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@article{DBLP:journals/biodb/Afiqah-AlengHAM17,
author = {Nor Afiqah{-}Aleng and
Sarahani Harun and
Mohd Rusman Arief A.{-}Rahman and
Nor Azlan Nor Muhammad and
Zeti{-}Azura Mohamed{-}Hussein},
title = {PCOSBase: a manually curated database of polycystic ovarian syndrome},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax098},
year = {2017},
url = {https://doi.org/10.1093/database/bax098},
doi = {10.1093/DATABASE/BAX098},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/Afiqah-AlengHAM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/AksoyDSMJGNJCSG17,
author = {B{\"{u}}lent Arman Aksoy and
Vlado Danc{\'{\i}}k and
Kenneth Smith and
Jessica N. Mazerik and
Zhou Ji and
Benjamin E. Gross and
Olga Nikolova and
Nadia Jaber and
Andrea Califano and
Stuart L. Schreiber and
Daniela S. Gerhard and
Leandro Hermida and
Subhashini Jagu and
Chris Sander and
Aris Floratos and
Paul A. Clemons},
title = {{CTD2} Dashboard: a searchable web interface to connect validated
results from the Cancer Target Discovery and Development Network},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax054},
year = {2017},
url = {https://doi.org/10.1093/database/bax054},
doi = {10.1093/DATABASE/BAX054},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/AksoyDSMJGNJCSG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/AlvarezVGBLM17,
author = {Roberto Vera Alvarez and
Newton Medeiros Vidal and
Gina A. Garz{\'{o}}n{-}Mart{\'{\i}}nez and
Luz S. Barrero and
David Landsman and
Leonardo Mari{\~{n}}o{-}Ram{\'{\i}}rez},
title = {Workflow and web application for annotating {NCBI} BioProject transcriptome
data},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax008},
year = {2017},
url = {https://doi.org/10.1093/database/bax008},
doi = {10.1093/DATABASE/BAX008},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/AlvarezVGBLM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ArifinMVRBC17,
author = {S. M. Niaz Arifin and
Gregory R. Madey and
Alexander Vyushkov and
Benoit Raybaud and
Thomas R. Burkot and
Frank H. Collins},
title = {An online analytical processing multi-dimensional data warehouse for
malaria data},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax073},
year = {2017},
url = {https://doi.org/10.1093/database/bax073},
doi = {10.1093/DATABASE/BAX073},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/ArifinMVRBC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ArmitHVMB17,
author = {Chris Armit and
Bill Hill and
Shanmugasundaram Venkataraman and
Kenneth McLeod and
Albert Burger and
Richard A. Baldock},
title = {The 'straight mouse': defining anatomical axes in 3D embryo models},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax010},
year = {2017},
url = {https://doi.org/10.1093/database/bax010},
doi = {10.1093/DATABASE/BAX010},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/ArmitHVMB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/AydinHO17,
author = {Ferhat Aydin and
Zehra Melce H{\"{u}}s{\"{u}}nbeyi and
Arzucan {\"{O}}zg{\"{u}}r},
title = {Automatic query generation using word embeddings for retrieving passages
describing experimental methods},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {baw166},
year = {2017},
url = {https://doi.org/10.1093/database/baw166},
doi = {10.1093/DATABASE/BAW166},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/AydinHO17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/BadaVBHH17,
author = {Michael Bada and
Nicole A. Vasilevsky and
William A. Baumgartner Jr. and
Melissa A. Haendel and
Lawrence E. Hunter},
title = {Gold-standard ontology-based anatomical annotation in the {CRAFT}
Corpus},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax087},
year = {2017},
url = {https://doi.org/10.1093/database/bax087},
doi = {10.1093/DATABASE/BAX087},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/BadaVBHH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/Balderas-Martinez17,
author = {Yalbi Itzel Balderas{-}Mart{\'{\i}}nez and
Fabio Rinaldi and
Gabriela Contreras and
Hilda Solano{-}Lira and
Mishael S{\'{a}}nchez{-}P{\'{e}}rez and
Julio Collado{-}Vides and
Mois{\'{e}}s Selman and
Annie Pardo},
title = {Improving biocuration of microRNAs in diseases: a case study in idiopathic
pulmonary fibrosis},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax030},
year = {2017},
url = {https://doi.org/10.1093/database/bax030},
doi = {10.1093/DATABASE/BAX030},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/Balderas-Martinez17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/Blanco-MiguezGF17,
author = {Aitor Blanco{-}M{\'{\i}}guez and
Alberto Guti{\'{e}}rrez{-}J{\'{a}}come and
Florentino Fdez{-}Riverola and
An{\'{a}}lia Louren{\c{c}}o and
Borja S{\'{a}}nchez},
title = {{MAHMI} database: a comprehensive MetaHit-based resource for the study
of the mechanism of action of the human microbiota},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {baw157},
year = {2017},
url = {https://doi.org/10.1093/database/baw157},
doi = {10.1093/DATABASE/BAW157},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/Blanco-MiguezGF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/BouadjenekV17,
author = {Mohamed Reda Bouadjenek and
Karin Verspoor},
title = {Multi-field query expansion is effective for biomedical dataset retrieval},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax062},
year = {2017},
url = {https://doi.org/10.1093/database/bax062},
doi = {10.1093/DATABASE/BAX062},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/BouadjenekV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/BouadjenekVZ17,
author = {Mohamed Reda Bouadjenek and
Karin Verspoor and
Justin Zobel},
title = {Literature consistency of bioinformatics sequence databases is effective
for assessing record quality},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax021},
year = {2017},
url = {https://doi.org/10.1093/database/bax021},
doi = {10.1093/DATABASE/BAX021},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/BouadjenekVZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/CamposPC17,
author = {Lu{\'{\i}}s Campos and
Vasco Pedro and
Francisco M. Couto},
title = {Impact of translation on named-entity recognition in radiology texts},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax064},
year = {2017},
url = {https://doi.org/10.1093/database/bax064},
doi = {10.1093/DATABASE/BAX064},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/CamposPC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/CarneiroRP17,
author = {Jo{\~{a}}o Carneiro and
Adriana Resende and
Filipe Pereira},
title = {The {HIV} oligonucleotide database (HIVoligoDB)},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax005},
year = {2017},
url = {https://doi.org/10.1093/database/bax005},
doi = {10.1093/DATABASE/BAX005},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/CarneiroRP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ChallisKSB17,
author = {Richard J. Challis and
Sujai Kumar and
Lewis Stevens and
Mark L. Blaxter},
title = {GenomeHubs: simple containerized setup of a custom Ensembl database
and web server for any species},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax039},
year = {2017},
url = {https://doi.org/10.1093/database/bax039},
doi = {10.1093/DATABASE/BAX039},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/ChallisKSB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ChangDSWROCHO17,
author = {Nai{-}Wen Chang and
Hong{-}Jie Dai and
Yung{-}Yu Shih and
Chi{-}Yang Wu and
Mira Anne C. dela Rosa and
Rofeamor P. Obena and
Yu{-}Ju Chen and
Wen{-}Lian Hsu and
Yen{-}Jen Oyang},
title = {Biomarker identification of hepatocellular carcinoma using a methodical
literature mining strategy},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax082},
year = {2017},
url = {https://doi.org/10.1093/database/bax082},
doi = {10.1093/DATABASE/BAX082},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/ChangDSWROCHO17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/CheemaRK17,
author = {Asma N. Cheema and
Samantha L. Rosenthal and
M. Ilyas Kamboh},
title = {Proficiency of data interpretation: identification of signaling SNPs/specific
loci for coronary artery disease},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax078},
year = {2017},
url = {https://doi.org/10.1093/database/bax078},
doi = {10.1093/DATABASE/BAX078},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/CheemaRK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ChenHAZWFS17,
author = {Ming Chen and
Nathan Henry and
Abdullah Almsaeed and
Xiao Zhou and
Jill L. Wegrzyn and
Stephen P. Ficklin and
Margaret Staton},
title = {New extension software modules to enhance searching and display of
transcriptome data in Tripal databases},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax052},
year = {2017},
url = {https://doi.org/10.1093/database/bax052},
doi = {10.1093/DATABASE/BAX052},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/ChenHAZWFS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ChenSZCWX17,
author = {Yaxin Chen and
Mijuan Shi and
Wanting Zhang and
Yingyin Cheng and
Yaping Wang and
Xiaoqin Xia},
title = {The Grass Carp Genome Database {(GCGD):} an online platform for genome
features and annotations},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax051},
year = {2017},
url = {https://doi.org/10.1093/database/bax051},
doi = {10.1093/DATABASE/BAX051},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/ChenSZCWX17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ChenSZLYAY17,
author = {Xing Chen and
Ya{-}Zhou Sun and
De{-}Hong Zhang and
Jian{-}Qiang Li and
Guiying Yan and
Ji{-}Yong An and
Zhu{-}Hong You},
title = {{NRDTD:} a database for clinically or experimentally supported non-coding
RNAs and drug targets associations},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax057},
year = {2017},
url = {https://doi.org/10.1093/database/bax057},
doi = {10.1093/DATABASE/BAX057},
timestamp = {Thu, 11 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/ChenSZLYAY17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ChenZV17,
author = {Qingyu Chen and
Justin Zobel and
Karin Verspoor},
title = {Duplicates, redundancies and inconsistencies in the primary nucleotide
databases: a descriptive study},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {baw163},
year = {2017},
url = {https://doi.org/10.1093/database/baw163},
doi = {10.1093/DATABASE/BAW163},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/ChenZV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ChoiW17,
author = {John A. Choi and
John J. Wyrick},
title = {RegulatorDB: a resource for the analysis of yeast transcriptional
regulation},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax058},
year = {2017},
url = {https://doi.org/10.1093/database/bax058},
doi = {10.1093/DATABASE/BAX058},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/ChoiW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/CohenRGCPAHDOX17,
author = {Trevor Cohen and
Kirk Roberts and
Anupama E. Gururaj and
Xiaoling Chen and
Saeid Pournejati and
George Alter and
William R. Hersh and
Dina Demner{-}Fushman and
Lucila Ohno{-}Machado and
Hua Xu},
title = {A publicly available benchmark for biomedical dataset retrieval: the
reference standard for the 2016 bioCADDIE dataset retrieval challenge},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax061},
year = {2017},
url = {https://doi.org/10.1093/database/bax061},
doi = {10.1093/DATABASE/BAX061},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/CohenRGCPAHDOX17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/CortazarOAL17,
author = {Ana Rosa Cort{\'{a}}zar and
Jos{\'{e}} A. Oguiza and
Ana M. Aransay and
Jos{\'{e}} Luis Lav{\'{\i}}n},
title = {VerSeDa: vertebrate secretome database},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {baw171},
year = {2017},
url = {https://doi.org/10.1093/database/baw171},
doi = {10.1093/DATABASE/BAW171},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/CortazarOAL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/DasJPC17,
author = {Sankha Subhra Das and
Mithun James and
Sandip Paul and
Nishant Chakravorty},
title = {miRnalyze: an interactive database linking tool to unlock intuitive
microRNA regulation of cell signaling pathways},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax015},
year = {2017},
url = {https://doi.org/10.1093/database/bax015},
doi = {10.1093/DATABASE/BAX015},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/DasJPC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/DengBKSP17,
author = {Mario Deng and
Johannes Br{\"{a}}gelmann and
Ivan Kryukov and
Nuno Saraiva{-}Agostinho and
Sven Perner},
title = {FirebrowseR: an {R} client to the Broad Institute's Firehose Pipeline},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {baw160},
year = {2017},
url = {https://doi.org/10.1093/database/baw160},
doi = {10.1093/DATABASE/BAW160},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/DengBKSP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/DingBLSTWVA17,
author = {Ruoyao Ding and
Emmanuel Boutet and
Damien Lieberherr and
Michel Schneider and
Michael Tognolli and
Cathy H. Wu and
K. Vijay{-}Shanker and
Cecilia N. Arighi},
title = {eGenPub, a text mining system for extending computationally mapped
bibliography for UniProt Knowledgebase by capturing centrality},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax081},
year = {2017},
url = {https://doi.org/10.1093/database/bax081},
doi = {10.1093/DATABASE/BAX081},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/DingBLSTWVA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/DingYLDDLWXZG017,
author = {Peng Ding and
Xin Yan and
Zhihong Liu and
Jiewen Du and
Yunfei Du and
Yutong Lu and
Di Wu and
Yuehua Xu and
Huihao Zhou and
Qiong Gu and
Jun Xu},
title = {{PTS:} a pharmaceutical target seeker},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax095},
year = {2017},
url = {https://doi.org/10.1093/database/bax095},
doi = {10.1093/DATABASE/BAX095},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/DingYLDDLWXZG017.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/DoganKCCO17,
author = {Rezarta Islamaj Dogan and
Sun Kim and
Andrew Chatr{-}aryamontri and
Christie S. Chang and
Rose Oughtred and
Jennifer M. Rust and
W. John Wilbur and
Donald C. Comeau and
Kara Dolinski and
Mike Tyers},
title = {The BioC-BioGRID corpus: full text articles annotated for curation
of protein-protein and genetic interactions},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {baw147},
year = {2017},
url = {https://doi.org/10.1093/database/baw147},
doi = {10.1093/DATABASE/BAW147},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/DoganKCCO17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/DorelVBZK17,
author = {Mathurin Dorel and
Eric Viara and
Emmanuel Barillot and
Andrei Yu. Zinovyev and
Inna Kuperstein},
title = {NaviCom: a web application to create interactive molecular network
portraits using multi-level omics data},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax026},
year = {2017},
url = {https://doi.org/10.1093/database/bax026},
doi = {10.1093/DATABASE/BAX026},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/DorelVBZK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/FangYHLW17,
author = {Zhonghai Fang and
Yichen Yang and
Yanshi Hu and
Ming D. Li and
Ju Wang},
title = {{GRONS:} a comprehensive genetic resource of nicotine and smoking},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax097},
year = {2017},
url = {https://doi.org/10.1093/database/bax097},
doi = {10.1093/DATABASE/BAX097},
timestamp = {Mon, 07 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/FangYHLW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/FishilevichNRHP17,
author = {Simon Fishilevich and
Ron Nudel and
Noa Rappaport and
Rotem Hadar and
Inbar Plaschkes and
Tsippi Iny Stein and
Naomi Rosen and
Asher Kohn and
Michal Twik and
Marilyn Safran and
Doron Lancet and
Dana Cohen},
title = {GeneHancer: genome-wide integration of enhancers and target genes
in GeneCards},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax028},
year = {2017},
url = {https://doi.org/10.1093/database/bax028},
doi = {10.1093/DATABASE/BAX028},
timestamp = {Wed, 06 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/FishilevichNRHP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/FrancoBMF17,
author = {Matheus Eloy Franco and
Tamires Aparecida Bitencourt and
Mozart Marins and
Ana L{\'{u}}cia Fachin},
title = {In silico characterization of tandem repeats in Trichophyton rubrum
and related dermatophytes provides new insights into their role in
pathogenesis},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax035},
year = {2017},
url = {https://doi.org/10.1093/database/bax035},
doi = {10.1093/DATABASE/BAX035},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/FrancoBMF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/GascCJP17,
author = {Cyrielle Gasc and
Antony Constantin and
Faouzi Jaziri and
Pierre Peyret},
title = {OCaPPI-Db: an oligonucleotide probe database for pathogen identification
through hybridization capture},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {baw172},
year = {2017},
url = {https://doi.org/10.1093/database/baw172},
doi = {10.1093/DATABASE/BAW172},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/GascCJP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/GerstlHRZB17,
author = {Matthias P. Gerstl and
Michael Hanscho and
David E. Ruckerbauer and
J{\"{u}}rgen Zanghellini and
Nicole Borth},
title = {CHOmine: an integrated data warehouse for {CHO} systems biology and
modeling},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax034},
year = {2017},
url = {https://doi.org/10.1093/database/bax034},
doi = {10.1093/DATABASE/BAX034},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/GerstlHRZB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/GuSQZ17,
author = {Jinghang Gu and
Fuqing Sun and
Longhua Qian and
Guodong Zhou},
title = {Chemical-induced disease relation extraction via convolutional neural
network},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax024},
year = {2017},
url = {https://doi.org/10.1093/database/bax024},
doi = {10.1093/DATABASE/BAX024},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/GuSQZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/GuntschHHCR17,
author = {Anton G{\"{u}}ntsch and
Roger Hyam and
Gregor Hagedorn and
Simon Chagnoux and
Dominik R{\"{o}}pert and
Ana Casino and
Gabi Droege and
Falko Gl{\"{o}}ckler and
Karsten G{\"{o}}dderz and
Quentin Groom and
Jana Hoffmann and
Ayco Holleman and
Mat{\'{u}}s Kempa and
Hanna Koivula and
Karol Marhold and
Nicky Nicolson and
Vincent S. Smith and
Dagmar Triebel},
title = {Actionable, long-term stable and semantic web compatible identifiers
for access to biological collection objects},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax003},
year = {2017},
url = {https://doi.org/10.1093/database/bax003},
doi = {10.1093/DATABASE/BAX003},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/GuntschHHCR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/Gutierrez-Sacristan17,
author = {Alba Guti{\'{e}}rrez{-}Sacrist{\'{a}}n and
{\`{A}}lex Bravo and
Marta Portero{-}Tresserra and
Olga Valverde and
Antonio Armario and
M. C. Blanco{-}Gand{\'{\i}}a and
Adriana Farr{\'{e}} and
Lierni Fern{\'{a}}ndez{-}Ibarrondo and
Francina Fonseca and
Jes{\'{u}}s Giraldo and
Angela Leis and
Anna Man{\'{e}} and
Miguel Angel Mayer and
Sandra Montagud{-}Romero and
Roser Nadal and
Jordi Ortiz and
Francisco Javier Pavon and
Ezequiel Perez and
Marta Rodr{\'{\i}}guez{-}Arias and
Antonia Serrano and
Marta Torrens and
Vincent Warnault and
Ferran Sanz and
Laura I. Furlong},
title = {Text mining and expert curation to develop a database on psychiatric
diseases and their genes},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax043},
year = {2017},
url = {https://doi.org/10.1093/database/bax043},
doi = {10.1093/DATABASE/BAX043},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/Gutierrez-Sacristan17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/HausenSBLRRRO17,
author = {Jonas Hausen and
Bj{\"{o}}rn Scholz{-}Starke and
Ulrich Burkhardt and
Stephan Lesch and
Sebastian Rick and
David Russell and
Martina Ro{\ss}{-}Nickoll and
Richard Ottermanns},
title = {Edaphostat: interactive ecological analysis of soil organism occurrences
and preferences from the Edaphobase data warehouse},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax080},
year = {2017},
url = {https://doi.org/10.1093/database/bax080},
doi = {10.1093/DATABASE/BAX080},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/HausenSBLRRRO17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/HellerstedtNWPW17,
author = {Sage T. Hellerstedt and
Robert S. Nash and
Shuai Weng and
Kelley M. Paskov and
Edith D. Wong and
Kalpana Karra and
Stacia R. Engel and
J. Michael Cherry},
title = {Curated protein information in the Saccharomyces genome database},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax011},
year = {2017},
url = {https://doi.org/10.1093/database/bax011},
doi = {10.1093/DATABASE/BAX011},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/HellerstedtNWPW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/HillSHH17,
author = {Steven T. Hill and
Ramcharan Sudarsanam and
John Henning and
David Hendrix},
title = {HopBase: a unified resource for Humulus genomics},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax009},
year = {2017},
url = {https://doi.org/10.1093/database/bax009},
doi = {10.1093/DATABASE/BAX009},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/HillSHH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/HinskeSOOKG17,
author = {Christian Hinske and
Felipe R. C. dos Santos and
Daniel T. Ohara and
Lucila Ohno{-}Machado and
Simone Kreth and
Pedro A. F. Galante},
title = {MiRIAD update: using alternative polyadenylation, protein interaction
network analysis and additional species to enhance exploration of
the role of intragenic miRNAs and their host genes},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax053},
year = {2017},
url = {https://doi.org/10.1093/database/bax053},
doi = {10.1093/DATABASE/BAX053},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/HinskeSOOKG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/HollidayBAMH17,
author = {Gemma L. Holliday and
Shoshana D. Brown and
Eyal Akiva and
David Mischel and
Michael A. Hicks and
John H. Morris and
Conrad C. Huang and
Elaine C. Meng and
Scott C.{-}H. Pegg and
Thomas E. Ferrin and
Patricia C. Babbitt},
title = {Biocuration in the structure-function linkage database: the anatomy
of a superfamily},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax006},
year = {2017},
url = {https://doi.org/10.1093/database/bax006},
doi = {10.1093/DATABASE/BAX006},
timestamp = {Wed, 23 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/HollidayBAMH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/HollidayBAMHMHM17,
author = {Gemma L. Holliday and
Shoshana D. Brown and
Eyal Akiva and
David Mischel and
Michael A. Hicks and
John H. Morris and
Conrad C. Huang and
Elaine C. Meng and
Scott C.{-}H. Pegg and
Thomas E. Ferrin and
Patricia C. Babbitt},
title = {Biocuration in the structure-function linkage database: the anatomy
of a superfamily},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax045},
year = {2017},
url = {https://doi.org/10.1093/database/bax045},
doi = {10.1093/DATABASE/BAX045},
timestamp = {Wed, 23 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/HollidayBAMHMHM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/HuQHD17,
author = {Wei Hu and
Honglei Qiu and
Jiacheng Huang and
Michel Dumontier},
title = {BioSearch: a semantic search engine for Bio2RDF},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax059},
year = {2017},
url = {https://doi.org/10.1093/database/bax059},
doi = {10.1093/DATABASE/BAX059},
timestamp = {Fri, 22 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/HuQHD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/JanfazaNKNZ17,
author = {Sajjad Janfaza and
Maryam Banan Nojavani and
Babak Khorsand and
Maryam Nikkhah and
Javad Zahiri},
title = {Cancer Odor Database {(COD):} a critical databank for cancer diagnosis
research},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax055},
year = {2017},
url = {https://doi.org/10.1093/database/bax055},
doi = {10.1093/DATABASE/BAX055},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/JanfazaNKNZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/JiangRBS17,
author = {Xiangying Jiang and
Martin Ringwald and
Judith A. Blake and
Hagit Shatkay},
title = {Effective biomedical document classification for identifying publications
relevant to the mouse Gene Expression Database {(GXD)}},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax017},
year = {2017},
url = {https://doi.org/10.1093/database/bax017},
doi = {10.1093/DATABASE/BAX017},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/JiangRBS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/JolleyBM17,
author = {Keith A. Jolley and
James E. Bray and
Martin C. J. Maiden},
title = {A RESTful application programming interface for the PubMLST molecular
typing and genome databases},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax060},
year = {2017},
url = {https://doi.org/10.1093/database/bax060},
doi = {10.1093/DATABASE/BAX060},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/JolleyBM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/JungLCFYHM17,
author = {Sook Jung and
Taein Lee and
Chun{-}Huai Cheng and
Stephen P. Ficklin and
Jing Yu and
Jodi L. Humann and
Dorrie Main},
title = {Extension modules for storage, visualization and querying of genomic,
genetic and breeding data in Tripal databases},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax092},
year = {2017},
url = {https://doi.org/10.1093/database/bax092},
doi = {10.1093/DATABASE/BAX092},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/JungLCFYHM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/JungeRGPS17,
author = {Alexander Junge and
Jan C. Refsgaard and
Christian Garde and
Xiaoyong Pan and
Alberto Santos and
Ferhat Alkan and
Christian Anthon and
Christian von Mering and
Christopher T. Workman and
Lars Juhl Jensen and
Jan Gorodkin},
title = {{RAIN:} RNA-protein Association and Interaction Networks},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {baw167},
year = {2017},
url = {https://doi.org/10.1093/database/baw167},
doi = {10.1093/DATABASE/BAW167},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/JungeRGPS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/KadamKJSK17,
author = {Kiran Kadam and
Rajiv Karbhal and
V. K. Jayaraman and
Sangeeta Sawant and
Urmila Kulkarni{-}Kale},
title = {AllerBase: a comprehensive allergen knowledgebase},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax066},
year = {2017},
url = {https://doi.org/10.1093/database/bax066},
doi = {10.1093/DATABASE/BAX066},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/KadamKJSK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/KudtarkarC17,
author = {Parul Kudtarkar and
R. Andrew Cameron},
title = {Echinobase: an expanding resource for echinoderm genomic information},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax074},
year = {2017},
url = {https://doi.org/10.1093/database/bax074},
doi = {10.1093/DATABASE/BAX074},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/KudtarkarC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/LefeverAVLVM17,
author = {Steve Lefever and
Jasper Anckaert and
Pieter{-}Jan Volders and
Manuel Luypaert and
Jo Vandesompele and
Pieter Mestdagh},
title = {decodeRNA - predicting non-coding {RNA} functions using guilt-by-association},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax042},
year = {2017},
url = {https://doi.org/10.1093/database/bax042},
doi = {10.1093/DATABASE/BAX042},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/LefeverAVLVM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/LiPVXL17,
author = {Tian Li and
Guo{-}Qing Pan and
Charles R. Vossbrinck and
Jin{-}Shan Xu and
Chunfeng Li and
Jie Chen and
Meng{-}Xian Long and
Ming Yang and
Xiaofei Xu and
Chen Xu and
Bettina A. Debrunner{-}Vossbrinck and
Zeyang Zhou},
title = {SilkPathDB: a comprehensive resource for the study of silkworm pathogens},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax001},
year = {2017},
url = {https://doi.org/10.1093/database/bax001},
doi = {10.1093/DATABASE/BAX001},
timestamp = {Tue, 03 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/LiPVXL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/LiRBW17,
author = {Fay{-}Wei Li and
Catherine A. Rushworth and
James B. Beck and
Michael D. Windham},
title = {Boechera microsatellite website: an online portal for species identification
and determination of hybrid parentage},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {baw169},
year = {2017},
url = {https://doi.org/10.1093/database/baw169},
doi = {10.1093/DATABASE/BAW169},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/LiRBW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/LiTFIHCSY17,
author = {Jin Li and
Ching{-}San Tseng and
Antonio Federico and
Franjo Ivankovic and
Yi{-}Shuian Huang and
Alfredo Ciccodicola and
Maurice S. Swanson and
Peng Yu},
title = {SFMetaDB: a comprehensive annotation of mouse {RNA} splicing factor
RNA-Seq datasets},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax071},
year = {2017},
url = {https://doi.org/10.1093/database/bax071},
doi = {10.1093/DATABASE/BAX071},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/LiTFIHCSY17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/LiuHWDLTGHL17,
author = {Yuan Liu and
Mengqi He and
Dan Wang and
Lihong Diao and
Jinying Liu and
Li Tang and
Shuzhen Guo and
Fuchu He and
Dong Li},
title = {HisgAtlas 1.0: a human immunosuppression gene database},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax094},
year = {2017},
url = {https://doi.org/10.1093/database/bax094},
doi = {10.1093/DATABASE/BAX094},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/LiuHWDLTGHL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/MacPhersonSWDH17,
author = {Kevin A. MacPherson and
Barry Starr and
Edith D. Wong and
Kyla S. Dalusag and
Sage T. Hellerstedt and
Olivia W. Lang and
Robert S. Nash and
Marek S. Skrzypek and
Stacia R. Engel and
J. Michael Cherry},
title = {Outreach and online training services at the Saccharomyces Genome
Database},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax002},
year = {2017},
url = {https://doi.org/10.1093/database/bax002},
doi = {10.1093/DATABASE/BAX002},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/MacPhersonSWDH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/MalhotraMBH17,
author = {Sony Malhotra and
Grace Mugumbate and
Tom L. Blundell and
Alicia P. Higueruelo},
title = {{TIBLE:} a web-based, freely accessible resource for small-molecule
binding data for mycobacterial species},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax041},
year = {2017},
url = {https://doi.org/10.1093/database/bax041},
doi = {10.1093/DATABASE/BAX041},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/MalhotraMBH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/McIlroyKMNK17,
author = {Simon Jon McIlroy and
Rasmus Hansen Kirkegaard and
Bianca McIlroy and
Marta Nierychlo and
Jannie Munk Kristensen and
S{\o}ren Michael Karst and
Mads Albertsen and
Per Halkj{\ae}r Nielsen},
title = {MiDAS 2.0: an ecosystem-specific taxonomy and online database for
the organisms of wastewater treatment systems expanded for anaerobic
digester groups},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax016},
year = {2017},
url = {https://doi.org/10.1093/database/bax016},
doi = {10.1093/DATABASE/BAX016},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/McIlroyKMNK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/Mendez-CruzGMCM17,
author = {Carlos{-}Francisco M{\'{e}}ndez{-}Cruz and
Socorro Gama{-}Castro and
Citlalli Mej{\'{\i}}a{-}Almonte and
Marco{-}Polo Castillo{-}Villalba and
Luis Mu{\~{n}}iz{-}Rascado and
Julio Collado{-}Vides},
title = {First steps in automatic summarization of transcription factor properties
for RegulonDB: classification of sentences about structural domains
and regulated processes},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax070},
year = {2017},
url = {https://doi.org/10.1093/database/bax070},
doi = {10.1093/DATABASE/BAX070},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/Mendez-CruzGMCM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/MottinPGLGMBGR17,
author = {Luc Mottin and
Emilie Pasche and
Julien Gobeill and
Valentine Rech de Laval and
Anne Gleizes and
Pierre{-}Andr{\'{e}} Michel and
Amos Bairoch and
Pascale Gaudet and
Patrick Ruch},
title = {Triage by ranking to support the curation of protein interactions},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax040},
year = {2017},
url = {https://doi.org/10.1093/database/bax040},
doi = {10.1093/DATABASE/BAX040},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/MottinPGLGMBGR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/NascimentoSLCPP17,
author = {Leandro Costa Nascimento and
Marcela Mendes Salazar and
Jorge Lepikson{-}Neto and
Eduardo Leal Oliveira Camargo and
Lucas Salera Parreiras and
Gon{\c{c}}alo Amarante Guimar{\~{a}}es Pereira and
Marcelo Falsarella Carazzolle},
title = {{EUCANEXT:} an integrated database for the exploration of genomic
and transcriptomic data from Eucalyptus species},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax079},
year = {2017},
url = {https://doi.org/10.1093/database/bax079},
doi = {10.1093/DATABASE/BAX079},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/NascimentoSLCPP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/NgHTT17,
author = {I{-}Man Ng and
Jia{-}Hsin Huang and
Shang{-}Chi Tsai and
Huai{-}Kuang Tsai},
title = {IsoPlot: a database for comparison of mRNA isoforms in fruit fly and
mosquitoes},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax069},
year = {2017},
url = {https://doi.org/10.1093/database/bax069},
doi = {10.1093/DATABASE/BAX069},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/NgHTT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/NiJKP17,
author = {Yueqiong Ni and
Kasper Jensen and
Irene Kouskoumvekaki and
Gianni Panagiotou},
title = {NutriChem 2.0: exploring the effect of plant-based foods on human
health and drug efficacy},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax044},
year = {2017},
url = {https://doi.org/10.1093/database/bax044},
doi = {10.1093/DATABASE/BAX044},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/NiJKP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/OliveiraBGSDSR17,
author = {Luciana M{\'{a}}rcia de Oliveira and
Raissa Nogueira de Brito and
Paul Anderson Souza Guimar{\~{a}}es and
R{\^{o}}mulo Vitor Mastr{\^{a}}ngelo Amaro dos Santos and
Lil{\'{e}}ia Gon{\c{c}}alves Diotaiuti and
Rita de C{\'{a}}ssia Moreira de Souza and
Jeronimo Concei{\c{c}}{\~{a}}o Ruiz},
title = {TriatoKey: a web and mobile tool for biodiversity identification of
Brazilian triatomine species},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax033},
year = {2017},
url = {https://doi.org/10.1093/database/bax033},
doi = {10.1093/DATABASE/BAX033},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/OliveiraBGSDSR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/PaleyK17,
author = {Suzanne M. Paley and
Peter D. Karp},
title = {Update notifications for the BioCyc collection of databases},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax086},
year = {2017},
url = {https://doi.org/10.1093/database/bax086},
doi = {10.1093/DATABASE/BAX086},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/PaleyK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/PandeyKG17,
author = {Rajan Pandey and
Pawan Kumar and
Dinesh Gupta},
title = {KiPho: malaria parasite kinome and phosphatome portal},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax063},
year = {2017},
url = {https://doi.org/10.1093/database/bax063},
doi = {10.1093/DATABASE/BAX063},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/PandeyKG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/Perez-PerezRFL17,
author = {Mart{\'{\i}}n P{\'{e}}rez{-}P{\'{e}}rez and
Gael P{\'{e}}rez Rodr{\'{\i}}guez and
Florentino Fdez{-}Riverola and
An{\'{a}}lia Louren{\c{c}}o},
title = {Collaborative relation annotation and quality analysis in Markyt environment},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax090},
year = {2017},
url = {https://doi.org/10.1093/database/bax090},
doi = {10.1093/DATABASE/BAX090},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/Perez-PerezRFL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/PosticGEG17,
author = {Guillaume Postic and
Yassine Ghouzam and
Catherine Etchebest and
Jean{-}Christophe Gelly},
title = {{TMPL:} a database of experimental and theoretical transmembrane protein
models positioned in the lipid bilayer},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax022},
year = {2017},
url = {https://doi.org/10.1093/database/bax022},
doi = {10.1093/DATABASE/BAX022},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/PosticGEG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/PutmanLBWDDMSWS17,
author = {Tim E. Putman and
Sebastien Lelong and
Sebastian Burgstaller{-}Muehlbacher and
Andra Waagmeester and
Colin M. Diesh and
Nathan A. Dunn and
Monica C. Munoz{-}Torres and
Gregory S. Stupp and
Chunlei Wu and
Andrew I. Su and
Benjamin M. Good},
title = {WikiGenomes: an open web application for community consumption and
curation of gene annotation data in Wikidata},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax025},
year = {2017},
url = {https://doi.org/10.1093/database/bax025},
doi = {10.1093/DATABASE/BAX025},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/PutmanLBWDDMSWS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/RavikumarRL17,
author = {K. E. Ravikumar and
Majid Rastegar{-}Mojarad and
Hongfang Liu},
title = {BELMiner: adapting a rule-based relation extraction system to extract
biological expression language statements from bio-medical literature
evidence sentences},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {baw156},
year = {2017},
url = {https://doi.org/10.1093/database/baw156},
doi = {10.1093/DATABASE/BAW156},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/RavikumarRL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/RinaldiLGSL17,
author = {Fabio Rinaldi and
Oscar Lithgow{-}Serrano and
Socorro Gama{-}Castro and
Hilda Solano{-}Lira and
Alejandra L{\'{o}}pez{-}Fuentes and
Luis Mu{\~{n}}iz{-}Rascado and
Cecilia Ishida{-}Guti{\'{e}}rrez and
Carlos{-}Francisco M{\'{e}}ndez{-}Cruz and
Julio Collado{-}Vides},
title = {Strategies towards digital and semi-automated curation in RegulonDB},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax012},
year = {2017},
url = {https://doi.org/10.1093/database/bax012},
doi = {10.1093/DATABASE/BAX012},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/RinaldiLGSL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/RinaldiLGSLMIMC17,
author = {Fabio Rinaldi and
Oscar Lithgow{-}Serrano and
Socorro Gama{-}Castro and
Hilda Solano{-}Lira and
Alejandra L{\'{o}}pez{-}Fuentes and
Luis Mu{\~{n}}iz{-}Rascado and
Cecilia Ishida{-}Guti{\'{e}}rrez and
Carlos{-}Francisco M{\'{e}}ndez{-}Cruz and
Julio Collado{-}Vides},
title = {Erratum: Strategies towards digital and semi-automated curation in
RegulonDB},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax012},
year = {2017},
url = {https://doi.org/10.1093/database/bax029},
doi = {10.1093/DATABASE/BAX029},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/RinaldiLGSLMIMC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/RobbertseSCGCDS17,
author = {Barbara Robbertse and
Pooja K. Strope and
Priscila Chaverri and
Romina Gazis and
Stacy Ciufo and
Michael Domrachev and
Conrad L. Schoch},
title = {Improving taxonomic accuracy for fungi in public sequence databases:
applying 'one name one species' in well-defined genera with Trichoderma/Hypocrea
as a test case},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax072},
year = {2017},
url = {https://doi.org/10.1093/database/bax072},
doi = {10.1093/DATABASE/BAX072},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/RobbertseSCGCDS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/RobertsGCPHDOCX17,
author = {Kirk Roberts and
Anupama E. Gururaj and
Xiaoling Chen and
Saeid Pournejati and
William R. Hersh and
Dina Demner{-}Fushman and
Lucila Ohno{-}Machado and
Trevor Cohen and
Hua Xu},
title = {Information retrieval for biomedical datasets: the 2016 bioCADDIE
dataset retrieval challenge},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax068},
year = {2017},
url = {https://doi.org/10.1093/database/bax068},
doi = {10.1093/DATABASE/BAX068},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/RobertsGCPHDOCX17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/RosikiewiczKKCK17,
author = {Wojciech Rosikiewicz and
Michal Kabza and
Jan Kosinski and
Joanna Ciomborowska{-}Basheer and
Magdalena R. Kubiak and
Izabela Makalowska},
title = {RetrogeneDB-a database of plant and animal retrocopies},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax038},
year = {2017},
url = {https://doi.org/10.1093/database/bax038},
doi = {10.1093/DATABASE/BAX038},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/RosikiewiczKKCK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/RuasGSSHDACJHIJ17,
author = {Max Ruas and
Valentin Guignon and
Guilhem Semp{\'{e}}r{\'{e}} and
Julie Sardos and
Yann Hueber and
H. Duvergey and
Alain Andrieu and
Richard Chase and
Christophe Jenny and
Tom Hazekamp and
Brian M. Irish and
K. Jelali and
J. Adeka and
Tom{\'{a}}s Ayala{-}Silva and
C. P. Chao and
Jeff W. Daniells and
B. Dowiya and
B. Effa effa and
L. Gueco and
L. Herradura and
L. Ibobondji and
E. Kempenaers and
J. Kilangi and
S. Muhangi and
P. Ngo Xuan and
J. Paofa and
Claudie Pavis and
Deless Thi{\'{e}}m{\'{e}}l{\'{e}} and
Colette Tossou and
Jeffrey Sandoval and
Asti Sutanto and
G. Vangu Paka and
Guilian Yi and
Ines van den houwe and
Nicolas Roux and
Mathieu Rouard},
title = {{MGIS:} managing banana (Musa spp.) genetic resources information
and high-throughput genotyping data},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax046},
year = {2017},
url = {https://doi.org/10.1093/database/bax046},
doi = {10.1093/DATABASE/BAX046},
timestamp = {Thu, 05 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/RuasGSSHDACJHIJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/RuffierKKKL17,
author = {Magali Ruffier and
Andreas K{\"{a}}h{\"{a}}ri and
Monika Komorowska and
Stephen Keenan and
Matthew R. Laird and
Ian Longden and
Glenn Proctor and
Steve Searle and
Daniel M. Staines and
Kieron R. Taylor and
Alessandro Vullo and
Andrew D. Yates and
Daniel R. Zerbino and
Paul Flicek},
title = {Ensembl core software resources: storage and programmatic access for
{DNA} sequence and genome annotation},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax020},
year = {2017},
url = {https://doi.org/10.1093/database/bax020},
doi = {10.1093/DATABASE/BAX020},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/RuffierKKKL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/SahaHVMSFRCBMDD17,
author = {Surya Saha and
Prashant S. Hosmani and
Krystal Villalobos{-}Ayala and
Sherry Miller and
Teresa Shippy and
Mirella Flores and
Andrew Rosendale and
Chris Cordola and
Tracey Bell and
Hannah Mann and
Gabe DeAvila and
Daniel DeAvila and
Zachary Moore and
Kyle Buller and
Kathryn Ciolkevich and
Samantha Nandyal and
Robert Mahoney and
Joshua Van Voorhis and
Megan Dunlevy and
David C. Farrow and
David Hunter and
Taylar Morgan and
Kayla Shore and
Victoria Guzman and
Allison Izsak and
Danielle E. Dixon and
Andrew Cridge and
Liliana Cano and
Xiaolong Cao and
Haobo Jiang and
Nan Leng and
Shannon Johnson and
Brandi L. Cantarel and
Stephen Richards and
Adam C. English and
Robert G. Shatters and
Christopher P. Childers and
Mei{-}Ju Chen and
Wayne B. Hunter and
Michelle Cilia and
Lukas A. Mueller and
Monica C. Munoz{-}Torres and
David Nelson and
Monica Poelchau and
Joshua B. Benoit and
Helen Wiersma{-}Koch and
Tom D'Elia and
Susan J. Brown},
title = {Improved annotation of the insect vector of citrus greening disease:
biocuration by a diverse genomics community},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax032},
year = {2017},
url = {https://doi.org/10.1093/database/bax032},
doi = {10.1093/DATABASE/BAX032},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/SahaHVMSFRCBMDD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ScerriKDSCMNW17,
author = {Antony Scerri and
John Kuriakose and
Amit Ajit Deshmane and
Mark Stanger and
Peter Cotroneo and
Rebekah Moore and
Raj Naik and
Anita de Waard},
title = {Elsevier's approach to the bioCADDIE 2016 Dataset Retrieval Challenge},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax056},
year = {2017},
url = {https://doi.org/10.1093/database/bax056},
doi = {10.1093/DATABASE/BAX056},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/ScerriKDSCMNW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/SenBSPSHGCA17,
author = {Taner Z. Sen and
Bremen L. Braun and
David A. Schott and
John L. Portwood II and
Mary L. Schaeffer and
Lisa C. Harper and
Jack M. Gardiner and
Ethalinda K. S. Cannon and
Carson M. Andorf},
title = {Surveying the Maize community for their diversity and pedigree visualization
needs to prioritize tool development and curation},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax031},
year = {2017},
url = {https://doi.org/10.1093/database/bax031},
doi = {10.1093/DATABASE/BAX031},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/SenBSPSHGCA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/SernadelaO17,
author = {Pedro Sernadela and
Jos{\'{e}} Lu{\'{\i}}s Oliveira},
title = {A semantic-based workflow for biomedical literature annotation},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax088},
year = {2017},
url = {https://doi.org/10.1093/database/bax088},
doi = {10.1093/DATABASE/BAX088},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/SernadelaO17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/SharmaDGV17,
author = {Ankit Sharma and
Vrushali Deshpande and
Madankumar Ghatge and
Rajani Kanth Vangala},
title = {In-Cardiome: integrated knowledgebase for coronary artery disease
enabling translational research},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax077},
year = {2017},
url = {https://doi.org/10.1093/database/bax077},
doi = {10.1093/DATABASE/BAX077},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/SharmaDGV17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ShengJYLLYC17,
author = {Lei Sheng and
Haiyang Jiang and
Hanwei Yan and
Xiaoyu Li and
Yongxiang Lin and
Hui Ye and
Beijiu Cheng},
title = {{MGFD:} the maize gene families database},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax050},
year = {2017},
url = {https://doi.org/10.1093/database/bax050},
doi = {10.1093/DATABASE/BAX050},
timestamp = {Wed, 02 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/ShengJYLLYC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/Suarez-Paniagua17,
author = {V{\'{\i}}ctor Su{\'{a}}rez{-}Paniagua and
Isabel Segura{-}Bedmar and
Paloma Mart{\'{\i}}nez},
title = {Exploring convolutional neural networks for drug-drug interaction
extraction},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax019},
year = {2017},
url = {https://doi.org/10.1093/database/bax019},
doi = {10.1093/DATABASE/BAX019},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/Suarez-Paniagua17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/SuhrbierKTGB17,
author = {Lutz Suhrbier and
Wolf{-}Henning Kusber and
Okka Tsch{\"{o}}pe and
Anton G{\"{u}}ntsch and
Walter G. Berendsohn},
title = {AnnoSys - implementation of a generic annotation system for schema-based
data using the example of biodiversity collection data},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax018},
year = {2017},
url = {https://doi.org/10.1093/database/bax018},
doi = {10.1093/DATABASE/BAX018},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/SuhrbierKTGB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/SuhrbierKTGB17a,
author = {Lutz Suhrbier and
Wolf{-}Henning Kusber and
Okka Tsch{\"{o}}pe and
Anton G{\"{u}}ntsch and
Walter G. Berendsohn},
title = {AnnoSys - implementation of a generic annotation system for schema-based
data using the example of biodiversity collection data},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax036},
year = {2017},
url = {https://doi.org/10.1093/database/bax036},
doi = {10.1093/DATABASE/BAX036},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/SuhrbierKTGB17a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/SunZMLC17,
author = {Ya{-}Zhou Sun and
De{-}Hong Zhang and
Zhong Ming and
Jian{-}Qiang Li and
Xing Chen},
title = {{DLREFD:} a database providing associations of long non-coding RNAs,
environmental factors and phenotypes},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax084},
year = {2017},
url = {https://doi.org/10.1093/database/bax084},
doi = {10.1093/DATABASE/BAX084},
timestamp = {Thu, 11 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/SunZMLC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/SurendraC17,
author = {Anuradha Surendra and
Miroslava Cuperlovic{-}Culf},
title = {Database of resistance related metabolites in Wheat Fusarium head
blight Disease {(MWFD)}},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax076},
year = {2017},
url = {https://doi.org/10.1093/database/bax076},
doi = {10.1093/DATABASE/BAX076},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/SurendraC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/SzczesniakKKRN17,
author = {Michal Wojciech Szczesniak and
Michal Kabza and
Justyna A. Karolak and
Malgorzata Rydzanicz and
Dorota M. Nowak and
Barbara Ginter{-}Matuszewska and
Piotr Polakowski and
Rafal Ploski and
Jacek P. Szaflik and
Marzena Gajecka},
title = {KTCNlncDB - a first platform to investigate lncRNAs expressed in human
keratoconus and non-keratoconus corneas},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {baw168},
year = {2017},
url = {https://doi.org/10.1093/database/baw168},
doi = {10.1093/DATABASE/BAW168},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/SzczesniakKKRN17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/TahsinWJMVGS17,
author = {Tasnia Tahsin and
Davy Weissenbacher and
Demetrius Jones{-}Shargani and
Daniel Magee and
Matteo Vaiente and
Graciela Gonzalez and
Matthew Scotch},
title = {Named entity linking of geospatial and host metadata in GenBank for
advancing biomedical research},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax093},
year = {2017},
url = {https://doi.org/10.1093/database/bax093},
doi = {10.1093/DATABASE/BAX093},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/TahsinWJMVGS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/TeodoroMGGVR17,
author = {Douglas Teodoro and
Luc Mottin and
Julien Gobeill and
Arnaud Gaudinat and
Th{\'{e}}r{\`{e}}se Vachon and
Patrick Ruch},
title = {Improving average ranking precision in user searches for biomedical
research datasets},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax083},
year = {2017},
url = {https://doi.org/10.1093/database/bax083},
doi = {10.1093/DATABASE/BAX083},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/TeodoroMGGVR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/TopazMCKJ17,
author = {Nadav Topaz and
Nazia Mojib and
Aroon T. Chande and
Julia Kubanek and
I King Jordan},
title = {RampDB: a web application and database for the exploration and prediction
of receptor activity modifying protein interactions},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax067},
year = {2017},
url = {https://doi.org/10.1093/database/bax067},
doi = {10.1093/DATABASE/BAX067},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/TopazMCKJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/TordaiJGAB17,
author = {Hedvig Tordai and
Krist{\'{o}}f Jakab and
Gergely Gyimesi and
Kinga Andr{\'{a}}s and
Anna Br{\'{o}}zik and
Bal{\'{a}}zs Sarkadi and
Tam{\'{a}}s Heged{\"{u}}s},
title = {ABCMdb reloaded: updates on mutations in {ATP} binding cassette proteins},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax023},
year = {2017},
url = {https://doi.org/10.1093/database/bax023},
doi = {10.1093/DATABASE/BAX023},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/TordaiJGAB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/TorresACBMQ17,
author = {Felipe Torres and
Ra{\'{u}}l Arias{-}Carrasco and
Jos{\'{e}} C. Caris{-}Maldonado and
Aldina Barral and
Vinicius Maracaja{-}Coutinho and
Artur T. L. De Queiroz},
title = {LeishDB: a database of coding gene annotation and non-coding RNAs
in Leishmania braziliensis},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax047},
year = {2017},
url = {https://doi.org/10.1093/database/bax047},
doi = {10.1093/DATABASE/BAX047},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/TorresACBMQ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/VitaOSP17,
author = {Randi Vita and
James A. Overton and
Alessandro Sette and
Bjoern Peters},
title = {Better living through ontologies at the Immune Epitope Database},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax014},
year = {2017},
url = {https://doi.org/10.1093/database/bax014},
doi = {10.1093/DATABASE/BAX014},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/VitaOSP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/WallacePSF17,
author = {James C. Wallace and
Jesse A. Port and
Marissa N. Smith and
Elaine M. Faustman},
title = {{FARME} {DB:} a functional antibiotic resistance element database},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {baw165},
year = {2017},
url = {https://doi.org/10.1093/database/baw165},
doi = {10.1093/DATABASE/BAW165},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/WallacePSF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/WangREL17,
author = {Yanshan Wang and
Majid Rastegar{-}Mojarad and
Ravikumar Komandur Elayavilli and
Hongfang Liu},
title = {Leveraging word embeddings and medical entity extraction for biomedical
dataset retrieval using unstructured texts},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax091},
year = {2017},
url = {https://doi.org/10.1093/database/bax091},
doi = {10.1093/DATABASE/BAX091},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/WangREL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/WiewiorkaWOG17,
author = {Marek S. Wiewi{\'{o}}rka and
Dawid P. Wysakowicz and
Michal J. Okoniewski and
Tomasz Gambin},
title = {Benchmarking distributed data warehouse solutions for storing genomic
variant information},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax049},
year = {2017},
url = {https://doi.org/10.1093/database/bax049},
doi = {10.1093/DATABASE/BAX049},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/WiewiorkaWOG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/WrightBH17,
author = {Theodore B. Wright and
David Ball and
William R. Hersh},
title = {Query expansion using MeSH terms for dataset retrieval: {OHSU} at
the bioCADDIE 2016 dataset retrieval challenge},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax065},
year = {2017},
url = {https://doi.org/10.1093/database/bax065},
doi = {10.1093/DATABASE/BAX065},
timestamp = {Fri, 17 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/WrightBH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/WuCCT17,
author = {Wei{-}Sheng Wu and
Pin{-}Han Chen and
Tsung{-}Te Chen and
Yan Yuan Tseng},
title = {{YGMD:} a repository for yeast cooperative transcription factor sets
and their target gene modules},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax085},
year = {2017},
url = {https://doi.org/10.1093/database/bax085},
doi = {10.1093/DATABASE/BAX085},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/WuCCT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/WuOGBHD17,
author = {Honghan Wu and
Anika Oellrich and
Christine Girges and
Bernard de Bono and
Tim J. P. Hubbard and
Richard J. B. Dobson},
title = {Automated {PDF} highlighting to support faster curation of literature
for Parkinson's and Alzheimer's disease},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax027},
year = {2017},
url = {https://doi.org/10.1093/database/bax027},
doi = {10.1093/DATABASE/BAX027},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/WuOGBHD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/WytkoSF17,
author = {Connor Wytko and
Brian Soto and
Stephen P. Ficklin},
title = {blend4php: a {PHP} {API} for galaxy},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {baw154},
year = {2017},
url = {https://doi.org/10.1093/database/baw154},
doi = {10.1093/DATABASE/BAW154},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/WytkoSF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/X17,
title = {{RAIN:} RNA-protein Association and Interaction Networks},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax007},
year = {2017},
url = {https://doi.org/10.1093/database/bax007},
doi = {10.1093/DATABASE/BAX007},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/X17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/XuLNPGYHZXGSD17,
author = {Zhenzhen Xu and
Jing Liu and
Wanchao Ni and
Zhen Peng and
Yue Guo and
Wuwei Ye and
Fang Huang and
Xianggui Zhang and
Peng Xu and
Qi Guo and
Xinlian Shen and
Jianchang Du},
title = {GrTEdb: the first web-based database of transposable elements in cotton
(Gossypium raimondii)},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax013},
year = {2017},
url = {https://doi.org/10.1093/database/bax013},
doi = {10.1093/DATABASE/BAX013},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/XuLNPGYHZXGSD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/XuYWDSSLXSLZL17,
author = {Yanjun Xu and
Haixiu Yang and
Tan Wu and
Qun Dong and
Zeguo Sun and
Desi Shang and
Feng Li and
Yingqi Xu and
Fei Su and
Siyao Liu and
Yunpeng Zhang and
Xia Li},
title = {BioM2MetDisease: a manually curated database for associations between
microRNAs, metabolites, small molecules and metabolic diseases},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax037},
year = {2017},
url = {https://doi.org/10.1093/database/bax037},
doi = {10.1093/DATABASE/BAX037},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/XuYWDSSLXSLZL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/Yabuzaki17,
author = {Junko Yabuzaki},
title = {Carotenoids Database: structures, chemical fingerprints and distribution
among organisms},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax004},
year = {2017},
url = {https://doi.org/10.1093/database/bax004},
doi = {10.1093/DATABASE/BAX004},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/Yabuzaki17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/YueZBMC17,
author = {Junyang Yue and
Danfeng Zhang and
Rongjun Ban and
Xiaojing Ma and
Danyang Chen and
Guangwei Li and
Jia Liu and
Michael Wisniewski and
Samir Droby and
Yongsheng Liu},
title = {{PCPPI:} a comprehensive database for the prediction of Penicillium-crop
protein-protein interactions},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {baw170},
year = {2017},
url = {https://doi.org/10.1093/database/baw170},
doi = {10.1093/DATABASE/BAW170},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/YueZBMC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ZanziM17,
author = {Antonella Zanzi and
Jann Th. Martinsohn},
title = {FishTrace: a genetic catalogue of European fishes},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax075},
year = {2017},
url = {https://doi.org/10.1093/database/bax075},
doi = {10.1093/DATABASE/BAX075},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/ZanziM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ZhangMCLXZC17,
author = {Peijing Zhang and
Xianwen Meng and
Hongjun Chen and
Yongjing Liu and
Jitong Xue and
Yincong Zhou and
Ming Chen},
title = {PlantCircNet: a database for plant circRNA-miRNA-mRNA regulatory networks},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax089},
year = {2017},
url = {https://doi.org/10.1093/database/bax089},
doi = {10.1093/DATABASE/BAX089},
timestamp = {Fri, 06 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/ZhangMCLXZC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ZhouLOLIWAZXZ17,
author = {Zhongyin Zhou and
Aimin Li and
Newton Otieno Otecko and
Yan{-}Hu Liu and
David M. Irwin and
Lu Wang and
Adeniyi C. Adeola and
Junying Zhang and
Hai{-}Bing Xie and
Ya{-}Ping Zhang},
title = {PigVar: a database of pig variations and positive selection signatures},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax048},
year = {2017},
url = {https://doi.org/10.1093/database/bax048},
doi = {10.1093/DATABASE/BAX048},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/ZhouLOLIWAZXZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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