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@inproceedings{DBLP:conf/bionlp/AramakiMTOMO09, author = {Eiji Aramaki and Yasuhide Miura and Masatsugu Tonoike and Tomoko Ohkuma and Hiroshi Mashuichi and Kazuhiko Ohe}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {{TEXT2TABLE:} Medical Text Summarization System Based on Named Entity Recognition and Modality Identification}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {185--192}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1324/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/AramakiMTOMO09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/BashyamT09, author = {Vijayaraghavan Bashyam and Ricky K. Taira}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {Incorporating Syntactic Dependency Information towards Improved Coding of Lengthy Medical Concepts in Clinical Reports}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {125--132}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1316/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/BashyamT09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/CaoEAY09, author = {Yonggang Cao and John W. Ely and Lamont D. Antieau and Hong Yu}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {Evaluation of the Clinical Question Answering Presentation}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {171--178}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1322/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/CaoEAY09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/ChristensenHHIC09, author = {Lee M. Christensen and Henk Harkema and Peter J. Haug and Jeannie Yuhaniak Irwin and Wendy W. Chapman}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {{ONYX:} {A} System for the Semantic Analysis of Clinical Text}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {19--27}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1303/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/ChristensenHHIC09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/ConwayDC09, author = {Mike Conway and Son Doan and Nigel Collier}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {Using Hedges to Enhance a Disease Outbreak Report Text Mining System}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {142--143}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1318/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/ConwayDC09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/ErdemY09, author = {Esra Erdem and Reyyan Yeniterzi}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {Transforming Controlled Natural Language Biomedical Queries into Answer Set Programs}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {117--124}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1315/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/ErdemY09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/HahnTBKR09, author = {Udo Hahn and Katrin Tomanek and Ekaterina Buyko and Jung{-}Jae Kim and Dietrich Rebholz{-}Schuhmann}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {How Feasible and Robust is the Automatic Extraction of Gene Regulation Events? {A} Cross-Method Evaluation under Lab and Real-Life Conditions}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {37--45}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1305/}, timestamp = {Fri, 01 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bionlp/HahnTBKR09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/HamonG09, author = {Thierry Hamon and Natalia Grabar}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {Exploring Graph Structure for Detection of Reliability Zones within Synonym Resources: Experiment with the Gene Ontology}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {89--96}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1311/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/HamonG09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/JinHLZ09, author = {Feng Jin and Minlie Huang and Zhiyong Lu and Xiaoyan Zhu}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {Towards Automatic Generation of Gene Summary}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {97--105}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1312/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/JinHLZ09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/KappelerKR09, author = {Thomas Kappeler and Kaarel Kaljurand and Fabio Rinaldi}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {{TX} Task: Automatic Detection of Focus Organisms in Biomedical Publications}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {80--88}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1310/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/KappelerKR09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/Leonhard09, author = {Annette Leonhard}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {Towards Retrieving Relevant Information for Answering Clinical Comparison Questions}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {153--161}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1320/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/Leonhard09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/LiakataQS09, author = {Maria Liakata and Claire Q and Larisa N. Soldatova}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {Semantic Annotation of Papers: Interface {\&} Enrichment Tool {(SAPIENT)}}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {193--200}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1325/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/LiakataQS09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/LiuBK09, author = {Haibin Liu and Christian Blouin and Vlado Keselj}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {Identifying Interaction Sentences from Biological Literature Using Automatically Extracted Patterns}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {133--141}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1317/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/LiuBK09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/MatykiewiczDP09, author = {Pawel Matykiewicz and Wlodzislaw Duch and John Pestian}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {Clustering Semantic Spaces of Suicide Notes and Newsgroups Articles}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {179--184}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1323/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/MatykiewiczDP09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/MoranteD09, author = {Roser Morante and Walter Daelemans}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {Learning the Scope of Hedge Cues in Biomedical Texts}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {28--36}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1304/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/MoranteD09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/MoweryHDLC09, author = {Danielle L. Mowery and Henk Harkema and John N. Dowling and Jonathan L. Lustgarten and Wendy W. Chapman}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {Distinguishing Historical from Current Problems in Clinical Reports - Which Textual Features Help?}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {10--18}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1302/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/MoweryHDLC09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/NeveolKWL09, author = {Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and Won Kim and W. John Wilbur and Zhiyong Lu}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {Exploring Two Biomedical Text Genres for Disease Recognition}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {144--152}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1319/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/NeveolKWL09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/OhtaKPWT09, author = {Tomoko Ohta and Jin{-}Dong Kim and Sampo Pyysalo and Yue Wang and Jun'ichi Tsujii}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {Incorporating GENETAG-style annotation to {GENIA} corpus}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {106--107}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1313/}, timestamp = {Tue, 02 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/OhtaKPWT09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/PyysaloOKT09, author = {Sampo Pyysalo and Tomoko Ohta and Jin{-}Dong Kim and Jun'ichi Tsujii}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {Static Relations: a Piece in the Biomedical Information Extraction Puzzle}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {1--9}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1301/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/PyysaloOKT09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/StevensonGAG09, author = {Mark Stevenson and Yikun Guo and Abdulaziz Alamri and Robert J. Gaizauskas}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {Disambiguation of Biomedical Abbreviations}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {71--79}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1309/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/StevensonGAG09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/SunKSS09, author = {Lin Sun and Anna Korhonen and Ilona Silins and Ulla Stenius}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {User-Driven Development of Text Mining Resources for Cancer Risk Assessment}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {108--116}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1314/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/SunKSS09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/TanL09, author = {He Tan and Patrick Lambrix}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {Selecting an Ontology for Biomedical Text Mining}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {55--62}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1307/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/TanL09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/UematsuKT09, author = {Sumire Uematsu and Jin{-}Dong Kim and Jun'ichi Tsujii}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {Bridging the Gap between Domain-Oriented and Linguistically-Oriented Semantics}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {162--170}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1321/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/UematsuKT09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/WongMC09, author = {Wern Wong and David Mart{\'{\i}}nez and Lawrence Cavedon}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {Extraction of Named Entities from Tables in Gene Mutation Literature}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {46--54}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1306/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/WongMC09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/XuMDG09, author = {Rong Xu and Alexander A. Morgan and Amar K. Das and Alan M. Garber}, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {Investigation of Unsupervised Pattern Learning Techniques for Bootstrap Construction of a Medical Treatment Lexicon}, booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, pages = {63--70}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1308/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/XuMDG09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/bionlp/2009, editor = {Kevin Bretonnel Cohen and Dina Demner{-}Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/volumes/W09-13/}, isbn = {978-1-932432-30-5}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/2009.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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