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Daniel P. Miranker

Dan Miranker

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affiliation: University of Texas at Austin, USA

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2017
[j34]
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Juan F. Sequeda, Daniel P. Miranker:
A Pay-As-You-Go Methodology for Ontology-Based Data Access. IEEE Internet Comput. 21(2): 92-96 (2017)
2015
[j33]
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Mayank Kejriwal, Daniel P. Miranker:
An unsupervised instance matcher for schema-free RDF data. J. Web Semant. 35: 102-123 (2015)
2014
[j32]
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Nathan L. Clement, Lee Parnell Thompson, Daniel P. Miranker:
ADaM: augmenting existing approximate fast matching algorithms with efficient and exact range queries. BMC Bioinform. 15(S-7): S1 (2014)
[j31]
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Zachary Elkins, Tom Ginsburg, James Melton, Robert Shaffer, Juan F. Sequeda, Daniel P. Miranker:
Constitute: The world's constitutions to read, search, and compare. J. Web Semant. 27-28: 10-18 (2014)
2013
[j30]
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Lei Shang, David P. Gardner, Weijia Xu, Jamie J. Cannone, Daniel P. Miranker, Stuart Ozer, Robin Ray Gutell:
Two accurate sequence, structure, and phylogenetic template-based RNA alignment systems. BMC Syst. Biol. 7(S-4): S13 (2013)
[j29]
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Juan F. Sequeda, Daniel P. Miranker:
Ultrawrap: SPARQL execution on relational data. J. Web Semant. 22: 19-39 (2013)
2012
[j28]
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Rui Mao, Willard L. Miranker, Daniel P. Miranker:
Pivot selection: Dimension reduction for distance-based indexing. J. Discrete Algorithms 13: 32-46 (2012)
[j27]
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Marcelo Arenas, Claudio Gutierrez, Daniel P. Miranker, Jorge Pérez, Juan F. Sequeda:
Querying Semantic Data on the Web? SIGMOD Rec. 41(4): 6-17 (2012)
2011
[j26]
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Syed Hamid Tirmizi, Stuart Aitken, Dilvan A. Moreira, Chris Mungall, Juan F. Sequeda, Nigam H. Shah, Daniel P. Miranker:
Mapping between the OBO and OWL ontology languages. J. Biomed. Semant. 2(S-1): S3 (2011)
[j25]
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Juan F. Sequeda, Syed Hamid Tirmizi, Óscar Corcho, Daniel P. Miranker:
Survey of directly mapping SQL databases to the Semantic Web. Knowl. Eng. Rev. 26(4): 445-486 (2011)
2010
[j24]
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  - journals/sigspatial/Miranke10
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Daniel P. Miranker:
Metric-space search in bioinformatics. ACM SIGSPATIAL Special 2(2): 32-35 (2010)
2009
[j23]
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Smriti R. Ramakrishnan, Christine Vogel, John T. Prince, Rong Wang, Zhihua Li, Luiz O. F. Penalva, Margaret Myers, Edward M. Marcotte, Daniel P. Miranker:
Integrating shotgun proteomics and mRNA expression data to improve protein identification. Bioinform. 25(11): 1397-1403 (2009)
[j22]
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Smriti R. Ramakrishnan, Christine Vogel, Taejoon Kwon, Luiz O. F. Penalva, Edward M. Marcotte, Daniel P. Miranker:
Mining gene functional networks to improve mass-spectrometry-based protein identification. Bioinform. 25(22): 2955-2961 (2009)
2008
[j21]
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Sapna Bafna, Julian Humphries, Daniel P. Miranker:
Schema driven assignment and implementation of life science identifiers (LSIDs). J. Biomed. Informatics 41(5): 730-738 (2008)
2007
[j20]
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Shu Wang, Robin Ray Gutell, Daniel P. Miranker:
Biclustering as a method for RNA local multiple sequence alignment. Bioinform. 23(24): 3289-3296 (2007)
[j19]
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Xochitl C. Morgan, Shulin Ni, Daniel P. Miranker, Vishwanath R. Iyer:
Predicting combinatorial binding of transcription factors to regulatory elements in the human genome by association rule mining. BMC Bioinform. 8 (2007)
[j18]
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François Barbançon, Daniel P. Miranker:
SPHINX: Schema integration by example. J. Intell. Inf. Syst. 29(2): 145-184 (2007)
2006
[j17]
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Smriti R. Ramakrishnan, Rui Mao, Aleksey A. Nakorchevskiy, John T. Prince, Willard S. Willard, Weijia Xu, Edward M. Marcotte, Daniel P. Miranker:
A fast coarse filtering method for peptide identification by mass spectrometry. Bioinform. 22(12): 1524-1531 (2006)
2005
[j16]
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Rui Mao, Weijia Xu, Neha Singh, Daniel P. Miranker:
An Assessment of a Metric Space Database Index to Support Sequence Homology. Int. J. Artif. Intell. Tools 14(5): 867-885 (2005)
2004
[j15]
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Weijia Xu, Daniel P. Miranker:
A metric model of amino acid substitution. Bioinform. 20(8): 1214-1221 (2004)
[j14]
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Weijia Xu, Daniel P. Miranker:
A metric model of amino acid substitution. Bioinform. 20(18): 3716 (2004)
[j13]
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Daniel P. Miranker, Willard J. Briggs, Rui Mao, Shulin Ni, Weijia Xu:
Biosequence Use Cases in MoBIoS SQL. IEEE Data Eng. Bull. 27(3): 3-11 (2004)
2003
[j12]
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  - journals/omics/Miranker03
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Daniel P. Miranker:
Metric-Space Indexes as a Basis for Scalable Biological Databases. OMICS 7(1): 57-60 (2003)
2002
[j11]
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Joseph M. Hellerstein, Elias Koutsoupias, Daniel P. Miranker, Christos H. Papadimitriou, Vasilis Samoladas:
On a model of indexability and its bounds for range queries. J. ACM 49(1): 35-55 (2002)
1996
[j10]
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  - journals/tpds/WuMB96
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Shiow-Yang Wu, Daniel P. Miranker, James C. Browne:
Decomposition Abstraction in Parallel Rule Languages. IEEE Trans. Parallel Distributed Syst. 7(11): 1164-1184 (1996)
1995
[j9]
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James C. Browne, E. Allen Emerson, Mohamed G. Gouda, Daniel P. Miranker, Aloysius K. Mok, Lance Obermeyer, F. Furman Haddix, Rwo-Hsi Wang, Sarah E. Chodrow:
Modularity and Rule-Based Programming. Int. J. Artif. Intell. Tools 4(1-2): 201-218 (1995)
1994
[j8]
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Roberto J. Bayardo Jr., Daniel P. Miranker:
An Optimal Backtrack Algorithm for Tree-Structured Constraint Satisfaction problems. Artif. Intell. 71(1): 159-181 (1994)
1993
[j7]
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Daniel P. Miranker, Frederic H. Burke, Jeri J. Steele, John Kolts, David R. Haug:
The C₊₊ Embeddable Rule System. Int. J. Artif. Intell. Tools 2(1): 33-46 (1993)
[j6]
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Benjamin W. Wah, Thomas S. Huang, Aravind K. Joshi, Dan I. Moldovan, Yiannis Aloimonos, Ruzena Bajcsy, Dana H. Ballard, Doug DeGroot, Kenneth A. De Jong, Charles R. Dyer, Scott E. Fahlman, Ralph Grishman, Lynette Hirschman, Richard E. Korf, Stephen E. Levinson, Daniel P. Miranker, N. H. Morgan, Sergei Nirenburg, Tomaso A. Poggio, Edward M. Riseman, Craig Stanfil, Salvatore J. Stolfo, Steven L. Tanimoto, Charles C. Weems:
Report on Workshop on High Performance Computing and Communications for Grand Challenge Applications: Computer Vision, Speech and Natural Language Processing, and Artificial Intelligence. IEEE Trans. Knowl. Data Eng. 5(1): 138-154 (1993)
1992
[j5]
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  - journals/computing/ShankarM92
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Raghu Shankar, Daniel P. Miranker:
Credible execution of bounded-time parallel systems with delayed diagnosis. Computing 48(1): 21-37 (1992)
1991
[j4]
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Daniel P. Miranker:
Special Issue on the Parallel Execution of Rule Systems. J. Parallel Distributed Comput. 13(4): 345-347 (1991)
[j3]
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Chin-Ming Kuo, Daniel P. Miranker, James C. Browne:
On the Performance of the CREL System. J. Parallel Distributed Comput. 13(4): 424-441 (1991)
[j2]
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Daniel P. Miranker, Bernie J. Lofaso:
The Organization and Performance of a TREAT-Based Production System Compiler. IEEE Trans. Knowl. Data Eng. 3(1): 3-10 (1991)
1986
[j1]
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Salvatore J. Stolfo, Daniel P. Miranker:
The DADO Production System Machine. J. Parallel Distributed Comput. 3(2): 269-296 (1986)

Conference and Workshop Papers

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2019
[c75]
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Juan F. Sequeda, Willard J. Briggs, Daniel P. Miranker, Wayne P. Heideman:
A Pay-as-you-go Methodology to Design and Build Enterprise Knowledge Graphs from Relational Databases. ISWC (2) 2019: 526-545
2017
[c74]
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Juan F. Sequeda, Daniel P. Miranker:
Towards a Pay-as-you-go Methodology for Ontology and Mapping Engineering in Ontology Based Data Access. ISWC (Posters, Demos & Industry Tracks) 2017
2016
[c73]
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Mayank Kejriwal, Daniel P. Miranker:
Local, Domain-independent Heuristics for the FEIII Challenge: Lessons and Observations. DSMM@SIGMOD 2016: 17:1-17:2
2015
[c72]
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Mayank Kejriwal, Daniel P. Miranker:
Sorted Neighborhood for Schema-free RDF Data. KNOW@LOD 2015
[c71]
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Mayank Kejriwal, Daniel P. Miranker:
Minimally Supervised Instance Matching: An Alternate Approach. ESWC (Satellite Events) 2015: 72-76
[c70]
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Mayank Kejriwal, Daniel P. Miranker:
Sorted Neighborhood for Schema-Free RDF Data. ESWC (Satellite Events) 2015: 217-229
[c69]
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Mayank Kejriwal, Daniel P. Miranker:
Semi-supervised Instance Matching Using Boosted Classifiers. ESWC 2015: 388-402
[c68]
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Mayank Kejriwal, Daniel P. Miranker:
Decision-Making Bias in Instance Matching Model Selection. ISWC (1) 2015: 392-407
[c67]
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Juan F. Sequeda, Daniel P. Miranker:
Ultrawrap Mapper: A Semi-Automatic Relational Database to RDF (RDB2RDF) Mapping Tool. ISWC (Posters & Demos) 2015
2014
[c66]
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Lee Parnell Thompson, Weijia Xu, Daniel P. Miranker:
The Adaptive Projection Forest: Using adjustable exclusion and parallelism in metric space indexes. IEEE BigData 2014: 615-620
[c65]
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Rui Mao, Sheng Liu, Honglong Xu, Dian Zhang, Daniel P. Miranker:
On Data Partitioning in Tree Structure Metric-Space Indexes. DASFAA (1) 2014: 141-155
[c64]
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Mayank Kejriwal, Daniel P. Miranker:
A two-step blocking scheme learner for scalable link discovery. OM 2014: 49-60
[c63]
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Mayank Kejriwal, Daniel P. Miranker:
On Linking Heterogeneous Dataset Collections. ISWC (Posters & Demos) 2014: 217-220
[c62]
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Juan F. Sequeda, Marcelo Arenas, Daniel P. Miranker:
OBDA: Query Rewriting or Materialization? In Practice, Both! ISWC (1) 2014: 535-551
[c61]
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Aibo Tian, Mayank Kejriwal, Daniel P. Miranker:
Schema matching over relations, attributes, and data values. SSDBM 2014: 28:1-28:12
2013
[c60]
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Lee Parnell Thompson, Weijia Xu, Daniel P. Miranker:
Fast scalable selection algorithms for large scale data. IEEE BigData 2013: 412-420
[c59]
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  - conf/icdm/KejriwalM13
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Mayank Kejriwal, Daniel P. Miranker:
An Unsupervised Algorithm for Learning Blocking Schemes. ICDM 2013: 340-349
[c58]
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Philippe Cudré-Mauroux, Iliya Enchev, Sever Fundatureanu, Paul Groth, Albert Haque, Andreas Harth, Felix Leif Keppmann, Daniel P. Miranker, Juan F. Sequeda, Marcin Wylot:
NoSQL Databases for RDF: An Empirical Evaluation. ISWC (2) 2013: 310-325
[c57]
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Aibo Tian, Juan F. Sequeda, Daniel P. Miranker:
QODI: Query as Context in Automatic Data Integration. ISWC (1) 2013: 624-639
2012
[c56]
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  - conf/bibm/GardnerXMOCG12
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David P. Gardner, Weijia Xu, Daniel P. Miranker, Stuart Ozer, Jamie J. Cannone, Robin Ray Gutell:
An accurate scalable template-based alignment algorithm. BIBM 2012: 1-7
[c55]
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Juan F. Sequeda, Marcelo Arenas, Daniel P. Miranker:
Ontology-Based Data Access Using Views. RR 2012: 262-265
[c54]
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Daniel P. Miranker, Rodolfo Depena, Hyunjoon Jung, Juan F. Sequeda, Carlos Reyna:
Diamond Debugger Demo: Rete-Based Processing of Linked Data. RuleML (2) 2012
[c53]
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Aibo Tian, Juan F. Sequeda, Daniel P. Miranker:
Queries, the Missing Link in Automatic Data Integration. ISWC (Posters & Demos) 2012
[c52]
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Aibo Tian, Juan F. Sequeda, Daniel P. Miranker:
On ambiguity and query-specific ontology mapping. OM 2012
[c51]
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Juan F. Sequeda, Marcelo Arenas, Daniel P. Miranker:
On directly mapping relational databases to RDF and OWL. WWW 2012: 649-658
2011
[c50]
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Yanan Jiang, Weijia Xu, Lee Parnell Thompson, Robin Ray Gutell, Daniel P. Miranker:
R-PASS: A Fast Structure-Based RNA Sequence Alignment Algorithm. BIBM 2011: 618-622
2010
[c49]
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Rui Mao, Willard L. Miranker, Daniel P. Miranker:
Dimension reduction for distance-based indexing. SISAP 2010: 25-32
[c48]
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Rui Mao, Smriti R. Ramakrishnan, Glen Nuckolls, Daniel P. Miranker:
An inverted index for mass spectra similarity query and comparison with a metric-space method: case study. SISAP 2010: 93-99
2009
[c47]
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Syed Hamid Tirmizi, Stuart Aitken, Dilvan A. Moreira, Chris Mungall, Juan F. Sequeda, Nigam H. Shah, Daniel P. Miranker:
OBO & OWL: Roundtrip Ontology Transformations. SWAT4LS 2009
2008
[c46]
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Syed Hamid Tirmizi, Juan F. Sequeda, Daniel P. Miranker:
Translating SQL Applications to the Semantic Web. DEXA 2008: 450-464
[c45]
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Daniel P. Miranker:
Evolving models of biological sequence similarity. ICDE Workshops 2008: 301-307
[c44]
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Weijia Xu, Daniel P. Miranker, Rui Mao, Smriti R. Ramakrishnan:
Anytime k-nearest neighbor search for database applications. ICDE Workshops 2008: 426-435
[c43]
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Juan F. Sequeda, Syed Hamid Tirmizi, Daniel P. Miranker:
A Bootstrapping Architecture for Integration of Relational Databases to the Semantic Web. ISWC (Posters & Demos) 2008
[c42]
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Daniel P. Miranker:
Evolving Models of Biological Sequence Similarity. SISAP 2008: 3-9
[c41]
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Weijia Xu, Daniel P. Miranker, Rui Mao, Smriti R. Ramakrishnan:
Anytime K-Nearest Neighbor Search for Database Applications. SISAP 2008: 139-148
2006
[c40]
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Syed Hamid Tirmizi, Daniel P. Miranker:
Two Layer Cakes. AAAI Fall Symposium: Semantic Web for Collaborative Knowledge Acquisition 2006: 112-
[c39]
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Weijia Xu, Rui Mao, Shu Wang, Daniel P. Miranker:
On Integrating Peptide Sequence Analysis and Relational Distance-Based Indexing. BIBE 2006: 27-34
2005
[c38]
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Rui Mao, Wenguo Liu, Daniel P. Miranker, Qasim Iqbal:
Case Study: Distance-Based Image Retrieval in the MoBIoS DBMS. CIT 2005: 49-57
[c37]
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Rui Mao, Weijia Xu, Smriti R. Ramakrishnan, Glen Nuckolls, Daniel P. Miranker:
On Optimizing Distance-Based Similarity Search for Biological Databases. CSB 2005: 351-361
2004
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François Barbançon, Daniel P. Miranker:
Interactive Schema Integration with Sphinx. FQAS 2004: 175-190
[c35]
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Weijia Xu, Willard J. Briggs, Joanna Padolina, Ruth E. Timme, Wenguo Liu, C. Randal Linder, Daniel P. Miranker:
Using MoBIoS' scalable genome join to find conserved primer pair candidates between two genomes. ISMB/ECCB (Supplement of Bioinformatics) 2004: 355-362
2003
[c34]
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Luay Nakhleh, Daniel P. Miranker, François Barbançon, William H. Piel, Michael J. Donoghue:
Requirements of Phylogenetic Databases. BIBE 2003: 141-148
[c33]
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Rui Mao, Weijia Xu, Neha Singh, Daniel P. Miranker:
An Assessment of a Metric Space Database Index to Support Sequence Homology. BIBE 2003: 375-
[c32]
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Daniel P. Miranker, Weijia Xu, Rui Mao:
MoBIoS: A Metric-Space DBMS to Support Biological Discovery. SSDBM 2003: 241-244
2002
[c31]
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François Barbançon, Daniel P. Miranker:
Implementing Federated Database Systems by Compiling SchemaSQL. IDEAS 2002: 192-201
[c30]
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Daniel P. Miranker, Malcolm C. Taylor, Anand Padmanaban:
A Tractable Query Cache by Approximation. SARA 2002: 140-151
1999
[c29]
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Lane Warshaw, Daniel P. Miranker:
Rule-Based Query Optimization, Revisited. CIKM 1999: 267-275
1998
[c28]
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Vasilis Samoladas, Daniel P. Miranker:
A Lower Bound Theorem for Indexing Schemes and Its Application to Multidimensional Range Queries. PODS 1998: 44-51
1997
[c27]
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Daniel P. Miranker, Roberto J. Bayardo Jr., Vasilis Samoladas:
Query Evaluation as Constraint Search; An Overview of Early Results. CDB 1997: 53-63
[c26]
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Lance Obermeyer, Daniel P. Miranker:
Evaluating Triggers Using Decision Trees. CIKM 1997: 144-150
[c25]
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Daniel P. Miranker, Vasilis Samoladas:
Alamo: An Architecture for Integrating Heterogeneous Data Sources. KRDB 1997: 14.1-14.8
1996
[c24]
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Roberto J. Bayardo Jr., Daniel P. Miranker:
A Complexity Analysis of Space-Bounded Learning Algorithms for the Constraint Satisfaction Problem. AAAI/IAAI, Vol. 1 1996: 298-304
[c23]
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Lance Obermeyer, Lane Warshaw, Daniel P. Miranker:
Porting an expert database application to an active database: an experience report. DART@CIKM 1996: 37-40
[c22]
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Roberto J. Bayardo Jr., Daniel P. Miranker:
Processing Queries for First Few Answers. CIKM 1996: 45-52
[c21]
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Lane Warshaw, Daniel P. Miranker:
A Case Study of Venus and a Declarative Basis for Rule Modules. CIKM 1996: 317-325
[c20]
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Daniel P. Miranker, Lance Obermeyer:
An Overview of the VenusDB Active Multidatabase System. CODAS 1996: 108-117
1995
[c19]
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Stephen Correl, Daniel P. Miranker:
On Isolation, Concurrency, and the Venus Rule Language. CIKM 1995: 281-289
[c18]
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Lance Obermeyer, Daniel P. Miranker, David A. Brant:
Selective indexing speeds production systems. ICTAI 1995: 416-423
[c17]
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Roberto J. Bayardo Jr., Daniel P. Miranker:
On the Space-Time Trade-off in Solving Constraint Satisfaction Problems. IJCAI 1995: 558-562
1994
[c16]
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David Gadbois, Daniel P. Miranker:
Discovering Procedural Executions of Rule-Based Programs. AAAI 1994: 459-464
[c15]
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  - conf/icpads/WuMB94
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Shiow-Yang Wu, Daniel P. Miranker, James C. Browne:
Toward Semantic-Based Parallelism in Production Systems. ICPADS 1994: 752-758
[c14]
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James C. Browne, E. Allen Emerson, Mohamed G. Gouda, Daniel P. Miranker, Aloysius K. Mok, Roberto J. Bayardo Jr., Sarah E. Chodrow, David Gadbois, F. Furman Haddix, Thomas W. Hetherington, Lance Obermeyer, Duu-Chung Tsou, Chih-Kan Wang, Rwo-Hsi Wang:
A New Approach to Modularity in Rule-Based Programming. ICTAI 1994: 18-25
[c13]
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François Pachet, Patrick Albert, Brian M. Barry, Brian Donnell, John McGehee, Dan Miranker:
Embedded object-oriented production systems (OOPS): workshop report. OOPSLA Addendum 1994: 87-91
1993
[c12]
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David A. Brant, Daniel P. Miranker:
Index Support for Rule Activation. SIGMOD Conference 1993: 42-48
1992
[c11]
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Mark Perlin, Jaime G. Carbonell, Daniel P. Miranker, Salvatore J. Stolfo, Milind Tambe:
Is Production System Match Interesting? ICTAI 1992: 2-3
1991
[c10]
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Daniel P. Miranker, Frederic H. Burke, John Kolts, Jeri J. Steele:
The C++ embeddable rule system. ICTAI 1991: 386-393
[c9]
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David A. Brant, Timothy Grose, Bernie J. Lofaso, Daniel P. Miranker:
Effects of Database Size on Rule System Performance: Five Case Studies. VLDB 1991: 287-296
1990
[c8]
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Daniel P. Miranker, David A. Brant, Bernie J. Lofaso, David Gadbois:
On the Performance of Lazy Matching in Production Systems. AAAI 1990: 685-692
[c7]
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Daniel P. Miranker, David A. Brant:
An Algorithmic Basis for Integrating Production Systems and Large Databases. ICDE 1990: 353-360
[c6]
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Daniel P. Miranker, Chin-Ming Kuo, James C. Browne:
Parallelizing Compilation of Rule-Based Programs. ICPP (2) 1990: 247-251
[c5]
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Daniel P. Miranker, Archie D. Andrews:
On Balanced Synchronous Parallel Computers for AI. ICPP (1) 1990: 489-493
1987
[c4]
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Daniel P. Miranker:
TREAT: A Better Match Algorithm for AI Production System Matching. AAAI 1987: 42-47
1986
[c3]
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Michael van Biema, Daniel P. Miranker, Salvatore J. Stolfo:
The Do-loop Considered Harmful in Production System Programming. Expert Database Conf. 1986: 177-190
1984
[c2]
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Daniel P. Miranker:
Performance Estimates for the DADO Machine: A Comparison of Treat and Rete. FGCS 1984: 449-457
1983
[c1]
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Salvatore J. Stolfo, Daniel P. Miranker, David Elliot Shaw:
Architecture and Applications of DADO: A Large-Scale Parallel Computer for Artificial Intelligence. IJCAI 1983: 850-854

Parts in Books or Collections

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2014
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Juan F. Sequeda, Daniel P. Miranker:
Mapping Relational Databases to Linked Data. Linked Data Management 2014: 95-115

Informal and Other Publications

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What is the meaning of the colors in the publication lists?

2024
[i6]
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Zeyuan Hu, Daniel P. Miranker:
TreeTracker Join: Turning the Tide When a Tuple Fails to Join. CoRR abs/2403.01631 (2024)
2016
[i5]
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Mayank Kejriwal, Daniel P. Miranker:
Self-contained NoSQL Resources for Cross-Domain RDF. CoRR abs/1608.04437 (2016)
[i4]
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Mayank Kejriwal, Daniel P. Miranker:
Experience: Type alignment on DBpedia and Freebase. CoRR abs/1608.04442 (2016)
2015
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Mayank Kejriwal, Daniel P. Miranker:
A DNF Blocking Scheme Learner for Heterogeneous Datasets. CoRR abs/1501.01694 (2015)
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Mayank Kejriwal, Daniel P. Miranker:
On the Complexity of Sorted Neighborhood. CoRR abs/1501.01696 (2015)
2012
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  - journals/corr/abs-1202-3667
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Juan F. Sequeda, Marcelo Arenas, Daniel P. Miranker:
On Directly Mapping Relational Databases to RDF and OWL (Extended Version). CoRR abs/1202.3667 (2012)

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