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@inproceedings{DBLP:conf/bird/Al-ShalalfaA08,
  author    = {Mohammed Al{-}Shalalfa and
               Reda Alhajj},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Motif Location Prediction by Divide and Conquer},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {102--113},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_8},
  doi       = {10.1007/978-3-540-70600-7\_8},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/Al-ShalalfaA08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/AlthausC08,
  author    = {Ernst Althaus and
               Stefan Canzar},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {{LASA:} {A} Tool for Non-heuristic Alignment of Multiple Sequences},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {489--498},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_38},
  doi       = {10.1007/978-3-540-70600-7\_38},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/AlthausC08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/AntoGNG08,
  author    = {M. A. Lijo Anto and
               G. Gopakumar and
               Achuthsankar S. Nair and
               Indira Ghosh},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {{GENFOCS} - {A} Comparative Tool on Gene Finding with Sensitivity
               and Specificity},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {509--516},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_40},
  doi       = {10.1007/978-3-540-70600-7\_40},
  timestamp = {Tue, 29 Oct 2019 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/conf/bird/AntoGNG08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/AntoniouIJR08,
  author    = {Pavlos Antoniou and
               Costas S. Iliopoulos and
               Inuka Jayasekera and
               M. Sohel Rahman},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Implementation of a Swap Matching Algorithm Using a Graph Theoretic
               Model},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {446--455},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_34},
  doi       = {10.1007/978-3-540-70600-7\_34},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/AntoniouIJR08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/BhattacharyyaB08,
  author    = {Ramkishore Bhattacharyya and
               Balaram Bhattacharyya},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Gene Expression Mining for Cohesive Pattern Discovery},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {221--234},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_17},
  doi       = {10.1007/978-3-540-70600-7\_17},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/BhattacharyyaB08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/BoevaT08,
  author    = {Veselka Boeva and
               Elena Tsiporkova},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {A Novel Adaptive Multiple Imputation Algorithm},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {193--206},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_15},
  doi       = {10.1007/978-3-540-70600-7\_15},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/BoevaT08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/Cattani08,
  author    = {Carlo Cattani},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Complex Representation of {DNA} Sequences},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {528--537},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_42},
  doi       = {10.1007/978-3-540-70600-7\_42},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/Cattani08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/CattaniS08,
  author    = {Carlo Cattani and
               Massimo Scalia},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Wavelet Analysis of Impulses in Axon Physiology},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {538--545},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_43},
  doi       = {10.1007/978-3-540-70600-7\_43},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/CattaniS08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/CoditaP08,
  author    = {Irina Codita and
               Stefan Pusca},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {{PTF} Model for Evaluating the Relationships between the {VAC} and
               Antimicrobial Resistance in Human Communities},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {587--593},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_49},
  doi       = {10.1007/978-3-540-70600-7\_49},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/CoditaP08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/CoelhoM08,
  author    = {Lu{\'{\i}}s Pedro Coelho and
               Robert F. Murphy},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Identifying Subcellular Locations from Images of Unknown Resolution},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {235--242},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_18},
  doi       = {10.1007/978-3-540-70600-7\_18},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/CoelhoM08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/DalzielYSGF08,
  author    = {Ben Dalziel and
               Hui Yang and
               Rahul Singh and
               Matthew Gormley and
               Susan Fisher},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {{XMAS:} An Experiential Approach for Visualization, Analysis, and
               Exploration of Time Series Microarray Data},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {16--31},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_2},
  doi       = {10.1007/978-3-540-70600-7\_2},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/DalzielYSGF08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/DobsonMMCS08,
  author    = {Richard J. B. Dobson and
               Patricia B. Munroe and
               Charles A. Mein and
               Mark J. Caulfield and
               Mansoor A. S. Saqi},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Combining Protein-Protein Interaction {(PPI)} Network and Sequence
               Attributes for Predicting Hypertension Related Proteins},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {377--391},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_28},
  doi       = {10.1007/978-3-540-70600-7\_28},
  timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/DobsonMMCS08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/ElloumiM08,
  author    = {Mourad Elloumi and
               Ahmed Mokaddem},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {An Algorithm for Multiple and Global Alignments},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {479--488},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_37},
  doi       = {10.1007/978-3-540-70600-7\_37},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/ElloumiM08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/FedericoP08,
  author    = {Maria Federico and
               Nadia Pisanti},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Suffix Tree Characterization of Maximal Motifs in Biological Sequences},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {456--465},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_35},
  doi       = {10.1007/978-3-540-70600-7\_35},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/FedericoP08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/FiondaPPR08,
  author    = {Valeria Fionda and
               Luigi Palopoli and
               Simona Panni and
               Simona E. Rombo},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Protein-Protein Interaction Network Querying by a "Focus and Zoom"
               Approach},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {331--346},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_25},
  doi       = {10.1007/978-3-540-70600-7\_25},
  timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/conf/bird/FiondaPPR08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/FlouriIRVV08,
  author    = {Tom{\'{a}}s Flouri and
               Costas S. Iliopoulos and
               Mohammad Sohel Rahman and
               Ladislav Vagner and
               Michal Vor{\'{a}}cek},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Indexing Factors in {DNA/RNA} Sequences},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {436--445},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_33},
  doi       = {10.1007/978-3-540-70600-7\_33},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/FlouriIRVV08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/GanKAS08,
  author    = {Xiangchao Gan and
               Leonidas Kapsokalivas and
               Andreas Alexander Albrecht and
               Kathleen Steinh{\"{o}}fel},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {A Symmetry-Free Subspace for Ab initioProtein Folding Simulations},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {128--139},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_10},
  doi       = {10.1007/978-3-540-70600-7\_10},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/GanKAS08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/HalachevS08,
  author    = {Mihail Halachev and
               Nematollaah Shiri},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Fast Structured Motif Search in {DNA} Sequences},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {58--73},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_5},
  doi       = {10.1007/978-3-540-70600-7\_5},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/HalachevS08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/HemertB08,
  author    = {Jano I. van Hemert and
               Richard A. Baldock},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Matching Spatial Regions with Combinations of Interacting Gene Expression
               Patterns},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {347--361},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_26},
  doi       = {10.1007/978-3-540-70600-7\_26},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/HemertB08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/HernandezDH08,
  author    = {Jos{\'{e}} Crisp{\'{\i}}n Hern{\'{a}}ndez Hern{\'{a}}ndez and
               B{\'{e}}atrice Duval and
               Jin{-}Kao Hao},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {SVM-Based Local Search for Gene Selection and Classification of Microarray
               Data},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {499--508},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_39},
  doi       = {10.1007/978-3-540-70600-7\_39},
  timestamp = {Thu, 11 Feb 2021 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/conf/bird/HernandezDH08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/KalsiPT08,
  author    = {Petri Kalsi and
               Hannu Peltola and
               Jorma Tarhio},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Comparison of Exact String Matching Algorithms for Biological Sequences},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {417--426},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_31},
  doi       = {10.1007/978-3-540-70600-7\_31},
  timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/conf/bird/KalsiPT08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/KambolA08,
  author    = {Roziah Kambol and
               M. Faris Abtholuddin},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Genome Structure and Characterisation of an Endogenous Retrovirus
               from the Zebrafish Genome Project Database},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {392--403},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_29},
  doi       = {10.1007/978-3-540-70600-7\_29},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/KambolA08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/KapsokalivasGAS08,
  author    = {Leonidas Kapsokalivas and
               Xiangchao Gan and
               Andreas Alexander Albrecht and
               Kathleen Steinh{\"{o}}fel},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Two Local Search Methods for Protein Folding Simulation in the {HP}
               and the {MJ} Lattice Models},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {167--179},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_13},
  doi       = {10.1007/978-3-540-70600-7\_13},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/KapsokalivasGAS08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/KhodabakhshiMRG08,
  author    = {Alireza Hadj Khodabakhshi and
               J{\'{a}}n Manuch and
               Arash Rafiey and
               Arvind Gupta},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {A Robust Class of Stable Proteins in the 2D {HPC} Model},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {180--192},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_14},
  doi       = {10.1007/978-3-540-70600-7\_14},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/KhodabakhshiMRG08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/KontosB08,
  author    = {Kevin Kontos and
               Gianluca Bontempi},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Nested q-Partial Graphs for Genetic Network Inference from "Small
               n, Large p" Microarray Data},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {273--287},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_21},
  doi       = {10.1007/978-3-540-70600-7\_21},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/KontosB08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/KurbatovaV08,
  author    = {Natalja Kurbatova and
               Juris Viksna},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Exploration of Evolutionary Relations between Protein Structures},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {154--166},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_12},
  doi       = {10.1007/978-3-540-70600-7\_12},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/KurbatovaV08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/LeeS08,
  author    = {Timothy Lee and
               Rahul Singh},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Comparative Analysis of Disulfide Bond Determination Using Computational-Predictive
               Methods and Mass Spectrometry-Based Algorithmic Approach},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {140--153},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_11},
  doi       = {10.1007/978-3-540-70600-7\_11},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/LeeS08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/LianHS08,
  author    = {Chen Na Lian and
               Mihail Halachev and
               Nematollaah Shiri},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Searching for Supermaximal Repeats in Large {DNA} Sequences},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {87--101},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_7},
  doi       = {10.1007/978-3-540-70600-7\_7},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/LianHS08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/LioBF08,
  author    = {Pietro Li{\`{o}} and
               Matteo Brilli and
               Renato Fani},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Topological Metrics in Blast Data Mining: Plasmid and Nitrogen-Fixing
               Proteins Case Studies},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {207--220},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_16},
  doi       = {10.1007/978-3-540-70600-7\_16},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/LioBF08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/LiuLWDW08,
  author    = {Bin Liu and
               Lei Lin and
               Xiaolong Wang and
               Qiwen Dong and
               Xuan Wang},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {A Discriminative Method for Protein Remote Homology Detection Based
               on N-nary Profiles},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {74--86},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_6},
  doi       = {10.1007/978-3-540-70600-7\_6},
  timestamp = {Tue, 10 Dec 2019 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/conf/bird/LiuLWDW08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/MainzPMWKH08,
  author    = {Dominic Mainz and
               Ingo Paulsen and
               Indra Mainz and
               Katrin Weller and
               Jochen Kohl and
               Arndt von Haeseler},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Knowledge Acquisition Focused Cooperative Development of Bio-ontologies
               - {A} Case Study with BIO2Me},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {258--272},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_20},
  doi       = {10.1007/978-3-540-70600-7\_20},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/MainzPMWKH08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/Marshall08,
  author    = {Roger Marshall},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Gene Machine{\textcopyright} - {A} Hardware/Software Platform for
               Analyzing Genome Data},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {517--527},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_41},
  doi       = {10.1007/978-3-540-70600-7\_41},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/Marshall08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/MartinN08,
  author    = {Christian Martin and
               Tim W. Nattkemper},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {A Tree Index to Support Clustering Based Exploratory Data Analysis},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {1--15},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_1},
  doi       = {10.1007/978-3-540-70600-7\_1},
  timestamp = {Wed, 09 Dec 2020 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/conf/bird/MartinN08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/MocanuS08,
  author    = {Elena Mocanu and
               Paul E. Sterian},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Acquisition and Algorithms for Fluorescence Applications},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {546--555},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_44},
  doi       = {10.1007/978-3-540-70600-7\_44},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/MocanuS08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/MoisaM08,
  author    = {Trandafir Moisa and
               Cristian Morarescu},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {{VEMS-TM} - {A} Management Infrastructure},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {581--586},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_48},
  doi       = {10.1007/978-3-540-70600-7\_48},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/MoisaM08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/MucksteinTBHVSH08,
  author    = {Ulrike M{\"{u}}ckstein and
               Hakim Tafer and
               Stephan H. Bernhart and
               Maribel Hernandez{-}Rosales and
               J{\"{o}}rg Vogel and
               Peter F. Stadler and
               Ivo L. Hofacker},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Translational Control by {RNA-RNA} Interaction: Improved Computation
               of {RNA-RNA} Binding Thermodynamics},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {114--127},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_9},
  doi       = {10.1007/978-3-540-70600-7\_9},
  timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/conf/bird/MucksteinTBHVSH08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/NinulescuNS08,
  author    = {Valerica Ninulescu and
               Vladua{-}Bogdan Nicolae and
               Andreea Sterian},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Quantum Well Lasers for Medical Industry},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {563--570},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_46},
  doi       = {10.1007/978-3-540-70600-7\_46},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/NinulescuNS08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/PhuongT08,
  author    = {Nguyen Phuong and
               Hoang Tuan},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Clustering in a Fixed Manifold to Detect Groups of Genes with Similar
               Expression Patterns},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {32--42},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_3},
  doi       = {10.1007/978-3-540-70600-7\_3},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/PhuongT08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/PitkanenRRU08,
  author    = {Esa Pitk{\"{a}}nen and
               Ari Rantanen and
               Juho Rousu and
               Esko Ukkonen},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {A Computational Method for Reconstructing Gapless Metabolic Networks},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {288--302},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_22},
  doi       = {10.1007/978-3-540-70600-7\_22},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/PitkanenRRU08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/PizzutiR08,
  author    = {Clara Pizzuti and
               Simona E. Rombo},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Multi-functional Protein Clustering in {PPI} Networks},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {318--330},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_24},
  doi       = {10.1007/978-3-540-70600-7\_24},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/PizzutiR08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/PuscaT08,
  author    = {Stefan Pusca and
               Theodora Toma},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Computational Model for the Study of the Fractal Parameters Characteristic
               for the Surface of Titanium Dental Implants},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {571--580},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_47},
  doi       = {10.1007/978-3-540-70600-7\_47},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/PuscaT08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/RoytbergGNLFSK08,
  author    = {Mikhail A. Roytberg and
               Anna Gambin and
               Laurent No{\'{e}} and
               Slawomir Lasota and
               Eugenia Furletova and
               Ewa Szczurek and
               Gregory Kucherov},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Efficient Seeding Techniques for Protein Similarity Search},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {466--478},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_36},
  doi       = {10.1007/978-3-540-70600-7\_36},
  timestamp = {Wed, 06 Nov 2019 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/conf/bird/RoytbergGNLFSK08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/SchwarzLBL08,
  author    = {Emanuel Schwarz and
               F. Markus Leweke and
               Sabine Bahn and
               Pietro Li{\`{o}}},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Combining Molecular and Physiological Data of Complex Disorders},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {362--376},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_27},
  doi       = {10.1007/978-3-540-70600-7\_27},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/SchwarzLBL08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/SterianMN08,
  author    = {Paul E. Sterian and
               Octavian Marin and
               Valerica Ninulescu},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Control of the Lasers Dynamics by Pumping Modulation for Biophotonics
               Applications},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {556--562},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_45},
  doi       = {10.1007/978-3-540-70600-7\_45},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/SterianMN08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/TahriE08,
  author    = {Hatem Tahri and
               Mourad Elloumi},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {A New Approximation Algorithm for the Minimum Fragment Removal Problem},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {427--435},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_32},
  doi       = {10.1007/978-3-540-70600-7\_32},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/TahriE08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/WassinkRVBN08,
  author    = {Ingo H. C. Wassink and
               Han Rauwerda and
               Paul E. van der Vet and
               Timo M. Breit and
               Anton Nijholt},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {E-BioFlow: Different Perspectives on Scientific Workflows},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {243--257},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_19},
  doi       = {10.1007/978-3-540-70600-7\_19},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/WassinkRVBN08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/WathWCNFML08,
  author    = {Richard Carl Van der Wath and
               Elizabeth van der Wath and
               Antonio Carapelli and
               Francesco Nardi and
               Francesco Frati and
               Luciano Milanesi and
               Pietro Li{\`{o}}},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Bayesian Phylogeny on Grid},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {404--416},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_30},
  doi       = {10.1007/978-3-540-70600-7\_30},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/WathWCNFML08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/XiaDX08,
  author    = {Fei Xia and
               Yong Dou and
               Jiaqing Xu},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Families of FPGA-Based Accelerators for {BLAST} Algorithm with Multi-seeds
               Detection and Parallel Extension},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {43--57},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_4},
  doi       = {10.1007/978-3-540-70600-7\_4},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/XiaDX08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/ZantemaWB08,
  author    = {Hans Zantema and
               Stefan Wagemans and
               Dragan Bosnacki},
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Finding Frequent Subgraphs in Biological Networks Via Maximal Item
               Sets},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  pages     = {303--317},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7\_23},
  doi       = {10.1007/978-3-540-70600-7\_23},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/ZantemaWB08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bird/2008,
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  publisher = {Springer},
  year      = {2008},
  isbn      = {978-3-540-70598-7},
  timestamp = {Thu, 11 Sep 2008 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/2008.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/BeigiZ07,
  author    = {Majid Beigi and
               Andreas Zell},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Synthetic Protein Sequence Oversampling Method for Classification
               and Remote Homology Detection in Imbalanced Protein Data},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {263--277},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_21},
  doi       = {10.1007/978-3-540-71233-6\_21},
  timestamp = {Tue, 14 May 2019 10:00:53 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/BeigiZ07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/CamousBS07,
  author    = {Fabrice Camous and
               Stephen Blott and
               Alan F. Smeaton},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Ontology-Based {MEDLINE} Document Classification},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {439--452},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_34},
  doi       = {10.1007/978-3-540-71233-6\_34},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/CamousBS07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/ChenM07,
  author    = {Xiang Chen and
               Robert F. Murphy},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Interpretation of Protein Subcellular Location Patterns in 3D Images
               Across Cell Types and Resolutions},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {328--342},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_26},
  doi       = {10.1007/978-3-540-71233-6\_26},
  timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/ChenM07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/DongLW07,
  author    = {Qiwen Dong and
               Lei Lin and
               Xiaolong Wang},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Protein Remote Homology Detection Based on Binary Profiles},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {212--223},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_17},
  doi       = {10.1007/978-3-540-71233-6\_17},
  timestamp = {Wed, 28 Nov 2018 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/conf/bird/DongLW07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/FariselliMCK07,
  author    = {Piero Fariselli and
               Daniele Molinini and
               Rita Casadio and
               Anders Krogh},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Prediction of Structurally-Determined Coiled-Coil Domains with Hidden
               Markov Models},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {292--302},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_23},
  doi       = {10.1007/978-3-540-71233-6\_23},
  timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/conf/bird/FariselliMCK07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/FritschI07,
  author    = {Arno Fritsch and
               Katja Ickstadt},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Comparing Logic Regression Based Methods for Identifying {SNP} Interactions},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {90--103},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_8},
  doi       = {10.1007/978-3-540-71233-6\_8},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/FritschI07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/GinzingerGH07,
  author    = {Simon W. Ginzinger and
               Thomas Gr{\"{a}}upl and
               Volker Heun},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {SimShiftDB: Chemical-Shift-Based Homology Modeling},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {357--370},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_28},
  doi       = {10.1007/978-3-540-71233-6\_28},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/GinzingerGH07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/GladilinGMDRE07,
  author    = {Evgeny Gladilin and
               Sandra G{\"{o}}tze and
               Jose Mateos{-}Langerak and
               Roel van Driel and
               Karl Rohr and
               Roland Eils},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Stochastical Analysis of Finite Point Sampling of 3D Chromatin Fiber
               in Interphase Cell Nuclei},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {104--118},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_9},
  doi       = {10.1007/978-3-540-71233-6\_9},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/GladilinGMDRE07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/HalachevST07,
  author    = {Mihail Halachev and
               Nematollaah Shiri and
               Anand Thamildurai},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Efficient and Scalable Indexing Techniques for Biological Sequence
               Data},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {464--479},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_36},
  doi       = {10.1007/978-3-540-71233-6\_36},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/HalachevST07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/HemertB07,
  author    = {Jano I. van Hemert and
               Richard A. Baldock},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Mining Spatial Gene Expression Data for Association Rules},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {66--76},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_6},
  doi       = {10.1007/978-3-540-71233-6\_6},
  timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl    = {https://dblp.org/rec/conf/bird/HemertB07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/HinneburgPW07,
  author    = {Alexander Hinneburg and
               Andrea Porzel and
               Karina Wolfram},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {An Evaluation of Text Retrieval Methods for Similarity Search of Multi-dimensional
               NMR-Spectra},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {424--438},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_33},
  doi       = {10.1007/978-3-540-71233-6\_33},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/HinneburgPW07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/JainL07,
  author    = {Brijnesh J. Jain and
               Michael Lappe},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Joining Softassign and Dynamic Programming for the Contact Map Overlap
               Problem},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {410--423},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_32},
  doi       = {10.1007/978-3-540-71233-6\_32},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/JainL07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/JiangZG07,
  author    = {Da Jiang and
               Shuigeng Zhou and
               Jihong Guan},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {A Novel Method for Flux Distribution Computation in Metabolic Networks},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {154--167},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_13},
  doi       = {10.1007/978-3-540-71233-6\_13},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/JiangZG07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/JonesM07,
  author    = {Susan Jones and
               Yoichi Mukarami},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Patch Prediction of Protein Interaction Sites: Validation of a Scoring
               Function for an Online Server},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {303--313},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_24},
  doi       = {10.1007/978-3-540-71233-6\_24},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/JonesM07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/Kaderali07,
  author    = {Lars Kaderali},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Individualized Predictions of Survival Time Distributions from Gene
               Expression Data Using a Bayesian {MCMC} Approach},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {77--89},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_7},
  doi       = {10.1007/978-3-540-71233-6\_7},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/Kaderali07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/KumuthiniJB07,
  author    = {Judit Kumuthini and
               Lionel Jouffe and
               Conrad Bessant},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {A Novel Graph Optimisation Algorithm for the Extraction of Gene Regulatory
               Networks from Temporal Microarray Data},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {28--37},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_3},
  doi       = {10.1007/978-3-540-71233-6\_3},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/KumuthiniJB07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/LeC07,
  author    = {Shu{-}Yun Le and
               Jih{-}Hsiang Chen},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Statistical Inference on Distinct {RNA} Stem-Loops in Genomic Sequences},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {314--327},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_25},
  doi       = {10.1007/978-3-540-71233-6\_25},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/LeC07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/LimaG07,
  author    = {Christelle Melo de Lima and
               Christian Gautier},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {A Markovian Approach for the Segmentation of Chimpanzee Genome},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {251--262},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_20},
  doi       = {10.1007/978-3-540-71233-6\_20},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/LimaG07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/LindlofBCOO07,
  author    = {Angelica Lindl{\"{o}}f and
               Marcus Br{\"{a}}utigam and
               Aakash Chawade and
               Bj{\"{o}}rn Olsson and
               Olof Olsson},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Identification of Cold-Induced Genes in Cereal Crops and \emph{Arabidopsis}
               Through Comparative Analysis of Multiple {EST} Sets},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {48--65},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_5},
  doi       = {10.1007/978-3-540-71233-6\_5},
  timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/LindlofBCOO07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/LuEMS07,
  author    = {James Lu and
               Heinz W. Engl and
               Rainer Machn{\'{e}} and
               Peter Schuster},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Inverse Bifurcation Analysis of a Model for the Mammalian \emph{G}
               \({}_{\mbox{1}}\)/ \emph{S} Regulatory Module},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {168--184},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_14},
  doi       = {10.1007/978-3-540-71233-6\_14},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/LuEMS07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/LubovacCGO07,
  author    = {Zelmina Lubovac and
               David Corne and
               Jonas Gamalielsson and
               Bj{\"{o}}rn Olsson},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Weighted Cohesiveness for Identification of Functional Modules and
               Their Interconnectivity},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {185--198},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_15},
  doi       = {10.1007/978-3-540-71233-6\_15},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/LubovacCGO07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/MarraR07,
  author    = {Domenico Marra and
               Paolo Romano},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Integrating Mutations Data of the {TP53} Human Gene in the Bioinformatics
               Network Environment},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {453--463},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_35},
  doi       = {10.1007/978-3-540-71233-6\_35},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/MarraR07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/MeyerKB07,
  author    = {Patrick E. Meyer and
               Kevin Kontos and
               Gianluca Bontempi},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Biological Network Inference Using Redundancy Analysis},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {16--27},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_2},
  doi       = {10.1007/978-3-540-71233-6\_2},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/MeyerKB07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/Navajas-PerezRGAR07,
  author    = {Rafael Navajas{-}P{\'{e}}rez and
               Manuel Ruiz Rej{\'{o}}n and
               Manuel A. Garrido{-}Ramos and
               Jos{\'{e}} Luis Aznarte and
               Cristina Rubio{-}Escudero},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {satDNA Analyzer 1.2 as a Valuable Computing Tool for Evolutionary
               Analysis of Satellite-DNA Families: Revisiting Y-Linked Satellite-DNA
               Sequences of \emph{Rumex } (Polygonaceae)},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {131--139},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_11},
  doi       = {10.1007/978-3-540-71233-6\_11},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/Navajas-PerezRGAR07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/NimmanpipugLCPT07,
  author    = {Piyarat Nimmanpipug and
               Vannajan Sanghiran Lee and
               Jeerayut Chaijaruwanich and
               Sukon Prasitwattanaseree and
               Patrinee Traisathit},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Structural Screening of {HIV-1} Protease/Inhibitor Docking by Non-parametric
               Binomial Distribution Test},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {119--130},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_10},
  doi       = {10.1007/978-3-540-71233-6\_10},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/NimmanpipugLCPT07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/PizziRU07,
  author    = {Cinzia Pizzi and
               Pasi Rastas and
               Esko Ukkonen},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Fast Search Algorithms for Position Specific Scoring Matrices},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {239--250},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_19},
  doi       = {10.1007/978-3-540-71233-6\_19},
  timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/PizziRU07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/RaddeK07,
  author    = {Nicole Radde and
               Lars Kaderali},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Bayesian Inference of Gene Regulatory Networks Using Gene Expression
               Time Series Data},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {1--15},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_1},
  doi       = {10.1007/978-3-540-71233-6\_1},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/RaddeK07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/SaidiMN07,
  author    = {Rabie Saidi and
               Mondher Maddouri and
               Engelbert Mephu Nguifo},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Biological Sequences Encoding for Supervised Classification},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {224--238},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_18},
  doi       = {10.1007/978-3-540-71233-6\_18},
  timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/SaidiMN07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/SakakibaraAS07,
  author    = {Yasubumi Sakakibara and
               Kiyoshi Asai and
               Kengo Sato},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Stem Kernels for {RNA} Sequence Analyses},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {278--291},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_22},
  doi       = {10.1007/978-3-540-71233-6\_22},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/SakakibaraAS07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/Scholz07,
  author    = {Matthias Scholz},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Analysing Periodic Phenomena by Circular {PCA}},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {38--47},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_4},
  doi       = {10.1007/978-3-540-71233-6\_4},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/Scholz07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/ShahS07,
  author    = {Jehan Zeb Shah and
               Naomie Salim},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {A Soft Hierarchical Algorithm for the Clustering of Multiple Bioactive
               Chemical Compounds},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {140--153},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_12},
  doi       = {10.1007/978-3-540-71233-6\_12},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/ShahS07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/SteinhofelSA07,
  author    = {Kathleen Steinh{\"{o}}fel and
               Alexandros Skaliotis and
               Andreas Alexander Albrecht},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Stochastic Protein Folding Simulation in the d-Dimensional HP-Model},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {381--394},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_30},
  doi       = {10.1007/978-3-540-71233-6\_30},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/SteinhofelSA07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/SuHCOO07,
  author    = {Chung{-}Tsai Su and
               Tong{-}Ming Hsu and
               Chien{-}Yu Chen and
               Yu{-}Yen Ou and
               Yen{-}Jen Oyang},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Enhancing Protein Disorder Detection by Refined Secondary Structure
               Prediction},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {395--409},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_31},
  doi       = {10.1007/978-3-540-71233-6\_31},
  timestamp = {Mon, 18 Sep 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/SuHCOO07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/TautenhahnBN07,
  author    = {Ralf Tautenhahn and
               Christoph B{\"{o}}ttcher and
               Steffen Neumann},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Annotation of {LC/ESI-MS} Mass Signals},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {371--380},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_29},
  doi       = {10.1007/978-3-540-71233-6\_29},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/TautenhahnBN07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/TsiporkovaB07,
  author    = {Elena Tsiporkova and
               Veselka Boeva},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Modelling and Simulation of the Genetic Phenomena of Additivity and
               Dominance via Gene Networks of Parallel Aggregation Processes},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {199--211},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_16},
  doi       = {10.1007/978-3-540-71233-6\_16},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/TsiporkovaB07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/YoonGKK07,
  author    = {Ji Won Yoon and
               Simon J. Godsill and
               ChulHun Kang and
               Tae{-}Seong Kim},
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Bayesian Inference for 2D Gel Electrophoresis Image Analysis},
  booktitle = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  pages     = {343--356},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6\_27},
  doi       = {10.1007/978-3-540-71233-6\_27},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/YoonGKK07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bird/2007,
  editor    = {Sepp Hochreiter and
               Roland Wagner},
  title     = {Bioinformatics Research and Development, First International Conference,
               {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4414},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-71233-6},
  doi       = {10.1007/978-3-540-71233-6},
  isbn      = {978-3-540-71232-9},
  timestamp = {Tue, 14 May 2019 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/conf/bird/2007.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
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