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ORCIDGonzalo Navarro
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- affiliation: University of Chile, Santiago, Chile
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2020 – today
- 2023
[j199]José Fuentes-Sepúlveda, Gonzalo Navarro
, Diego Seco:
Navigating planar topologies in near-optimal space and time. Comput. Geom. 109: 101922 (2023)- [j198]José Fuentes-Sepúlveda, Diego Gatica, Gonzalo Navarro, M. Andrea Rodríguez, Diego Seco:
Compact representations of spatial hierarchical structures with support for topological queries. Inf. Comput. 292: 105029 (2023) - [j197]Diego Díaz-Domínguez, Gonzalo Navarro:
Efficient construction of the BWT for repetitive text using string compression. Inf. Comput. 294: 105088 (2023) - [j196]Guillermo de Bernardo, Travis Gagie, Susana Ladra, Gonzalo Navarro, Diego Seco:
Faster compressed quadtrees. J. Comput. Syst. Sci. 131: 86-104 (2023) - [j195]Tomasz Kociumaka, Gonzalo Navarro, Nicola Prezza:
Toward a Definitive Compressibility Measure for Repetitive Sequences. IEEE Trans. Inf. Theory 69(4): 2074-2092 (2023) - [j194]Nieves R. Brisaboa, Ana Cerdeira-Pena, Guillermo de Bernardo, Antonio Fariña, Gonzalo Navarro:
Space/time-efficient RDF stores based on circular suffix sorting. J. Supercomput. 79(5): 5643-5683 (2023) - [c276]Gonzalo Navarro:
Computing MEMs on Repetitive Text Collections. CPM 2023: 24:1-24:17 - [c275]Gonzalo Navarro, Cristian Urbina:
L-Systems for Measuring Repetitiveness. CPM 2023: 25:1-25:17 - [c274]Gonzalo Navarro:
Compact Data Structures Meet Databases (Invited Talk). ICDT 2023: 2:1-2:16 - [c273]Diego Arroyuelo, Adrián Gómez-Brandón, Gonzalo Navarro:
Evaluating Regular Path Queries on Compressed Adjacency Matrices. SPIRE 2023: 35-48 - [c272]Travis Gagie, Sana Kashgouli, Gonzalo Navarro:
A Simple Grammar-Based Index for Finding Approximately Longest Common Substrings. SPIRE 2023: 246-252 - [c271]Zsuzsanna Lipták, Francesco Masillo, Gonzalo Navarro, Aaron Williams:
Constant Time and Space Updates for the Sigma-Tau Problem. SPIRE 2023: 323-330 - [e10]Gonzalo Navarro, Julian Shun:
Proceedings of the Symposium on Algorithm Engineering and Experiments, ALENEX 2023, Florence, Italy, January 22-23, 2023. SIAM 2023, ISBN 978-1-61197-756-1 [contents] - [i119]Zsuzsanna Lipták, Francesco Masillo, Gonzalo Navarro:
Maintaining the cycle structure of dynamic permutations. CoRR abs/2306.04470 (2023) - [i118]Diego Arroyuelo, Adrián Gómez-Brandón, Gonzalo Navarro:
Evaluating Regular Path Queries on Compressed Adjacency Matrices. CoRR abs/2307.14930 (2023) - [i117]Andrej Baláz, Travis Gagie, Adrián Goga, Simon Heumos, Gonzalo Navarro, Alessia Petescia, Jouni Sirén:
Wheeler maps. CoRR abs/2308.09836 (2023) - [i116]Luiz Fernando Afra Brito, Marcelo Keese Albertini, Bruno Augusto Nassif Travençolo, Gonzalo Navarro:
Dynamic Compact Data Structure for Temporal Reachability with Unsorted Contact Insertions. CoRR abs/2308.11734 (2023) - [i115]Adrián Goga, Lore Depuydt, Nathaniel K. Brown, Jan Fostier, Travis Gagie, Gonzalo Navarro:
Faster Maximal Exact Matches with Lazy LCP Evaluation. CoRR abs/2311.04538 (2023) - 2022
- [j193]Gonzalo Navarro:
The compression power of the BWT: technical perspective. Commun. ACM 65(6): 90 (2022) - [j192]Gonzalo Navarro:
Indexing Highly Repetitive String Collections, Part II: Compressed Indexes. ACM Comput. Surv. 54(2): 26:1-26:32 (2022) - [j191]Gonzalo Navarro:
Indexing Highly Repetitive String Collections, Part I: Repetitiveness Measures. ACM Comput. Surv. 54(2): 29:1-29:31 (2022) - [j190]Manuel Cáceres, Gonzalo Navarro:
Faster repetition-aware compressed suffix trees based on Block Trees. Inf. Comput. 285(Part): 104749 (2022) - [j189]Miguel E. Coimbra, Joana Hrotkó, Alexandre P. Francisco, Luís M. S. Russo, Guillermo de Bernardo, Susana Ladra, Gonzalo Navarro:
A practical succinct dynamic graph representation. Inf. Comput. 285(Part): 104862 (2022) - [j188]Daniel Saad Nogueira Nunes, Felipe A. Louza, Simon Gog, Mauricio Ayala-Rincón, Gonzalo Navarro:
Grammar Compression by Induced Suffix Sorting. ACM J. Exp. Algorithmics 27: 1.1:1-1.1:33 (2022) - [j187]Paolo Ferragina, Giovanni Manzini, Travis Gagie, Dominik Köppl, Gonzalo Navarro, Manuel Striani, Francesco Tosoni:
Improving Matrix-vector Multiplication via Lossless Grammar-Compressed Matrices. Proc. VLDB Endow. 15(10): 2175-2187 (2022) - [j186]Alexandre P. Francisco, Travis Gagie, Dominik Köppl, Susana Ladra, Gonzalo Navarro:
Graph Compression for Adjacency-Matrix Multiplication. SN Comput. Sci. 3(3): 193 (2022) - [j185]Alexandre P. Francisco, Travis Gagie, Dominik Köppl, Susana Ladra, Gonzalo Navarro:
Correction to: Graph Compression for Adjacency-Matrix Multiplication. SN Comput. Sci. 3(3): 228 (2022) - [j184]Antonio Fariña, Travis Gagie, Szymon Grabowski, Giovanni Manzini, Gonzalo Navarro, Alberto Ordóñez Pereira:
Efficient and compact representations of some non-canonical prefix-free codes. Theor. Comput. Sci. 907: 11-25 (2022) - [j183]Diego Arroyuelo, Gonzalo Navarro, Juan L. Reutter, Javiel Rojas-Ledesma:
Optimal Joins Using Compressed Quadtrees. ACM Trans. Database Syst. 47(2): 8:1-8:53 (2022) - [c270]Yuma Arakawa, Gonzalo Navarro, Kunihiko Sadakane:
Bi-Directional r-Indexes. CPM 2022: 11:1-11:14 - [c269]Diego Díaz-Domínguez, Gonzalo Navarro:
Efficient Construction of the BWT for Repetitive Text Using String Compression. CPM 2022: 29:1-29:18 - [c268]Dominik Köppl, Gonzalo Navarro, Nicola Prezza:
HOLZ: High-Order Entropy Encoding of Lempel-Ziv Factor Distances. DCC 2022: 83-92 - [c267]Diego Arroyuelo, Aidan Hogan, Gonzalo Navarro, Javiel Rojas-Ledesma:
Time- and Space-Efficient Regular Path Queries. ICDE 2022: 3091-3105 - [c266]Tomasz Kociumaka, Gonzalo Navarro, Francisco Olivares:
Near-Optimal Search Time in δ-Optimal Space. LATIN 2022: 88-103 - [c265]Gonzalo Navarro, Francisco Olivares, Cristian Urbina:
Balancing Run-Length Straight-Line Programs. SPIRE 2022: 117-131 - [e9]Shiri Chechik, Gonzalo Navarro, Eva Rotenberg, Grzegorz Herman:
30th Annual European Symposium on Algorithms, ESA 2022, September 5-9, 2022, Berlin/Potsdam, Germany. LIPIcs 244, Schloss Dagstuhl - Leibniz-Zentrum für Informatik 2022, ISBN 978-3-95977-247-1 [contents] - [d1]Diego Arroyuelo, Adrián Gómez-Brandón, Aidan Hogan, Gonzalo Navarro, Javiel Rojas-Ledesma:
Datasets of Time- and Space-Efficient Regular Path Queries. Zenodo, 2022
- [i114]Paolo Ferragina, Travis Gagie, Dominik Köppl, Giovanni Manzini, Gonzalo Navarro, Manuel Striani, Francesco Tosoni:
Improving Matrix-vector Multiplication via Lossless Grammar-Compressed Matrices. CoRR abs/2203.14540 (2022) - [i113]Diego Díaz-Domínguez, Gonzalo Navarro:
Efficient Construction of the BWT for Repetitive Text Using String Compression. CoRR abs/2204.05969 (2022) - [i112]Tomasz Kociumaka, Gonzalo Navarro, Francisco Olivares:
Near-Optimal Search Time in δ-Optimal Space. CoRR abs/2206.00781 (2022) - [i111]Gonzalo Navarro, Cristian Urbina:
L-systems for Measuring Repetitiveness. CoRR abs/2206.01688 (2022) - [i110]Gonzalo Navarro, Francisco Olivares, Cristian Urbina:
Balancing Run-Length Straight-Line Programs. CoRR abs/2206.13027 (2022) - [i109]Gonzalo Navarro:
Computing MEMs on Repetitive Text Collections. CoRR abs/2210.09914 (2022) - [i108]Travis Gagie, Artur Jez, Gonzalo Navarro:
Space-efficient conversions from SLPs. CoRR abs/2212.02327 (2022) - 2021
- [j182]Djamal Belazzougui, Travis Gagie, J. Ian Munro, Gonzalo Navarro, Yakov Nekrich:
Range Majorities and Minorities in Arrays. Algorithmica 83(6): 1707-1733 (2021) - [j181]Gonzalo Navarro, Javiel Rojas-Ledesma:
Predecessor Search. ACM Comput. Surv. 53(5): 105:1-105:35 (2021) - [j180]Nieves R. Brisaboa, Travis Gagie, Adrián Gómez-Brandón, Gonzalo Navarro, José R. Paramá:
An index for moving objects with constant-time access to their compressed trajectories. Int. J. Geogr. Inf. Sci. 35(7): 1392-1424 (2021) - [j179]Felipe Glaria, Cecilia Hernández, Susana Ladra, Gonzalo Navarro, Lilian Salinas:
Compact structure for sparse undirected graphs based on a clique graph partition. Inf. Sci. 544: 485-499 (2021) - [j178]Djamal Belazzougui, Manuel Cáceres, Travis Gagie, Pawel Gawrychowski, Juha Kärkkäinen, Gonzalo Navarro, Alberto Ordóñez Pereira, Simon J. Puglisi, Yasuo Tabei:
Block trees. J. Comput. Syst. Sci. 117: 1-22 (2021) - [j177]Francisco Claude, Gonzalo Navarro, Alejandro Pacheco:
Grammar-compressed indexes with logarithmic search time. J. Comput. Syst. Sci. 118: 53-74 (2021) - [j176]Diego Arroyuelo, Rodrigo Cánovas, Johannes Fischer, Dominik Köppl, Marvin Löbel, Gonzalo Navarro, Rajeev Raman:
Engineering Practical Lempel-Ziv Tries. ACM J. Exp. Algorithmics 26: 14:1-14:47 (2021) - [j175]Anders Roy Christiansen, Mikko Berggren Ettienne, Tomasz Kociumaka, Gonzalo Navarro, Nicola Prezza:
Optimal-Time Dictionary-Compressed Indexes. ACM Trans. Algorithms 17(1): 8:1-8:39 (2021) - [j174]Gonzalo Navarro, Carlos Ochoa, Nicola Prezza:
On the Approximation Ratio of Ordered Parsings. IEEE Trans. Inf. Theory 67(2): 1008-1026 (2021) - [c264]Christina Boucher, Ondrej Cvacho, Travis Gagie, Jan Holub, Giovanni Manzini, Gonzalo Navarro, Massimiliano Rossi:
PFP Compressed Suffix Trees. ALENEX 2021: 60-72 - [c263]Dustin Cobas, Travis Gagie, Gonzalo Navarro:
A Fast and Small Subsampled R-Index. CPM 2021: 13:1-13:16 - [c262]Diego Díaz-Domínguez, Gonzalo Navarro:
A grammar compressor for collections of reads with applications to the construction of the BWT. DCC 2021: 83-92 - [c261]José Fuentes-Sepúlveda, Diego Gatica, Gonzalo Navarro, M. Andrea Rodríguez, Diego Seco:
Compact Representation of Spatial Hierarchies and Topological Relationships. DCC 2021: 113-122 - [c260]Christina Boucher, Travis Gagie, Tomohiro I, Dominik Köppl, Ben Langmead, Giovanni Manzini, Gonzalo Navarro, Alejandro Pacheco, Massimiliano Rossi:
PHONI: Streamed Matching Statistics with Multi-Genome References. DCC 2021: 193-202 - [c259]Daniela Campos, Adrián Gómez-Brandón, Gonzalo Navarro:
A Disk-Based Index for Trajectories with an In-Memory Compressed Cache. DCC 2021: 340 - [c258]Diego Arroyuelo, Aidan Hogan, Gonzalo Navarro, Juan L. Reutter, Javiel Rojas-Ledesma, Adrián Soto:
Worst-Case Optimal Graph Joins in Almost No Space. SIGMOD Conference 2021: 102-114 - [c257]Diego Díaz-Domínguez, Gonzalo Navarro, Alejandro Pacheco:
An LMS-Based Grammar Self-index with Local Consistency Properties. SPIRE 2021: 100-113 - [c256]Gonzalo Navarro, Cristian Urbina:
On Stricter Reachable Repetitiveness Measures. SPIRE 2021: 193-206 - [i107]Diego Díaz-Domínguez, Gonzalo Navarro:
Efficient construction of the extended BWT from grammar-compressed DNA sequencing reads. CoRR abs/2102.03961 (2021) - [i106]Dustin Cobas, Travis Gagie, Gonzalo Navarro:
A Fast and Small Subsampled R-index. CoRR abs/2103.15329 (2021) - [i105]Gonzalo Navarro, Cristian Urbina:
On Stricter Reachable Repetitiveness Measures. CoRR abs/2105.13595 (2021) - [i104]Domagoj Vrgoc, Carlos Rojas, Renzo Angles, Marcelo Arenas, Diego Arroyuelo, Carlos Buil Aranda, Aidan Hogan, Gonzalo Navarro, Cristian Riveros, Juan Romero:
MillenniumDB: A Persistent, Open-Source, Graph Database. CoRR abs/2111.01540 (2021) - [i103]Dominik Köppl, Gonzalo Navarro, Nicola Prezza:
HOLZ: High-Order Entropy Encoding of Lempel-Ziv Factor Distances. CoRR abs/2111.02478 (2021) - [i102]Diego Arroyuelo, Aidan Hogan, Gonzalo Navarro, Javiel Rojas-Ledesma:
Time- and Space-Efficient Regular Path Queries on Graphs. CoRR abs/2111.04556 (2021) - 2020
- [j173]J. Ian Munro, Gonzalo Navarro, Yakov Nekrich:
Fast Compressed Self-indexes with Deterministic Linear-Time Construction. Algorithmica 82(2): 316-337 (2020) - [j172]Travis Gagie, Meng He, Gonzalo Navarro:
Compressed Dynamic Range Majority and Minority Data Structures. Algorithmica 82(7): 2063-2086 (2020) - [j171]Dmitry Kosolobov, Daniel Valenzuela, Gonzalo Navarro, Simon J. Puglisi:
Lempel-Ziv-Like Parsing in Small Space. Algorithmica 82(11): 3195-3215 (2020) - [j170]Virgílio A. F. Almeida, Gonzalo Navarro, Sergio Rajsbaum:
Welcome. Commun. ACM 63(11): 42-44 (2020) - [j169]Leo Ferres, José Fuentes-Sepúlveda, Travis Gagie, Meng He, Gonzalo Navarro:
Fast and compact planar embeddings. Comput. Geom. 89: 101630 (2020) - [j168]Travis Gagie, Gonzalo Navarro:
Computation over compressed data. Inf. Comput. 273: 104515 (2020) - [j167]Nieves R. Brisaboa, Ana Cerdeira-Pena, Guillermo de Bernardo, Gonzalo Navarro, Oscar Pedreira:
Extending general compact querieable representations to GIS applications. Inf. Sci. 506: 196-216 (2020) - [j166]Travis Gagie, Gonzalo Navarro, Nicola Prezza:
Fully Functional Suffix Trees and Optimal Text Searching in BWT-Runs Bounded Space. J. ACM 67(1): 2:1-2:54 (2020) - [j165]José Fuentes-Sepúlveda, Gonzalo Navarro, Yakov Nekrich:
Parallel computation of the Burrows Wheeler Transform in compact space. Theor. Comput. Sci. 812: 123-136 (2020) - [j164]J. Ian Munro, Gonzalo Navarro, Rahul Shah, Sharma V. Thankachan:
Ranked document selection. Theor. Comput. Sci. 812: 149-159 (2020) - [j163]Travis Gagie, Meng He, Gonzalo Navarro, Carlos Ochoa:
Tree path majority data structures. Theor. Comput. Sci. 833: 107-119 (2020) - [c255]Nieves R. Brisaboa, Ana Cerdeira-Pena, Guillermo de Bernardo, Gonzalo Navarro:
Improved Compressed String Dictionaries. CIRCLE 2020 - [c254]Antonio Fariña, Miguel A. Martínez-Prieto, Francisco Claude, Gonzalo Navarro, Juan J. Lastra-Díaz, Nicola Prezza, Diego Seco:
On the Reproducibility of Experiments of Indexing Repetitive Document Collections. CIRCLE 2020 - [c253]J. Ian Munro, Gonzalo Navarro, Yakov Nekrich:
Text Indexing and Searching in Sublinear Time. CPM 2020: 24:1-24:15 - [c252]Nieves Rodríguez Brisaboa, Antonio Fariña, Gonzalo Navarro, Tirso Varela Rodeiro:
Semantrix: A Compressed Semantic Matrix. DCC 2020: 113-122 - [c251]Luís M. S. Russo, Ana Sofia D. Correia, Gonzalo Navarro, Alexandre P. Francisco:
Approximating Optimal Bidirectional Macro Schemes. DCC 2020: 153-162 - [c250]Miguel E. Coimbra, Alexandre P. Francisco, Luís M. S. Russo, Guillermo de Bernardo, Susana Ladra, Gonzalo Navarro:
On Dynamic Succinct Graph Representations. DCC 2020: 213-222 - [c249]Gonzalo Navarro, Juan L. Reutter, Javiel Rojas-Ledesma:
Optimal Joins Using Compact Data Structures. ICDT 2020: 21:1-21:21 - [c248]Tomasz Kociumaka, Gonzalo Navarro, Nicola Prezza:
Towards a Definitive Measure of Repetitiveness. LATIN 2020: 207-219 - [c247]Gonzalo Navarro:
Contextual Pattern Matching. SPIRE 2020: 3-10 - [c246]Travis Gagie, Tomohiro I, Giovanni Manzini, Gonzalo Navarro, Hiroshi Sakamoto, Louisa Seelbach Benkner, Yoshimasa Takabatake:
Practical Random Access to SLP-Compressed Texts. SPIRE 2020: 221-231 - [i101]Daniel Inostroza, Cecilia Hernández, Diego Seco, Gonzalo Navarro, Alvaro Olivera-Nappa:
Cell cycle and protein complex dynamics in discovering signaling pathways. CoRR abs/2002.11612 (2020) - [i100]Nieves R. Brisaboa, Antonio Fariña, Gonzalo Navarro, Tirso V. Rodeiro:
Semantrix: A Compressed Semantic Matrix. CoRR abs/2002.12050 (2020) - [i99]Luís M. S. Russo, Ana Sofia D. Correia, Gonzalo Navarro, Alexandre P. Francisco:
Approximating Optimal Bidirectional Macro Schemes. CoRR abs/2003.02336 (2020) - [i98]Francisco Claude, Gonzalo Navarro, Alejandro Pacheco:
Grammar-Compressed Indexes with Logarithmic Search Time. CoRR abs/2004.01032 (2020) - [i97]Gonzalo Navarro:
Indexing Highly Repetitive String Collections. CoRR abs/2004.02781 (2020) - [i96]Christina Boucher, Ondrej Cvacho, Travis Gagie, Jan Holub, Giovanni Manzini, Gonzalo Navarro, Massimiliano Rossi:
PFP Data Structures. CoRR abs/2006.11687 (2020) - [i95]Nieves R. Brisaboa, Ana Cerdeira-Pena, Guillermo de Bernardo, Antonio Fariña, Gonzalo Navarro:
Space/time-efficient RDF stores based on circular suffix sorting. CoRR abs/2009.10045 (2020) - [i94]Gonzalo Navarro:
Contextual Pattern Matching. CoRR abs/2010.07076 (2020) - [i93]Christina Boucher, Travis Gagie, Tomohiro I, Dominik Köppl, Ben Langmead, Giovanni Manzini, Gonzalo Navarro, Alejandro Pacheco, Massimiliano Rossi:
PHONI: Streamed Matching Statistics with Multi-Genome References. CoRR abs/2011.05610 (2020) - [i92]Diego Díaz-Domínguez, Gonzalo Navarro:
A grammar compressor for collections of reads with applications to the construction of the BWT. CoRR abs/2011.07999 (2020) - [i91]Daniel Saad Nogueira Nunes, Felipe A. Louza, Simon Gog, Mauricio Ayala-Rincón, Gonzalo Navarro:
Grammar Compression By Induced Suffix Sorting. CoRR abs/2011.12898 (2020)
2010 – 2019
- 2019
- [j162]Gonzalo Navarro, Victor Sepulveda, Mauricio Marín, Senén González:
Compressed filesystem for managing large genome collections. Bioinform. 35(20): 4120-4128 (2019) - [j161]Héctor Ferrada, Gonzalo Navarro:
Lempel-Ziv compressed structures for document retrieval. Inf. Comput. 265: 1-25 (2019) - [j160]Antonio Fariña, Miguel A. Martínez-Prieto, Francisco Claude, Gonzalo Navarro, Juan J. Lastra-Díaz, Nicola Prezza, Diego Seco:
On the reproducibility of experiments of indexing repetitive document collections. Inf. Syst. 83: 181-194 (2019) - [j159]Nieves R. Brisaboa, Adrián Gómez-Brandón, Gonzalo Navarro, José R. Paramá:
GraCT: A Grammar-based Compressed Index for Trajectory Data. Inf. Sci. 483: 106-135 (2019) - [j158]Daniel Inostroza, Cecilia Hernández, Diego Seco, Gonzalo Navarro, Alvaro Olivera-Nappa:
Cell cycle and protein complex dynamics in discovering signaling pathways. J. Bioinform. Comput. Biol. 17(3): 1950011:1-1950011:21 (2019) - [j157]Gonzalo Navarro, Nicola Prezza:
Universal compressed text indexing. Theor. Comput. Sci. 762: 41-50 (2019) - [j156]Travis Gagie, Meng He, Gonzalo Navarro:
Path queries on functions. Theor. Comput. Sci. 770: 34-50 (2019) - [j155]Gonzalo Navarro:
Document listing on repetitive collections with guaranteed performance. Theor. Comput. Sci. 772: 58-72 (2019) - [j154]Carlos Ochoa, Gonzalo Navarro:
RePair and All Irreducible Grammars are Upper Bounded by High-Order Empirical Entropy. IEEE Trans. Inf. Theory 65(5): 3160-3164 (2019) - [c245]Nieves R. Brisaboa, Ana Cerdeira-Pena, Guillermo de Bernardo, Gonzalo Navarro:
Improved Compressed String Dictionaries. CIKM 2019: 29-38 - [c244]Diego Díaz-Domínguez, Travis Gagie, Gonzalo Navarro:
Simulating the DNA Overlap Graph in Succinct Space. CPM 2019: 26:1-26:20 - [c243]Nieves R. Brisaboa, Antonio Fariña, Adrián Gómez-Brandón, Gonzalo Navarro, Tirso V. Rodeiro:
Dv2v: A Dynamic Variable-to-Variable Compressor. DCC 2019: 83-92 - [c242]Jarno N. Alanko, Travis Gagie, Gonzalo Navarro, Louisa Seelbach Benkner:
Tunneling on Wheeler Graphs. DCC 2019: 122-131 - [c241]José Fuentes-Sepúlveda, Gonzalo Navarro, Yakov Nekrich:
Space-Efficient Computation of the Burrows-Wheeler Transform. DCC 2019: 132-141 - [c240]Gonzalo Navarro, Victor Sepulveda:
Practical Indexing of Repetitive Collections Using Relative Lempel-Ziv. DCC 2019: 201-210 - [c239]