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José V. Manjón
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Journal Articles
- 2022
- [j29]José V. Manjón, José E. Romero, Roberto Vivó Hernando, Gregorio Rubio, Fernando Aparici-Robles, María de la Iglesia-Vayá, Pierrick Coupé
:
vol2Brain: A New Online Pipeline for Whole Brain MRI Analysis. Frontiers Neuroinformatics 16: 862805 (2022) - [j28]Reda Abdellah Kamraoui
, Vinh-Thong Ta, Thomas Tourdias
, Boris Mansencal
, José V. Manjón, Pierrick Coupé
:
DeepLesionBrain: Towards a broader deep-learning generalization for multiple sclerosis lesion segmentation. Medical Image Anal. 76: 102312 (2022) - 2021
- [j27]Kilian Hett, Vinh-Thong Ta, Ipek Oguz, José V. Manjón, Pierrick Coupé:
Multi-scale graph-based grading for Alzheimer's disease prediction. Medical Image Anal. 67: 101850 (2021) - 2020
- [j26]Pierrick Coupé
, Boris Mansencal
, Michaël Clément, Rémi Giraud, Baudouin Denis de Senneville
, Vinh-Thong Ta, Vincent Lepetit, José V. Manjón:
AssemblyNet: A large ensemble of CNNs for 3D whole brain MRI segmentation. NeuroImage 219: 117026 (2020) - 2018
- [j25]José V. Manjón, Pierrick Coupé
, Parnesh Raniga, Ying Xia
, Patricia M. Desmond
, Jurgen Fripp
, Olivier Salvado
:
MRI white matter lesion segmentation using an ensemble of neural networks and overcomplete patch-based voting. Comput. Medical Imaging Graph. 69: 43-51 (2018) - [j24]Kilian Hett, Vinh-Thong Ta, José V. Manjón, Pierrick Coupé, Alzheimer's Disease Neuroimaging Initiative:
Adaptive fusion of texture-based grading for Alzheimer's disease classification. Comput. Medical Imaging Graph. 70: 8-16 (2018) - [j23]José E. Romero, Pierrick Coupé, José V. Manjón:
Corrigendum to "HIPS: A new hippocampus subfield segmentation method" [NeuroImage 163 (2017) 286-295]. NeuroImage 172: 914 (2018) - [j22]Aaron Carass, Jennifer L. Cuzzocreo, Shuo Han, Carlos R. Hernandez-Castillo, Paul E. Rasser, Melanie Ganz
, Vincent Beliveau
, Jose Dolz, Ismail Ben Ayed, Christian Desrosiers, Benjamin Thyreau, José E. Romero, Pierrick Coupé
, José V. Manjón, Vladimir S. Fonov
, D. Louis Collins
, Sarah H. Ying, Chiadi U. Onyike, Jerry L. Prince:
Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images. NeuroImage 183: 150-172 (2018) - 2017
- [j21]Long Xie, John Pluta, Sandhitsu R. Das, Laura E. M. Wisse, Hongzhi Wang, Lauren Mancuso, Dasha Kliot, Brian B. Avants
, Song-Lin Ding
, José V. Manjón, David A. Wolk, Paul A. Yushkevich
:
Multi-template analysis of human perirhinal cortex in brain MRI: Explicitly accounting for anatomical variability. NeuroImage 144: 183-202 (2017) - [j20]José E. Romero, Pierrick Coupé
, Rémi Giraud, Vinh-Thong Ta, Vladimir S. Fonov
, Min Tae M. Park
, M. Mallar Chakravarty, Aristotle N. Voineskos
, José V. Manjón:
CERES: A new cerebellum lobule segmentation method. NeuroImage 147: 916-924 (2017) - [j19]José E. Romero, Pierrick Coupé
, José V. Manjón:
HIPS: A new hippocampus subfield segmentation method. NeuroImage 163: 286-295 (2017) - 2016
- [j18]Erhard T. Næss-Schmidt
, Anna Tietze
, Jakob Udby Blicher
, Mikkel V. Petersen
, Irene K. Mikkelsen, Pierrick Coupé
, José V. Manjón, Simon F. Eskildsen
:
Automatic thalamus and hippocampus segmentation from MP2RAGE: comparison of publicly available methods and implications for DTI quantification. Int. J. Comput. Assist. Radiol. Surg. 11(11): 1979-1991 (2016) - [j17]José V. Manjón, Pierrick Coupé
:
volBrain: An Online MRI Brain Volumetry System. Frontiers Neuroinformatics 10: 30 (2016) - [j16]Rémi Giraud, Vinh-Thong Ta, Nicolas Papadakis, José V. Manjón, D. Louis Collins
, Pierrick Coupé
:
An Optimized PatchMatch for multi-scale and multi-feature label fusion. NeuroImage 124: 770-782 (2016) - 2015
- [j15]José V. Manjón, Pierrick Coupé
, Antonio Buades
:
MRI noise estimation and denoising using non-local PCA. Medical Image Anal. 22(1): 35-47 (2015) - 2014
- [j14]José V. Manjón, Simon F. Eskildsen
, Pierrick Coupé
, José E. Romero, D. Louis Collins
, Montserrat Robles
:
Nonlocal Intracranial Cavity Extraction. Int. J. Biomed. Imaging 2014: 820205:1-820205:11 (2014) - 2013
- [j13]Pierrick Coupé
, José V. Manjón, Maxime Chamberland
, Maxime Descoteaux, Bassem Hiba
:
Collaborative patch-based super-resolution for diffusion-weighted images. NeuroImage 83: 245-261 (2013) - 2012
- [j12]José V. Manjón, Pierrick Coupé
, Antonio Buades
, D. Louis Collins
, Montserrat Robles
:
New methods for MRI denoising based on sparseness and self-similarity. Medical Image Anal. 16(1): 18-27 (2012) - [j11]Pierrick Coupé
, Martin Munz
, José V. Manjón, Edward S. Ruthazer
, D. Louis Collins
:
A CANDLE for a deeper in vivo insight. Medical Image Anal. 16(4): 849-864 (2012) - [j10]Simon F. Eskildsen
, Pierrick Coupé
, Vladimir S. Fonov
, José V. Manjón, Kelvin K. Leung, Nicolas Guizard, Shafik N. Wassef, Lasse Riis Østergaard
, D. Louis Collins
:
BEaST: Brain extraction based on nonlocal segmentation technique. NeuroImage 59(3): 2362-2373 (2012) - [j9]Pierrick Coupé
, Simon F. Eskildsen
, José V. Manjón, Vladimir S. Fonov
, D. Louis Collins
:
Simultaneous segmentation and grading of anatomical structures for patient's classification: Application to Alzheimer's disease. NeuroImage 59(4): 3736-3747 (2012) - 2011
- [j8]Pierrick Coupé
, José V. Manjón, Vladimir S. Fonov
, Jens C. Pruessner
, Montserrat Robles
, D. Louis Collins
:
Patch-based segmentation using expert priors: Application to hippocampus and ventricle segmentation. NeuroImage 54(2): 940-954 (2011) - 2010
- [j7]José V. Manjón, Pierrick Coupé
, Antonio Buades
, D. Louis Collins
, Montserrat Robles
:
MRI Superresolution Using Self-Similarity and Image Priors. Int. J. Biomed. Imaging 2010: 425891:1-425891:11 (2010) - [j6]Pierrick Coupé
, José V. Manjón, Elias Gedamu, Douglas L. Arnold
, Montserrat Robles
, D. Louis Collins
:
Robust Rician noise estimation for MR images. Medical Image Anal. 14(4): 483-493 (2010) - [j5]José V. Manjón, Pierrick Coupé
, Antonio Buades
, Vladimir S. Fonov
, D. Louis Collins
, Montserrat Robles
:
Non-local MRI upsampling. Medical Image Anal. 14(6): 784-792 (2010) - [j4]José V. Manjón, Jussi Tohka
, Montserrat Robles
:
Improved estimates of partial volume coefficients from noisy brain MRI using spatial context. NeuroImage 53(2): 480-490 (2010) - 2009
- [j3]José V. Manjón, Neil A. Thacker, Juan José Lull
, Gracián García-Martí, Luis Martí-Bonmatí
, Montserrat Robles
:
Multicomponent MR Image Denoising. Int. J. Biomed. Imaging 2009: 756897:1-756897:10 (2009) - 2008
- [j2]José V. Manjón, José Carbonell-Caballero
, Juan José Lull
, Gracián García-Martí, Luis Martí-Bonmatí
, Montserrat Robles
:
MRI denoising using Non-Local Means. Medical Image Anal. 12(4): 514-523 (2008) - 2007
- [j1]José V. Manjón, Juan José Lull
, José Carbonell-Caballero
, Gracián García-Martí, Luis Martí-Bonmatí
, Montserrat Robles
:
A nonparametric MRI inhomogeneity correction method. Medical Image Anal. 11(4): 336-345 (2007)
Conference and Workshop Papers
- 2021
- [c21]Reda Abdellah Kamraoui
, Vinh-Thong Ta, Nicolas Papadakis, Fanny Compaire, José V. Manjón, Pierrick Coupé
:
POPCORN: Progressive Pseudo-Labeling with Consistency Regularization and Neighboring. MICCAI (2) 2021: 373-382 - 2020
- [c20]José V. Manjón, José E. Romero, Roberto Vivó Hernando, Gregorio Rubio, Fernando Aparici-Robles, María de la Iglesia-Vayá, Thomas Tourdias, Pierrick Coupé
:
Blind MRI Brain Lesion Inpainting Using Deep Learning. SASHIMI@MICCAI 2020: 41-49 - 2019
- [c19]Pierrick Coupé
, Boris Mansencal
, Michaël Clément, Rémi Giraud, Baudouin Denis de Senneville
, Vinh-Thong Ta, Vincent Lepetit, José V. Manjón:
AssemblyNet: A Novel Deep Decision-Making Process for Whole Brain MRI Segmentation. MICCAI (3) 2019: 466-474 - 2018
- [c18]José V. Manjón, Pierrick Coupé
:
MRI Denoising Using Deep Learning. Patch-MI@MICCAI 2018: 12-19 - [c17]Lee B. Reid
, Ashley Gillman
, Alex M. Pagnozzi
, José V. Manjón
, Jurgen Fripp
:
MRI Denoising and Artefact Removal Using Self-Organizing Maps for Fast Global Block-Matching. Patch-MI@MICCAI 2018: 20-27 - [c16]Pierrick Coupé
, Thomas Tourdias, Pierre Linck, José E. Romero, José V. Manjón:
LesionBrain: An Online Tool for White Matter Lesion Segmentation. Patch-MI@MICCAI 2018: 95-103 - [c15]Kilian Hett, Vinh-Thong Ta, José V. Manjón, Pierrick Coupé:
Graph of Hippocampal Subfields Grading for Alzheimer's Disease Prediction. MLMI@MICCAI 2018: 259-266 - [c14]Kilian Hett, Vinh-Thong Ta, José V. Manjón, Pierrick Coupé:
Graph of Brain Structures Grading for Early Detection of Alzheimer's Disease. MICCAI (3) 2018: 429-436 - 2017
- [c13]Ying Xia
, José V. Manjón, Craig Engstrom
, Stuart Crozier
, Olivier Salvado, Jurgen Fripp:
Automated cartilage segmentation from 3D MR images of hip joint using an ensemble of neural networks. ISBI 2017: 1070-1073 - [c12]José V. Manjón, Pierrick Coupé
:
Hippocampus Subfield Segmentation Using a Patch-Based Boosted Ensemble of Autocontext Neural Networks. Patch-MI@MICCAI 2017: 29-36 - [c11]Gerard Sanroma, Víctor Andrea, Oualid M. Benkarim
, José V. Manjón, Pierrick Coupé
, Oscar Camara
, Gemma Piella
, Miguel Ángel González Ballester:
Early Prediction of Alzheimer's Disease with Non-local Patch-Based Longitudinal Descriptors. Patch-MI@MICCAI 2017: 74-81 - [c10]Kilian Hett, Vinh-Thong Ta, José V. Manjón, Pierrick Coupé
:
Adaptive Fusion of Texture-Based Grading: Application to Alzheimer's Disease Detection. Patch-MI@MICCAI 2017: 82-89 - 2016
- [c9]José E. Romero, Pierrick Coupé
, José V. Manjón:
Non-local MRI Library-Based Super-Resolution: Application to Hippocampus Subfield Segmentation. Patch-MI@MICCAI 2016: 68-75 - [c8]Kilian Hett, Vinh-Thong Ta, Rémi Giraud, Mary Mondino, José V. Manjón, Pierrick Coupé
:
Patch-Based DTI Grading: Application to Alzheimer's Disease Classification. Patch-MI@MICCAI 2016: 76-83 - [c7]José V. Manjón, Pierrick Coupé
, Parnesh Raniga
, Ying Xia
, Jurgen Fripp
, Olivier Salvado:
HIST: HyperIntensity Segmentation Tool. Patch-MI@MICCAI 2016: 92-99 - [c6]José E. Romero, Pierrick Coupé
, José V. Manjón:
High Resolution Hippocampus Subfield Segmentation Using Multispectral Multiatlas Patch-Based Label Fusion. Patch-MI@MICCAI 2016: 117-124 - [c5]Long Xie, Laura E. M. Wisse, Sandhitsu R. Das, Hongzhi Wang, David A. Wolk, José V. Manjón, Paul A. Yushkevich
:
Accounting for the Confound of Meninges in Segmenting Entorhinal and Perirhinal Cortices in T1-Weighted MRI. MICCAI (2) 2016: 564-571 - 2015
- [c4]Erhard T. Næss-Schmidt
, Anna Tietze, Irene K. Mikkelsen, Mikkel V. Petersen
, Jakob Udby Blicher, Pierrick Coupé
, José V. Manjón, Simon F. Eskildsen
:
Patch-Based Segmentation from MP2RAGE Images: Comparison to Conventional Techniques. Patch-MI@MICCAI 2015: 180-187 - 2011
- [c3]Pierrick Coupé
, Simon F. Eskildsen
, José V. Manjón, Vladimir S. Fonov
, D. Louis Collins
:
Simultaneous Segmentation and Grading of Hippocampus for Patient Classification with Alzheimer's Disease. MICCAI (3) 2011: 149-157 - 2010
- [c2]Pierrick Coupé
, José V. Manjón, Vladimir S. Fonov
, Jens C. Pruessner, Montserrat Robles, D. Louis Collins
:
Nonlocal Patch-Based Label Fusion for Hippocampus Segmentation. MICCAI (3) 2010: 129-136 - 2009
- [c1]Pierrick Coupé
, José V. Manjón, Elias Gedamu, Douglas L. Arnold, Montserrat Robles, D. Louis Collins
:
An Object-Based Method for Rician Noise Estimation in MR Images. MICCAI (1) 2009: 601-608
Informal and Other Publications
- 2024
- [i12]Marina Ruiz-Perez, Sergio Morell-Ortega, Marien Gadea, Roberto Vivó Hernando, Gregorio Rubio, Fernando Aparici-Robles, María de la Iglesia-Vayá, Thomas Tourdias, Pierrick Coupé, José V. Manjón:
DeepThalamus: A novel deep learning method for automatic segmentation of brain thalamic nuclei from multimodal ultra-high resolution MRI. CoRR abs/2401.07751 (2024) - [i11]Sergio Morell-Ortega, Marina Ruiz-Perez, Marien Gadea, Roberto Vivó Hernando, Gregorio Rubio, Fernando Aparici-Robles, María de la Iglesia-Vayá, Gwenaelle Catheline, Pierrick Coupé, José V. Manjón:
DeepCERES: A Deep learning method for cerebellar lobule segmentation using ultra-high resolution multimodal MRI. CoRR abs/2401.12074 (2024) - 2022
- [i10]Reda Abdellah Kamraoui, Boris Mansencal, José V. Manjón, Pierrick Coupé:
Longitudinal detection of new MS lesions using Deep Learning. CoRR abs/2206.08272 (2022) - 2021
- [i9]Reda Abdellah Kamraoui
, Vinh-Thong Ta, Nicolas Papadakis, Fanny Compaire, José V. Manjón, Pierrick Coupé
:
POPCORN: Progressive Pseudo-labeling with Consistency Regularization and Neighboring. CoRR abs/2109.06361 (2021) - 2020
- [i8]Baudouin Denis de Senneville, José V. Manjón, Pierrick Coupé:
RegQCNET: Deep Quality Control for Image-to-template Brain MRI Registration. CoRR abs/2005.06835 (2020) - [i7]Reda Abdellah Kamraoui
, Vinh-Thong Ta, Thomas Tourdias, Boris Mansencal, José V. Manjón, Pierrick Coupé:
Towards broader generalization of deep learning methods for multiple sclerosis lesion segmentation. CoRR abs/2012.07950 (2020) - 2019
- [i6]Rémi Giraud, Vinh-Thong Ta, Nicolas Papadakis, José V. Manjón, D. Louis Collins, Pierrick Coupé, Alzheimer's Disease Neuroimaging Initiative:
An Optimized PatchMatch for Multi-scale and Multi-feature Label Fusion. CoRR abs/1903.07165 (2019) - [i5]Pierrick Coupé, Boris Mansencal, Michaël Clément, Rémi Giraud, Baudouin Denis de Senneville, Vinh-Thong Ta, Vincent Lepetit, José V. Manjón:
AssemblyNet: A Novel Deep Decision-Making Process for Whole Brain MRI Segmentation. CoRR abs/1906.01862 (2019) - [i4]Kilian Hett, Vinh-Thong Ta, José V. Manjón, Pierrick Coupé:
Multi-scale Graph-based Grading for Alzheimer's Disease Prediction. CoRR abs/1907.06625 (2019) - [i3]José V. Manjón, Pierrick Coupé:
MRI denoising using Deep Learning and Non-local averaging. CoRR abs/1911.04798 (2019) - [i2]Pierrick Coupé, Boris Mansencal, Michaël Clément, Rémi Giraud, Baudouin Denis de Senneville, Vinh-Thong Ta, Vincent Lepetit, José V. Manjón:
AssemblyNet: A large ensemble of CNNs for 3D Whole Brain MRI Segmentation. CoRR abs/1911.09098 (2019) - 2018
- [i1]Kilian Hett, Vinh-Thong Ta, José Vicente Manjón, Pierrick Coupé
:
Graph of brain structures grading for early detection of Alzheimer's disease. CoRR abs/1807.03173 (2018)
Coauthor Index
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