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeLZDZL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeY09,
author = {Zengyou He and
Weichuan Yu},
title = {Improving peptide identification with single-stage mass spectrum peaks},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {2969--2974},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp501},
doi = {10.1093/BIOINFORMATICS/BTP501},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeY09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeardKG09,
author = {Jeff Heard and
William Kaufmann and
Xiaojun Guan},
title = {A novel method for large tree visualization},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {557--558},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn656},
doi = {10.1093/BIOINFORMATICS/BTN656},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeardKG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HellerMGE09,
author = {Ruth Heller and
Elisabetta Manduchi and
Gregory R. Grant and
Warren J. Ewens},
title = {A flexible two-stage procedure for identifying gene sets that are
differentially expressed},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {1019--1025},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp076},
doi = {10.1093/BIOINFORMATICS/BTP076},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HellerMGE09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HellerMS09,
author = {Ruth Heller and
Elisabetta Manduchi and
Dylan S. Small},
title = {Matching methods for observational microarray studies},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {904--909},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn650},
doi = {10.1093/BIOINFORMATICS/BTN650},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HellerMS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Hernandez-SanchezGK09,
author = {Jules Hern{\'{a}}ndez{-}S{\'{a}}nchez and
Jean{-}Alain Grunchec and
Sara Knott},
title = {A web application to perform linkage disequilibrium and linkage analyses
on a computational grid},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1377--1383},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp171},
doi = {10.1093/BIOINFORMATICS/BTP171},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Hernandez-SanchezGK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeroldB09,
author = {Christine Herold and
Tim Becker},
title = {Genetic association analysis with {FAMHAP:} a major program update},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {134--136},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn581},
doi = {10.1093/BIOINFORMATICS/BTN581},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeroldB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeroldSBBB09,
author = {Christine Herold and
Michael Steffens and
Felix F. Brockschmidt and
Max P. Baur and
Tim Becker},
title = {{INTERSNP:} genome-wide interaction analysis guided by a priori information},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3275--3281},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp596},
doi = {10.1093/BIOINFORMATICS/BTP596},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeroldSBBB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HerrmannBT09,
author = {Carl Herrmann and
S{\`{e}}verine B{\'{e}}rard and
Laurent Tichit},
title = {SimCT: a generic tool to visualize ontology-based relationships for
biological objects},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3197--3198},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp553},
doi = {10.1093/BIOINFORMATICS/BTP553},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HerrmannBT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HettneSSHSMKK09,
author = {Kristina M. Hettne and
Rob H. Stierum and
Martijn J. Schuemie and
Peter J. M. Hendriksen and
Bob J. A. Schijvenaars and
Erik M. van Mulligen and
Jos Kleinjans and
Jan A. Kors},
title = {A dictionary to identify small molecules and drugs in free text},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {2983--2991},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp535},
doi = {10.1093/BIOINFORMATICS/BTP535},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HettneSSHSMKK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeyneWBB09,
author = {Steffen Heyne and
Sebastian Will and
Michael Beckstette and
Rolf Backofen},
title = {Lightweight comparison of RNAs based on exact sequence-structure matches},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2095--2102},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp065},
doi = {10.1093/BIOINFORMATICS/BTP065},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeyneWBB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HillerJXW09,
author = {David Hiller and
Hui Jiang and
Weihong Xu and
Wing Hung Wong},
title = {Identifiability of isoform deconvolution from junction arrays and
RNA-Seq},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3056--3059},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp544},
doi = {10.1093/BIOINFORMATICS/BTP544},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HillerJXW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HimmelmannM09,
author = {Lin Himmelmann and
Dirk Metzler},
title = {TreeTime: an extensible {C++} software package for Bayesian phylogeny
reconstruction with time-calibration},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2440--2441},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp417},
doi = {10.1093/BIOINFORMATICS/BTP417},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HimmelmannM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HoffmannS09,
author = {Nils Hoffmann and
Jens Stoye},
title = {ChromA: signal-based retention time alignment for chromatography-mass
spectrometry data},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2080--2081},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp343},
doi = {10.1093/BIOINFORMATICS/BTP343},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HoffmannS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HoltTLNDWP09,
author = {Kathryn E. Holt and
Yik Y. Teo and
Heng Li and
Satheesh Nair and
Gordon Dougan and
John Wain and
Julian Parkhill},
title = {Detecting SNPs and estimating allele frequencies in clonal bacterial
populations by sequencing pooled {DNA}},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2074--2075},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp344},
doi = {10.1093/BIOINFORMATICS/BTP344},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HoltTLNDWP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HomannFGR09,
author = {Robert Homann and
David Fleer and
Robert Giegerich and
Marc Rehmsmeier},
title = {\emph{mkESA}: enhanced suffix array construction tool},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {1084--1085},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp112},
doi = {10.1093/BIOINFORMATICS/BTP112},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HomannFGR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HorlerBPAT09,
author = {Richard S. P. Horler and
Andrew Butcher and
Nikitas Papangelopoulos and
Peter D. Ashton and
Gavin H. Thomas},
title = {\emph{Echo}LOCATION: an \emph{in silico} analysis of the subcellular
locations of \emph{Escherichia coli} proteins and comparison with
experimentally derived locations},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {163--166},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn596},
doi = {10.1093/BIOINFORMATICS/BTN596},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HorlerBPAT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HousemanCKWNWZWKM09,
author = {Eugene Andres Houseman and
Brock C. Christensen and
Margaret R. Karagas and
Margaret R. Wrensch and
Heather H. Nelson and
Joseph Wiemels and
Shichun Zheng and
John K. Wiencke and
Karl T. Kelsey and
Carmen J. Marsit},
title = {Copy number variation has little impact on bead-array-based measures
of {DNA} methylation},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {1999--2005},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp364},
doi = {10.1093/BIOINFORMATICS/BTP364},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HousemanCKWNWZWKM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuFFPH09,
author = {Bin Hu and
G. Matthew Fricke and
James R. Faeder and
Richard G. Posner and
William S. Hlavacek},
title = {GetBonNie for building, analyzing and sharing rule-based models},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1457--1460},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp173},
doi = {10.1093/BIOINFORMATICS/BTP173},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuFFPH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuGLZ09,
author = {Gang{-}Qing Hu and
Jiangtao Guo and
Yongchu Liu and
Huaiqiu Zhu},
title = {MetaTISA: Metagenomic Translation Initiation Site Annotator for improving
gene start prediction},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1843--1845},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp272},
doi = {10.1093/BIOINFORMATICS/BTP272},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuGLZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuZZS09,
author = {Gang{-}Qing Hu and
Xiaobin Zheng and
Huaiqiu Zhu and
Zhen{-}Su She},
title = {Prediction of translation initiation site for microbial genomes with
TriTISA},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {123--125},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn576},
doi = {10.1093/BIOINFORMATICS/BTN576},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuZZS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangB09,
author = {Hailiang Huang and
Joel S. Bader},
title = {Precision and recall estimates for two-hybrid screens},
journal = {Bioinform.},
volume = {25},
number = {3},
pages = {372--378},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn640},
doi = {10.1093/BIOINFORMATICS/BTN640},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangG09,
author = {Liang{-}Tsung Huang and
M. Michael Gromiha},
title = {Reliable prediction of protein thermostability change upon double
mutation from amino acid sequence},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2181--2187},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp370},
doi = {10.1093/BIOINFORMATICS/BTP370},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangGL09,
author = {Ying Huang and
Paul Gilna and
Weizhong Li},
title = {Identification of ribosomal {RNA} genes in metagenomic fragments},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1338--1340},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp161},
doi = {10.1093/BIOINFORMATICS/BTP161},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangGL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangQRS09,
author = {Fenix W. D. Huang and
Jing Qin and
Christian M. Reidys and
Peter F. Stadler},
title = {Partition function and base pairing probabilities for {RNA-RNA} interaction
prediction},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2646--2654},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp481},
doi = {10.1093/BIOINFORMATICS/BTP481},
timestamp = {Thu, 21 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangQRS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangWFP09,
author = {Yang Huang and
Stefan Wuchty and
Michael T. Ferdig and
Teresa M. Przytycka},
title = {Graph theoretical approach to study eQTL: a case study of \emph{Plasmodium
falciparum}},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp189},
doi = {10.1093/BIOINFORMATICS/BTP189},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangWFP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HundertmarkFRMKJ09,
author = {Claudia Hundertmark and
R. Fischer and
Tobias Reinl and
Sigrun May and
Frank Klawonn and
Lothar J{\"{a}}nsch},
title = {MS-specific noise model reveals the potential of iTRAQ in quantitative
proteomics},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {1004--1011},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn551},
doi = {10.1093/BIOINFORMATICS/BTN551},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HundertmarkFRMKJ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HurSSF09,
author = {Junguk Hur and
Adam D. Schuyler and
David J. States and
Eva L. Feldman},
title = {SciMiner: web-based literature mining tool for target identification
and functional enrichment analysis},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {838--840},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp049},
doi = {10.1093/BIOINFORMATICS/BTP049},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HurSSF09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HusonRBGP09,
author = {Daniel H. Huson and
Regula Rupp and
Vincent Berry and
Philippe Gambette and
Christophe Paul},
title = {Computing galled networks from real data},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp217},
doi = {10.1093/BIOINFORMATICS/BTP217},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HusonRBGP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HussongGTH09,
author = {Rene Hussong and
Barbara Gregorius and
Andreas Tholey and
Andreas Hildebrandt},
title = {Highly accelerated feature detection in proteomics data sets using
modern graphics processing units},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1937--1943},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp294},
doi = {10.1093/BIOINFORMATICS/BTP294},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HussongGTH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuttenhowerHMCHT09,
author = {Curtis Huttenhower and
Matthew A. Hibbs and
Chad L. Myers and
Amy A. Caudy and
David C. Hess and
Olga G. Troyanskaya},
title = {The impact of incomplete knowledge on evaluation: an experimental
benchmark for protein function prediction},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2404--2410},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp397},
doi = {10.1093/BIOINFORMATICS/BTP397},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuttenhowerHMCHT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuttenhowerMIYSFTC09,
author = {Curtis Huttenhower and
K. Tsheko Mutungu and
Natasha Indik and
Woongcheol Yang and
Mark Schroeder and
Joshua J. Forman and
Olga G. Troyanskaya and
Hilary A. Coller},
title = {Detailing regulatory networks through large scale data integration},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3267--3274},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp588},
doi = {10.1093/BIOINFORMATICS/BTP588},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuttenhowerMIYSFTC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IbanezLB09,
author = {Alfonso Ib{\'{a}}{\~{n}}ez and
Pedro Larra{\~{n}}aga and
Concha Bielza},
title = {Predicting citation count of \emph{Bioinformatics} papers within four
years of publication},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3303--3309},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp585},
doi = {10.1093/BIOINFORMATICS/BTP585},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IbanezLB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IlieI09,
author = {Lucian Ilie and
Silvana Ilie},
title = {Fast computation of neighbor seeds},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {822--823},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp054},
doi = {10.1093/BIOINFORMATICS/BTP054},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/IlieI09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IshiwataMOT09,
author = {Ryosuke R. Ishiwata and
Masaki S. Morioka and
Soichi Ogishima and
Hiroshi Tanaka},
title = {BioCichlid: central dogma-based 3D visualization system of time-course
microarray data on a hierarchical biological network},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {543--544},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp008},
doi = {10.1093/BIOINFORMATICS/BTP008},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IshiwataMOT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ItohW09,
author = {Masumi Itoh and
Hidemi Watanabe},
title = {{CGAS:} comparative genomic analysis server},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {958--959},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp086},
doi = {10.1093/BIOINFORMATICS/BTP086},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ItohW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JagerSC09,
author = {Stefan J{\"{a}}ger and
Qingfeng Song and
Su{-}Shing Chen},
title = {{DYNAMIK:} a software environment for cell DYNAmics, Motility, and
Information tracKing, with an application to Ras pathways},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2383--2388},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp405},
doi = {10.1093/BIOINFORMATICS/BTP405},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JagerSC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Jakobsson09,
author = {Mattias Jakobsson},
title = {\emph{COMPASS}: a program for generating serial samples under an infinite
sites model},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2845--2847},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp534},
doi = {10.1093/BIOINFORMATICS/BTP534},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Jakobsson09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiangW09,
author = {Hui Jiang and
Wing Hung Wong},
title = {Statistical inferences for isoform expression in RNA-Seq},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {1026--1032},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp113},
doi = {10.1093/BIOINFORMATICS/BTP113},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JiangW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Jimenez-LozanoSMVC09,
author = {Natalia Jim{\'{e}}nez{-}Lozano and
Joan Segura and
Jos{\'{e}} Ram{\'{o}}n Mac{\'{\i}}as and
Juanjo Vega and
Jos{\'{e}} Mar{\'{\i}}a Carazo},
title = {aGEM: an integrative system for analyzing spatial-temporal gene-expression
information},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2566--2572},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp422},
doi = {10.1093/BIOINFORMATICS/BTP422},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Jimenez-LozanoSMVC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JinANF09,
author = {Victor X. Jin and
Jeff Apostolos and
Naga Satya Venkateswara Ra Nagisetty and
Peggy J. Farnham},
title = {W-ChIPMotifs: a web application tool for \emph{de novo} motif discovery
from ChIP-based high-throughput data},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3191--3193},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp570},
doi = {10.1093/BIOINFORMATICS/BTP570},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JinANF09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JonikasRA09,
author = {Magdalena A. Jonikas and
Randall J. Radmer and
Russ B. Altman},
title = {Knowledge-based instantiation of full atomic detail into coarse-grain
{RNA} 3D structural models},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3259--3266},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp576},
doi = {10.1093/BIOINFORMATICS/BTP576},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JonikasRA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JordaK09,
author = {Julien Jorda and
Andrey V. Kajava},
title = {{T-REKS:} identification of Tandem REpeats in sequences with a K-meanS
based algorithm},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2632--2638},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp482},
doi = {10.1093/BIOINFORMATICS/BTP482},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JordaK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JosephD09,
author = {Jacob M. Joseph and
Dannie Durand},
title = {Family classification without domain chaining},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp207},
doi = {10.1093/BIOINFORMATICS/BTP207},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JosephD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JoshiSMPM09,
author = {Anagha Joshi and
Riet De Smet and
Kathleen Marchal and
Yves Van de Peer and
Tom Michoel},
title = {Module networks revisited: computational assessment and prioritization
of model predictions},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {490--496},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn658},
doi = {10.1093/BIOINFORMATICS/BTN658},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JoshiSMPM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JoungF09,
author = {Je{-}Gun Joung and
Zhangjun Fei},
title = {Identification of microRNA regulatory modules in \emph{Arabidopsis}
via a probabilistic graphical model},
journal = {Bioinform.},
volume = {25},
number = {3},
pages = {387--393},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn626},
doi = {10.1093/BIOINFORMATICS/BTN626},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JoungF09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JudyJ09,
author = {Jennifer Toolan Judy and
Hongkai Ji},
title = {TileProbe: modeling tiling array probe effects using publicly available
data},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2369--2375},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp425},
doi = {10.1093/BIOINFORMATICS/BTP425},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JudyJ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JungK09,
author = {Inkyung Jung and
Dongsup Kim},
title = {{SIMPRO:} simple protein homology detection method by using indirect
signals},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {729--735},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp048},
doi = {10.1093/BIOINFORMATICS/BTP048},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JungK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JungYRCL09,
author = {Tae{-}Sung Jung and
Hock Chuan Yeo and
Satty G. Reddy and
Wan{-}Sup Cho and
Dong{-}Yup Lee},
title = {WEbcoli: an interactive and asynchronous web application for \emph{in
silico} design and analysis of genome-scale \emph{E.coli} model},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2850--2852},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp496},
doi = {10.1093/BIOINFORMATICS/BTP496},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JungYRCL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JurgelenaiteDKH09,
author = {Rasa Jurgelenaite and
Tjeerd Dijkstra and
Clemens H. M. Kocken and
Tom Heskes},
title = {Gene regulation in the intraerythrocytic cycle of \emph{Plasmodium
falciparum}},
journal = {Bioinform.},
volume = {25},
number = {12},
pages = {1484--1491},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp179},
doi = {10.1093/BIOINFORMATICS/BTP179},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JurgelenaiteDKH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KaczkowskiTRHSG09,
author = {Bogumil Kaczkowski and
Elfar Torarinsson and
Kristin Reiche and
Jakob Hull Havgaard and
Peter F. Stadler and
Jan Gorodkin},
title = {Structural profiles of human miRNA families from pairwise clustering},
journal = {Bioinform.},
volume = {25},
number = {3},
pages = {291--294},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn628},
doi = {10.1093/BIOINFORMATICS/BTN628},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KaczkowskiTRHSG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KaderaliDZFB09,
author = {Lars Kaderali and
Eva Dazert and
Ulf Zeuge and
Michael Frese and
Ralf Bartenschlager},
title = {Reconstructing signaling pathways from RNAi data using probabilistic
Boolean threshold networks},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2229--2235},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp375},
doi = {10.1093/BIOINFORMATICS/BTP375},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KaderaliDZFB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KaletaRD09,
author = {Christoph Kaleta and
Stephan Richter and
Peter Dittrich},
title = {Using chemical organization theory for model checking},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1915--1922},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp332},
doi = {10.1093/BIOINFORMATICS/BTP332},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KaletaRD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KallSN09,
author = {Lukas K{\"{a}}ll and
John D. Storey and
William Stafford Noble},
title = {{QVALITY:} non-parametric estimation of \emph{q}-values and posterior
error probabilities},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {964--966},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp021},
doi = {10.1093/BIOINFORMATICS/BTP021},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KallSN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KandasamyKRPRMP09,
author = {Kumaran Kandasamy and
Shivakumar Keerthikumar and
Rajesh Raju and
T. S. Keshava Prasad and
Y. L. Ramachandra and
S. Sujatha Mohan and
Akhilesh Pandey},
title = {PathBuilder - open source software for annotating and developing pathway
resources},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2860--2862},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp453},
doi = {10.1093/BIOINFORMATICS/BTP453},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KandasamyKRPRMP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KanoBMACHT09,
author = {Yoshinobu Kano and
William A. Baumgartner Jr. and
Luke McCrohon and
Sophia Ananiadou and
K. Bretonnel Cohen and
Lawrence Hunter and
Jun'ichi Tsujii},
title = {U-Compare: share and compare text mining tools with {UIMA}},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1997--1998},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp289},
doi = {10.1093/BIOINFORMATICS/BTP289},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KanoBMACHT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KarpievitchSTHAAHMQYSD09,
author = {Yuliya V. Karpievitch and
Jeff Stanley and
Thomas Taverner and
Jianhua Huang and
Joshua N. Adkins and
Charles Ansong and
Fred Heffron and
Thomas O. Metz and
Wei{-}Jun Qian and
Hyunjin Yoon and
Richard D. Smith and
Alan R. Dabney},
title = {A statistical framework for protein quantitation in bottom-up MS-based
proteomics},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2028--2034},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp362},
doi = {10.1093/BIOINFORMATICS/BTP362},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KarpievitchSTHAAHMQYSD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KarpievitchTACASD09,
author = {Yuliya V. Karpievitch and
Thomas Taverner and
Joshua N. Adkins and
Stephen J. Callister and
Gordon A. Anderson and
Richard D. Smith and
Alan R. Dabney},
title = {Normalization of peak intensities in bottom-up MS-based proteomics
using singular value decomposition},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2573--2580},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp426},
doi = {10.1093/BIOINFORMATICS/BTP426},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KarpievitchTACASD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KashimaYKST09,
author = {Hisashi Kashima and
Yoshihiro Yamanishi and
Tsuyoshi Kato and
Masashi Sugiyama and
Koji Tsuda},
title = {Simultaneous inference of biological networks of multiple species
from genome-wide data and evolutionary information: a semi-supervised
approach},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {2962--2968},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp494},
doi = {10.1093/BIOINFORMATICS/BTP494},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KashimaYKST09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KauffmanK09,
author = {Christopher Kauffman and
George Karypis},
title = {{LIBRUS:} combined machine learning and homology information for sequence-based
ligand-binding residue prediction},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3099--3107},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp561},
doi = {10.1093/BIOINFORMATICS/BTP561},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KauffmanK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KauffmannGH09,
author = {Audrey Kauffmann and
Robert Gentleman and
Wolfgang Huber},
title = {arrayQualityMetrics - a bioconductor package for quality assessment
of microarray data},
journal = {Bioinform.},
volume = {25},
number = {3},
pages = {415--416},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn647},
doi = {10.1093/BIOINFORMATICS/BTN647},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KauffmannGH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KauffmannRPKLBH09,
author = {Audrey Kauffmann and
Tim F. Rayner and
Helen E. Parkinson and
Misha Kapushesky and
Margus Lukk and
Alvis Brazma and
Wolfgang Huber},
title = {Importing ArrayExpress datasets into R/Bioconductor},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2092--2094},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp354},
doi = {10.1093/BIOINFORMATICS/BTP354},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KauffmannRPKLBH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KawaharaSMMSZGII09,
author = {Yoshihiro Kawahara and
Ryuichi Sakate and
Akihiro Matsuya and
Katsuhiko Murakami and
Yoshiharu Sato and
Hao Zhang and
Takashi Gojobori and
Takeshi Itoh and
Tadashi Imanishi},
title = {G-compass: a web-based comparative genome browser between human and
other vertebrate genomes},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3321--3322},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp594},
doi = {10.1093/BIOINFORMATICS/BTP594},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KawaharaSMMSZGII09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KayanoTSTM09,
author = {Mitsunori Kayano and
Ichigaku Takigawa and
Motoki Shiga and
Koji Tsuda and
Hiroshi Mamitsuka},
title = {Efficiently finding genome-wide three-way gene interactions from transcript-
and genotype-data},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2735--2743},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp531},
doi = {10.1093/BIOINFORMATICS/BTP531},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KayanoTSTM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KellerBGKKML09,
author = {Andreas Keller and
Christina Backes and
Andreas Gerasch and
Michael Kaufmann and
Oliver Kohlbacher and
Eckart Meese and
Hans{-}Peter Lenhof},
title = {A novel algorithm for detecting differentially regulated paths based
on gene set enrichment analysis},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2787--2794},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp510},
doi = {10.1093/BIOINFORMATICS/BTP510},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KellerBGKKML09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KelmSD09,
author = {Sebastian Kelm and
Jiye Shi and
Charlotte M. Deane},
title = {iMembrane: homology-based membrane-insertion of proteins},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {1086--1088},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp102},
doi = {10.1093/BIOINFORMATICS/BTP102},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KelmSD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KemenaN09,
author = {Carsten Kemena and
C{\'{e}}dric Notredame},
title = {Upcoming challenges for multiple sequence alignment methods in the
high-throughput era},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2455--2465},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp452},
doi = {10.1093/BIOINFORMATICS/BTP452},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KemenaN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Kerr09,
author = {Kathleen F. Kerr},
title = {Comments on the analysis of unbalanced microarray data},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2035--2041},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp363},
doi = {10.1093/BIOINFORMATICS/BTP363},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Kerr09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KhanBKS09,
author = {Zia Khan and
Joshua S. Bloom and
Leonid Kruglyak and
Mona Singh},
title = {A practical algorithm for finding maximal exact matches in large sequence
datasets using sparse suffix arrays},
journal = {Bioinform.},
volume = {25},
number = {13},
pages = {1609--1616},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp275},
doi = {10.1093/BIOINFORMATICS/BTP275},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KhanBKS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KhatibRK09,
author = {Firas Khatib and
Carol A. Rohl and
Kevin Karplus},
title = {Pokefind: a novel topological filter for use with protein structure
prediction},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp198},
doi = {10.1093/BIOINFORMATICS/BTP198},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KhatibRK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimBLP09,
author = {Youngchul Kim and
Stefan Bekiranov and
Jae K. Lee and
Taesung Park},
title = {Double error shrinkage method for identifying protein binding sites
observed by tiling arrays with limited replication},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2486--2491},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp471},
doi = {10.1093/BIOINFORMATICS/BTP471},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimBLP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimKWPL09,
author = {Jong Hyun Kim and
Woo{-}Cheol Kim and
Michael S. Waterman and
Sanghyun Park and
Lei M. Li},
title = {{HAPLOWSER:} a whole-genome haplotype browser for personal genome
and metagenome},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2430--2431},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp399},
doi = {10.1093/BIOINFORMATICS/BTP399},
timestamp = {Thu, 03 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimKWPL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimSX09,
author = {Seyoung Kim and
Kyung{-}Ah Sohn and
Eric P. Xing},
title = {A multivariate regression approach to association analysis of a quantitative
trait network},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp218},
doi = {10.1093/BIOINFORMATICS/BTP218},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimSX09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimTRMCSTP09,
author = {You Jung Kim and
Nikhil Teletia and
Victor Ruotti and
Christopher A. Maher and
Arul M. Chinnaiyan and
Ron M. Stewart and
James A. Thomson and
Jignesh M. Patel},
title = {ProbeMatch: rapid alignment of oligonucleotides to genome allowing
both gaps and mismatches},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1424--1425},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp178},
doi = {10.1093/BIOINFORMATICS/BTP178},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimTRMCSTP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimYSKMCDY09,
author = {Jinkyu Kim and
Seunghak Yu and
Byonghyo Shim and
Hanjoo Kim and
Hyeyoung Min and
Eui{-}Young Chung and
Rhiju Das and
Sungroh Yoon},
title = {A robust peak detection method for {RNA} structure inference by high-throughput
contact mapping},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1137--1144},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp110},
doi = {10.1093/BIOINFORMATICS/BTP110},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimYSKMCDY09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimuraNH09,
author = {Shuhei Kimura and
Satoshi Nakayama and
Mariko Hatakeyama},
title = {Genetic network inference as a series of discrimination tasks},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {918--925},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp072},
doi = {10.1093/BIOINFORMATICS/BTP072},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimuraNH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KingT09,
author = {Bracken M. King and
Bruce Tidor},
title = {{MIST:} Maximum Information Spanning Trees for dimension reduction
of biological data sets},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1165--1172},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp109},
doi = {10.1093/BIOINFORMATICS/BTP109},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KingT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KinoshitaO09,
author = {Kengo Kinoshita and
Takeshi Obayashi},
title = {Multi-dimensional correlations for gene coexpression and application
to the large-scale data of Arabidopsis},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2677--2684},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp442},
doi = {10.1093/BIOINFORMATICS/BTP442},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KinoshitaO09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KirkS09,
author = {Paul D. W. Kirk and
Michael P. H. Stumpf},
title = {Gaussian process regression bootstrapping: exploring the effects of
uncertainty in time course data},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1300--1306},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp139},
doi = {10.1093/BIOINFORMATICS/BTP139},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KirkS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KitamuraAMKTNNSH09,
author = {Nobutaka Kitamura and
Kouhei Akazawa and
Akinori Miyashita and
Ryozo Kuwano and
Shin{-}ichi Toyabe and
Junichiro Nakamura and
Norihito Nakamura and
Tatsuhiko Sato and
M. Aminul Hoque},
title = {Programs for calculating the statistical powers of detecting susceptibility
genes in case-control studies based on multistage designs},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {272--273},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn616},
doi = {10.1093/BIOINFORMATICS/BTN616},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KitamuraAMKTNNSH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KlingelhoeferMH09,
author = {Jochen W. Klingelhoefer and
Loukas Moutsianas and
Christopher C. Holmes},
title = {Approximate Bayesian feature selection on a large meta-dataset offers
novel insights on factors that effect siRNA potency},
journal = {Bioinform.},
volume = {25},
number = {13},
pages = {1594--1601},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp284},
doi = {10.1093/BIOINFORMATICS/BTP284},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KlingelhoeferMH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KnijnenburgWRS09,
author = {Theo A. Knijnenburg and
Lodewyk F. A. Wessels and
Marcel J. T. Reinders and
Ilya Shmulevich},
title = {Fewer permutations, more accurate \emph{P}-values},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp211},
doi = {10.1093/BIOINFORMATICS/BTP211},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KnijnenburgWRS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KoboldtCWLMMWWD09,
author = {Daniel C. Koboldt and
Ken Chen and
Todd Wylie and
David E. Larson and
Michael D. McLellan and
Elaine R. Mardis and
George M. Weinstock and
Richard K. Wilson and
Li Ding},
title = {VarScan: variant detection in massively parallel sequencing of individual
and pooled samples},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2283--2285},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp373},
doi = {10.1093/BIOINFORMATICS/BTP373},
timestamp = {Wed, 21 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KoboldtCWLMMWWD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KolbeE09,
author = {Diana L. Kolbe and
Sean R. Eddy},
title = {Local {RNA} structure alignment with incomplete sequence},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1236--1243},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp154},
doi = {10.1093/BIOINFORMATICS/BTP154},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KolbeE09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KongR09,
author = {Xiaoxiao Kong and
Cavan Reilly},
title = {A Bayesian approach to the alignment of mass spectra},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3213--3220},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp582},
doi = {10.1093/BIOINFORMATICS/BTP582},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KongR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KoressaarJR09,
author = {Triinu Koressaar and
Kai J{\~{o}}ers and
Maido Remm},
title = {Automatic identification of species-specific repetitive {DNA} sequences
and their utilization for detecting microbial organisms},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1349--1355},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp241},
doi = {10.1093/BIOINFORMATICS/BTP241},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KoressaarJR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KorhonenMPRU09,
author = {Janne H. Korhonen and
Petri Martinm{\"{a}}ki and
Cinzia Pizzi and
Pasi Rastas and
Esko Ukkonen},
title = {{MOODS:} fast search for position weight matrix matches in {DNA} sequences},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3181--3182},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp554},
doi = {10.1093/BIOINFORMATICS/BTP554},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KorhonenMPRU09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KotteH09,
author = {Oliver Kotte and
Matthias Heinemann},
title = {A divide-and-conquer approach to analyze underdetermined biochemical
models},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {519--525},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp004},
doi = {10.1093/BIOINFORMATICS/BTP004},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KotteH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KoziolFJWGMM09,
author = {James A. Koziol and
Anne C. Feng and
Zhenyu Jia and
Yipeng Wang and
Seven Goodison and
Michael McClelland and
Dan Mercola},
title = {The wisdom of the commons: ensemble tree classifiers for prostate
cancer prognosis},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {54--60},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn354},
doi = {10.1093/BIOINFORMATICS/BTN354},
timestamp = {Wed, 05 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KoziolFJWGMM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KrestyaninovaZVKRNGPKBLRPSMB09,
author = {Maria Krestyaninova and
Andris Zarins and
Juris Viksna and
Natalja Kurbatova and
Peteris Rucevskis and
Sudeshna Guha Neogi and
Mike Gostev and
Teemu Perheentupa and
Juha Knuuttila and
Amy Barrett and
Ilkka Lappalainen and
Johan Rung and
Karlis Podnieks and
Ugis Sarkans and
Mark I. McCarthy and
Alvis Brazma},
title = {A System for Information Management in BioMedical Studies - SIMBioMS},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2768--2769},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp420},
doi = {10.1093/BIOINFORMATICS/BTP420},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KrestyaninovaZVKRNGPKBLRPSMB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KristianssonHD09,
author = {Erik Kristiansson and
Philip Hugenholtz and
Daniel Dalevi},
title = {ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2737--2738},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp508},
doi = {10.1093/BIOINFORMATICS/BTP508},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KristianssonHD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KubatkoCK09,
author = {Laura Salter Kubatko and
Bryan C. Carstens and
L. Lacey Knowles},
title = {{STEM:} species tree estimation using maximum likelihood for gene
trees under coalescence},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {971--973},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp079},
doi = {10.1093/BIOINFORMATICS/BTP079},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KubatkoCK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KukZY09,
author = {Anthony Y. C. Kuk and
Han Zhang and
Yaning Yang},
title = {Computationally feasible estimation of haplotype frequencies from
pooled {DNA} with and without Hardy-Weinberg equilibrium},
journal = {Bioinform.},
volume = {25},
number = {3},
pages = {379--386},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn623},
doi = {10.1093/BIOINFORMATICS/BTN623},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KukZY09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KulakovskiyFM09,
author = {Ivan V. Kulakovskiy and
Alexander V. Favorov and
Vsevolod J. Makeev},
title = {Motif discovery and motif finding from genome-mapped DNase footprint
data},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2318--2325},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp434},
doi = {10.1093/BIOINFORMATICS/BTP434},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KulakovskiyFM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KumarC09,
author = {Anoop Kumar and
Lenore Cowen},
title = {Augmented training of hidden Markov models to recognize remote homologs
via simulated evolution},
journal = {Bioinform.},
volume = {25},
number = {13},
pages = {1602--1608},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp265},
doi = {10.1093/BIOINFORMATICS/BTP265},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KumarC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KupczokH09,
author = {Anne Kupczok and
Arndt von Haeseler},
title = {Comment on 'A congruence index for testing topological similarity
between trees'},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {147--149},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn539},
doi = {10.1093/BIOINFORMATICS/BTN539},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KupczokH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KuznetsovMM09,
author = {Igor B. Kuznetsov and
Michael McDuffie and
Roxana Moslehi},
title = {A web server for inferring the human \emph{N}-acetyltransferase-2
{(NAT2)} enzymatic phenotype from \emph{NAT2} genotype},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1185--1186},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp121},
doi = {10.1093/BIOINFORMATICS/BTP121},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KuznetsovMM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaEVLSUAK09,
author = {David La and
Juan Esquivel{-}Rodr{\'{\i}}guez and
Vishwesh Venkatraman and
Bin Li and
Lee Sael and
Stephen Ueng and
Steven Ahrendt and
Daisuke Kihara},
title = {3D-SURFER: software for high-throughput protein surface comparison
and analysis},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2843--2844},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp542},
doi = {10.1093/BIOINFORMATICS/BTP542},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LaEVLSUAK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaFramboiseWT09,
author = {Thomas LaFramboise and
Wendy Winckler and
Roman K. Thomas},
title = {A flexible rank-based framework for detecting copy number aberrations
from array data},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {722--728},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp063},
doi = {10.1093/BIOINFORMATICS/BTP063},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LaFramboiseWT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LachmannM09,
author = {Alexander Lachmann and
Avi Ma'ayan},
title = {{KEA:} kinase enrichment analysis},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {684--686},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp026},
doi = {10.1093/BIOINFORMATICS/BTP026},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LachmannM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LagnelTI09,
author = {Jacques Lagnel and
Costas S. Tsigenopoulos and
Ioannis Iliopoulos},
title = {{NOBLAST} and {JAMBLAST:} New Options for {BLAST} and a Java Application
Manager for {BLAST} results},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {824--826},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp067},
doi = {10.1093/BIOINFORMATICS/BTP067},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LagnelTI09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LangenbergerBHHKS09,
author = {David Langenberger and
Clara Bermudez{-}Santana and
Jana Hertel and
Steve Hoffmann and
Philipp Khaitovich and
Peter F. Stadler},
title = {Evidence for human microRNA-offset RNAs in small {RNA} sequencing
data},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2298--2301},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp419},
doi = {10.1093/BIOINFORMATICS/BTP419},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LangenbergerBHHKS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LangilleB09,
author = {Morgan G. I. Langille and
Fiona S. L. Brinkman},
title = {IslandViewer: an integrated interface for computational identification
and visualization of genomic islands},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {664--665},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp030},
doi = {10.1093/BIOINFORMATICS/BTP030},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LangilleB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LartillotLB09,
author = {Nicolas Lartillot and
Thomas Lepage and
Samuel Blanquart},
title = {PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction
and molecular dating},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2286--2288},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp368},
doi = {10.1093/BIOINFORMATICS/BTP368},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LartillotLB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LassmannHD09,
author = {Timo Lassmann and
Yoshihide Hayashizaki and
Carsten O. Daub},
title = {TagDust - a program to eliminate artifacts from next generation sequencing
data},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2839--2840},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp527},
doi = {10.1093/BIOINFORMATICS/BTP527},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LassmannHD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LatifBB09,
author = {A. H. M. Mahbub Latif and
Frank Bretz and
Edgar Brunner},
title = {Robustness considerations in selecting efficient two-color microarray
designs},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2355--2361},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp407},
doi = {10.1093/BIOINFORMATICS/BTP407},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LatifBB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LawrenceGC09,
author = {Michael F. Lawrence and
Robert Gentleman and
Vincent J. Carey},
title = {rtracklayer: an {R} package for interfacing with genome browsers},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1841--1842},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp328},
doi = {10.1093/BIOINFORMATICS/BTP328},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LawrenceGC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LayekDPD09,
author = {Ritwik Layek and
Aniruddha Datta and
Ranadip Pal and
Edward R. Dougherty},
title = {Adaptive intervention in probabilistic boolean networks},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2042--2048},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp349},
doi = {10.1093/BIOINFORMATICS/BTP349},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LayekDPD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeberESS09,
author = {Markus Leber and
Volker Egelhofer and
Ida Schomburg and
Dietmar Schomburg},
title = {Automatic assignment of reaction operators to enzymatic reactions},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3135--3142},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp549},
doi = {10.1093/BIOINFORMATICS/BTP549},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeberESS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeB09,
author = {Semin Lee and
Tom L. Blundell},
title = {{BIPA:} a database for protein-nucleic acid interaction in 3D structures},
journal = {Bioinform.},
volume = {25},
number = {12},
pages = {1559--1560},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp243},
doi = {10.1093/BIOINFORMATICS/BTP243},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeB09a,
author = {Semin Lee and
Tom L. Blundell},
title = {Ulla: a program for calculating environment-specific amino acid substitution
tables},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1976--1977},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp300},
doi = {10.1093/BIOINFORMATICS/BTP300},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeB09a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeHGCL09,
author = {Ed Lee and
Nomi L. Harris and
Mark Gibson and
Raymond Chetty and
Suzanna Lewis},
title = {Apollo: a community resource for genome annotation editing},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1836--1837},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp314},
doi = {10.1093/BIOINFORMATICS/BTP314},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeHGCL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeK09a,
author = {Byung{-}chul Lee and
Dongsup Kim},
title = {A new method for revealing correlated mutations under the structural
and functional constraints in proteins},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2506--2513},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp455},
doi = {10.1093/BIOINFORMATICS/BTP455},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeK09a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeNRCH09,
author = {Bongshin Lee and
Lev Nachmanson and
George G. Robertson and
Jonathan M. Carlson and
David Heckerman},
title = {PhyloDet: a scalable visualization tool for mapping multiple traits
to large evolutionary trees},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2611--2612},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp454},
doi = {10.1093/BIOINFORMATICS/BTP454},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeNRCH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeS09,
author = {Phil Hyoun Lee and
Hagit Shatkay},
title = {An integrative scoring system for ranking SNPs by their potential
deleterious effects},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {1048--1055},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp103},
doi = {10.1093/BIOINFORMATICS/BTP103},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeWBEM09,
author = {Woonghee Lee and
William M. Westler and
Arash Bahrami and
Hamid Eghbalnia and
John L. Markley},
title = {{PINE-SPARKY:} graphical interface for evaluating automated probabilistic
peak assignments in protein {NMR} spectroscopy},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2085--2087},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp345},
doi = {10.1093/BIOINFORMATICS/BTP345},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeWBEM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Leek09,
author = {Jeffrey T. Leek},
title = {The \texttt{tspair} package for finding top scoring pair classifiers
in \texttt{R}},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1203--1204},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp126},
doi = {10.1093/BIOINFORMATICS/BTP126},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Leek09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Levy-MoonshineAK09,
author = {Ami Levy{-}Moonshine and
El{-}ad David Amir and
Chen Keasar},
title = {Enhancement of beta-sheet assembly by cooperative hydrogen bonds potential},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2639--2645},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp449},
doi = {10.1093/BIOINFORMATICS/BTP449},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Levy-MoonshineAK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiD09,
author = {Heng Li and
Richard Durbin},
title = {Fast and accurate short read alignment with Burrows-Wheeler transform},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1754--1760},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp324},
doi = {10.1093/BIOINFORMATICS/BTP324},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiDXL09,
author = {Hong Li and
Guohui Ding and
Lu Xie and
Yixue Li},
title = {PAnnBuilder: an {R} package for assembling proteomic annotation data},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {1094--1095},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp100},
doi = {10.1093/BIOINFORMATICS/BTP100},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiDXL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiHWFRHMAD09,
author = {Heng Li and
Bob Handsaker and
Alec Wysoker and
Tim Fennell and
Jue Ruan and
Nils Homer and
Gabor T. Marth and
Gon{\c{c}}alo R. Abecasis and
Richard Durbin},
title = {The Sequence Alignment/Map format and SAMtools},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2078--2079},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp352},
doi = {10.1093/BIOINFORMATICS/BTP352},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiHWFRHMAD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiJKSS09,
author = {Miao{-}Xin Li and
Lin Jiang and
Patrick Yu{-}Ping Kao and
Pak Chung Sham and
You{-}Qiang Song},
title = {{IGG3:} a tool to rapidly integrate large genotype datasets for whole-genome
imputation and individual-level meta-analysis},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1449--1450},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp183},
doi = {10.1093/BIOINFORMATICS/BTP183},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiJKSS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiKMXKCMR09,
author = {Biao Li and
Vidhya G. Krishnan and
Matthew E. Mort and
Fuxiao Xin and
Kishore K. Kamati and
David N. Cooper and
Sean D. Mooney and
Predrag Radivojac},
title = {Automated inference of molecular mechanisms of disease from amino
acid substitutions},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2744--2750},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp528},
doi = {10.1093/BIOINFORMATICS/BTP528},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiKMXKCMR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiL09,
author = {Jinyan Li and
Qian Liu},
title = {'Double water exclusion': a hypothesis refining the O-ring theory
for the hot spots at protein interfaces},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {743--750},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp058},
doi = {10.1093/BIOINFORMATICS/BTP058},
timestamp = {Fri, 16 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiUMLLCC09,
author = {Hu Li and
Choong Yong Ung and
Xiao Hua Ma and
Bao Wen Li and
Boon Chuan Low and
Zhi Wei Cao and
Yu Zong Chen},
title = {Simulation of crosstalk between small GTPase RhoA and {EGFR-ERK} signaling
pathway via {MEKK1}},
journal = {Bioinform.},
volume = {25},
number = {3},
pages = {358--364},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn635},
doi = {10.1093/BIOINFORMATICS/BTN635},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiUMLLCC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiWB09,
author = {Qingliang Li and
Yanli Wang and
Stephen H. Bryant},
title = {A novel method for mining highly imbalanced high-throughput screening
data in PubChem},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3310--3316},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp589},
doi = {10.1093/BIOINFORMATICS/BTP589},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiWB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiWGHL09,
author = {Mingyao Li and
Kai Wang and
Struan F. A. Grant and
Hakon Hakonarson and
Chun Li},
title = {{ATOM:} a powerful gene-based association test by combining optimally
weighted markers},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {497--503},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn641},
doi = {10.1093/BIOINFORMATICS/BTN641},
timestamp = {Thu, 28 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiWGHL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiYLLYKW09,
author = {Ruiqiang Li and
Chang Yu and
Yingrui Li and
Tak Wah Lam and
Siu{-}Ming Yiu and
Karsten Kristiansen and
Jun Wang},
title = {{SOAP2:} an improved ultrafast tool for short read alignment},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1966--1967},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp336},
doi = {10.1093/BIOINFORMATICS/BTP336},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiYLLYKW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiangWRS09,
author = {Li{-}Jung Liang and
Robert E. Weiss and
Benjamin D. Redelings and
Marc A. Suchard},
title = {Improving phylogenetic analyses by incorporating additional information
from genetic sequence databases},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2530--2536},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp473},
doi = {10.1093/BIOINFORMATICS/BTP473},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiangWRS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiaoLBSB09,
author = {Chung{-}Shou Liao and
Kanghao Lu and
Michael Baym and
Rohit Singh and
Bonnie Berger},
title = {IsoRankN: spectral methods for global alignment of multiple protein
networks},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp203},
doi = {10.1093/BIOINFORMATICS/BTP203},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiaoLBSB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LibradoR09,
author = {Pablo Librado and
Julio Rozas},
title = {DnaSP v5: a software for comprehensive analysis of {DNA} polymorphism
data},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1451--1452},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp187},
doi = {10.1093/BIOINFORMATICS/BTP187},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LibradoR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LindlofBCOO09,
author = {Angelica Lindl{\"{o}}f and
Marcus Br{\"{a}}utigam and
Aakash Chawade and
Olof Olsson and
Bj{\"{o}}rn Olsson},
title = {\emph{In silico} analysis of promoter regions from cold-induced genes
in rice (\emph{Oryza sativa} {L.)} and \emph{Arabidopsis thaliana}
reveals the importance of combinatorial control},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1345--1348},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp172},
doi = {10.1093/BIOINFORMATICS/BTP172},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LindlofBCOO09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LingCJLS09,
author = {Xuefeng Bruce Ling and
Harvey J. Cohen and
Joseph Jin and
Irwin Lau and
James Schilling},
title = {{FDR} made easy in differential feature discovery and correlation
analyses},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1461--1462},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp176},
doi = {10.1093/BIOINFORMATICS/BTP176},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LingCJLS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LingHX09,
author = {Xu Ling and
Xin He and
Dong Xin},
title = {Detecting gene clusters under evolutionary constraint in a large number
of genomes},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {571--577},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp027},
doi = {10.1093/BIOINFORMATICS/BTP027},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LingHX09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LippiF09,
author = {Marco Lippi and
Paolo Frasconi},
title = {Prediction of protein beta-residue contacts by Markov logic networks
with grounding-specific weights},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2326--2333},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp421},
doi = {10.1093/BIOINFORMATICS/BTP421},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LippiF09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LisADC09,
author = {Mieszko Lis and
Maxim N. Artyomov and
Srinivas Devadas and
Arup K. Chakraborty},
title = {Efficient stochastic simulation of reaction-diffusion processes via
direct compilation},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2289--2291},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp387},
doi = {10.1093/BIOINFORMATICS/BTP387},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LisADC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ListerPTW09,
author = {Allyson L. Lister and
Matthew R. Pocock and
Morgan L. Taschuk and
Anil Wipat},
title = {Saint: a lightweight integration environment for model annotation},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {3026--3027},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp523},
doi = {10.1093/BIOINFORMATICS/BTP523},
timestamp = {Thu, 02 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ListerPTW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuBRBK09,
author = {Jun Liu and
Nirmalya Bandyopadhyay and
Sanjay Ranka and
Michael Baudis and
Tamer Kahveci},
title = {Inferring progression models for {CGH} data},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2208--2215},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp365},
doi = {10.1093/BIOINFORMATICS/BTP365},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuBRBK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuCJ09,
author = {Mei Liu and
Xue{-}wen Chen and
Raja Jothi},
title = {Knowledge-guided inference of domain-domain interactions from incomplete
protein-protein interaction networks},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2492--2499},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp480},
doi = {10.1093/BIOINFORMATICS/BTP480},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuCJ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuHYM09,
author = {Xiaowen Liu and
Yonghua Han and
Denis Yuen and
Bin Ma},
title = {Automated protein (re)sequencing with {MS/MS} and a homologous database
yields almost full coverage and accuracy},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2174--2180},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp366},
doi = {10.1093/BIOINFORMATICS/BTP366},
timestamp = {Wed, 15 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuHYM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuWC09,
author = {Guimei Liu and
Limsoon Wong and
Hon Nian Chua},
title = {Complex discovery from weighted {PPI} networks},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1891--1897},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp311},
doi = {10.1093/BIOINFORMATICS/BTP311},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuWC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuX09,
author = {KunHong Liu and
Chun{-}Gui Xu},
title = {A genetic programming-based approach to the classification of multiclass
microarray datasets},
journal = {Bioinform.},
volume = {25},
number = {3},
pages = {331--337},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn644},
doi = {10.1093/BIOINFORMATICS/BTN644},
timestamp = {Mon, 07 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuX09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LoCRLSH09,
author = {Allan Lo and
Yi{-}Yuan Chiu and
Einar Andreas R{\o}dland and
Ping{-}Chiang Lyu and
Ting{-}Yi Sung and
Wen{-}Lian Hsu},
title = {Predicting helix-helix interactions from residue contacts in membrane
proteins},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {996--1003},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp114},
doi = {10.1093/BIOINFORMATICS/BTP114},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LoCRLSH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LobleySJ09,
author = {Anna E. Lobley and
Michael I. Sadowski and
David T. Jones},
title = {pGenTHREADER and pDomTHREADER: new methods for improved protein fold
recognition and superfamily discrimination},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1761--1767},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp302},
doi = {10.1093/BIOINFORMATICS/BTP302},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LobleySJ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LongMNT09,
author = {Quan Long and
Daniel G. MacArthur and
Zemin Ning and
Chris Tyler{-}Smith},
title = {{HI:} haplotype improver using paired-end short reads},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2436--2437},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp412},
doi = {10.1093/BIOINFORMATICS/BTP412},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LongMNT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LopesBB09,
author = {Joao S. Lopes and
David J. Balding and
Mark A. Beaumont},
title = {PopABC: a program to infer historical demographic parameters},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2747--2749},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp487},
doi = {10.1093/BIOINFORMATICS/BTP487},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LopesBB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LottSHM09,
author = {Martin Lott and
Andreas Spillner and
Katharina T. Huber and
Vincent Moulton},
title = {{PADRE:} a package for analyzing and displaying reticulate evolution},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1199--1200},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp133},
doi = {10.1093/BIOINFORMATICS/BTP133},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LottSHM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LozanoALR09,
author = {Aur{\'{e}}lie C. Lozano and
Naoki Abe and
Yan Liu and
Saharon Rosset},
title = {Grouped graphical Granger modeling for gene expression regulatory
networks discovery},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp199},
doi = {10.1093/BIOINFORMATICS/BTP199},
timestamp = {Fri, 29 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LozanoALR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuBAB09,
author = {David V. Lu and
Randall H. Brown and
Manimozhiyan Arumugam and
Michael R. Brent},
title = {Pairagon: a highly accurate, HMM-based cDNA-to-genome aligner},
journal = {Bioinform.},
volume = {25},
number = {13},
pages = {1587--1593},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp273},
doi = {10.1093/BIOINFORMATICS/BTP273},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuBAB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuHB09,
author = {Yong Lu and
Peter Huggins and
Ziv Bar{-}Joseph},
title = {Cross species analysis of microarray expression data},
journal = {Bioinform.},
volume = {25},
number = {12},
pages = {1476--1483},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp247},
doi = {10.1093/BIOINFORMATICS/BTP247},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuHB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuK09,
author = {Chuan Lu and
Ross D. King},
title = {An investigation into the population abundance distribution of mRNAs,
proteins, and metabolites in biological systems},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2020--2027},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp360},
doi = {10.1093/BIOINFORMATICS/BTP360},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LuXW09,
author = {Zhiyong Lu and
Natalie Xie and
W. John Wilbur},
title = {Identifying related journals through log analysis},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {3038--3039},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp529},
doi = {10.1093/BIOINFORMATICS/BTP529},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuXW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LublinerS09,
author = {Shai Lubliner and
Eran Segal},
title = {Modeling interactions between adjacent nucleosomes improves genome-wide
predictions of nucleosome occupancy},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp216},
doi = {10.1093/BIOINFORMATICS/BTP216},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LublinerS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LynnLLWSLLHP09,
author = {Ke{-}Shiuan Lynn and
Li{-}Lan Li and
Yen{-}Ju Lin and
Chiuen{-}Huei Wang and
Shu{-}Hui Sheng and
Ju{-}Hwa Lin and
Wayne Liao and
Wen{-}Lian Hsu and
Wen{-}Harn Pan},
title = {A neural network model for constructing endophenotypes of common complex
diseases: an application to male young-onset hypertension microarray
data},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {981--988},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp106},
doi = {10.1093/BIOINFORMATICS/BTP106},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LynnLLWSLLHP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaK09,
author = {Shuangge Ma and
Michael R. Kosorok},
title = {Identification of differential gene pathways with principal component
analysis},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {882--889},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp085},
doi = {10.1093/BIOINFORMATICS/BTP085},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaenhoutBH09,
author = {Steven Maenhout and
Bernard De Baets and
Geert Haesaert},
title = {CoCoa: a software tool for estimating the coefficient of coancestry
from multilocus genotype data},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2753--2754},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp499},
doi = {10.1093/BIOINFORMATICS/BTP499},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaenhoutBH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MagalhaesCC09,
author = {Jo{\~{a}}o Pedro de Magalh{\~{a}}es and
Jo{\~{a}}o Curado and
George M. Church},
title = {Meta-analysis of age-related gene expression profiles identifies common
signatures of aging},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {875--881},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp073},
doi = {10.1093/BIOINFORMATICS/BTP073},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MagalhaesCC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MagnanRB09,
author = {Christophe N. Magnan and
Arlo Z. Randall and
Pierre Baldi},
title = {SOLpro: accurate sequence-based prediction of protein solubility},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2200--2207},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp386},
doi = {10.1093/BIOINFORMATICS/BTP386},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MagnanRB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MajorosO09,
author = {William H. Majoros and
Uwe Ohler},
title = {Complexity reduction in context-dependent {DNA} substitution models},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {175--182},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn598},
doi = {10.1093/BIOINFORMATICS/BTN598},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MajorosO09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MakB09,
author = {Denise Y. F. Mak and
Gary Benson},
title = {All hits all the time: parameter-free calculation of spaced seed sensitivity},
journal = {Bioinform.},
volume = {25},
number = {3},
pages = {302--308},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn643},
doi = {10.1093/BIOINFORMATICS/BTN643},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MakB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MalhisBEJ09,
author = {Nawar Malhis and
Yaron S. N. Butterfield and
Martin Ester and
Steven J. M. Jones},
title = {Slider - maximum use of probability information for alignment of short
sequence reads and {SNP} detection},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {6--13},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn565},
doi = {10.1093/BIOINFORMATICS/BTN565},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MalhisBEJ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MannSREWB09,
author = {Martin Mann and
Cameron Smith and
Mohamad Rabbath and
Marlien Edwards and
Sebastian Will and
Rolf Backofen},
title = {CPSP-web-tools: a server for 3D lattice protein studies},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {676--677},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp034},
doi = {10.1093/BIOINFORMATICS/BTP034},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MannSREWB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ManskeK09,
author = {Heinrich Magnus Manske and
Dominic Kwiatkowski},
title = {SNP-o-matic},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2434--2435},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp403},
doi = {10.1093/BIOINFORMATICS/BTP403},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ManskeK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarcoKKK09,
author = {Antonio Marco and
Charlotte Konikoff and
Timothy L. Karr and
Sudhir Kumar},
title = {Relationship between gene co-expression and sharing of transcription
factor binding sites in \emph{Drosophila melanogaster}},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2473--2477},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp462},
doi = {10.1093/BIOINFORMATICS/BTP462},
timestamp = {Fri, 05 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarcoKKK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarkowitzMICCK09,
author = {Victor M. Markowitz and
Konstantinos Mavrommatis and
Natalia Ivanova and
I{-}Min A. Chen and
Ken Chu and
Nikos Kyrpides},
title = {{IMG} {ER:} a system for microbial genome annotation expert review
and curation},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2271--2278},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp393},
doi = {10.1093/BIOINFORMATICS/BTP393},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarkowitzMICCK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarotFMJ09,
author = {Guillemette Marot and
Jean{-}Louis Foulley and
Claus{-}Dieter Mayer and
Florence Jaffr{\'{e}}zic},
title = {Moderated effect size and \emph{P}-value combinations for microarray
meta-analyses},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2692--2699},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp444},
doi = {10.1093/BIOINFORMATICS/BTP444},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarotFMJ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarschallR09,
author = {Tobias Marschall and
Sven Rahmann},
title = {Efficient exact motif discovery},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp188},
doi = {10.1093/BIOINFORMATICS/BTP188},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarschallR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarsellaSTST09,
author = {Luca Marsella and
Francesco Sirocco and
Antonio Trovato and
Flavio Seno and
Silvio C. E. Tosatto},
title = {{REPETITA:} detection and discrimination of the periodicity of protein
solenoid repeats by discrete Fourier transform},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp232},
doi = {10.1093/BIOINFORMATICS/BTP232},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarsellaSTST09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MartinVTXS09,
author = {Olivier Martin and
Armand Valsesia and
Amalio Telenti and
Ioannis Xenarios and
Brian J. Stevenson},
title = {AssociationViewer: a scalable and integrated software tool for visualization
of large-scale variation data in genomic context},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {662--663},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp017},
doi = {10.1093/BIOINFORMATICS/BTP017},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MartinVTXS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Martinez-AlcantaraBFRKFHF09,
author = {Antonio Mart{\'{\i}}nez{-}Alc{\'{a}}ntara and
Efren Ballesteros and
Chen Feng and
Mark Rojas and
H. Koshinsky and
Viacheslav Fofanov and
Paul Havlak and
Yuriy Fofanov},
title = {{PIQA:} pipeline for Illumina {G1} genome analyzer data quality assessment},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2438--2439},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp429},
doi = {10.1093/BIOINFORMATICS/BTP429},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Martinez-AlcantaraBFRKFHF09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MatschinerS09,
author = {Michael Matschiner and
Walter Salzburger},
title = {{TANDEM:} integrating automated allele binning into genetics and genomics
workflows},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1982--1983},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp303},
doi = {10.1093/BIOINFORMATICS/BTP303},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MatschinerS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/McCarthyS09,
author = {Davis J. McCarthy and
Gordon K. Smyth},
title = {Testing significance relative to a fold-change threshold is a {TREAT}},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {765--771},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp053},
doi = {10.1093/BIOINFORMATICS/BTP053},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/McCarthyS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/McCombCNWMR09,
author = {Tim McComb and
Oliver Cairncross and
Andrew B. Noske and
David L. A. Wood and
Brad J. Marsh and
Mark A. Ragan},
title = {Illoura\({}^{\mbox{TM}}\): a software tool for analysis, visualization
and semantic querying of cellular and other spatial biological data},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1208--1210},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp125},
doi = {10.1093/BIOINFORMATICS/BTP125},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/McCombCNWMR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MelvinWLN09,
author = {Iain Melvin and
Jason Weston and
Christina S. Leslie and
William Stafford Noble},
title = {{RANKPROP:} a web server for protein remote homology detection},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {121--122},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn567},
doi = {10.1093/BIOINFORMATICS/BTN567},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MelvinWLN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MengGH09,
author = {Jia Meng and
Shou{-}Jiang Gao and
Yufei Huang},
title = {Enrichment constrained time-dependent clustering analysis for finding
meaningful temporal transcription modules},
journal = {Bioinform.},
volume = {25},
number = {12},
pages = {1521--1527},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp235},
doi = {10.1093/BIOINFORMATICS/BTP235},
timestamp = {Mon, 27 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MengGH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MessinaS09,
author = {David N. Messina and
Erik L. L. Sonnhammer},
title = {DASher: a stand-alone protein sequence client for DAS, the Distributed
Annotation System},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1333--1334},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp153},
doi = {10.1093/BIOINFORMATICS/BTP153},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MessinaS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MichelettiO09,
author = {Cristian Micheletti and
Henri Orland},
title = {{MISTRAL:} a tool for energy-based multiple structural alignment of
proteins},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2663--2669},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp506},
doi = {10.1093/BIOINFORMATICS/BTP506},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MichelettiO09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MihalevaVVHH09,
author = {V. V. Mihaleva and
H. A. Verhoeven and
R. C. H. de Vos and
R. D. Hall and
Roeland C. H. J. van Ham},
title = {Automated procedure for candidate compound selection in {GC-MS} metabolomics
based on prediction of Kovats retention index},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {787--794},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp056},
doi = {10.1093/BIOINFORMATICS/BTP056},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MihalevaVVHH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MillerZYLCLHW09,
author = {David J. Miller and
Yanxin Zhang and
Guoqiang Yu and
Yongmei Liu and
Li Chen and
Carl D. Langefeld and
David M. Herrington and
Yue Joseph Wang},
title = {An algorithm for learning maximum entropy probability models of disease
risk that efficiently searches and sparingly encodes multilocus genomic
interactions},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2478--2485},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp435},
doi = {10.1093/BIOINFORMATICS/BTP435},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MillerZYLCLHW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MilneLBHMMW09,
author = {Iain Milne and
Dominik Lindner and
Micha Bayer and
Dirk Husmeier and
Gr{\'{a}}inne McGuire and
David F. Marshall and
Frank Wright},
title = {TOPALi v2: a rich graphical interface for evolutionary analyses of
multiple alignments on {HPC} clusters and multi-core desktops},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {126--127},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn575},
doi = {10.1093/BIOINFORMATICS/BTN575},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MilneLBHMMW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Mintz-OronARS09,
author = {Shira Mintz{-}Oron and
Asaph Aharoni and
Eytan Ruppin and
Tomer Shlomi},
title = {Network-based prediction of metabolic enzymes' subcellular localization},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp209},
doi = {10.1093/BIOINFORMATICS/BTP209},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Mintz-OronARS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MirschelSRGG09,
author = {Sebastian Mirschel and
Katrin Steinmetz and
Michael Rempel and
Martin Ginkel and
Ernst Dieter Gilles},
title = {{PROMOT:} modular modeling for systems biology},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {687--689},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp029},
doi = {10.1093/BIOINFORMATICS/BTP029},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MirschelSRGG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MithaniPH09,
author = {Aziz Mithani and
Gail M. Preston and
Jotun Hein},
title = {A stochastic model for the evolution of metabolic networks with neighbor
dependence},
journal = {Bioinform.},
volume = {25},
number = {12},
pages = {1528--1535},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp262},
doi = {10.1093/BIOINFORMATICS/BTP262},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MithaniPH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MithaniPH09a,
author = {Aziz Mithani and
Gail M. Preston and
Jotun Hein},
title = {Rahnuma: hypergraph-based tool for metabolic pathway prediction and
network comparison},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1831--1832},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp269},
doi = {10.1093/BIOINFORMATICS/BTP269},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MithaniPH09a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MitraKH09,
author = {Suparna Mitra and
Bernhard Klar and
Daniel H. Huson},
title = {Visual and statistical comparison of metagenomes},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1849--1855},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp341},
doi = {10.1093/BIOINFORMATICS/BTP341},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MitraKH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MiyaoSSMT09,
author = {Yusuke Miyao and
Kenji Sagae and
Rune S{\ae}tre and
Takuya Matsuzaki and
Jun'ichi Tsujii},
title = {Evaluating contributions of natural language parsers to protein-protein
interaction extraction},
journal = {Bioinform.},
volume = {25},
number = {3},
pages = {394--400},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn631},
doi = {10.1093/BIOINFORMATICS/BTN631},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MiyaoSSMT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MondoER09,
author = {G{\'{e}}raldine Del Mondo and
Damien Eveillard and
Irena Rusu},
title = {Homogeneous decomposition of protein interaction networks: refining
the description of intra-modular interactions},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {926--932},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp083},
doi = {10.1093/BIOINFORMATICS/BTP083},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MondoER09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MorganALAPG09,
author = {Martin Morgan and
Simon Anders and
Michael F. Lawrence and
Patrick Aboyoun and
Herv{\'{e}} Pag{\`{e}}s and
Robert Gentleman},
title = {ShortRead: a bioconductor package for input, quality assessment and
exploration of high-throughput sequence data},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2607--2608},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp450},
doi = {10.1093/BIOINFORMATICS/BTP450},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MorganALAPG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MouraSPLHC09,
author = {Alexandra Moura and
M{\'{a}}rio Soares and
Carolina Pereira and
Nuno Leit{\~{a}}o and
Isabel Henriques and
Ant{\'{o}}nio Correia},
title = {{INTEGRALL:} a database and search engine for integrons, integrases
and gene cassettes},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {1096--1098},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp105},
doi = {10.1093/BIOINFORMATICS/BTP105},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MouraSPLHC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MudunuriCYS09,
author = {Uma Mudunuri and
Anney Che and
Ming Yi and
Robert M. Stephens},
title = {bioDBnet: the biological database network},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {555--556},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn654},
doi = {10.1093/BIOINFORMATICS/BTN654},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MudunuriCYS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MukherjeePNKZSGS09,
author = {Sach Mukherjee and
Steven Pelech and
Richard M. Neve and
Wen{-}Lin Kuo and
Safiyyah Ziyad and
Paul T. Spellman and
Joe W. Gray and
Terence P. Speed},
title = {Sparse combinatorial inference with an application in cancer biology},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {265--271},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn611},
doi = {10.1093/BIOINFORMATICS/BTN611},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MukherjeePNKZSGS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MyasnikovaSPSR09,
author = {Ekaterina M. Myasnikova and
Svetlana Surkova and
Lena Panok and
Maria Samsonova and
John Reinitz},
title = {Estimation of errors introduced by confocal imaging into the data
on segmentation gene expression in \emph{Drosophila}},
journal = {Bioinform.},
volume = {25},
number = {3},
pages = {346--352},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn620},
doi = {10.1093/BIOINFORMATICS/BTN620},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MyasnikovaSPSR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MyersBJKMN09,
author = {Chris J. Myers and
Nathan A. Barker and
Kevin R. Jones and
Hiroyuki Kuwahara and
Curtis Madsen and
Nam{-}Phuong D. Nguyen},
title = {iBioSim: a tool for the analysis and design of genetic circuits},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2848--2849},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp457},
doi = {10.1093/BIOINFORMATICS/BTP457},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MyersBJKMN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NamCKLL09,
author = {Hojung Nam and
Bong Chul Chung and
Younghoon Kim and
Ki Young Lee and
Doheon Lee},
title = {Combining tissue transcriptomics and urine metabolomics for breast
cancer biomarker identification},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3151--3157},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp558},
doi = {10.1093/BIOINFORMATICS/BTP558},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NamCKLL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NamKJCKCCP09,
author = {Seong{-}Hyeuk Nam and
Dae{-}Won Kim and
Tae{-}Sung Jung and
Young{-}Sang Choi and
Dong{-}Wook Kim and
Han{-}Suk Choi and
Sang{-}Haeng Choi and
Hong{-}Seog Park},
title = {{PESTAS:} a web server for {EST} analysis and sequence mining},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1846--1848},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp293},
doi = {10.1093/BIOINFORMATICS/BTP293},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NamKJCKCCP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NamkungKYCKP09,
author = {Junghyun Namkung and
Kyunga Kim and
Sung{-}Gon Yi and
Wonil Chung and
Min{-}Seok Kwon and
Taesung Park},
title = {New evaluation measures for multifactor dimensionality reduction classifiers
in gene-gene interaction analysis},
journal = {Bioinform.},
volume = {25},
number = {3},
pages = {338--345},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn629},
doi = {10.1093/BIOINFORMATICS/BTN629},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NamkungKYCKP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NawrockiKE09,
author = {Eric P. Nawrocki and
Diana L. Kolbe and
Sean R. Eddy},
title = {Infernal 1.0: inference of {RNA} alignments},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1335--1337},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp157},
doi = {10.1093/BIOINFORMATICS/BTP157},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NawrockiKE09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NawrockiKE09a,
author = {Eric P. Nawrocki and
Diana L. Kolbe and
Sean R. Eddy},
title = {Infernal 1.0: inference of {RNA} alignments},
journal = {Bioinform.},
volume = {25},
number = {13},
pages = {1713},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp326},
doi = {10.1093/BIOINFORMATICS/BTP326},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NawrockiKE09a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NeeleyKCB09,
author = {E. Shannon Neeley and
Steven M. Kornblau and
Kevin R. Coombes and
Keith A. Baggerly},
title = {Variable slope normalization of reverse phase protein arrays},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1384--1389},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp174},
doi = {10.1093/BIOINFORMATICS/BTP174},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NeeleyKCB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NeronMMJMLCTL09,
author = {Bertrand N{\'{e}}ron and
Herv{\'{e}} M{\'{e}}nager and
Corinne Maufrais and
Nicolas Joly and
Julien Maupetit and
S{\'{e}}bastien Letort and
S{\'{e}}bastien Carr{\`{e}}re and
Pierre Tuff{\'{e}}ry and
Catherine Letondal},
title = {Mobyle: a new full web bioinformatics framework},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {3005--3011},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp493},
doi = {10.1093/BIOINFORMATICS/BTP493},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NeronMMJMLCTL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NetzerMOPPVVB09,
author = {Michael Netzer and
Gunda Millonig and
Melanie Osl and
Bernhard Pfeifer and
Siegfried Praun and
Johannes Villinger and
Wolfgang Vogel and
Christian Baumgartner},
title = {A new ensemble-based algorithm for identifying breath gas marker candidates
in liver disease using ion molecule reaction mass spectrometry},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {941--947},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp093},
doi = {10.1093/BIOINFORMATICS/BTP093},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NetzerMOPPVVB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Neuwald09,
author = {Andrew F. Neuwald},
title = {Rapid detection, classification and accurate alignment of up to a
million or more related protein sequences},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1869--1875},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp342},
doi = {10.1093/BIOINFORMATICS/BTP342},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Neuwald09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Neuwald09a,
author = {Andrew F. Neuwald},
title = {Rapid detection, classification and accurate alignment of up to a
million or more related protein sequences},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {3047},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp573},
doi = {10.1093/BIOINFORMATICS/BTP573},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Neuwald09a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NeveolMA09,
author = {Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and
James G. Mork and
Alan R. Aronson},
title = {Comment on 'MeSH-up: effective MeSH text classification for improved
document retrieval'},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2770--2771},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp483},
doi = {10.1093/BIOINFORMATICS/BTP483},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NeveolMA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NgLL09,
author = {Ka{-}Lok Ng and
Hsueh{-}Chuan Liu and
Shan{-}Chih Lee},
title = {ncRNAppi - a tool for identifying disease-related miRNA and siRNA
targeting pathways},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3199--3201},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp574},
doi = {10.1093/BIOINFORMATICS/BTP574},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NgLL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NicodemusM09,
author = {Kristin K. Nicodemus and
James D. Malley},
title = {Predictor correlation impacts machine learning algorithms: implications
for genomic studies},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1884--1890},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp331},
doi = {10.1093/BIOINFORMATICS/BTP331},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NicodemusM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NicolHBBRL09,
author = {John W. Nicol and
Gregg A. Helt and
Steven G. Blanchard Jr. and
Archana Raja and
Ann E. Loraine},
title = {The Integrated Genome Browser: free software for distribution and
exploration of genome-scale datasets},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2730--2731},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp472},
doi = {10.1093/BIOINFORMATICS/BTP472},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NicolHBBRL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NicolasLRRJB09,
author = {Pierre Nicolas and
Aur{\'{e}}lie Leduc and
St{\'{e}}phane Robin and
Simon Rasmussen and
Hanne Jarmer and
Philippe Bessi{\`{e}}res},
title = {Transcriptional landscape estimation from tiling array data using
a model of signal shift and drift},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2341--2347},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp395},
doi = {10.1093/BIOINFORMATICS/BTP395},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NicolasLRRJB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NieuwerburghGVD09,
author = {Filip Van Nieuwerburgh and
Els Goetghebeur and
Mado Vandewoestyne and
Dieter Deforce},
title = {Impact of allelic dropout on evidential value of forensic {DNA} profiles
using {RMNE}},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {225--229},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn608},
doi = {10.1093/BIOINFORMATICS/BTN608},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NieuwerburghGVD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NikolskiS09,
author = {Macha Nikolski and
David James Sherman},
title = {Family relationships: should consensus reign? - consensus clustering
for protein families},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2294},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp440},
doi = {10.1093/BIOINFORMATICS/BTP440},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NikolskiS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NilssonJACE09,
author = {Bj{\"{o}}rn Nilsson and
Mikael Johansson and
F{\'{a}}tima Al{-}Shahrour and
Anne E. Carpenter and
Benjamin L. Ebert},
title = {Ultrasome: efficient aberration caller for copy number studies of
ultra-high resolution},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {1078--1079},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp091},
doi = {10.1093/BIOINFORMATICS/BTP091},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NilssonJACE09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NishidaMYAO09,
author = {Hiromi Nishida and
Takayuki Motoyama and
Shogo Yamamoto and
Hiroyuki Aburatani and
Hiroyuki Osada},
title = {Genome-wide maps of mono- and di-nucleosomes of \emph{Aspergillus
fumigatus}},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2295--2297},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp413},
doi = {10.1093/BIOINFORMATICS/BTP413},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NishidaMYAO09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NishimaQHK09,
author = {Wataru Nishima and
Guoying Qi and
Steven Hayward and
Akio Kitao},
title = {{DTA:} dihedral transition analysis for characterization of the effects
of large main-chain dihedral changes in proteins},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {628--635},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp032},
doi = {10.1093/BIOINFORMATICS/BTP032},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NishimaQHK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OConnorM09,
author = {Timothy D. O'Connor and
Nicholas I. Mundy},
title = {Genotype-phenotype associations: substitution models to detect evolutionary
associations between phenotypic variables and genotypic evolutionary
rate},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp231},
doi = {10.1093/BIOINFORMATICS/BTP231},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OConnorM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ODushlaineKHSGMC09,
author = {Colm O'Dushlaine and
Elaine Kenny and
Elizabeth A. Heron and
Ricardo Segurado and
Michael Gill and
Derek W. Morris and
Aiden P. Corvin},
title = {The {SNP} ratio test: pathway analysis of genome-wide association
datasets},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2762--2763},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp448},
doi = {10.1093/BIOINFORMATICS/BTP448},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ODushlaineKHSGMC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OlariuCBTGAK09,
author = {Victor Olariu and
Daniel Coca and
Stephen A. Billings and
Peter Tonge and
Paul Gokhale and
Peter W. Andrews and
Visakan Kadirkamanathan},
title = {Modified variational Bayes {EM} estimation of hidden Markov tree model
of cell lineages},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2824--2830},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp456},
doi = {10.1093/BIOINFORMATICS/BTP456},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OlariuCBTGAK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OlivaTP09,
author = {Romina Oliva and
Janet M. Thornton and
Marialuisa Pellegrini{-}Calace},
title = {PoreLogo: a new tool to analyse, visualize and compare channels in
transmembrane proteins},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3183--3184},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp545},
doi = {10.1093/BIOINFORMATICS/BTP545},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OlivaTP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Pan09,
author = {Wei Pan},
title = {Network-based multiple locus linkage analysis of expression traits},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1390--1396},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp177},
doi = {10.1093/BIOINFORMATICS/BTP177},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Pan09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PapadopoulosAMRH09,
author = {Giorgos L. Papadopoulos and
Panagiotis Alexiou and
Manolis Maragkakis and
Martin Reczko and
Artemis G. Hatzigeorgiou},
title = {DIANA-mirPath: Integrating human and mouse microRNAs in pathways},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1991--1993},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp299},
doi = {10.1093/BIOINFORMATICS/BTP299},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PapadopoulosAMRH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PapeKV09,
author = {Utz J. Pape and
Holger Klein and
Martin Vingron},
title = {Statistical detection of cooperative transcription factors with similarity
adjustment},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2103--2109},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp143},
doi = {10.1093/BIOINFORMATICS/BTP143},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PapeKV09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParkKTLKK09,
author = {Peter J. Park and
Sek Won Kong and
Toma Tebaldi and
Weil R. Lai and
Simon Kasif and
Isaac S. Kohane},
title = {Integration of heterogeneous expression data sets extends the role
of the retinol pathway in diabetes and insulin resistance},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3121--3127},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp559},
doi = {10.1093/BIOINFORMATICS/BTP559},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParkKTLKK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PasaniucSKH09,
author = {Bogdan Pasaniuc and
Sriram Sankararaman and
Gad Kimmel and
Eran Halperin},
title = {Inference of locus-specific ancestry in closely related populations},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp197},
doi = {10.1093/BIOINFORMATICS/BTP197},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PasaniucSKH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PatenHBB09,
author = {Benedict Paten and
Javier Herrero and
Kathryn Beal and
Ewan Birney},
title = {Sequence progressive alignment, a framework for practical large-scale
probabilistic consistency alignment},
journal = {Bioinform.},
volume = {25},
number = {3},
pages = {295--301},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn630},
doi = {10.1093/BIOINFORMATICS/BTN630},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PatenHBB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PavlopoulosMHSK09,
author = {Georgios A. Pavlopoulos and
Charalampos N. Moschopoulos and
Sean D. Hooper and
Reinhard Schneider and
Sophia Kossida},
title = {jClust: a clustering and visualization toolbox},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1994--1996},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp330},
doi = {10.1093/BIOINFORMATICS/BTP330},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PavlopoulosMHSK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PavlopoulosPKHS09,
author = {Georgios A. Pavlopoulos and
Evangelos Pafilis and
Michael Kuhn and
Sean D. Hooper and
Reinhard Schneider},
title = {OnTheFly: a tool for automated document-based text annotation, data
linking and network generation},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {977--978},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp081},
doi = {10.1093/BIOINFORMATICS/BTP081},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PavlopoulosPKHS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengLM09,
author = {Hanchuan Peng and
Fuhui Long and
Eugene W. Myers},
title = {{VANO:} a volume-object image annotation system},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {695--697},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp046},
doi = {10.1093/BIOINFORMATICS/BTP046},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PengLM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PersikovOS09,
author = {Anton V. Persikov and
Robert Osada and
Mona Singh},
title = {Predicting {DNA} recognition by Cys\({}_{\mbox{2}}\)His\({}_{\mbox{2}}\)
zinc finger proteins},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {22--29},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn580},
doi = {10.1093/BIOINFORMATICS/BTN580},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PersikovOS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PetersonKTP09,
author = {Eric L. Peterson and
Jan{\'{e}} Kondev and
Julie A. Theriot and
Rob Phillips},
title = {Reduced amino acid alphabets exhibit an improved sensitivity and selectivity
in fold assignment},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1356--1362},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp164},
doi = {10.1093/BIOINFORMATICS/BTP164},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PetersonKTP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PettiferTMABBHMV09,
author = {Steve Pettifer and
David Thorne and
Philip McDermott and
Terri K. Attwood and
J. Baran and
Jan Christian Bryne and
Taavi Hupponen and
D. Mowbray and
Gert Vriend},
title = {An active registry for bioinformatics web services},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2090--2091},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp329},
doi = {10.1093/BIOINFORMATICS/BTP329},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PettiferTMABBHMV09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PignatelliSMGC09,
author = {Miguel Pignatelli and
Florenci Serras and
Andr{\'{e}}s Moya and
Roderic Guig{\'{o}} and
Montserrat Corominas},
title = {{CROC:} finding chromosomal clusters in eukaryotic genomes},
journal = {Bioinform.},
volume = {25},
number = {12},
pages = {1552--1553},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp248},
doi = {10.1093/BIOINFORMATICS/BTP248},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PignatelliSMGC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Pique-RegiOA09,
author = {Roger Pique{-}Regi and
Antonio Ortega and
Shahab Asgharzadeh},
title = {Joint estimation of copy number variation and reference intensities
on multiple {DNA} arrays using {GADA}},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1223--1230},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp119},
doi = {10.1093/BIOINFORMATICS/BTP119},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Pique-RegiOA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Pirinen09,
author = {Matti Pirinen},
title = {Estimating population haplotype frequencies from pooled {SNP} data
using incomplete database information},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3296--3302},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp584},
doi = {10.1093/BIOINFORMATICS/BTP584},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Pirinen09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PivaGNP09,
author = {Francesco Piva and
Matteo Giulietti and
Linda Nocchi and
Giovanni Principato},
title = {SpliceAid: a database of experimental {RNA} target motifs bound by
splicing proteins in humans},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1211--1213},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp124},
doi = {10.1093/BIOINFORMATICS/BTP124},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PivaGNP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PlanesB09,
author = {Francisco J. Planes and
John E. Beasley},
title = {An optimization model for metabolic pathways},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2723--2729},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp441},
doi = {10.1093/BIOINFORMATICS/BTP441},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PlanesB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PlyusninHK09,
author = {Ilya Plyusnin and
Liisa Holm and
Matti Kankainen},
title = {{LOCP} - locating pilus operons in Gram-positive bacteria},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1187--1188},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp127},
doi = {10.1093/BIOINFORMATICS/BTP127},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PlyusninHK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PodichetiGD09,
author = {Ram Podicheti and
Rajesh Gollapudi and
Qunfeng Dong},
title = {WebGBrowse - a web server for GBrowse},
journal = {Bioinform.},
volume = {25},
number = {12},
pages = {1550--1551},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp239},
doi = {10.1093/BIOINFORMATICS/BTP239},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PodichetiGD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PodwojskiFCPSSMSMUIR09,
author = {Katharina Podwojski and
Arno Fritsch and
Daniel C. Chamrad and
Wolfgang Paul and
Barbara Sitek and
Kai St{\"{u}}hler and
Petra Mutzel and
Christian Stephan and
Helmut E. Meyer and
Wolfgang Urfer and
Katja Ickstadt and
J{\"{o}}rg Rahnenf{\"{u}}hrer},
title = {Retention time alignment algorithms for {LC/MS} data must consider
non-linear shifts},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {758--764},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp052},
doi = {10.1093/BIOINFORMATICS/BTP052},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PodwojskiFCPSSMSMUIR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PohlSCSFC09,
author = {Andrew A. Pohl and
Charles W. Sugnet and
Tyson Clark and
Kayla E. Smith and
Pauline A. Fujita and
Melissa S. Cline},
title = {Affy exon tissues: exon levels in normal tissues in human, mouse and
rat},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2442--2443},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp414},
doi = {10.1093/BIOINFORMATICS/BTP414},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PohlSCSFC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Poleksic09,
author = {Aleksandar Poleksic},
title = {Algorithms for optimal protein structure alignment},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2751--2756},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp530},
doi = {10.1093/BIOINFORMATICS/BTP530},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Poleksic09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PommierCLHT09,
author = {Thomas Pommier and
Bj{\"{o}}rn Canb{\"{a}}ck and
Per Lundberg and
{\AA}ke Hagstr{\"{o}}m and
Anders Tunlid},
title = {{RAMI:} a tool for identification and characterization of phylogenetic
clusters in microbial communities},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {736--742},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp051},
doi = {10.1093/BIOINFORMATICS/BTP051},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PommierCLHT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PorzeliusBS09,
author = {Christine Porzelius and
Harald Binder and
Martin Schumacher},
title = {Parallelized prediction error estimation for evaluation of high-dimensional
models},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {827--829},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp062},
doi = {10.1093/BIOINFORMATICS/BTP062},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PorzeliusBS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PoundsC09,
author = {Stan Pounds and
Cheng Cheng},
title = {Erratum: sample size determination for the false discovery rate},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {698--699},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn661},
doi = {10.1093/BIOINFORMATICS/BTN661},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PoundsC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PoundsCCCPGRRDL09,
author = {Stan Pounds and
Cheng Cheng and
Xueyuan Cao and
Kristine R. Crews and
William Plunkett and
Varsha Gandhi and
Jeffrey Rubnitz and
Raul C. Ribeiro and
James R. Downing and
Jatinder Lamba},
title = {{PROMISE:} a tool to identify genomic features with a specific biologically
interesting pattern of associations with multiple endpoint variables},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2013--2019},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp357},
doi = {10.1093/BIOINFORMATICS/BTP357},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PoundsCCCPGRRDL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PoundsCMRSD09,
author = {Stan Pounds and
Cheng Cheng and
Charles Mullighan and
Susana C. Raimondi and
Sheila Shurtleff and
James R. Downing},
title = {Reference alignment of {SNP} microarray signals for copy number analysis
of tumors},
journal = {Bioinform.},
volume = {25},
number = {3},
pages = {315--321},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn624},
doi = {10.1093/BIOINFORMATICS/BTN624},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PoundsCMRSD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PreibischST09,
author = {Stephan Preibisch and
Stephan Saalfeld and
Pavel Tomancak},
title = {Globally optimal stitching of tiled 3D microscopic image acquisitions},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1463--1465},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp184},
doi = {10.1093/BIOINFORMATICS/BTP184},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PreibischST09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ProsperiDILZU09,
author = {Mattia C. F. Prosperi and
Roberto D'Autilia and
Francesca Incardona and
Andrea De Luca and
Maurizio Zazzi and
Giovanni Ulivi},
title = {Stochastic modelling of genotypic drug-resistance for human immunodeficiency
virus towards long-term combination therapy optimization},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {1040--1047},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn568},
doi = {10.1093/BIOINFORMATICS/BTN568},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ProsperiDILZU09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PugalenthiTSC09,
author = {Ganesan Pugalenthi and
E. Ke Tang and
Ponnuthurai N. Suganthan and
Saikat Chakrabarti},
title = {Identification of structurally conserved residues of proteins in absence
of structural homologs using neural network ensemble},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {204--210},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn618},
doi = {10.1093/BIOINFORMATICS/BTN618},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PugalenthiTSC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PyrkovCKNE09,
author = {Timothy V. Pyrkov and
Anton O. Chugunov and
Nikolay A. Krylov and
Dmitry E. Nolde and
Roman G. Efremov},
title = {{PLATINUM:} a web tool for analysis of hydrophobic/hydrophilic organization
of biomolecular complexes},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1201--1202},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp111},
doi = {10.1093/BIOINFORMATICS/BTP111},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PyrkovCKNE09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/QiZLS09,
author = {Qihao Qi and
Yingdong Zhao and
Ming{-}Chung Li and
Richard M. Simon},
title = {Non-negative matrix factorization of gene expression profiles: a plug-in
for BRB-ArrayTools},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {545--547},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp009},
doi = {10.1093/BIOINFORMATICS/BTP009},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/QiZLS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/QuSZYZ09,
author = {Wubin Qu and
Zhiyong Shen and
Dongsheng Zhao and
Yi Yang and
Chenggang Zhang},
title = {MFEprimer: multiple factor evaluation of the specificity of {PCR}
primers},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {276--278},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn614},
doi = {10.1093/BIOINFORMATICS/BTN614},
timestamp = {Tue, 13 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/QuSZYZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/QuonM09,
author = {Gerald T. Quon and
Quaid Morris},
title = {{ISOLATE:} a computational strategy for identifying the primary origin
of cancers using high-throughput sequencing},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2882--2889},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp378},
doi = {10.1093/BIOINFORMATICS/BTP378},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/QuonM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RahatALS09,
author = {Ofer Rahat and
Uri Alon and
Yaakov Levy and
Gideon Schreiber},
title = {Understanding hydrogen-bond patterns in proteins using network motifs},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {2921--2928},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp541},
doi = {10.1093/BIOINFORMATICS/BTP541},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RahatALS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Rajaram09,
author = {Satwik Rajaram},
title = {A novel meta-analysis method exploiting consistency of high-throughput
experiments},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {636--642},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp007},
doi = {10.1093/BIOINFORMATICS/BTP007},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Rajaram09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RamakrishnanVKPMM09,
author = {Smriti R. Ramakrishnan and
Christine Vogel and
Taejoon Kwon and
Luiz O. F. Penalva and
Edward M. Marcotte and
Daniel P. Miranker},
title = {Mining gene functional networks to improve mass-spectrometry-based
protein identification},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {2955--2961},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp461},
doi = {10.1093/BIOINFORMATICS/BTP461},
timestamp = {Thu, 29 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RamakrishnanVKPMM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RamakrishnanVPWLPMMM09,
author = {Smriti R. Ramakrishnan and
Christine Vogel and
John T. Prince and
Rong Wang and
Zhihua Li and
Luiz O. F. Penalva and
Margaret Myers and
Edward M. Marcotte and
Daniel P. Miranker},
title = {Integrating shotgun proteomics and mRNA expression data to improve
protein identification},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1397--1403},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp168},
doi = {10.1093/BIOINFORMATICS/BTP168},
timestamp = {Thu, 29 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RamakrishnanVPWLPMMM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RamanaG09,
author = {Jayashree Ramana and
Dinesh Gupta},
title = {ProtVirDB: a database of protozoan virulent proteins},
journal = {Bioinform.},
volume = {25},
number = {12},
pages = {1568--1569},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp258},
doi = {10.1093/BIOINFORMATICS/BTP258},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RamanaG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RambaldiC09,
author = {Davide Rambaldi and
Francesca D. Ciccarelli},
title = {FancyGene: dynamic visualization of gene structures and protein domain
architectures on genomic loci},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2281--2282},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp381},
doi = {10.1093/BIOINFORMATICS/BTP381},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RambaldiC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RamoSSBP09,
author = {Pauli R{\"{a}}m{\"{o}} and
Raphael Sacher and
Berend Snijder and
Boris Begemann and
Lucas Pelkmans},
title = {CellClassifier: supervised learning of cellular phenotypes},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {3028--3030},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp524},
doi = {10.1093/BIOINFORMATICS/BTP524},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RamoSSBP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RandhawaST09,
author = {Ranjit Randhawa and
Clifford A. Shaffer and
John J. Tyson},
title = {Model aggregation: a building-block approach to creating large macromolecular
regulatory networks},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3289--3295},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp581},
doi = {10.1093/BIOINFORMATICS/BTP581},
timestamp = {Sat, 27 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RandhawaST09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RaueKMBSKT09,
author = {Andreas Raue and
Clemens Kreutz and
Thomas Maiwald and
Julie Bachmann and
Marcel Schilling and
Ursula Klingm{\"{u}}ller and
Jens Timmer},
title = {Structural and practical identifiability analysis of partially observed
dynamical models by exploiting the profile likelihood},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1923--1929},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp358},
doi = {10.1093/BIOINFORMATICS/BTP358},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RaueKMBSKT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RauschKDWEDR09,
author = {Tobias Rausch and
Sergey Koren and
Gennady Denisov and
David Weese and
Anne{-}Katrin Emde and
Andreas D{\"{o}}ring and
Knut Reinert},
title = {A consistency-based consensus algorithm for \emph{de novo} and reference-guided
sequence assembly of short reads},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1118--1124},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp131},
doi = {10.1093/BIOINFORMATICS/BTP131},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RauschKDWEDR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RaynerRLBFHMWP09,
author = {Tim F. Rayner and
Faisal Ibne Rezwan and
Margus Lukk and
Xiangqun Zheng Bradley and
Anna Farne and
Ele Holloway and
James Malone and
Eleanor Williams and
Helen E. Parkinson},
title = {MAGETabulator, a suite of tools to support the microarray data format
{MAGE-TAB}},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {279--280},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn617},
doi = {10.1093/BIOINFORMATICS/BTN617},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RaynerRLBFHMWP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RevannaKD09,
author = {Kashi Vishwanath Revanna and
Vivek Krishnakumar and
Qunfeng Dong},
title = {A web-based software system for dynamic gene cluster comparison across
multiple genomes},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {956--957},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp078},
doi = {10.1093/BIOINFORMATICS/BTP078},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RevannaKD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Reyes-PalomaresMRCKDMMS09,
author = {Armando Reyes{-}Palomares and
Ra{\'{u}}l Monta{\~{n}}ez and
Alejandro Real{-}Chicharro and
Othmane Chniber and
Amine Kerzazi and
Ismael Navas{-}Delgado and
Miguel Angel Medina and
Jos{\'{e}} Francisco Aldana Montes and
Francisca S{\'{a}}nchez{-}Jim{\'{e}}nez},
title = {Systems biology metabolic modeling assistant: an ontology-based tool
for the integration of metabolic data in kinetic modeling},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {834--835},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp061},
doi = {10.1093/BIOINFORMATICS/BTP061},
timestamp = {Wed, 15 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Reyes-PalomaresMRCKDMMS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ReynoldsDJ09,
author = {Christopher Reynolds and
David Damerell and
Susan Jones},
title = {ProtorP: a protein-protein interaction analysis server},
journal = {Bioinform.},
volume = {25},
number = {3},
pages = {413--414},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn584},
doi = {10.1093/BIOINFORMATICS/BTN584},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ReynoldsDJ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RieberKEK09,
author = {Nora Rieber and
Bettina Knapp and
Roland Eils and
Lars Kaderali},
title = {RNAither, an automated pipeline for the statistical analysis of high-throughput
RNAi screens},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {678--679},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp014},
doi = {10.1093/BIOINFORMATICS/BTP014},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RieberKEK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RiesterSK09,
author = {Markus Riester and
Peter F. Stadler and
Konstantin Klemm},
title = {FRANz: reconstruction of wild multi-generation pedigrees},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2134--2139},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp064},
doi = {10.1093/BIOINFORMATICS/BTP064},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RiesterSK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RissmanMBDGP09,
author = {Anna I. Rissman and
Bob Mau and
Bryan S. Biehl and
Aaron E. Darling and
Jeremy D. Glasner and
Nicole T. Perna},
title = {Reordering contigs of draft genomes using the Mauve Aligner},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2071--2073},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp356},
doi = {10.1093/BIOINFORMATICS/BTP356},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RissmanMBDGP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RissoMCR09,
author = {Davide Risso and
Maria Sofia Massa and
Monica Chiogna and
Chiara Romualdi},
title = {A modified {LOESS} normalization applied to microRNA arrays: a comparative
evaluation},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2685--2691},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp443},
doi = {10.1093/BIOINFORMATICS/BTP443},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RissoMCR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RitchieCHTI09,
author = {Matthew E. Ritchie and
Benilton S. Carvalho and
Kurt N. Hetrick and
Simon Tavar{\'{e}} and
Rafael A. Irizarry},
title = {R/Bioconductor software for Illumina's Infinium whole-genome genotyping
BeadChips},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2621--2623},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp470},
doi = {10.1093/BIOINFORMATICS/BTP470},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RitchieCHTI09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RitzSSR09,
author = {Anna M. Ritz and
Gregory Shakhnarovich and
Arthur R. Salomon and
Benjamin J. Raphael},
title = {Discovery of phosphorylation motif mixtures in phosphoproteomics data},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {14--21},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn569},
doi = {10.1093/BIOINFORMATICS/BTN569},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RitzSSR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RizkBFS09,
author = {Aur{\'{e}}lien Rizk and
Gr{\'{e}}gory Batt and
Fran{\c{c}}ois Fages and
Sylvain Soliman},
title = {A general computational method for robustness analysis with applications
to synthetic gene networks},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp200},
doi = {10.1093/BIOINFORMATICS/BTP200},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RizkBFS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RochaSWD09,
author = {Jairo Rocha and
Joan Segura and
Richard C. Wilson and
Swagata Dasgupta},
title = {Flexible structural protein alignment by a sequence of local transformations},
journal = {Bioinform.},
volume = {25},
number = {13},
pages = {1625--1631},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp296},
doi = {10.1093/BIOINFORMATICS/BTP296},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RochaSWD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RockeITQD09,
author = {David M. Rocke and
Trey Ideker and
Olga G. Troyanskaya and
John Quackenbush and
Joaqu{\'{\i}}n Dopazo},
title = {Papers on normalization, variable selection, classification or clustering
of microarray data},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {701--702},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp038},
doi = {10.1093/BIOINFORMATICS/BTP038},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RockeITQD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Rodriguez-EstebanI09,
author = {Raul Rodriguez{-}Esteban and
Ivan Iossifov},
title = {Figure mining for biomedical research},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2082--2084},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp318},
doi = {10.1093/BIOINFORMATICS/BTP318},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Rodriguez-EstebanI09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RogersB09,
author = {Mark F. Rogers and
Asa Ben{-}Hur},
title = {The use of gene ontology evidence codes in preventing classifier assessment
bias},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1173--1177},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp122},
doi = {10.1093/BIOINFORMATICS/BTP122},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RogersB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RogersSGB09,
author = {Simon Rogers and
Richard A. Scheltema and
Mark A. Girolami and
Rainer Breitling},
title = {Probabilistic assignment of formulas to mass peaks in metabolomics
experiments},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {512--518},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn642},
doi = {10.1093/BIOINFORMATICS/BTN642},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RogersSGB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RoiderMOVH09,
author = {Helge G. Roider and
Thomas Manke and
Sean O'Keeffe and
Martin Vingron and
Stefan A. Haas},
title = {{PASTAA:} identifying transcription factors associated with sets of
co-regulated genes},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {435--442},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn627},
doi = {10.1093/BIOINFORMATICS/BTN627},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RoiderMOVH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RousseauGRN09,
author = {Christine Rousseau and
Mathieu Gonnet and
Marc Le Romancer and
Jacques Nicolas},
title = {{CRISPI:} a {CRISPR} interactive database},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3317--3318},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp586},
doi = {10.1093/BIOINFORMATICS/BTP586},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RousseauGRN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RuedaD09,
author = {Oscar M. Rueda and
Ram{\'{o}}n D{\'{\i}}az{-}Uriarte},
title = {RJaCGH: Bayesian analysis of aCGH arrays for detecting copy number
changes and recurrent regions},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1959--1960},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp307},
doi = {10.1093/BIOINFORMATICS/BTP307},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RuedaD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Rusconi09,
author = {Filippo Rusconi},
title = {\emph{massXpert 2}: a cross-platform software environment for polymer
chemistry modelling and simulation/analysis of mass spectrometric
data},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2741--2742},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp504},
doi = {10.1093/BIOINFORMATICS/BTP504},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Rusconi09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RuthsRN09,
author = {Troy A. Ruths and
Derek A. Ruths and
Luay Nakhleh},
title = {GS\({}^{\mbox{2}}\): an efficiently computable measure of GO-based
similarity of gene sets},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1178--1184},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp128},
doi = {10.1093/BIOINFORMATICS/BTP128},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RuthsRN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RuvinskyV09,
author = {Anatoly M. Ruvinsky and
Ilya A. Vakser},
title = {The ruggedness of protein-protein energy landscape and the cutoff
for 1/\emph{r}\({}^{\mbox{\emph{n}}}\) potentials},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1132--1136},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp108},
doi = {10.1093/BIOINFORMATICS/BTP108},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RuvinskyV09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RyanDLLK09,
author = {Michael C. Ryan and
Mark Diekhans and
Stephanie Lien and
Yun Liu and
Rachel Karchin},
title = {{LS-SNP/PDB:} annotated non-synonymous SNPs mapped to Protein Data
Bank structures},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1431--1432},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp242},
doi = {10.1093/BIOINFORMATICS/BTP242},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RyanDLLK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RyderSDJR09,
author = {Edward Ryder and
H. Spriggs and
E. Drummond and
Daniel St Johnston and
Steven Russell},
title = {The Flannotator - a gene and protein expression annotation tool for
\emph{Drosophila melanogaster}},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {548--549},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp012},
doi = {10.1093/BIOINFORMATICS/BTP012},
timestamp = {Fri, 15 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RyderSDJR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SaalfeldCHT09,
author = {Stephan Saalfeld and
Albert Cardona and
Volker Hartenstein and
Pavel Tomancak},
title = {{CATMAID:} collaborative annotation toolkit for massive amounts of
image data},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1984--1986},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp266},
doi = {10.1093/BIOINFORMATICS/BTP266},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SaalfeldCHT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SadreyevFTG09,
author = {Ruslan Sadreyev and
Jamison D. Feramisco and
Hensin Tsao and
Nick V. Grishin},
title = {Phenotypic categorization of genetic skin diseases reveals new relations
between phenotypes, genes and pathways},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {2891--2896},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp538},
doi = {10.1093/BIOINFORMATICS/BTP538},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SadreyevFTG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SadreyevSBG09,
author = {Ruslan Sadreyev and
Shuoyong Shi and
David Baker and
Nick V. Grishin},
title = {Structure similarity measure with penalty for close non-equivalent
residues},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1259--1263},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp148},
doi = {10.1093/BIOINFORMATICS/BTP148},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SadreyevSBG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SagotMM09,
author = {Marie{-}France Sagot and
B. J. Morrison McKay and
Gene Myers},
title = {{ISMB/ECCB} 2009 Stockholm},
journal = {Bioinform.},
volume = {25},
number = {12},
pages = {1570--1573},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp280},
doi = {10.1093/BIOINFORMATICS/BTP280},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SagotMM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SaitoYSASKM09,
author = {Taro L. Saito and
Jun Yoshimura and
Shin Sasaki and
Budrul Ahsan and
Atsushi Sasaki and
Reginaldo Kuroshu and
Shinichi Morishita},
title = {{UTGB} toolkit for personalized genome browsers},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1856--1861},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp350},
doi = {10.1093/BIOINFORMATICS/BTP350},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SaitoYSASKM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SandTH09,
author = {Olivier Sand and
Morgane Thomas{-}Chollier and
Jacques van Helden},
title = {Retrieve-ensembl-seq: user-friendly and large-scale retrieval of single
or multi-genome sequences from Ensembl},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2739--2740},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp519},
doi = {10.1093/BIOINFORMATICS/BTP519},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SandTH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SandalBBGS09,
author = {Massimo Sandal and
Fabrizio Benedetti and
Marco Brucale and
Alberto Gomez{-}Casado and
Bruno Samor{\`{\i}}},
title = {\emph{Hooke}: an open software platform for force spectroscopy},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1428--1430},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp180},
doi = {10.1093/BIOINFORMATICS/BTP180},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SandalBBGS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SanguinettiROA09,
author = {Guido Sanguinetti and
Andreas Ruttor and
Manfred Opper and
C{\'{e}}dric Archambeau},
title = {Switching regulatory models of cellular stress response},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1280--1286},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp138},
doi = {10.1093/BIOINFORMATICS/BTP138},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SanguinettiROA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Sansom09,
author = {Clare Sansom},
title = {{ISMB} 2008 conference report},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {144--146},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn619},
doi = {10.1093/BIOINFORMATICS/BTN619},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Sansom09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SantamariaT09,
author = {Rodrigo Santamar{\'{\i}}a and
Roberto Ther{\'{o}}n},
title = {Treevolution: visual analysis of phylogenetic trees},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1970--1971},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp333},
doi = {10.1093/BIOINFORMATICS/BTP333},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SantamariaT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SargolzaeiS09,
author = {Mehdi Sargolzaei and
Flavio S. Schenkel},
title = {QMSim: a large-scale genome simulator for livestock},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {680--681},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp045},
doi = {10.1093/BIOINFORMATICS/BTP045},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SargolzaeiS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SartorLM09,
author = {Maureen A. Sartor and
George D. Leikauf and
Mario Medvedovic},
title = {LRpath: a logistic regression approach for identifying enriched biological
groups in gene expression data},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {211--217},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn592},
doi = {10.1093/BIOINFORMATICS/BTN592},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SartorLM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Sato09,
author = {Naoki Sato},
title = {Gclust: \emph{trans}-kingdom classification of proteins using automatic
individual threshold setting},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {599--605},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp047},
doi = {10.1093/BIOINFORMATICS/BTP047},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Sato09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ScardoniPL09,
author = {Giovanni Scardoni and
Michele Petterlini and
Carlo Laudanna},
title = {Analyzing biological network parameters with CentiScaPe},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2857--2859},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp517},
doi = {10.1093/BIOINFORMATICS/BTP517},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ScardoniPL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchaferSMHID09,
author = {Martin Sch{\"{a}}fer and
Holger Schwender and
Sylvia Merk and
Claudia Haferlach and
Katja Ickstadt and
Martin Dugas},
title = {Integrated analysis of copy number alterations and gene expression:
a bivariate assessment of equally directed abnormalities},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3228--3235},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp592},
doi = {10.1093/BIOINFORMATICS/BTP592},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchaferSMHID09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ScharlL09,
author = {Theresa Scharl and
Friedrich Leisch},
title = {gcExplorer: interactive exploration of gene clusters},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {1089--1090},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp099},
doi = {10.1093/BIOINFORMATICS/BTP099},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ScharlL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Schatz09,
author = {Michael C. Schatz},
title = {CloudBurst: highly sensitive read mapping with MapReduce},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1363--1369},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp236},
doi = {10.1093/BIOINFORMATICS/BTP236},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Schatz09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchaubKSDBB09,
author = {Marc A. Schaub and
Irene M. Kaplow and
Marina Sirota and
Chuong B. Do and
Atul J. Butte and
Serafim Batzoglou},
title = {A Classifier-based approach to identify genetic similarities between
diseases},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp226},
doi = {10.1093/BIOINFORMATICS/BTP226},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchaubKSDBB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchillingerBK09,
author = {Christian Schillinger and
Prisca Boisguerin and
Gerd Krause},
title = {Domain Interaction Footprint: a multi-classification approach to predict
domain-peptide interactions},
journal = {Bioinform.},
volume = {25},
number = {13},
pages = {1632--1639},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp264},
doi = {10.1093/BIOINFORMATICS/BTP264},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchillingerBK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchmidtSBP09,
author = {Bertil Schmidt and
Ranjan Sinha and
Bryan Beresford{-}Smith and
Simon J. Puglisi},
title = {A fast hybrid short read fragment assembly algorithm},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2279--2280},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp374},
doi = {10.1093/BIOINFORMATICS/BTP374},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchmidtSBP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchroderSPSS09,
author = {Jan Schr{\"{o}}der and
Heiko Schr{\"{o}}der and
Simon J. Puglisi and
Ranjan Sinha and
Bertil Schmidt},
title = {{SHREC:} a short-read error correction method},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2157--2163},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp379},
doi = {10.1093/BIOINFORMATICS/BTP379},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchroderSPSS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchultheissBLKR09,
author = {Sebastian J. Schulthei{\ss} and
Wolfgang Busch and
Jan U. Lohmann and
Oliver Kohlbacher and
Gunnar R{\"{a}}tsch},
title = {{KIRMES:} kernel-based identification of regulatory modules in euchromatic
sequences},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2126--2133},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp278},
doi = {10.1093/BIOINFORMATICS/BTP278},
timestamp = {Sun, 31 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchultheissBLKR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchulzBHBM09,
author = {Stefan Schulz and
Elena Beisswanger and
L{\'{a}}szl{\'{o}} van den Hoek and
Olivier Bodenreider and
Erik M. van Mulligen},
title = {Alignment of the {UMLS} semantic network with BioTop: methodology
and assessment},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp194},
doi = {10.1093/BIOINFORMATICS/BTP194},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchulzBHBM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeifertKSG09,
author = {Michael Seifert and
Jens Keilwagen and
Marc Strickert and
Ivo Grosse},
title = {Utilizing gene pair orientations for HMM-based analysis of promoter
array ChIP-chip data},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2118--2125},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp276},
doi = {10.1093/BIOINFORMATICS/BTP276},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeifertKSG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SenfC09,
author = {Alexander Senf and
Xue{-}wen Chen},
title = {Identification of genes involved in the same pathways using a Hidden
Markov Model-based approach},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {2945--2954},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp521},
doi = {10.1093/BIOINFORMATICS/BTP521},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SenfC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeoKKC09,
author = {Chang H. Seo and
Jeong{-}Rae Kim and
Man{-}Sun Kim and
Kwang{-}Hyun Cho},
title = {Hub genes with positive feedbacks function as master switches in developmental
gene regulatory networks},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1898--1904},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp316},
doi = {10.1093/BIOINFORMATICS/BTP316},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeoKKC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShahCJAGHNM09,
author = {Sohrab P. Shah and
K{-}John Cheung Jr. and
Nathalie A. Johnson and
Guillaume Alain and
Randy D. Gascoyne and
Douglas E. Horsman and
Raymond T. Ng and
Kevin P. Murphy},
title = {Model-based clustering of array {CGH} data},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp205},
doi = {10.1093/BIOINFORMATICS/BTP205},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShahCJAGHNM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShamirWG09,
author = {Lior Shamir and
Catherine A. Wolkow and
Ilya G. Goldberg},
title = {Quantitative measurement of aging using image texture entropy},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3060--3063},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp571},
doi = {10.1093/BIOINFORMATICS/BTP571},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShamirWG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SharmaPZM09,
author = {Ashok Sharma and
Robert H. Podolsky and
Jieping Zhao and
Richard A. McIndoe},
title = {A modified hyperplane clustering algorithm allows for efficient and
accurate clustering of extremely large datasets},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1152--1157},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp123},
doi = {10.1093/BIOINFORMATICS/BTP123},
timestamp = {Tue, 16 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SharmaPZM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShenOL09,
author = {Ronglai Shen and
Adam B. Olshen and
Marc Ladanyi},
title = {Integrative clustering of multiple genomic data types using a joint
latent variable model with application to breast and lung cancer subtype
analysis},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {2906--2912},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp543},
doi = {10.1093/BIOINFORMATICS/BTP543},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShenOL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShinLML09,
author = {Hyunjin Shin and
Tao Liu and
Arjun K. Manrai and
Xiaole Shirley Liu},
title = {{CEAS:} \emph{cis}-regulatory element annotation system},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2605--2606},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp479},
doi = {10.1093/BIOINFORMATICS/BTP479},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShinLML09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SindiHBR09,
author = {Suzanne S. Sindi and
Elena Helman and
Ali Bashir and
Benjamin J. Raphael},
title = {A geometric approach for classification and comparison of structural
variants},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp208},
doi = {10.1093/BIOINFORMATICS/BTP208},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SindiHBR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SkareSE09,
author = {{\O}ivind Skare and
Nuala Sheehan and
Thore Egeland},
title = {Identification of distant family relationships},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2376--2382},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp418},
doi = {10.1093/BIOINFORMATICS/BTP418},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SkareSE09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmildeKBRE09,
author = {Age K. Smilde and
Henk A. L. Kiers and
S. Bijlsma and
C. M. Rubingh and
M. J. van Erk},
title = {Matrix correlations for high-dimensional data: the modified RV-coefficient},
journal = {Bioinform.},
volume = {25},
number = {3},
pages = {401--405},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn634},
doi = {10.1093/BIOINFORMATICS/BTN634},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmildeKBRE09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmithBCS09,
author = {Lucian P. Smith and
Frank T. Bergmann and
Deepak Chandran and
Herbert M. Sauro},
title = {Antimony: a modular model definition language},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2452--2454},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp401},
doi = {10.1093/BIOINFORMATICS/BTP401},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmithBCS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmithCHKHHXZ09,
author = {Andrew D. Smith and
Wen{-}Yu Chung and
Emily Hodges and
Jude Kendall and
Gregory J. Hannon and
James Hicks and
Zhenyu Xuan and
Michael Q. Zhang},
title = {Updates to the {RMAP} short-read mapping software},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2841--2842},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp533},
doi = {10.1093/BIOINFORMATICS/BTP533},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmithCHKHHXZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmithVBC09,
author = {Adam A. Smith and
Aaron L. Vollrath and
Christopher A. Bradfield and
Mark Craven},
title = {Clustered alignments of gene-expression time series data},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp206},
doi = {10.1093/BIOINFORMATICS/BTP206},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmithVBC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SohnKJP09,
author = {Insuk Sohn and
Jinseog Kim and
Sin{-}Ho Jung and
Changyi Park},
title = {Gradient lasso for Cox proportional hazards model},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1775--1781},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp322},
doi = {10.1093/BIOINFORMATICS/BTP322},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SohnKJP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SongKX09,
author = {Le Song and
Mladen Kolar and
Eric P. Xing},
title = {{KELLER:} estimating time-varying interactions between genes},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp192},
doi = {10.1093/BIOINFORMATICS/BTP192},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SongKX09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SongS09,
author = {Jimin Song and
Mona Singh},
title = {How and when should interactome-derived clusters be used to predict
functional modules and protein function?},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3143--3150},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp551},
doi = {10.1093/BIOINFORMATICS/BTP551},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SongS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SoranzoA09,
author = {Nicola Soranzo and
Claudio Altafini},
title = {{ERNEST:} a toolbox for chemical reaction network theory},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2853--2854},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp513},
doi = {10.1093/BIOINFORMATICS/BTP513},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SoranzoA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SpasicSMPK09,
author = {Irena Spasic and
Evangelos Simeonidis and
Hanan L. Messiha and
Norman W. Paton and
Douglas B. Kell},
title = {KiPar, a tool for systematic information retrieval regarding parameters
for kinetic modelling of yeast metabolic pathways},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1404--1411},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp175},
doi = {10.1093/BIOINFORMATICS/BTP175},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SpasicSMPK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SpriggsMNJ09,
author = {Ruth V. Spriggs and
Yoichi Murakami and
Haruki Nakamura and
Susan Jones},
title = {Protein function annotation from sequence: prediction of residues
interacting with {RNA}},
journal = {Bioinform.},
volume = {25},
number = {12},
pages = {1492--1497},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp257},
doi = {10.1093/BIOINFORMATICS/BTP257},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SpriggsMNJ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StatesAWBA09,
author = {David J. States and
Alexander S. Ade and
Zachary C. Wright and
Aaron V. Bookvich and
Brian D. Athey},
title = {MiSearch adaptive pubMed search tool},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {974--976},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn033},
doi = {10.1093/BIOINFORMATICS/BTN033},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StatesAWBA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SteeleTHS09,
author = {Emma Steele and
Allan Tucker and
Peter A. C. 't Hoen and
Martijn J. Schuemie},
title = {Literature-based priors for gene regulatory networks},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1768--1774},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp277},
doi = {10.1093/BIOINFORMATICS/BTP277},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SteeleTHS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SteglePMMH09,
author = {Oliver Stegle and
Linda Payet and
Jean{-}Louis Mergny and
David J. C. MacKay and
Julian Leon Huppert},
title = {Predicting and understanding the stability of G-quadruplexes},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp210},
doi = {10.1093/BIOINFORMATICS/BTP210},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SteglePMMH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SteinbissGSMK09,
author = {Sascha Steinbiss and
Gordon Gremme and
Christin Sch{\"{a}}rfer and
Malte Mader and
Stefan Kurtz},
title = {\emph{AnnotationSketch}: a genome annotation drawing library},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {533--534},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn657},
doi = {10.1093/BIOINFORMATICS/BTN657},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SteinbissGSMK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StenbergZJ09,
author = {J. Stenberg and
M. Zhang and
H. Ji},
title = {Disperse - a software system for design of selector probes for exon
resequencing applications},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {666--667},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp001},
doi = {10.1093/BIOINFORMATICS/BTP001},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StenbergZJ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StevensN09,
author = {John R. Stevens and
Gabriel Nicholas},
title = {\emph{metahdep}: meta-analysis of hierarchically dependent gene expression
studies},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2619--2620},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp468},
doi = {10.1093/BIOINFORMATICS/BTP468},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StevensN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StewartOR09,
author = {Andrew C. Stewart and
Brian Osborne and
Timothy D. Read},
title = {{DIYA:} a bacterial annotation pipeline for any genomics lab},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {962--963},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp097},
doi = {10.1093/BIOINFORMATICS/BTP097},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/StewartOR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StojmirovicY09,
author = {Aleksandar Stojmirovic and
Yi{-}Kuo Yu},
title = {{ITM} Probe: analyzing information flow in protein networks},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2447--2449},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp398},
doi = {10.1093/BIOINFORMATICS/BTP398},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StojmirovicY09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StratmannHG09,
author = {Dirk Stratmann and
Carine van Heijenoort and
Eric Guittet},
title = {NOE\emph{net}-Use of {NOE} networks for {NMR} resonance assignment
of proteins with known 3D structure},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {474--481},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn638},
doi = {10.1093/BIOINFORMATICS/BTN638},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StratmannHG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StreitLKZS09,
author = {Marc Streit and
Alexander Lex and
Michael Kalkusch and
Kurt Zatloukal and
Dieter Schmalstieg},
title = {Caleydo: connecting pathways and gene expression},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2760--2761},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp432},
doi = {10.1093/BIOINFORMATICS/BTP432},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StreitLKZS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StresTM09,
author = {Blaz Stres and
James M. Tiedje and
Bostjan Murovec},
title = {BEsTRF: a tool for optimal resolution of terminal-restriction fragment
length polymorphism analysis based on user-defined primer-enzyme-sequence
databases},
journal = {Bioinform.},
volume = {25},
number = {12},
pages = {1556--1558},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp254},
doi = {10.1093/BIOINFORMATICS/BTP254},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StresTM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SuchardR09,
author = {Marc A. Suchard and
Andrew Rambaut},
title = {Many-core algorithms for statistical phylogenetics},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1370--1376},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp244},
doi = {10.1093/BIOINFORMATICS/BTP244},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SuchardR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunJFWOCBKZ09,
author = {Jingchun Sun and
Peilin Jia and
Ayman H. Fanous and
Bradley Todd Webb and
Edwin J. C. G. van den Oord and
Xiangning Chen and
J{\'{o}}zsef Buksz{\'{a}}r and
Kenneth S. Kendler and
Zhongming Zhao},
title = {A multi-dimensional evidence-based candidate gene prioritization approach
for complex diseases-schizophrenia as a case},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2595--2602},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp428},
doi = {10.1093/BIOINFORMATICS/BTP428},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunJFWOCBKZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunLBEMM09,
author = {Hong Sun and
Karen Lemmens and
Tim Van den Bulcke and
Kristof Engelen and
Bart De Moor and
Kathleen Marchal},
title = {ViTraM: visualization of transcriptional modules},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2450--2451},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp400},
doi = {10.1093/BIOINFORMATICS/BTP400},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunLBEMM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunLZLLL09,
author = {Zhirong Sun and
Jie Luo and
Yun Zhou and
Junjie Luo and
Ke Liu and
Wenting Li},
title = {Exploring phenotype-associated modules in an oral cavity tumor using
an integrated framework},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {795--800},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp057},
doi = {10.1093/BIOINFORMATICS/BTP057},
timestamp = {Wed, 11 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunLZLLL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SurovtsovaSLKSK09,
author = {Irina Surovtsova and
Natalia Simus and
Thomas Lorenz and
Artjom K{\"{o}}nig and
Sven Sahle and
Ursula Kummer},
title = {Accessible methods for the dynamic time-scale decomposition of biochemical
systems},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2816--2823},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp451},
doi = {10.1093/BIOINFORMATICS/BTP451},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SurovtsovaSLKSK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SutterlinHDG09,
author = {Thomas S{\"{u}}tterlin and
Simone Huber and
Hartmut Dickhaus and
Niels Grabe},
title = {Modeling multi-cellular behavior in epidermal tissue homeostasis via
finite state machines in multi-agent systems},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2057--2063},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp361},
doi = {10.1093/BIOINFORMATICS/BTP361},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SutterlinHDG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SwainstonM09,
author = {Neil Swainston and
Pedro Mendes},
title = {libAnnotationSBML: a library for exploiting {SBML} annotations},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2292--2293},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp392},
doi = {10.1093/BIOINFORMATICS/BTP392},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SwainstonM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TabeiA09,
author = {Yasuo Tabei and
Kiyoshi Asai},
title = {A local multiple alignment method for detection of non-coding {RNA}
sequences},
journal = {Bioinform.},
volume = {25},
number = {12},
pages = {1498--1505},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp261},
doi = {10.1093/BIOINFORMATICS/BTP261},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TabeiA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TaherO09,
author = {Leila Taher and
Ivan Ovcharenko},
title = {Variable locus length in the human genome leads to ascertainment bias
in functional inference for non-coding elements},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {578--584},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp043},
doi = {10.1093/BIOINFORMATICS/BTP043},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TaherO09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TalaveraLT09,
author = {David Talavera and
Roman A. Laskowski and
Janet M. Thornton},
title = {WSsas: a web service for the annotation of functional residues through
structural homologues},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1192--1194},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp116},
doi = {10.1093/BIOINFORMATICS/BTP116},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TalaveraLT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TarcaDKHMKKKR09,
author = {Adi L. Tarca and
Sorin Draghici and
Purvesh Khatri and
Sonia S. Hassan and
Pooja Mittal and
Jung{-}Sun Kim and
Chong Jai Kim and
Juan Pedro Kusanovic and
Roberto Romero},
title = {A novel signaling pathway impact analysis},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {75--82},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn577},
doi = {10.1093/BIOINFORMATICS/BTN577},
timestamp = {Thu, 09 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TarcaDKHMKKKR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TaslimWYSPHLH09,
author = {Cenny Taslim and
Jiejun Wu and
Pearlly Yan and
Greg Singer and
Jeffrey D. Parvin and
Tim Hui{-}Ming Huang and
Shili Lin and
Kun Huang},
title = {Comparative study on ChIP-seq data: normalization and binding pattern
characterization},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2334--2340},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp384},
doi = {10.1093/BIOINFORMATICS/BTP384},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TaslimWYSPHLH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TerraponGMB09,
author = {Nicolas Terrapon and
Olivier Gascuel and
Eric Mar{\'{e}}chal and
Laurent Br{\'{e}}h{\'{e}}lin},
title = {Detection of new protein domains using co-occurrence: application
to \emph{Plasmodium falciparum}},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3077--3083},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp560},
doi = {10.1093/BIOINFORMATICS/BTP560},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TerraponGMB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Thomas09,
author = {Alun Thomas},
title = {A method and program for estimating graphical models for linkage disequilibrium
that scale linearly with the number of loci, and their application
to gene drop simulation},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1287--1292},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp146},
doi = {10.1093/BIOINFORMATICS/BTP146},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Thomas09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ThompsonSLG09,
author = {Reid F. Thompson and
Masako Suzuki and
Kevin W. Lau and
John M. Greally},
title = {A pipeline for the quantitative analysis of {CG} dinucleotide methylation
using mass spectrometry},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2164--2170},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp382},
doi = {10.1093/BIOINFORMATICS/BTP382},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ThompsonSLG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TianHK09,
author = {Ze Tian and
TaeHyun Hwang and
Rui Kuang},
title = {A hypergraph-based learning algorithm for classifying gene expression
and arrayCGH data with prior knowledge},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2831--2838},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp467},
doi = {10.1093/BIOINFORMATICS/BTP467},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TianHK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TianSLNCKWG09,
author = {Feng Tian and
Parantu K. Shah and
Xiangjun Liu and
Nicolas N. Negre and
Jia Chen and
Oleksiy Karpenko and
Kevin P. White and
Robert L. Grossman},
title = {Flynet: a genomic resource for \emph{Drosophila melanogaster} transcriptional
regulatory networks},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {3001--3004},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp469},
doi = {10.1093/BIOINFORMATICS/BTP469},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TianSLNCKWG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TongLMCT09,
author = {Joo Chuan Tong and
Shen Jean Lim and
Hon Cheng Muh and
Fook Tim Chew and
Martti T. Tammi},
title = {Allergen Atlas: a comprehensive knowledge center and analysis resource
for allergen information},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {979--980},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp077},
doi = {10.1093/BIOINFORMATICS/BTP077},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TongLMCT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TorkamaniS09,
author = {Ali Torkamani and
Nicholas J. Schork},
title = {Prestige centrality-based functional outlier detection in gene expression
analysis},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2222--2228},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp388},
doi = {10.1093/BIOINFORMATICS/BTP388},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TorkamaniS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Torres-GarciaZRJM09,
author = {Wandaliz Torres{-}Garc{\'{\i}}a and
Weiwen Zhang and
George C. Runger and
Roger H. Johnson and
Deirdre R. Meldrum},
title = {Integrative analysis of transcriptomic and proteomic data of \emph{Desulfovibrio
vulgaris}: a non-linear model to predict abundance of undetected proteins},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1905--1914},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp325},
doi = {10.1093/BIOINFORMATICS/BTP325},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Torres-GarciaZRJM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TranZMSKX09,
author = {Thao T. Tran and
Fengfeng Zhou and
Sarah Marshburn and
Mark Stead and
Sidney R. Kushner and
Ying Xu},
title = {\emph{De novo} computational prediction of non-coding {RNA} genes
in prokaryotic genomes},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {2897--2905},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp537},
doi = {10.1093/BIOINFORMATICS/BTP537},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TranZMSKX09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TrapnellPS09,
author = {Cole Trapnell and
Lior Pachter and
Steven L. Salzberg},
title = {TopHat: discovering splice junctions with RNA-Seq},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1105--1111},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp120},
doi = {10.1093/BIOINFORMATICS/BTP120},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TrapnellPS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TrieschniggPLJKR09,
author = {Dolf Trieschnigg and
Piotr Pezik and
Vivian Lee and
Franciska de Jong and
Wessel Kraaij and
Dietrich Rebholz{-}Schuhmann},
title = {MeSH Up: effective MeSH text classification for improved document
retrieval},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1412--1418},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp249},
doi = {10.1093/BIOINFORMATICS/BTP249},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TrieschniggPLJKR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TrieschniggPLJKR09a,
author = {Dolf Trieschnigg and
Piotr Pezik and
Vivian Lee and
Franciska de Jong and
Wessel Kraaij and
Dietrich Rebholz{-}Schuhmann},
title = {Response to comment on 'MeSH-up: effective MeSH text classification
for improved document retrieval'},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2772},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp484},
doi = {10.1093/BIOINFORMATICS/BTP484},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TrieschniggPLJKR09a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TsaiC09,
author = {Chen{-}An Tsai and
James J. Chen},
title = {Multivariate analysis of variance test for gene set analysis},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {897--903},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp098},
doi = {10.1093/BIOINFORMATICS/BTP098},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TsaiC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TsaiDLH09,
author = {Richard Tzong{-}Han Tsai and
Hong{-}Jie Dai and
Po{-}Ting Lai and
Chi{-}Hsin Huang},
title = {PubMed-EX: a web browser extension to enhance PubMed search with text
mining features},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {3031--3032},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp475},
doi = {10.1093/BIOINFORMATICS/BTP475},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TsaiDLH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TsoiBKZ09,
author = {Lam C. Tsoi and
Michael Boehnke and
Richard L. Klein and
W. Jim Zheng},
title = {Evaluation of genome-wide association study results through development
of ontology fingerprints},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1314--1320},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp158},
doi = {10.1093/BIOINFORMATICS/BTP158},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TsoiBKZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TuncbagGK09,
author = {Nurcan Tuncbag and
Attila G{\"{u}}rsoy and
Ozlem Keskin},
title = {Identification of computational hot spots in protein interfaces: combining
solvent accessibility and inter-residue potentials improves the accuracy},
journal = {Bioinform.},
volume = {25},
number = {12},
pages = {1513--1520},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp240},
doi = {10.1093/BIOINFORMATICS/BTP240},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TuncbagGK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/UcarBPW09,
author = {Duygu Ucar and
Andreas Beyer and
Srinivasan Parthasarathy and
Christopher T. Workman},
title = {Predicting functionality of protein-DNA interactions by integrating
diverse evidence},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp213},
doi = {10.1093/BIOINFORMATICS/BTP213},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/UcarBPW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/UlitskyS09,
author = {Igor Ulitsky and
Ron Shamir},
title = {Identifying functional modules using expression profiles and confidence-scored
protein interactions},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1158--1164},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp118},
doi = {10.1093/BIOINFORMATICS/BTP118},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/UlitskyS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/UrbanVSS09,
author = {Jan Urban and
Jan Vanek and
Jir{\'{\i}} Soukup and
Dalibor Stys},
title = {Expertomica metabolite profiling: getting more information from {LC-MS}
using the stochastic systems approach},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2764--2767},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp427},
doi = {10.1093/BIOINFORMATICS/BTP427},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/UrbanVSS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VanlierWQVHDYB09,
author = {Joep Vanlier and
Fan Wu and
Feng Qi and
Kalyan C. Vinnakota and
Yu Han and
Ranjan K. Dash and
F. Yang and
Daniel A. Beard},
title = {{BISEN:} Biochemical Simulation Environment},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {836--837},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp069},
doi = {10.1093/BIOINFORMATICS/BTP069},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VanlierWQVHDYB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VerspoorDCH09,
author = {Karin Verspoor and
Daniel Dvorkin and
K. Bretonnel Cohen and
Lawrence Hunter},
title = {Ontology quality assurance through analysis of term transformations},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp195},
doi = {10.1093/BIOINFORMATICS/BTP195},
timestamp = {Thu, 17 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VerspoorDCH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Vider-ShalitSMTLL09,
author = {Tal Vider{-}Shalit and
Ronit Sarid and
Kobi Maman and
Lea Tsaban and
Ran Levi and
Yoram Louzoun},
title = {Viruses selectively mutate their {CD8+} T-cell epitopes - a large-scale
immunomic analysis},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp221},
doi = {10.1093/BIOINFORMATICS/BTP221},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Vider-ShalitSMTLL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VienneGM09,
author = {Damien M. de Vienne and
Tatiana Giraud and
Olivier C. Martin},
title = {In response to comment on 'A congruence index for testing topological
similarity between trees'},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {150--151},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn535},
doi = {10.1093/BIOINFORMATICS/BTN535},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VienneGM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WaaijenborgZ09,
author = {Sandra Waaijenborg and
Aeilko H. Zwinderman},
title = {Correlating multiple SNPs and multiple disease phenotypes: penalized
non-linear canonical correlation analysis},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2764--2771},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp491},
doi = {10.1093/BIOINFORMATICS/BTP491},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WaaijenborgZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WabnikHKLJBKK09,
author = {Krzysztof Wabnik and
Torgeir R. Hvidsten and
Anna M. Kedzierska and
Jelle Van Leene and
Geert De Jaeger and
Gerrit T. S. Beemster and
Henryk Jan Komorowski and
Martin T. R. Kuiper},
title = {Gene expression trends and protein features effectively complement
each other in gene function prediction},
journal = {Bioinform.},
volume = {25},
number = {3},
pages = {322--330},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn625},
doi = {10.1093/BIOINFORMATICS/BTN625},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WabnikHKLJBKK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WaegeleDFMMR09,
author = {Brigitte Waegele and
Irmtraud Dunger{-}Kaltenbach and
Gisela Fobo and
Corinna Montrone and
Hans{-}Werner Mewes and
Andreas Ruepp},
title = {{CRONOS:} the cross-reference navigation server},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {141--143},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn590},
doi = {10.1093/BIOINFORMATICS/BTN590},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WaegeleDFMMR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WallachL09,
author = {Izhar Wallach and
Ryan H. Lilien},
title = {The protein-small-molecule database, a non-redundant structural resource
for the analysis of protein-ligand binding},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {615--620},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp035},
doi = {10.1093/BIOINFORMATICS/BTP035},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WallachL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WallachL09a,
author = {Izhar Wallach and
Ryan H. Lilien},
title = {Prediction of sub-cavity binding preferences using an adaptive physicochemical
structure representation},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp204},
doi = {10.1093/BIOINFORMATICS/BTP204},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WallachL09a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WanLZQ09,
author = {Jun Wan and
C. Jimmy Lin and
Donald J. Zack and
Jiang Qian},
title = {Relating periodicity of nucleosome organization and gene regulation},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1782--1788},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp323},
doi = {10.1093/BIOINFORMATICS/BTP323},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WanLZQ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangBSD09,
author = {Zhihui Wang and
Christina M. Birch and
Jonathan Sagotsky and
Thomas S. Deisboeck},
title = {Cross-scale, cross-pathway evaluation using an agent-based non-small
cell lung cancer model},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2389--2396},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp416},
doi = {10.1093/BIOINFORMATICS/BTP416},
timestamp = {Mon, 11 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangBSD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangHWMC09,
author = {Yingfeng Wang and
Zhibin Huang and
Yong Wu and
Russell L. Malmberg and
Liming Cai},
title = {{RNATOPS-W:} a web server for {RNA} structure searches of genomes},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {1080--1081},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp095},
doi = {10.1093/BIOINFORMATICS/BTP095},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangHWMC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangSG09,
author = {Yong Wang and
Ruslan Sadreyev and
Nick V. Grishin},
title = {{PROCAIN} server for remote protein sequence similarity search},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2076--2077},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp346},
doi = {10.1093/BIOINFORMATICS/BTP346},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangSG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangYYDL09,
author = {Xiangfeng Wang and
Zhihui Yu and
Xiaozeng Yang and
Xing Wang Deng and
Lei Li},
title = {Transcriptionally active gene fragments derived from potentially fast-evolving
donor genes in the rice genome},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1215--1218},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp147},
doi = {10.1093/BIOINFORMATICS/BTP147},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangYYDL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WardVDMEKL09,
author = {R. Matthew Ward and
Eric Venner and
Bryce Daines and
Stephen Murray and
Serkan Erdin and
David M. Kristensen and
Olivier Lichtarge},
title = {Evolutionary Trace Annotation Server: automated enzyme function prediction
in protein structures using 3D templates},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1426--1427},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp160},
doi = {10.1093/BIOINFORMATICS/BTP160},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WardVDMEKL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WarrenNH09,
author = {Ren{\'{e}} L. Warren and
Brad H. Nelson and
Robert A. Holt},
title = {Profiling model T-cell metagenomes with short reads},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {458--464},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp010},
doi = {10.1093/BIOINFORMATICS/BTP010},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WarrenNH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WaterhousePMCB09,
author = {Andrew M. Waterhouse and
James B. Procter and
David M. A. Martin and
Michele E. Clamp and
Geoffrey J. Barton},
title = {Jalview Version 2 - a multiple sequence alignment editor and analysis
workbench},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1189--1191},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp033},
doi = {10.1093/BIOINFORMATICS/BTP033},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WaterhousePMCB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WatkinsonA09,
author = {John Watkinson and
Dimitris Anastassiou},
title = {Synergy Disequilibrium Plots: graphical visualization of pairwise
synergies and redundancies of SNPs with respect to a phenotype},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1445--1446},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp159},
doi = {10.1093/BIOINFORMATICS/BTP159},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WatkinsonA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WebbHH09,
author = {Alex Webb and
John M. Hancock and
Christopher C. Holmes},
title = {Phylogenetic inference under recombination using Bayesian stochastic
topology selection},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {197--203},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn607},
doi = {10.1093/BIOINFORMATICS/BTN607},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WebbHH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WegrzynLLN09,
author = {Jill L. Wegrzyn and
Jennifer M. Lee and
John Liechty and
David B. Neale},
title = {PineSAP - sequence alignment and {SNP} identification pipeline},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2609--2610},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp477},
doi = {10.1093/BIOINFORMATICS/BTP477},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WegrzynLLN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeiSWH09,
author = {Zhi Wei and
Wenguang Sun and
Kai Wang and
Hakon Hakonarson},
title = {Multiple testing in genome-wide association studies via hidden Markov
models},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2802--2808},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp476},
doi = {10.1093/BIOINFORMATICS/BTP476},
timestamp = {Thu, 28 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeiSWH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WermterTH09,
author = {Joachim Wermter and
Katrin Tomanek and
Udo Hahn},
title = {High-performance gene name normalization with {GENO}},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {815--821},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp071},
doi = {10.1093/BIOINFORMATICS/BTP071},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WermterTH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WhalleyBB09,
author = {Jacqueline L. Whalley and
Stephen Brooks and
Robert G. Beiko},
title = {Radi{\'{e}}: visualizing taxon properties and parsimonious mappings
using a radial phylogenetic tree},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {672--673},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp044},
doi = {10.1093/BIOINFORMATICS/BTP044},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WhalleyBB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WhiteCSDZ09,
author = {Amanda M. White and
James R. Collett and
Shannon L. Seurynck{-}Servoss and
Don Simone Daly and
Richard C. Zangar},
title = {{ELISA-BASE:} an integrated bioinformatics tool for analyzing and
tracking {ELISA} microarray data},
journal = {Bioinform.},
volume = {25},
number = {12},
pages = {1566--1567},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp182},
doi = {10.1093/BIOINFORMATICS/BTP182},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WhiteCSDZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WhitefordSCRLZAB09,
author = {Nava Whiteford and
Tom Skelly and
Christina Curtis and
Matthew E. Ritchie and
Andrea L{\"{o}}hr and
Alexander Wait Zaranek and
Irina I. Abnizova and
Clive Brown},
title = {Swift: primary data analysis for the Illumina Solexa sequencing platform},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2194--2199},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp383},
doi = {10.1093/BIOINFORMATICS/BTP383},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WhitefordSCRLZAB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WielBEKMMSSTY09,
author = {Mark A. van de Wiel and
Rebecca Brosens and
Paul H. C. Eilers and
Candy Kumps and
Gerrit Meijer and
Bj{\"{o}}rn Menten and
Erik Sistermans and
Frank Speleman and
Marieke E. Timmerman and
Bauke Ylstra},
title = {Smoothing waves in array {CGH} tumor profiles},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1099--1104},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp132},
doi = {10.1093/BIOINFORMATICS/BTP132},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WielBEKMMSSTY09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WilczynskiD09,
author = {Bartek Wilczynski and
Norbert Dojer},
title = {BNFinder: exact and efficient method for learning Bayesian networks},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {286--287},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn505},
doi = {10.1093/BIOINFORMATICS/BTN505},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WilczynskiD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Williams-DeVaneWR09,
author = {ClarLynda R. Williams{-}DeVane and
Maritja A. Wolf and
Ann M. Richard},
title = {DSSTox chemical-index files for exposure-related experiments in ArrayExpress
and Gene Expression Omnibus: enabling toxico-chemogenomics data linkages},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {692--694},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp042},
doi = {10.1093/BIOINFORMATICS/BTP042},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Williams-DeVaneWR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WimalaratneHLCCN09,
author = {Sarala M. Wimalaratne and
Matt D. B. Halstead and
Catherine M. Lloyd and
Mike T. Cooling and
Edmund J. Crampin and
Poul M. F. Nielsen},
title = {A method for visualizing CellML models},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {3012--3019},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp495},
doi = {10.1093/BIOINFORMATICS/BTP495},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WimalaratneHLCCN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WimalaratneHLCN09,
author = {Sarala M. Wimalaratne and
Matt D. B. Halstead and
Catherine M. Lloyd and
Edmund J. Crampin and
Poul M. F. Nielsen},
title = {Biophysical annotation and representation of CellML models},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2263--2270},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp391},
doi = {10.1093/BIOINFORMATICS/BTP391},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WimalaratneHLCN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Wren09,
author = {Jonathan D. Wren},
title = {A global meta-analysis of microarray expression data to predict unknown
gene functions and estimate the literature-data divide},
journal = {Bioinform.},
volume = {25},
number = {13},
pages = {1694--1701},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp290},
doi = {10.1093/BIOINFORMATICS/BTP290},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Wren09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Wu09,
author = {Yufeng Wu},
title = {A practical method for exact computation of subtree prune and regraft
distance},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {190--196},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn606},
doi = {10.1093/BIOINFORMATICS/BTN606},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Wu09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuCBBW09,
author = {Long Yang Wu and
Hugh A. Chipman and
Shelley B. Bull and
Laurent Briollais and
Kesheng Wang},
title = {A Bayesian segmentation approach to ascertain copy number variations
at the population level},
journal = {Bioinform.},
volume = {25},
number = {13},
pages = {1669--1679},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp270},
doi = {10.1093/BIOINFORMATICS/BTP270},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuCBBW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuCHSL09,
author = {Tong Tong Wu and
Yi Fang Chen and
Trevor Hastie and
Eric M. Sobel and
Kenneth Lange},
title = {Genome-wide association analysis by lasso penalized logistic regression},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {714--721},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp041},
doi = {10.1093/BIOINFORMATICS/BTP041},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuCHSL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuLDDWBS09,
author = {Jiansheng Wu and
Hongde Liu and
Xueye Duan and
Yan Ding and
Hongtao Wu and
Yunfei Bai and
Xiao Sun},
title = {Prediction of DNA-binding residues in proteins from amino acid sequences
using a random forest model with a hybrid feature},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {30--35},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn583},
doi = {10.1093/BIOINFORMATICS/BTN583},
timestamp = {Wed, 08 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuLDDWBS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuLJ09,
author = {Xuebing Wu and
Qifang Liu and
Rui Jiang},
title = {Align human interactome with phenome to identify causative genes and
networks underlying disease families},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {98--104},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn593},
doi = {10.1093/BIOINFORMATICS/BTN593},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuLJ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuW09,
author = {X. Wu and
Mick Watson},
title = {{CORNA:} testing gene lists for regulation by microRNAs},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {832--833},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp059},
doi = {10.1093/BIOINFORMATICS/BTP059},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuZLYCW09,
author = {Ling{-}Yun Wu and
Xiaobo Zhou and
Fuhai Li and
Xiaorong Yang and
Chung{-}Che Chang and
Stephen T. C. Wong},
title = {Conditional random pattern algorithm for {LOH} inference and segmentation},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {61--67},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn561},
doi = {10.1093/BIOINFORMATICS/BTN561},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuZLYCW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuZWCL09,
author = {Michael C. Wu and
Lingsong Zhang and
Zhaoxi Wang and
David Christiani and
Xihong Lin},
title = {Sparse linear discriminant analysis for simultaneous testing for the
significance of a gene set/pathway and gene selection},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1145--1151},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp019},
doi = {10.1093/BIOINFORMATICS/BTP019},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuZWCL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiaJZZ09,
author = {Zhen Xia and
Gulei Jin and
Jun Zhu and
Ruhong Zhou},
title = {Using a mutual information-based site transition network to map the
genetic evolution of influenza {A/H3N2} virus},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2309--2317},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp423},
doi = {10.1093/BIOINFORMATICS/BTP423},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XiaJZZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiaMPSCW09,
author = {Xiaoqin Xia and
Michael McClelland and
Steffen Porwollik and
Wenzhi Song and
Xianling Cong and
Yipeng Wang},
title = {WebArrayDB: cross-platform microarray data analysis and public data
repository},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2425--2429},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp430},
doi = {10.1093/BIOINFORMATICS/BTP430},
timestamp = {Wed, 05 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XiaMPSCW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiaZSS09,
author = {Xuefeng Xia and
Song Zhang and
Yu Su and
Zhirong Sun},
title = {MICAlign: a sequence-to-structure alignment tool integrating multiple
sources of information in conditional random fields},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1433--1434},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp251},
doi = {10.1093/BIOINFORMATICS/BTP251},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XiaZSS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XieRB09,
author = {Xiaohui Xie and
Paul Rigor and
Pierre Baldi},
title = {MotifMap: a human genome-wide map of candidate regulatory motif sites},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {167--174},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn605},
doi = {10.1093/BIOINFORMATICS/BTN605},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XieRB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XieWS09,
author = {Yang Xie and
Xinlei Wang and
Michael Story},
title = {Statistical methods of background correction for Illumina BeadArray
data},
journal = {Bioinform.},
volume = {25},
number = {6},
pages = {751--757},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp040},
doi = {10.1093/BIOINFORMATICS/BTP040},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XieWS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XieXB09,
author = {Lei Xie and
Li Xie and
Philip E. Bourne},
title = {A unified statistical model to support local sequence order independent
similarity searching for ligand-binding sites and its application
to genome-based drug discovery},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp220},
doi = {10.1093/BIOINFORMATICS/BTP220},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XieXB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XinLBTFLHKN09,
author = {Fuxiao Xin and
Meng Li and
Curtis Balch and
Michael Thomson and
Meiyun Fan and
Yunlong Liu and
Scott M. Hammond and
Sun Kim and
Kenneth P. Nephew},
title = {Computational analysis of microRNA profiles and their target genes
suggests significant involvement in breast cancer antiestrogen resistance},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {430--434},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn646},
doi = {10.1093/BIOINFORMATICS/BTN646},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XinLBTFLHKN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuF09,
author = {Hua Xu and
Michael A. Freitas},
title = {Automated diagnosis of {LC-MS/MS} performance},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1341--1343},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp155},
doi = {10.1093/BIOINFORMATICS/BTP155},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuF09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YamanishiHKGK09,
author = {Yoshihiro Yamanishi and
Masahiro Hattori and
Masaaki Kotera and
Susumu Goto and
Minoru Kanehisa},
title = {E-zyme: predicting potential {EC} numbers from the chemical transformation
pattern of substrate-product pairs},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp223},
doi = {10.1093/BIOINFORMATICS/BTP223},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YamanishiHKGK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangEBK09,
author = {Lee{-}Wei Yang and
Eran Eyal and
Ivet Bahar and
Akio Kitao},
title = {Principal component analysis of native ensembles of biomolecular structures
(PCA{\_}NEST): insights into functional dynamics},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {606--614},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp023},
doi = {10.1093/BIOINFORMATICS/BTP023},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangEBK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangEBK09a,
author = {Lee{-}Wei Yang and
Eran Eyal and
Ivet Bahar and
Akio Kitao},
title = {Principal component analysis of native ensembles of biomolecular structures
(PCA{\_}NEST): insights into functional dynamics},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2147},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp396},
doi = {10.1093/BIOINFORMATICS/BTP396},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangEBK09a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangHWYXY09,
author = {Can Yang and
Zengyou He and
Xiang Wan and
Qiang Yang and
Hong Xue and
Weichuan Yu},
title = {SNPHarvester: a filtering-based approach for detecting epistatic interactions
in genome-wide association studies},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {504--511},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn652},
doi = {10.1093/BIOINFORMATICS/BTN652},
timestamp = {Mon, 23 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangHWYXY09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangLTFT09,
author = {Zheng Rong Yang and
Ganjana Lertmemongkolchai and
Gladys Tan and
Philip L. Felgner and
Richard W. Titball},
title = {A genetic programming approach for \emph{Burkholderia Pseudomallei}
diagnostic pattern discovery},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2256--2262},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp390},
doi = {10.1093/BIOINFORMATICS/BTP390},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangLTFT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangWLD09,
author = {Runqing Yang and
Xin Wang and
Jian Li and
Hong{-}Wen Deng},
title = {Bayesian robust analysis for genetic architecture of quantitative
traits},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {1033--1039},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn558},
doi = {10.1093/BIOINFORMATICS/BTN558},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangWLD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangXH09,
author = {Lun Yang and
Langlai Xu and
Lin He},
title = {A CitationRank algorithm inheriting Google technology designed to
highlight genes responsible for serious adverse drug reaction},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2244--2250},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp369},
doi = {10.1093/BIOINFORMATICS/BTP369},
timestamp = {Tue, 11 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangXH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangZJC09,
author = {Xuerui Yang and
Yang Zhou and
Rong Jin and
Christina Chan},
title = {Reconstruct modular phenotype-specific gene networks by knowledge-driven
matrix factorization},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2236--2243},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp376},
doi = {10.1093/BIOINFORMATICS/BTP376},
timestamp = {Tue, 12 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangZJC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YanoverSZ09,
author = {Chen Yanover and
Mona Singh and
Elena Zaslavsky},
title = {\emph{M} are better than one: an ensemble-based motif finder and its
application to regulatory element prediction},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {868--874},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp090},
doi = {10.1093/BIOINFORMATICS/BTP090},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YanoverSZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YaragattiSU09,
author = {Mahesh Yaragatti and
Ted Sandler and
Lyle H. Ungar},
title = {A predictive model for identifying mini-regulatory modules in the
mouse genome},
journal = {Bioinform.},
volume = {25},
number = {3},
pages = {353--357},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn622},
doi = {10.1093/BIOINFORMATICS/BTN622},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YaragattiSU09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YeSLAN09,
author = {Kai Ye and
Marcel H. Schulz and
Quan Long and
Rolf Apweiler and
Zemin Ning},
title = {Pindel: a pattern growth approach to detect break points of large
deletions and medium sized insertions from paired-end short reads},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2865--2871},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp394},
doi = {10.1093/BIOINFORMATICS/BTP394},
timestamp = {Wed, 27 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YeSLAN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YenHL09,
author = {Kuo{-}Ho Yen and
Chung{-}Liang Ho and
Chiang Lee},
title = {The analysis of inconsistencies between cytogenetic annotations and
sequence mapping by defining the imprecision zones of cytogenetic
banding},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {845--852},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn649},
doi = {10.1093/BIOINFORMATICS/BTN649},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YenHL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YilmazJBPSD09,
author = {Saliha Yilmaz and
Philippe Jonveaux and
Cedric Bicep and
Laurent Pierron and
Malika Sma{\"{\i}}l{-}Tabbone and
Marie{-}Dominique Devignes},
title = {Gene-disease relationship discovery based on model-driven data integration
and database view definition},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {230--236},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn612},
doi = {10.1093/BIOINFORMATICS/BTN612},
timestamp = {Fri, 28 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YilmazJBPSD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YinJS09,
author = {Junming Yin and
Michael I. Jordan and
Yun S. Song},
title = {Joint estimation of gene conversion rates and mean conversion tract
lengths from population {SNP} data},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp229},
doi = {10.1093/BIOINFORMATICS/BTP229},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YinJS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YipG09,
author = {Kevin Y. Yip and
Mark Gerstein},
title = {Training set expansion: an approach to improving the reconstruction
of biological networks from limited and uneven reliable interactions},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {243--250},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn602},
doi = {10.1093/BIOINFORMATICS/BTN602},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YipG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Youens-ClarkFYSW09,
author = {Ken Youens{-}Clark and
Benjamin Faga and
Immanuel Yap and
Lincoln Stein and
Doreen Ware},
title = {CMap 1.01: a comparative mapping application for the Internet},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {3040--3042},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp458},
doi = {10.1093/BIOINFORMATICS/BTP458},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Youens-ClarkFYSW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuF09,
author = {Jingkai Yu and
Russell L. Finley Jr.},
title = {Combining multiple positive training sets to generate confidence scores
for protein-protein interactions},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {105--111},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn597},
doi = {10.1093/BIOINFORMATICS/BTN597},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuF09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuPJJ09,
author = {Tianwei Yu and
Youngja Park and
Jennifer M. Johnson and
Dean P. Jones},
title = {apLCMS - adaptive processing of high-resolution {LC/MS} data},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1930--1936},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp291},
doi = {10.1093/BIOINFORMATICS/BTP291},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuPJJ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuraH09,
author = {Kei Yura and
Steven Hayward},
title = {The interwinding nature of protein-protein interfaces and its implication
for protein complex formation},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3108--3113},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp563},
doi = {10.1093/BIOINFORMATICS/BTP563},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuraH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZaburannyyOF09,
author = {Nestor Zaburannyy and
Bohdan Ostash and
Victor Fedorenko},
title = {{TTA} Lynx: a web-based service for analysis of actinomycete genes
containing rare {TTA} codon},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2432--2433},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp402},
doi = {10.1093/BIOINFORMATICS/BTP402},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZaburannyyOF09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZamarTED09,
author = {David Zamar and
Ben W. Tripp and
George Ellis and
Denise Daley},
title = {Path: a tool to facilitate pathway-based genetic association analysis},
journal = {Bioinform.},
volume = {25},
number = {18},
pages = {2444--2446},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp431},
doi = {10.1093/BIOINFORMATICS/BTP431},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZamarTED09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZamparoP09,
author = {Lee Zamparo and
Theodore J. Perkins},
title = {Statistical lower bounds on protein copy number from fluorescence
expression images},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2670--2676},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp415},
doi = {10.1093/BIOINFORMATICS/BTP415},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZamparoP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZangSZCZP09,
author = {Chongzhi Zang and
Dustin E. Schones and
Chen Zeng and
Kairong Cui and
Keji Zhao and
Weiqun Peng},
title = {A clustering approach for identification of enriched domains from
histone modification ChIP-Seq data},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1952--1958},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp340},
doi = {10.1093/BIOINFORMATICS/BTP340},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZangSZCZP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZaslavskiyBV09,
author = {Mikhail Zaslavskiy and
Francis R. Bach and
Jean{-}Philippe Vert},
title = {Global alignment of protein-protein interaction networks by graph
matching methods},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp196},
doi = {10.1093/BIOINFORMATICS/BTP196},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZaslavskiyBV09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZenCPM09,
author = {Andrea Zen and
Cesira de Chiara and
Annalisa Pastore and
Cristian Micheletti},
title = {Using dynamics-based comparisons to predict nucleic acid binding sites
in proteins: an application to OB-fold domains},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1876--1883},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp339},
doi = {10.1093/BIOINFORMATICS/BTP339},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZenCPM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZengAD09,
author = {Jia Zeng and
Reda Alhajj and
Douglas J. Demetrick},
title = {Adaptive multi-agent architecture for functional sequence motifs recognition},
journal = {Bioinform.},
volume = {25},
number = {23},
pages = {3084--3092},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp567},
doi = {10.1093/BIOINFORMATICS/BTP567},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZengAD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Zhang09,
author = {Zhu{-}Jin Zhang},
title = {DV-Curve: a novel intuitive tool for visualizing and analyzing {DNA}
sequences},
journal = {Bioinform.},
volume = {25},
number = {9},
pages = {1112--1117},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp130},
doi = {10.1093/BIOINFORMATICS/BTP130},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Zhang09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangH09,
author = {Xiaohua Douglas Zhang and
Joseph F. Heyse},
title = {Determination of sample size in genome-scale RNAi screens},
journal = {Bioinform.},
volume = {25},
number = {7},
pages = {841--844},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp082},
doi = {10.1093/BIOINFORMATICS/BTP082},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangLN09,
author = {Hao Zhang and
Claus Lundegaard and
Morten Nielsen},
title = {Pan-specific {MHC} class {I} predictors: a benchmark of {HLA} class
{I} pan-specific prediction methods},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {83--89},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn579},
doi = {10.1093/BIOINFORMATICS/BTN579},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangLN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangLN09a,
author = {Hao Zhang and
Ole Lund and
Morten Nielsen},
title = {The PickPocket method for predicting binding specificities for receptors
based on receptor pocket similarities: application to MHC-peptide
binding},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1293--1299},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp137},
doi = {10.1093/BIOINFORMATICS/BTP137},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangLN09a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangLRZXZHCW09,
author = {Bai Zhang and
Huai Li and
Rebecca B. Riggins and
Ming Zhan and
Jianhua Xuan and
Zhen Zhang and
Eric P. Hoffman and
Robert Clarke and
Yue Joseph Wang},
title = {Differential dependency network analysis to identify condition-specific
topological changes in biological networks},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {526--532},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn660},
doi = {10.1093/BIOINFORMATICS/BTN660},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangLRZXZHCW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangSY09,
author = {Shijie Zhang and
Wei Su and
Jiong Yang},
title = {ARCS-Motif: discovering correlated motifs from unaligned biological
sequences},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {183--189},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn609},
doi = {10.1093/BIOINFORMATICS/BTN609},
timestamp = {Sun, 31 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangSY09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangW09,
author = {Jitao David Zhang and
Stefan Wiemann},
title = {KEGGgraph: a graph approach to {KEGG} {PATHWAY} in {R} and bioconductor},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1470--1471},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp167},
doi = {10.1093/BIOINFORMATICS/BTP167},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangWBZWDL09,
author = {Chen Zhang and
Chunguo Wu and
Enrico Blanzieri and
You Zhou and
Yan Wang and
Wei Du and
Yanchun Liang},
title = {Methods for labeling error detection in microarrays based on the effect
of data perturbation on the regression model},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2708--2714},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp478},
doi = {10.1093/BIOINFORMATICS/BTP478},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangWBZWDL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangWMLMC09,
author = {Li Zhang and
Qingyi Wei and
Li Mao and
Wenbin Liu and
Gordon B. Mills and
Kevin R. Coombes},
title = {Serial dilution curve: a new method for analysis of reverse phase
protein array data},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {650--654},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn663},
doi = {10.1093/BIOINFORMATICS/BTN663},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangWMLMC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangZZYXLWWWG09,
author = {Min Zhang and
Lin Zhang and
Jinfeng Zou and
Chen Yao and
Hui Xiao and
Qing Liu and
Jing Wang and
Dong Wang and
Chenguang Wang and
Zheng Guo},
title = {Evaluating reproducibility of differential expression discoveries
in microarray studies by considering correlated molecular changes},
journal = {Bioinform.},
volume = {25},
number = {13},
pages = {1662--1668},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp295},
doi = {10.1093/BIOINFORMATICS/BTP295},
timestamp = {Thu, 06 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangZZYXLWWWG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhaoK09,
author = {Quanyu Zhao and
Hiroyuki Kurata},
title = {Genetic modification of flux for flux prediction of mutants},
journal = {Bioinform.},
volume = {25},
number = {13},
pages = {1702--1708},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp298},
doi = {10.1093/BIOINFORMATICS/BTP298},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhengLSWDZJ09,
author = {Mingyue Zheng and
Xiaomin Luo and
Qiancheng Shen and
Yong Wang and
Yun Du and
Weiliang Zhu and
Hualiang Jiang},
title = {Site of metabolism prediction for six biotransformations mediated
by cytochromes {P450}},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1251--1258},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp140},
doi = {10.1093/BIOINFORMATICS/BTP140},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhengLSWDZJ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhuZM09,
author = {Shanfeng Zhu and
Jia Zeng and
Hiroshi Mamitsuka},
title = {Enhancing {MEDLINE} document clustering by incorporating MeSH semantic
similarity},
journal = {Bioinform.},
volume = {25},
number = {15},
pages = {1944--1951},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp338},
doi = {10.1093/BIOINFORMATICS/BTP338},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhuZM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZuberS09,
author = {Verena Zuber and
Korbinian Strimmer},
title = {Gene ranking and biomarker discovery under correlation},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2700--2707},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp460},
doi = {10.1093/BIOINFORMATICS/BTP460},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZuberS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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