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@inproceedings{DBLP:conf/cmsb/BallariniBC23, author = {Paolo Ballarini and Mahmoud Bentriou and Paul{-}Henry Courn{\`{e}}de}, editor = {Jun Pang and Joachim Niehren}, title = {A Formal Approach for Tuning Stochastic Oscillators}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {1--17}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_1}, doi = {10.1007/978-3-031-42697-1\_1}, timestamp = {Fri, 15 Sep 2023 15:00:48 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BallariniBC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/BenesBPSS23, author = {Nikola Benes and Lubos Brim and Samuel Pastva and David Safr{\'{a}}nek and Eva Smij{\'{a}}kov{\'{a}}}, editor = {Jun Pang and Joachim Niehren}, title = {Phenotype Control of Partially Specified Boolean Networks}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {18--35}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_2}, doi = {10.1007/978-3-031-42697-1\_2}, timestamp = {Sat, 14 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/BenesBPSS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ContentoSWH23, author = {Lorenzo Contento and Paul Stapor and Daniel Weindl and Jan Hasenauer}, editor = {Jun Pang and Joachim Niehren}, title = {A More Expressive Spline Representation for {SBML} Models Improves Code Generation Performance in {AMICI}}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {36--43}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_3}, doi = {10.1007/978-3-031-42697-1\_3}, timestamp = {Sun, 24 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ContentoSWH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/GundogduPANDL23, author = {Pelin Gundogdu and Miriam Pay{\'{a}}{-}Milans and Inmaculada Alamo{-}Alvarez and Isabel A. Nepomuceno{-}Chamorro and Joaqu{\'{\i}}n Dopazo and Carlos Loucera}, editor = {Jun Pang and Joachim Niehren}, title = {Cell-Level Pathway Scoring Comparison with a Biologically Constrained Variational Autoencoder}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {62--77}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_5}, doi = {10.1007/978-3-031-42697-1\_5}, timestamp = {Sun, 24 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/GundogduPANDL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/HemeryF23, author = {Mathieu Hemery and Fran{\c{c}}ois Fages}, editor = {Jun Pang and Joachim Niehren}, title = {On Estimating Derivatives of Input Signals in Biochemistry}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {78--96}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_6}, doi = {10.1007/978-3-031-42697-1\_6}, timestamp = {Fri, 15 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/HemeryF23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Herbach23, author = {Ulysse Herbach}, editor = {Jun Pang and Joachim Niehren}, title = {Harissa: Stochastic Simulation and Inference of Gene Regulatory Networks Based on Transcriptional Bursting}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {97--105}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_7}, doi = {10.1007/978-3-031-42697-1\_7}, timestamp = {Sun, 24 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Herbach23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/LeguizamonRobayoJTTV23, author = {Alexander Leguizamon{-}Robayo and Antonio Jim{\'{e}}nez{-}Pastor and Mirco Tribastone and Max Tschaikowski and Andrea Vandin}, editor = {Jun Pang and Joachim Niehren}, title = {Approximate Constrained Lumping of Polynomial Differential Equations}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {106--123}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_8}, doi = {10.1007/978-3-031-42697-1\_8}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/LeguizamonRobayoJTTV23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/NicolaSIV23, author = {Rocco De Nicola and Luca Di Stefano and Omar Inverso and Serenella Valiani}, editor = {Jun Pang and Joachim Niehren}, title = {Intuitive Modelling and Formal Analysis of Collective Behaviour in Foraging Ants}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {44--61}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_4}, doi = {10.1007/978-3-031-42697-1\_4}, timestamp = {Fri, 15 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/NicolaSIV23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/NiehrenLV23, author = {Joachim Niehren and C{\'{e}}dric Lhoussaine and Ath{\'{e}}na{\"{\i}}s Vaginay}, editor = {Jun Pang and Joachim Niehren}, title = {Core {SBML} and Its Formal Semantics}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {124--143}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_9}, doi = {10.1007/978-3-031-42697-1\_9}, timestamp = {Fri, 15 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/NiehrenLV23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/RemyR23, author = {Elisabeth Remy and Paul Ruet}, editor = {Jun Pang and Joachim Niehren}, title = {Average Sensitivity of Nested Canalizing Multivalued Functions}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {144--156}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_10}, doi = {10.1007/978-3-031-42697-1\_10}, timestamp = {Fri, 15 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/RemyR23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/RivaLLP23, author = {Sara Riva and Jean{-}Marie Lagniez and Gustavo Maga{\~{n}}a L{\'{o}}pez and Lo{\"{\i}}c Paulev{\'{e}}}, editor = {Jun Pang and Joachim Niehren}, title = {Tackling Universal Properties of Minimal Trap Spaces of Boolean Networks}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {157--174}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_11}, doi = {10.1007/978-3-031-42697-1\_11}, timestamp = {Fri, 15 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/RivaLLP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SohMBBT23, author = {Takehide Soh and Morgan Magnin and Daniel Le Berre and Mutsunori Banbara and Naoyuki Tamura}, editor = {Jun Pang and Joachim Niehren}, title = {{SAF:} SAT-Based Attractor Finder in Asynchronous Automata Networks}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {175--183}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_12}, doi = {10.1007/978-3-031-42697-1\_12}, timestamp = {Sun, 24 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/SohMBBT23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/SunFM23, author = {Honglu Sun and Maxime Folschette and Morgan Magnin}, editor = {Jun Pang and Joachim Niehren}, title = {Condition for Periodic Attractor in 4-Dimensional Repressilators}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {184--201}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_13}, doi = {10.1007/978-3-031-42697-1\_13}, timestamp = {Sun, 24 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/SunFM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/TonelloP23, author = {Elisa Tonello and Lo{\"{\i}}c Paulev{\'{e}}}, editor = {Jun Pang and Joachim Niehren}, title = {Attractor Identification in Asynchronous Boolean Dynamics with Network Reduction}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {202--219}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_14}, doi = {10.1007/978-3-031-42697-1\_14}, timestamp = {Sat, 14 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/TonelloP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/Treml23, author = {Lilly Maria Treml}, editor = {Jun Pang and Joachim Niehren}, title = {3D Hybrid Cellular Automata for Cardiac Electrophysiology: {A} Concept Study}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {220--235}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_15}, doi = {10.1007/978-3-031-42697-1\_15}, timestamp = {Sun, 24 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/Treml23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/WathieuSCT23, author = {Lancelot Wathieu and Gus Henry Smith and Luis Ceze and Chris Thachuk}, editor = {Jun Pang and Joachim Niehren}, title = {Fridge Compiler: Optimal Circuits from Molecular Inventories}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {236--252}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_16}, doi = {10.1007/978-3-031-42697-1\_16}, timestamp = {Fri, 15 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/WathieuSCT23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ZabaikinaBS23, author = {Iryna Zabaikina and Pavol Bokes and Abhyudai Singh}, editor = {Jun Pang and Joachim Niehren}, title = {Joint Distribution of Protein Concentration and Cell Volume Coupled by Feedback in Dilution}, booktitle = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, pages = {253--268}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1\_17}, doi = {10.1007/978-3-031-42697-1\_17}, timestamp = {Sun, 24 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ZabaikinaBS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cmsb/2023, editor = {Jun Pang and Joachim Niehren}, title = {Computational Methods in Systems Biology - 21st International Conference, {CMSB} 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14137}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42697-1}, doi = {10.1007/978-3-031-42697-1}, isbn = {978-3-031-42696-4}, timestamp = {Fri, 15 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/2023.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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