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2020 – today
- 2024
[j27]Tianru Zhang
, Ankit Gupta, María Andreína Francisco Rodríguez, Ola Spjuth, Andreas Hellander, Salman Toor:
Data management of scientific applications in a reinforcement learning-based hierarchical storage system. Expert Syst. Appl. 237(Part B): 121443 (2024)- [j26]Sadi Alawadi, Addi Ait-Mlouk, Salman Toor, Andreas Hellander:
Toward efficient resource utilization at edge nodes in federated learning. Prog. Artif. Intell. 13(2): 101-117 (2024) - 2023
- [j25]Sonja Mathias, Igor Adameyko, Andreas Hellander, Jochen Kursawe:
Contributions of cell behavior to geometric order in embryonic cartilage. PLoS Comput. Biol. 19(11) (2023) - [j24]Tianru Zhang, Andreas Hellander, Salman Toor:
Efficient Hierarchical Storage Management Empowered by Reinforcement Learning. IEEE Trans. Knowl. Data Eng. 35(6): 5780-5793 (2023) - [c16]Tianru Zhang, Andreas Hellander, Salman Toor:
Efficient Hierarchical Storage Management Empowered by Reinforcement Learning Extended Abstract. ICDE 2023: 3869-3870 - [i16]Li Ju, Tianru Zhang, Salman Toor, Andreas Hellander:
Accelerating Fair Federated Learning: Adaptive Federated Adam. CoRR abs/2301.09357 (2023) - [i15]Addi Ait-Mlouk, Sadi Alawadi, Salman Toor, Andreas Hellander:
FedBot: Enhancing Privacy in Chatbots with Federated Learning. CoRR abs/2304.03228 (2023) - [i14]Sadi Alawadi, Addi Ait-Mlouk, Salman Toor, Andreas Hellander:
Toward efficient resource utilization at edge nodes in federated learning. CoRR abs/2309.10367 (2023) - 2022
- [j23]Sonja Mathias, Adrien Coulier, Andreas Hellander:
CBMOS: a GPU-enabled Python framework for the numerical study of center-based models. BMC Bioinform. 23(1): 55 (2022) - [j22]Richard M. Jiang, Prashant Singh, Fredrik Wrede, Andreas Hellander, Linda R. Petzold:
Identification of dynamic mass-action biochemical reaction networks using sparse Bayesian methods. PLoS Comput. Biol. 18(1) (2022) - [j21]Adrien Coulier, Prashant Singh, Marc Sturrock, Andreas Hellander:
Systematic comparison of modeling fidelity levels and parameter inference settings applied to negative feedback gene regulation. PLoS Comput. Biol. 18(12): 1010683 (2022) - [j20]Mattias Åkesson, Prashant Singh, Fredrik Wrede, Andreas Hellander:
Convolutional Neural Networks as Summary Statistics for Approximate Bayesian Computation. IEEE ACM Trans. Comput. Biol. Bioinform. 19(6): 3353-3365 (2022) - [c15]Morgan Ekmefjord, Addi Ait-Mlouk, Sadi Alawadi, Mattias Åkesson, Prashant Singh, Ola Spjuth, Salman Toor, Andreas Hellander:
Scalable federated machine learning with FEDn. CCGRID 2022: 555-564 - [c14]Fredrik Wrede, Robin Eriksson, Richard M. Jiang, Linda R. Petzold, Stefan Engblom, Andreas Hellander, Prashant Singh:
Robust and integrative Bayesian neural networks for likelihood-free parameter inference. IJCNN 2022: 1-10 - [i13]Tianru Zhang, Salman Toor, Andreas Hellander:
Efficient Hierarchical Storage Management Framework Empowered by Reinforcement Learning. CoRR abs/2201.11668 (2022) - [i12]Addi Ait-Mlouk, Sadi Alawadi, Salman Toor, Andreas Hellander:
FedQAS: Privacy-aware machine reading comprehension with federated learning. CoRR abs/2202.04742 (2022) - 2021
- [j19]Prashant Singh, Fredrik Wrede, Andreas Hellander:
Scalable machine learning-assisted model exploration and inference using Sciope. Bioinform. 37(2): 279-281 (2021) - [j18]Richard M. Jiang, Bruno Jacob, Matthew Geiger, Sean Matthew, Bryan Rumsey, Prashant Singh, Fredrik Wrede, Tau-Mu Yi, Brian Drawert, Andreas Hellander, Linda R. Petzold:
Epidemiological modeling in StochSS Live! Bioinform. 37(17): 2787-2788 (2021) - [j17]Richard M. Jiang, Fredrik Wrede, Prashant Singh, Andreas Hellander, Linda R. Petzold:
Accelerated regression-based summary statistics for discrete stochastic systems via approximate simulators. BMC Bioinform. 22(1): 339 (2021) - [i11]Fredrik Wrede, Robin Eriksson, Richard M. Jiang, Linda R. Petzold, Stefan Engblom, Andreas Hellander, Prashant Singh:
Robust and integrative Bayesian neural networks for likelihood-free parameter inference. CoRR abs/2102.06521 (2021) - [i10]Morgan Ekmefjord, Addi Ait-Mlouk, Sadi Alawadi, Mattias Åkesson, Desislava Stoyanova, Ola Spjuth, Salman Toor, Andreas Hellander:
Scalable federated machine learning with FEDn. CoRR abs/2103.00148 (2021) - [i9]Ola Spjuth, Marco Capuccini, Matteo Carone, Anders Larsson, Wesley Schaal, Jon Ander Novella, Oliver Stein, Morgan Ekmefjord, Paolo Di Tommaso, Evan W. Floden, Cédric Notredame, Pablo A. Moreno, Andreas Hellander, Payam Emami Khoonsari, Stephanie Herman, Kim Kultima, Samuel Lampa:
Approaches for containerized scientific workflows in cloud environments with applications in life science. F1000Research 10: 513 (2021) - 2020
- [c13]Oliver Stein, Ben Blamey, Johan Karlsson, Alan Sabirsh, Ola Spjuth, Andreas Hellander, Salman Toor:
Smart Resource Management for Data Streaming using an Online Bin-packing Strategy. IEEE BigData 2020: 2207-2216 - [i8]Oliver Stein, Ben Blamey, Johan Karlsson, Alan Sabirsh, Ola Spjuth, Andreas Hellander, Salman Toor:
Smart Resource Management for Data Streaming using an Online Bin-packing Strategy. CoRR abs/2001.10865 (2020) - [i7]Mattias Åkesson, Prashant Singh, Fredrik Wrede, Andreas Hellander:
Convolutional Neural Networks as Summary Statistics for Approximate Bayesian Computation. CoRR abs/2001.11760 (2020)
2010 – 2019
- 2019
- [j16]Fredrik Wrede, Andreas Hellander:
Smart computational exploration of stochastic gene regulatory network models using human-in-the-loop semi-supervised learning. Bioinform. 35(24): 5199-5206 (2019) - [c12]Ben Blamey, Andreas Hellander, Salman Toor:
Apache Spark Streaming, Kafka and HarmonicIO: A Performance Benchmark and Architecture Comparison for Enterprise and Scientific Computing. Bench 2019: 335-347 - [c11]Ben Blamey, Fredrik Wrede, Johan Karlsson, Andreas Hellander, Salman Toor:
Adapting the Secretary Hiring Problem for Optimal Hot-Cold Tier Placement Under Top-K Workloads. CCGRID 2019: 576-583 - [i6]Ben Blamey, Fredrik Wrede, Johan Karlsson, Andreas Hellander, Salman Toor:
Adapting The Secretary Hiring Problem for Optimal Hot-Cold Tier Placement under Top-K Workloads. CoRR abs/1901.07335 (2019) - [i5]Ben Blamey, Ida-Maria Sintorn, Andreas Hellander, Salman Toor:
Resource- and Message Size-Aware Scheduling of Stream Processing at the Edge with application to Realtime Microscopy. CoRR abs/1912.09088 (2019) - 2018
- [j15]Kristiina Ausmees, Aji John, Salman Zubair Toor, Andreas Hellander, Carl Nettelblad:
BAMSI: a multi-cloud service for scalable distributed filtering of massive genome data. BMC Bioinform. 19(1): 240:1-240:11 (2018) - [c10]Preechakorn Torruangwatthana, Håkan Wieslander, Ben Blamey, Andreas Hellander, Salman Zubair Toor:
HarmonicIO: Scalable Data Stream Processing for Scientific Datasets. IEEE CLOUD 2018: 879-882 - [c9]Adrien Coulier, Andreas Hellander:
Orchestral: A Lightweight Framework for Parallel Simulations of Cell-Cell Communication. eScience 2018: 168-176 - [c8]Prashant Singh, Andreas Hellander:
Hyperparameter Optimization for Approximate Bayesian Computation. WSC 2018: 1718-1729 - [i4]Prashant Singh, Andreas Hellander:
Multi-Statistic Approximate Bayesian Computation with Multi-Armed Bandits. CoRR abs/1805.08647 (2018) - [i3]Ben Blamey, Andreas Hellander, Salman Zubair Toor:
Apache Spark Streaming and HarmonicIO: A Performance and Architecture Comparison. CoRR abs/1807.07724 (2018) - 2017
- [j14]Andreas Hellander, Jan Klosa, Per Lötstedt, Shev MacNamara:
Robustness Analysis of Spatiotemporal Models in the Presence of Extrinsic Fluctuations. SIAM J. Appl. Math. 77(4): 1157-1183 (2017) - [c7]Alieu Jallow, Andreas Hellander, Salman Zubair Toor:
Cost-aware Application Development and Management using CLOUD-METRIC. CLOSER 2017: 487-494 - [c6]Salman Zubair Toor, Mathias Lindberg, Ingemar Falman, Andreas Vallin, Olof Mohill, Pontus Freyhult, Linus Nilsson, Martin Agback, Lars Viklund, Henric Zazzik, Ola Spjuth, Marco Capuccini, Joakim Moller, Donal Murtagh, Andreas Hellander:
SNIC Science Cloud (SSC): A National-Scale Cloud Infrastructure for Swedish Academia. eScience 2017: 219-227 - [c5]Prashant Singh, Andreas Hellander:
Surrogate assisted model reduction for stochastic biochemical reaction networks. WSC 2017: 1773-1783 - 2016
- [j13]Emilie Blanc, Stefan Engblom, Andreas Hellander, Per Lötstedt:
Mesoscopic Modeling of Stochastic Reaction-Diffusion Kinetics in the Subdiffusive Regime. Multiscale Model. Simul. 14(2): 668-707 (2016) - [j12]Brian Drawert, Andreas Hellander, Benjamin B. Bales, Debjani Banerjee, Giovanni Bellesia, Bernie J. Daigle Jr., Geoffrey Douglas, Mengyuan Gu, Anand Gupta, Stefan Hellander, Christopher B. Horuk, Dibyendu Nath, Aviral Takkar, Sheng Wu, Per Lötstedt, Chandra Krintz, Linda R. Petzold:
Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist. PLoS Comput. Biol. 12(12) (2016) - [j11]Lina Meinecke, Stefan Engblom, Andreas Hellander, Per Lötstedt:
Analysis and Design of Jump Coefficients in Discrete Stochastic Diffusion Models. SIAM J. Sci. Comput. 38(1) (2016) - [j10]Brian Drawert, Michael Trogdon, Salman Zubair Toor, Linda R. Petzold, Andreas Hellander:
MOLNs: A Cloud Platform for Interactive, Reproducible, and Scalable Spatial Stochastic Computational Experiments in Systems Biology Using PyURDME. SIAM J. Sci. Comput. 38(3) (2016) - 2015
- [i2]Brian Drawert, Michael Trogdon, Salman Zubair Toor, Linda R. Petzold, Andreas Hellander:
MOLNs: A cloud platform for interactive, reproducible and scalable spatial stochastic computational experiments in systems biology using PyURDME. CoRR abs/1508.03604 (2015) - 2014
- [j9]Andreas Hellander, Michael J. Lawson, Brian Drawert, Linda R. Petzold:
Local error estimates for adaptive simulation of the reaction-diffusion master equation via operator splitting. J. Comput. Phys. 266: 89-100 (2014) - [c4]Christopher B. Horuk, Geoffrey Douglas, Anand Gupta, Chandra Krintz, Benjamin B. Bales, Giovanni Bellesia, Brian Drawert, Rich Wolski, Linda R. Petzold, Andreas Hellander:
Automatic and portable cloud deployment for scientific simulations. HPCS 2014: 374-381 - 2013
- [c3]Andrej Andrejev, Salman Zubair Toor, Andreas Hellander, Sverker Holmgren, Tore Risch:
Scientific Analysis by Queries in Extended SPARQL over a Scalable e-Science Data Store. e-Science 2013: 98-106 - [i1]Andreas Hellander, Michael J. Lawson, Brian Drawert, Linda R. Petzold:
Local error estimates for adaptive simulation of the Reaction-Diffusion Master Equation via operator splitting. CoRR abs/1305.3639 (2013) - 2012
- [j8]Brian Drawert, Stefan Engblom, Andreas Hellander:
URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries. BMC Syst. Biol. 6: 76 (2012) - [j7]Andreas Hellander, Stefan Hellander, Per Lötstedt:
Coupled Mesoscopic and Microscopic Simulation of Stochastic Reaction-Diffusion Processes in Mixed Dimensions. Multiscale Model. Simul. 10(2): 585-611 (2012) - [c2]Per-Olov Östberg, Andreas Hellander, Brian Drawert, Erik Elmroth, Sverker Holmgren, Linda R. Petzold:
Abstractions for Scaling eScience Applications to Distributed Computing Environments - A StratUm Integration Case Study in Molecular Systems Biology. BIOINFORMATICS 2012: 290-294 - [c1]Per-Olov Östberg, Andreas Hellander, Brian Drawert, Erik Elmroth, Sverker Holmgren, Linda R. Petzold:
Reducing Complexity in Management of eScience Computations. CCGRID 2012: 845-852 - 2010
- [j6]Emmet Caulfield, Andreas Hellander:
CellMC - a multiplatform model compiler for the Cell Broadband Engine and x86. Bioinform. 26(3): 426-428 (2010) - [j5]Lars Ferm, Andreas Hellander, Per Lötstedt:
An adaptive algorithm for simulation of stochastic reaction-diffusion processes. J. Comput. Phys. 229(2): 343-360 (2010) - [j4]Andreas Hellander, Per Lötstedt:
Incorporating Active Transport of Cellular Cargo in Stochastic Mesoscopic Models of Living Cells. Multiscale Model. Simul. 8(5): 1691-1714 (2010)
2000 – 2009
- 2009
- [j3]Stefan Engblom, Lars Ferm, Andreas Hellander, Per Lötstedt:
Simulation of Stochastic Reaction-Diffusion Processes on Unstructured Meshes. SIAM J. Sci. Comput. 31(3): 1774-1797 (2009) - 2008
- [j2]Lars Ferm, Per Lötstedt, Andreas Hellander:
A Hierarchy of Approximations of the Master Equation Scaled by a Size Parameter. J. Sci. Comput. 34(2): 127-151 (2008) - 2007
- [j1]Andreas Hellander, Per Lötstedt:
Hybrid method for the chemical master equation. J. Comput. Phys. 227(1): 100-122 (2007)
Coauthor Index
aka: Salman Toor
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