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Ana Tereza Ribeiro de Vasconcelos
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2020 – today
- 2023
- [j25]Rafael Mina Piergiorge, Ronaldo da Silva Francisco Junior, Ana Tereza Ribeiro de Vasconcelos, Cíntia Barros Santos-Rebouças:
Multi-layered transcriptomic analysis reveals a pivotal role of FMR1 and other developmental genes in Alzheimer's disease-associated brain ceRNA network. Comput. Biol. Medicine 166: 107494 (2023) - 2022
- [j24]Wentai Ma, Jing Yang, Haoyi Fu, Chao Su, Caixia Yu, Qihui Wang, Ana Tereza Ribeiro de Vasconcelos, Georgii A. Bazykin, Yiming Bao, Mingkun Li:
Genomic Perspectives on the Emerging SARS-CoV-2 Omicron Variant. Genom. Proteom. Bioinform. 20(1): 60-69 (2022) - 2021
- [j23]Yasmmin Cortes Martins, Artur Ziviani, Marisa Fabiana Nicolás, Ana Tereza Ribeiro de Vasconcelos:
Large-Scale Protein Interactions Prediction by Multiple Evidence Analysis Associated With an In-Silico Curation Strategy. Frontiers Bioinform. 1 (2021) - [j22]Felipe Dalvi-Garcia, Luís L. Fonseca, Ana Tereza Ribeiro de Vasconcelos, Cecilia Hedin-Pereira, Eberhard O. Voit:
A model of dopamine and serotonin-kynurenine metabolism in cortisolemia: Implications for depression. PLoS Comput. Biol. 17(5) (2021) - 2020
- [j21]Fabio Ribeiro Cerqueira, Ana Tereza Ribeiro de Vasconcelos:
OCCAM: prediction of small ORFs in bacterial genomes by means of a target-decoy database approach and machine learning techniques. Database J. Biol. Databases Curation 2020 (2020) - [j20]Kary A. C. S. Ocaña, Marcelo Galheigo, Carla Osthoff, Luiz M. R. Gadelha Jr., Fábio Porto, Antônio Tadeu A. Gomes, Daniel de Oliveira, Ana Tereza Ribeiro de Vasconcelos:
BioinfoPortal: A scientific gateway for integrating bioinformatics applications on the Brazilian national high-performance computing network. Future Gener. Comput. Syst. 107: 192-214 (2020)
2010 – 2019
- 2019
- [c5]Kary Ann del Carmen Ocaña Gautherot, Marcelo Galheigo, Carla Osthoff, Luiz M. R. Gadelha Jr., Antônio Tadeu A. Gomes, Daniel de Oliveira, Fábio Porto, Ana Tereza Ribeiro de Vasconcelos:
Towards a Science Gateway for Bioinformatics: Experiences in the Brazilian System of High Performance Computing. CCGRID 2019: 638-647 - [c4]Yasmmin Cortes Martins, Maria Cláudia Cavalcanti, Luis Willian Pacheco Arge, Artur Ziviani, Ana Tereza Ribeiro de Vasconcelos:
OntoPPI: Towards Data Formalization on the Prediction of Protein Interactions. MTSR 2019: 260-271 - 2018
- [i1]Maria Luiza Mondelli, Thiago Magalhães, Guilherme Loss, Michael Wilde, Ian T. Foster, Marta Mattoso, Daniel S. Katz, Helio J. C. Barbosa, Ana Tereza Ribeiro de Vasconcelos, Kary A. C. S. Ocaña, Luiz M. R. Gadelha Jr.:
BioWorkbench: A High-Performance Framework for Managing and Analyzing Bioinformatics Experiments. CoRR abs/1801.03915 (2018) - 2017
- [j19]Yuri Bento Marques, Alcione de Paiva Oliveira, Ana Tereza Ribeiro de Vasconcelos, Fabio Ribeiro Cerqueira:
Erratum to: Mirnacle: machine learning with SMOTE and random forest for improving selectivity in pre-miRNA ab initio prediction. BMC Bioinform. 18(1): 113:1 (2017) - 2016
- [j18]Yuri Bento Marques, Alcione de Paiva Oliveira, Ana Tereza Ribeiro de Vasconcelos, Fabio Ribeiro Cerqueira:
Mirnacle: machine learning with SMOTE and random forest for improving selectivity in pre-miRNA ab initio prediction. BMC Bioinform. 17(S-18): 53-63 (2016) - 2015
- [j17]Jorge S. Oliveira, Wydemberg Araújo, Ana Isabela Lopes Sales, Alaine de Brito Guerra, Sinara Carla da Silva Araújo, Ana Tereza Ribeiro de Vasconcelos, Lucymara F. Agnez-Lima, Ana Teresa Freitas:
BioSurfDB: knowledge and algorithms to support biosurfactants and biodegradation studies. Database J. Biol. Databases Curation 2015 (2015) - 2014
- [j16]Daiane C. F. Golbert, Eliane Santana-van-Vliet, Alex S. Mundstein, Vicente Calfo, Wilson Savino, Ana T. R. de Vasconcelos:
Laminin-database v.2.0: an update on laminins in health and neuromuscular disorders. Nucleic Acids Res. 42(Database-Issue): 426-429 (2014) - 2011
- [j15]Daiane C. F. Golbert, Leandra Linhares-Lacerda, Luiz Gonzaga Almeida, Eliane Correa-de-Santana, Alice R. de Oliveira, Alex S. Mundstein, Wilson Savino, Ana T. R. de Vasconcelos:
Laminin database: a tool to retrieve high-throughput and curated data for studies on laminins. Nucleic Acids Res. 39(Database-Issue): 320-323 (2011) - 2010
- [j14]Miria C. Correa, Helena F. Deus, Ana Tereza Ribeiro de Vasconcelos, Yuki Hayashi, Jaffer A. Ajani, Srikrishna V. Patnana, Jonas S. Almeida:
AGUIA: autonomous graphical user interface assembly for clinical trials semantic data services. BMC Medical Informatics Decis. Mak. 10: 65 (2010)
2000 – 2009
- 2009
- [j13]Janet Piñero González, Olimpia Carrillo Farnés, Ana Tereza Ribeiro de Vasconcelos, Abel González Pérez:
Conservation of key members in the course of the evolution of the insulin signaling pathway. Biosyst. 95(1): 7-16 (2009) - [j12]Diogo F. Veiga, Helena F. Deus, Caner Akdemir, Ana Tereza Ribeiro de Vasconcelos, Jonas S. Almeida:
DASMiner: discovering and integrating data from DAS sources. BMC Syst. Biol. 3: 109 (2009) - [j11]Luiz Gonzaga Almeida, Noboru J. Sakabe, Alice R. de Oliveira, Maria Cristina C. Silva, Alex S. Mundstein, Tzeela Cohen, Yao-Tseng Chen, Ramon Chua, Sita Gurung, Sacha Gnjatic, Achim A. Jungbluth, Otavia L. Caballero, Amos Bairoch, Eva Kiesler, Sarah L. White, Andrew J. G. Simpson, Lloyd J. Old, Anamaria A. Camargo, Ana Tereza Ribeiro de Vasconcelos:
CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens. Nucleic Acids Res. 37(Database-Issue): 816-819 (2009) - [p1]Luiz G. P. Almeida, Ana Tereza Ribeiro de Vasconcelos, Marco A. G. Maia:
A Simple and Fast Term Selection Procedure for Text Clustering. Intelligent Text Categorization and Clustering 2009: 47-64 - 2008
- [j10]Vladimir Espinosa Angarica, Abel González Pérez, Ana Tereza Ribeiro de Vasconcelos, Julio Collado-Vides, Bruno Contreras-Moreira:
Prediction of TF target sites based on atomistic models of protein-DNA complexes. BMC Bioinform. 9 (2008) - [j9]Juliana S. Bernardes, Jorge H. Fernandez, Ana Tereza Ribeiro de Vasconcelos:
Structural descriptor database: a new tool for sequence-based functional site prediction. BMC Bioinform. 9 (2008) - [j8]Marco Vilela, I-Chun Chou, Susana Vinga, Ana Tereza Ribeiro de Vasconcelos, Eberhard O. Voit, Jonas S. Almeida:
Parameter optimization in S-system models. BMC Syst. Biol. 2: 35 (2008) - [c3]Maria Fernanda B. Wanderley, João C. P. da Silva, Carlos Cristiano H. Borges, Ana Tereza Ribeiro de Vasconcelos:
Application of Genetic Algorithms to the Genetic Regulation Problem. BSB 2008: 140-151 - 2007
- [j7]Marco Vilela, Carlos Cristiano H. Borges, Susana Vinga, Ana Tereza Ribeiro de Vasconcelos, Helena Santos, Eberhard O. Voit, Jonas S. Almeida:
Automated smoother for the numerical decoupling of dynamics models. BMC Bioinform. 8 (2007) - [j6]Abel González Pérez, Vladimir Espinosa Angarica, Ana Tereza Ribeiro de Vasconcelos, Julio Collado-Vides:
Tractor_DB (version 2.0): a database of regulatory interactions in gamma-proteobacterial genomes. Nucleic Acids Res. 35(Database-Issue): 132-136 (2007) - 2005
- [j5]Ana Tereza Ribeiro de Vasconcelos, Ana Carolina R. Guimarães, Carlos Henrique M. Castelletti, Célia S. Caruso, Cristina Ribeiro, Fabiano Yokaichiya, Geraldo R. G. Armôa, Gislaine da Silva P. Pereira, Israel T. da Silva, Carlos G. Schrago, Adélia L. V. Fernandes, Aline R. da Silveira, André G. Carneiro, Bruno M. Carvalho, Carlos Juliano M. Viana, Daniel Gramkow, Franklin J. Lima, Luiz G. G. Corrêa, Maurício de Alvarenga Mudado, Pablo Nehab-Hess, Rangel de Souza, Régis L. Corrêa, Claudia A. M. Russo:
MamMiBase: a mitochondrial genome database for mammalian phylogenetic studies. Bioinform. 21(10): 2566-2567 (2005) - [j4]Abel D. González, Vladimir Espinosa Angarica, Ana Tereza Ribeiro de Vasconcelos, Ernesto Pérez-Rueda, Julio Collado-Vides:
TRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomes. Nucleic Acids Res. 33(Database-Issue): 98-102 (2005) - [r1]Denise Fukumi Tsunoda, Heitor Silvério Lopes, Ana Tereza Ribeiro de Vasconcelos:
Web Tools for Molecular Biological Data Analysis. Encyclopedia of Information Science and Technology (V) 2005: 3068-3073 - 2004
- [j3]Luiz G. P. Almeida, Roger F. C. Paixão, Rangel C. Souza, Gisele C. da Costa, Frank J. A. Barrientos, Marcelo Trindade dos Santos, Darcy F. de Almeida, Ana Tereza Ribeiro de Vasconcelos:
A System for Automated Bacterial (genome) Integrated Annotation - SABIA. Bioinform. 20(16): 2832-2833 (2004) - [j2]Marylens Hernández Guía, Abel González Pérez, Vladimir Espinosa Angarica, Ana Tereza Ribeiro de Vasconcelos, Julio Collado-Vides:
Complementing computationally predicted regulatory sites in Tractor_DB using a pattern matching approach. Silico Biol. 5(2): 209-219 (2004) - 2003
- [c2]Carlos Azevedo, Alexandre Plastino, Ana Tereza Ribeiro de Vasconcelos:
Procsimo: uma Ferramenta de Procura de Similaridade entre Operons. WOB 2003: 117-120 - 2001
- [c1]Ana Tereza Ribeiro de Vasconcelos, L. Gonzaga, Rangel C. Souza, D. Q. Mendes, Roger F. C. Paixão, R. Kersanach, M. Oliveira, S. M. Martins, Andrew J. G. Simpson:
A Tool for Automatic Genome Annotation. German Conference on Bioinformatics 2001: 231-232 - 2000
- [j1]Ana Tereza Ribeiro de Vasconcelos, Marco A. Grivet Mattoso Maia, Darcy F. de Almeida:
Short interrupted palindromes on the extragenic DNA of Escherichia coli K-12, Haemophilus influenzae and Neisseria meningitidis. Bioinform. 16(11): 968-977 (2000)
Coauthor Index
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