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Journal Articles

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2023
[j9]
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Yohan Chatelain, Nigel Yong Sao Young, Gregory Kiar, Tristan Glatard:
PyTracer: Automatically Profiling Numerical Instabilities in Python. IEEE Trans. Computers 72(6): 1792-1803 (2023)
2021
[j8]
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  - journals/ploscb/BridgefordWWXCD21
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Eric W. Bridgeford, Shangsi Wang, Zeyi Wang, Ting Xu, R. Cameron Craddock, Jayanta Dey, Gregory Kiar, William R. Gray Roncal, Carlo Colantuoni, Christopher Douville, Stephanie Noble, Carey E. Priebe, Brian Caffo, Michael P. Milham, Xi-Nian Zuo, Joshua T. Vogelstein:
Eliminating accidental deviations to minimize generalization error and maximize replicability: Applications in connectomics and genomics. PLoS Comput. Biol. 17(9) (2021)
2020
[j7]
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Jorge Bosch-Bayard, Eduardo Aubert-Vázquez, Shawn T. Brown, Christine Rogers, Gregory Kiar, Tristan Glatard, Lalet Scaria, Lídice Galán-García, Maria L. Bringas-Vega, Trinidad Virués-Alba, Armin Taheri, Samir Das, Cecile Madjar, Zia Mohaddes, Leigh C. MacIntyre, Alan C. Evans, Pedro A. Valdés-Sosa:
A Quantitative EEG Toolbox for the MNI Neuroinformatics Ecosystem: Normative SPM of EEG Source Spectra. Frontiers Neuroinformatics 14: 33 (2020)
[j6]
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Gregory Kiar, Pablo de Oliveira Castro, Pierre Rioux, Eric Petit, Shawn T. Brown, Alan C. Evans, Tristan Glatard:
Comparing perturbation models for evaluating stability of neuroimaging pipelines. Int. J. High Perform. Comput. Appl. 34(5) (2020)
[j5]
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Mingli Zhang, Christian Desrosiers, Yuhong Guo, Budhachandra S. Khundrakpam, Noor Al-Sharif, Gregory Kiar, Pedro A. Valdés-Sosa, Jean-Baptiste Poline, Alan C. Evans:
Brain status modeling with non-negative projective dictionary learning. NeuroImage 206 (2020)
2019
[j4]
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Gregory Kiar, Shawn T. Brown, Tristan Glatard, Alan C. Evans:
A Serverless Tool for Platform Agnostic Computational Experiment Management. Frontiers Neuroinformatics 13: 12 (2019)
[j3]
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Quinten McNamara, Krista Destasio, Jean-Baptiste Poline, Dmitry Petrov, Valérie Hayot-Sasson, Dylan Nielson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Elizabeth Dupre, Adina S. Wagner, Lee S. Tirrell, Mainak Jas, Michael Hanke, Russell A. Poldrack, Oscar Esteban, Stefan Appelhoff, Chris Holdgraf, Isla Staden, Bertrand Thirion, Dave F. Kleinschmidt, John A. Lee, Matteo di Castello, Michael Notter, Ross Blair:
PyBIDS: Python tools for BIDS datasets. J. Open Source Softw. 4(40): 1294 (2019)
2018
[j2]
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Jordan Matelsky, Gregory Kiar, Erik C. Johnson, Corban Rivera, Michael Toma, William R. Gray Roncal:
Container-Based Clinical Solutions for Portable and Reproducible Image Analysis. J. Digit. Imaging 31(3): 315-320 (2018)
2017
[j1]
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Krzysztof J. Gorgolewski, Fidel Alfaro-Almagro, Tibor Auer, Pierre Bellec, Mihai Capota, M. Mallar Chakravarty, Nathan William Churchill, Alexander Li Cohen, R. Cameron Craddock, Gabriel A. Devenyi, Anders Eklund, Oscar Esteban, Guillaume Flandin, Satrajit S. Ghosh, J. Swaroop Guntupalli, Mark Jenkinson, Anisha Keshavan, Gregory Kiar, Franziskus Liem, Pradeep Reddy Raamana, David Raffelt, Christopher John Steele, Pierre-Olivier Quirion, Robert E. Smith, Stephen C. Strother, Gaël Varoquaux, Yida Wang, Tal Yarkoni, Russell A. Poldrack:
BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. PLoS Comput. Biol. 13(3) (2017)

Conference and Workshop Papers

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2021
[c4]
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Marc Vicuna, Martin Khannouz, Gregory Kiar, Yohan Chatelain, Tristan Glatard:
Reducing numerical precision preserves classification accuracy in Mondrian Forests. IEEE BigData 2021: 2785-2790
[c3]
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Ali Salari, Yohan Chatelain, Gregory Kiar, Tristan Glatard:
Accurate Simulation of Operating System Updates in Neuroimaging Using Monte-Carlo Arithmetic. UNSURE/PIPPI@MICCAI 2021: 14-23
[c2]
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Mandana Mazaheri, Gregory Kiar, Tristan Glatard:
A Recommender System for Scientific Datasets and Analysis Pipelines. WORKS 2021: 1-8
2020
[c1]
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Pierre Rioux, Gregory Kiar, Alexandre Hutton, Alan C. Evans, Shawn T. Brown:
Deploying large fixed file datasets with SquashFS and Singularity. PEARC 2020: 72-76

Data and Artifacts

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2023
[d29]
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Oscar Esteban, Remi Gau, Dimitri Papadopoulos Orfanos, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Evgenii Kalenkovich, Dmitry Petrov, Dylan M. Nielson, James D. Kent, Stefan Appelhoff, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Jeanette Mumford, Alexis Thual, Chris Holdgraf, Isla Staden, Jason A. Staph, William Drew, Ankur Sinha, Antonin Rovai, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Gal Ben-Zvi, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Sarthak Pati, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2023
[d28]
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Oscar Esteban, Quinten McNamara, Krista DeStasio, Remi Gau, Jean-Baptiste Poline, Hans J. Johnson, Evgenii Kalenkovich, Dmitry Petrov, Dylan M. Nielson, James D. Kent, Stefan Appelhoff, Dimitri Papadopoulos Orfanos, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Jeanette Mumford, Alexis Thual, Chris Holdgraf, Isla Staden, Jason A. Staph, William Drew, Ankur Sinha, Antonin Rovai, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Gal Ben-Zvi, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Sarthak Pati, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2023
2022
[d27]
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Oscar Esteban, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Remi Gau, Hans J. Johnson, Evgenii Kalenkovich, Dmitry Petrov, Dylan M. Nielson, James D. Kent, Stefan Appelhoff, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Dimitri Papadopoulos Orfanos, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Jeanette A. Mumford, Alexis Thual, Chris Holdgraf, Isla Staden, Jason A. Staph, Antonin Rovai, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Gal Ben-Zvi, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2022
[d26]
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Oscar Esteban, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Remi Gau, Hans J. Johnson, Evgenii Kalenkovich, Dmitry Petrov, Dylan M. Nielson, James D. Kent, Stefan Appelhoff, Dimitri Papadopoulos Orfanos, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Jeanette Mumford, Alexis Thual, Chris Holdgraf, Isla Staden, Jason A. Staph, Antonin Rovai, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Gal Ben-Zvi, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2022
[d25]
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Oscar Esteban, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Remi Gau, Evgenii Kalenkovich, Dmitry Petrov, Dylan M. Nielson, James D. Kent, Stefan Appelhoff, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Dimitri Papadopoulos Orfanos, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Jeanette A. Mumford, Chris Holdgraf, Isla Staden, Jason A. Staph, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2022
[d24]
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Oscar Esteban, Evgenii Kalenkovich, Dmitry Petrov, Remi Gau, James D. Kent, Stefan Appelhoff, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Dylan M. Nielson, Dimitri Papadopoulos Orfanos, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Nick Guenther, Chris Holdgraf, Isla Staden, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Jason A. Staph, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2022
[d23]
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Oscar Esteban, Evgenii Kalenkovich, Dmitry Petrov, Remi Gau, James D. Kent, Stefan Appelhoff, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Dylan M. Nielson, Dimitri Papadopoulos Orfanos, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Chris Holdgraf, Isla Staden, Jason A. Staph, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2022
[d22]
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Oscar Esteban, Evgenii Kalenkovich, Dmitry Petrov, James D. Kent, Stefan Appelhoff, Shashank Bansal, Valérie Hayot-Sasson, Dylan M. Nielson, Dimitri Papadopoulos Orfanos, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Mathias Goncalves, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Russell Poldrack, Chadwick B. Boulay, Chris Holdgraf, Isla Staden, Remi Gau, Ariel Rokem, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Jason A. Staph, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Nick Guenther, Pauline Roca, Ross Blair, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2022
2021
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Oscar Esteban, Evgenii Kalenkovich, Dmitry Petrov, James D. Kent, Stefan Appelhoff, Shashank Bansal, Valérie Hayot-Sasson, Dylan M. Nielson, Dimitri Papadopoulos Orfanos, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Mathias Goncalves, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Russell Poldrack, Chadwick B. Boulay, Chris Holdgraf, Isla Staden, Remi Gau, Ariel Rokem, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2021
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Oscar Esteban, Dmitry Petrov, James D. Kent, Stefan Appelhoff, Valérie Hayot-Sasson, Dylan M. Nielson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Mathias Goncalves, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth Dupre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Mainak Jas, Michael Hanke, Russell Poldrack, Chadwick B. Boulay, Chris Holdgraf, Evgenii Kalenkovich, Isla Staden, Remi Gau, Ariel Rokem, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Shashank Bansal, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2021
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Oscar Esteban, Dmitry Petrov, James D. Kent, Stefan Appelhoff, Valérie Hayot-Sasson, Dylan M. Nielson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Mathias Goncalves, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth Dupre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Russell Poldrack, Chadwick B. Boulay, Chris Holdgraf, Evgenii Kalenkovich, Isla Staden, Remi Gau, Ariel Rokem, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Shashank Bansal, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2021
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Oscar Esteban, Dmitry Petrov, James D. Kent, Stefan Appelhoff, Valérie Hayot-Sasson, Dylan M. Nielson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Mathias Goncalves, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Russell Poldrack, Chadwick B. Boulay, Chris Holdgraf, Evgenii Kalenkovich, Isla Staden, Remi Gau, Ariel Rokem, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Shashank Bansal, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2021
2020
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Yaroslav O. Halchenko, Taylor Salo, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Oscar Esteban, Dmitry Petrov, Valérie Hayot-Sasson, James D. Kent, Dylan M. Nielson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth Dupre, Stefan Appelhoff, Andrew Janke, Alexander Ivanov, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Jon Haitz Legarreta, Mainak Jas, Michael Hanke, Russell Poldrack, Chadwick B. Boulay, Chris Holdgraf, Isla Staden, Remi Gau, Ariel Rokem, Ashley Gillman, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, John A. Lee, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2020
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Yaroslav O. Halchenko, Taylor Salo, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Oscar Esteban, Dmitry Petrov, Valérie Hayot-Sasson, James D. Kent, Dylan M. Nielson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth Dupre, Stefan Appelhoff, Andrew Janke, Alexander Ivanov, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Jon Haitz Legarreta, Mainak Jas, Michael Hanke, Russell Poldrack, Chadwick B. Boulay, Chris Holdgraf, Isla Staden, Remi Gau, Ariel Rokem, Ashley Gillman, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, John A. Lee, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2020
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Oscar Esteban, Dmitry Petrov, James D. Kent, Stefan Appelhoff, Valérie Hayot-Sasson, Dylan M. Nielson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth Dupre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Mainak Jas, Michael Hanke, Russell Poldrack, Chadwick B. Boulay, Chris Holdgraf, Evgenii Kalenkovich, Isla Staden, Remi Gau, Ariel Rokem, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, John A. Lee, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2020
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Oscar Esteban, Dmitry Petrov, James D. Kent, Stefan Appelhoff, Valérie Hayot-Sasson, Dylan M. Nielson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth Dupre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Mainak Jas, Michael Hanke, Russell Poldrack, Chadwick B. Boulay, Chris Holdgraf, Evgenii Kalenkovich, Isla Staden, Remi Gau, Ariel Rokem, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, John A. Lee, Mathias Goncalves, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2020
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Oscar Esteban, Dmitry Petrov, James D. Kent, Stefan Appelhoff, Valérie Hayot-Sasson, Dylan M. Nielson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth Dupre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Mainak Jas, Michael Hanke, Russell Poldrack, Chadwick B. Boulay, Chris Holdgraf, Evgenii Kalenkovich, Isla Staden, Remi Gau, Ariel Rokem, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, John A. Lee, Mathias Goncalves, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2020
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Oscar Esteban, Dmitry Petrov, James D. Kent, Stefan Appelhoff, Valérie Hayot-Sasson, Dylan M. Nielson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Mathias Goncalves, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth Dupre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Mainak Jas, Michael Hanke, Russell Poldrack, Chadwick B. Boulay, Chris Holdgraf, Evgenii Kalenkovich, Isla Staden, Remi Gau, Ariel Rokem, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2020
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Oscar Esteban, Dmitry Petrov, James D. Kent, Stefan Appelhoff, Valérie Hayot-Sasson, Dylan M. Nielson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Mathias Goncalves, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth Dupre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Mainak Jas, Michael Hanke, Russell Poldrack, Chadwick B. Boulay, Chris Holdgraf, Evgenii Kalenkovich, Isla Staden, Remi Gau, Ariel Rokem, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2020
2019
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Yaroslav O. Halchenko, Taylor Salo, Quinten McNamara, Krista Destasio, Jean-Baptiste Poline, Hans J. Johnson, Dmitry Petrov, Valérie Hayot-Sasson, Dylan Nielson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth Dupre, Stefan Appelhoff, Oscar Esteban, Alexander Ivanov, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Jon Haitz Legarreta, Mainak Jas, Michael Hanke, Russell Poldrack, Chris Holdgraf, Isla Staden, Remi Gau, Ariel Rokem, Ashley Gillman, Bertrand Thirion, Chadwick B. Boulay, Dave F. Kleinschmidt, Erin W. Dickie, John A. Lee, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2019
[d9]
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Yaroslav O. Halchenko, Taylor Salo, Quinten McNamara, Krista Destasio, Jean-Baptiste Poline, Dmitry Petrov, Valérie Hayot-Sasson, Dylan M. Nielson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Adina S. Wagner, Elizabeth Dupre, Alexander Ivanov, Johannes Wennberg, Lee S. Tirrell, Mainak Jas, Michael Hanke, Russell Poldrack, Oscar Esteban, Stefan Appelhoff, Chris Holdgraf, Isla Staden, Ariel Rokem, Bertrand Thirion, Chadwick B. Boulay, Dave F. Kleinschmidt, Erin W. Dickie, John A. Lee, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair:
bids-standard/pybids: 0.9.1. Zenodo, 2019
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Yaroslav O. Halchenko, Taylor Salo, Quinten McNamara, Krista Destasio, Jean-Baptiste Poline, Dmitry Petrov, Valérie Hayot-Sasson, Dylan M. Nielson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Adina S. Wagner, Elizabeth Dupre, Stefan Appelhoff, Alexander Ivanov, Johannes Wennberg, Lee S. Tirrell, Oscar Esteban, Mainak Jas, Michael Hanke, Russell Poldrack, Chris Holdgraf, Isla Staden, Ariel Rokem, Bertrand Thirion, Chadwick B. Boulay, Dave F. Kleinschmidt, Erin W. Dickie, John A. Lee, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2019
[d7]
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Yaroslav O. Halchenko, Taylor Salo, Quinten McNamara, Krista Destasio, Jean-Baptiste Poline, Dmitry Petrov, Valérie Hayot-Sasson, Dylan M. Nielson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Adina S. Wagner, Elizabeth Dupre, Stefan Appelhoff, Alexander Ivanov, Johannes Wennberg, Lee S. Tirrell, Oscar Esteban, Mainak Jas, Michael Hanke, Russell Poldrack, Chris Holdgraf, Isla Staden, Ariel Rokem, Bertrand Thirion, Chadwick B. Boulay, Dave F. Kleinschmidt, Erin W. Dickie, John A. Lee, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair:
bids-standard/pybids: 0.9.3. Zenodo, 2019
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Yaroslav O. Halchenko, Taylor Salo, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Dmitry Petrov, Valérie Hayot-Sasson, Dylan Nielson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Adina S. Wagner, Elizabeth Dupre, Stefan Appelhoff, Oscar Esteban, Alexander Ivanov, Johannes Wennberg, Lee S. Tirrell, Jon Haitz Legarreta, Mainak Jas, Michael Hanke, Russell Poldrack, Chris Holdgraf, Isla Staden, Remi Gau, Steven Tilley, Ariel Rokem, Bertrand Thirion, Chadwick B. Boulay, Dave F. Kleinschmidt, Erin W. Dickie, John A. Lee, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2019
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Yaroslav O. Halchenko, Taylor Salo, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Dmitry Petrov, Hans J. Johnson, Valérie Hayot-Sasson, Dylan Nielson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth Dupre, Stefan Appelhoff, Oscar Esteban, Alexander Ivanov, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Jon Haitz Legarreta, Mainak Jas, Michael Hanke, Russell Poldrack, Chris Holdgraf, Isla Staden, Remi Gau, Ariel Rokem, Ashley Gillman, Bertrand Thirion, Chadwick B. Boulay, Dave F. Kleinschmidt, Erin W. Dickie, John A. Lee, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2019
[d4]
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Quinten McNamara, Krista Destasio, Jean-Baptiste Poline, Dmitry Petrov, Valérie Hayot-Sasson, Dylan Nielson, Johan D. Carlin, Gregory Kiar, Kirstie Jane Whitaker, Elizabeth Dupre, Adina S. Wagner, Alexander Ivanov, Lee S. Tirrell, Mainak Jas, Michael Hanke, Russell Poldrack, Oscar Esteban, Stefan Appelhoff, Chris Holdgraf, Isla Staden, Ariel Rokem, Bertrand Thirion, Dave F. Kleinschmidt, John A. Lee, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair:
bids-standard/pybids: 0.7.1. Zenodo, 2019
[d3]
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Dmitry Petrov, Valérie Hayot-Sasson, Dylan M. Nielson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Elizabeth Dupre, Adina S. Wagner, Alexander Ivanov, Lee S. Tirrell, Mainak Jas, Michael Hanke, Russell Poldrack, Oscar Esteban, Stefan Appelhoff, Chris Holdgraf, Isla Staden, Ariel Rokem, Bertrand Thirion, Dave F. Kleinschmidt, John A. Lee, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair:
bids-standard/pybids: 0.8.0. Zenodo, 2019
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Dmitry Petrov, Valérie Hayot-Sasson, Dylan M. Nielson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Elizabeth Dupre, Adina S. Wagner, Alexander Ivanov, Lee S. Tirrell, Mainak Jas, Michael Hanke, Russell Poldrack, Oscar Esteban, Stefan Appelhoff, Chris Holdgraf, Isla Staden, Ariel Rokem, Bertrand Thirion, Dave F. Kleinschmidt, John A. Lee, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair:
bids-standard/pybids: 0.9.0. Zenodo, 2019
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Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Quinten McNamara, Krista Destasio, Yaroslav O. Halchenko, Jean-Baptiste Poline, Dmitry Petrov, Valérie Hayot-Sasson, Dylan Nielson, Gregory Kiar, Kirstie Jane Whitaker, Elizabeth Dupre, Alexander Ivanov, Lee S. Tirrell, Mainak Jas, Michael Hanke, Russell Poldrack, Oscar Esteban, Stefan Appelhoff, Chris Holdgraf, Isla Staden, Adina S. Wagner, Ariel Rokem, Bertrand Thirion, Dave F. Kleinschmidt, Johan D. Carlin, John A. Lee, Matteo Visconti di Oleggio Castello, Pauline Roca, Ross Blair:
bids-standard/pybids: 0.7.0. Zenodo, 2019

Informal and Other Publications

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2023
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Yohan Chatelain, Loïc Tetrel, Christopher J. Markiewicz, Mathias Goncalves, Gregory Kiar, Oscar Esteban, Pierre Bellec, Tristan Glatard:
A numerical variability approach to results stability tests and its application to neuroimaging. CoRR abs/2307.01373 (2023)
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Connor Lane, Gregory Kiar:
A Parameter-efficient Multi-subject Model for Predicting fMRI Activity. CoRR abs/2308.02351 (2023)
2022
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Xinhui Li, Alex Fedorov, Mrinal Mathur, Anees Abrol, Gregory Kiar, Sergey M. Plis, Vince D. Calhoun:
Pipeline-Invariant Representation Learning for Neuroimaging. CoRR abs/2208.12909 (2022)
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  - https://dblp.org/rec/journals/corr/abs-2212-06361
Inés Gonzalez Pepe, Yohan Chatelain, Gregory Kiar, Tristan Glatard:
Numerical Stability of DeepGOPlus Inference. CoRR abs/2212.06361 (2022)
2021
[i8]
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  - journals/corr/abs-2106-14340
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Marc Vicuna, Martin Khannouz, Gregory Kiar, Yohan Chatelain, Tristan Glatard:
Reducing numerical precision preserves classification accuracy in Mondrian Forests. CoRR abs/2106.14340 (2021)
[i7]
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  - journals/corr/abs-2108-09275
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Mandana Mazaheri, Gregory Kiar, Tristan Glatard:
A Recommender System for Scientific Datasets and Analysis Pipelines. CoRR abs/2108.09275 (2021)
[i6]
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  - journals/corr/abs-2109-09649
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Gregory Kiar, Yohan Chatelain, Ali Salari, Alan C. Evans, Tristan Glatard:
Data Augmentation Through Monte Carlo Arithmetic Leads to More Generalizable Classification in Connectomics. CoRR abs/2109.09649 (2021)
[i5]
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  - journals/corr/abs-2112-11508
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Yohan Chatelain, Nigel Yong, Gregory Kiar, Tristan Glatard:
PyTracer: Automatically profiling numerical instabilities in Python. CoRR abs/2112.11508 (2021)
2020
[i4]
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  - journals/corr/abs-2002-06129
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Pierre Rioux, Gregory Kiar, Alexandre Hutton, Alan C. Evans, Shawn T. Brown:
Deploying large fixed file datasets with SquashFS and Singularity. CoRR abs/2002.06129 (2020)
2019
[i3]
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  - journals/corr/abs-1908-10922
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  - https://dblp.org/rec/journals/corr/abs-1908-10922
Gregory Kiar, Pablo de Oliveira Castro, Pierre Rioux, Eric Petit, Shawn T. Brown, Alan C. Evans, Tristan Glatard:
Comparing Perturbation Models for Evaluating Stability of Post-Processing Pipelines in Neuroimaging. CoRR abs/1908.10922 (2019)
2018
[i2]
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  - journals/corr/abs-1809-07693
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Gregory Kiar, Shawn T. Brown, Tristan Glatard, Alan C. Evans:
A Serverless Tool for Platform Agnostic Computational Experiment Management. CoRR abs/1809.07693 (2018)
2017
[i1]
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  - journals/corr/abs-1711-09713
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  - https://dblp.org/rec/journals/corr/abs-1711-09713
Tristan Glatard, Gregory Kiar, Tristan Aumentado-Armstrong, Natacha Beck, Pierre Bellec, Rémi Bernard, Axel Bonnet, Sorina Camarasu-Pop, Frédéric Cervenansky, Samir Das, Rafael Ferreira da Silva, Guillaume Flandin, Pascal Girard, Krzysztof J. Gorgolewski, Charles R. G. Guttmann, Valérie Hayot-Sasson, Pierre-Olivier Quirion, Pierre Rioux, Marc-Etienne Rousseau, Alan C. Evans:
Boutiques: a flexible framework for automated application integration in computing platforms. CoRR abs/1711.09713 (2017)

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