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Lila Kari
Lila Santean
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- affiliation: University of Western Ontario, Canada
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2020 – today
- 2024
- [c72]Zahra Gharaee, Scott C. Lowe, ZeMing Gong, Pablo Millan Arias, Nicholas Pellegrino, Austin T. Wang, Joakim Bruslund Haurum, Iuliia Eyriay, Lila Kari, Dirk Steinke, Graham W. Taylor, Paul W. Fieguth, Angel X. Chang:
BIOSCAN-5M: A Multimodal Dataset for Insect Biodiversity. NeurIPS 2024 - [i24]Zahra Gharaee, Scott C. Lowe, ZeMing Gong, Pablo Millan Arias, Nicholas Pellegrino, Austin T. Wang, Joakim Bruslund Haurum, Iuliia Zarubiieva, Lila Kari, Dirk Steinke, Graham W. Taylor, Paul W. Fieguth, Angel X. Chang:
BIOSCAN-5M: A Multimodal Dataset for Insect Biodiversity. CoRR abs/2406.12723 (2024) - [i23]Fatemeh Alipour, Kathleen A. Hill, Lila Kari:
CGRclust: Chaos Game Representation for Twin Contrastive Clustering of Unlabelled DNA Sequences. CoRR abs/2407.02538 (2024) - 2023
- [j152]Pablo Millan Arias
, Kathleen A. Hill
, Lila Kari:
iDeLUCS: a deep learning interactive tool for alignment-free clustering of DNA sequences. Bioinform. 39(9) (2023) - [j151]Lila Kari:
Editorial. Theor. Comput. Sci. 940(Part): 1 (2023) - [i22]Pablo Millan Arias, Niousha Sadjadi, Monireh Safari, ZeMing Gong, Austin T. Wang, Scott C. Lowe, Joakim Bruslund Haurum, Iuliia Zarubiieva, Dirk Steinke, Lila Kari, Angel X. Chang, Graham W. Taylor:
BarcodeBERT: Transformers for Biodiversity Analysis. CoRR abs/2311.02401 (2023) - 2022
- [j150]David Chen, Gurjit S. Randhawa, Maximillian P. M. Soltysiak, Camila P. E. de Souza, Lila Kari, Shiva M. Singh, Kathleen A. Hill:
SomaticSiMu: a mutational signature simulator. Bioinform. 38(9): 2619-2620 (2022) - [j149]Lila Kari, Kalpana Mahalingam, Palak Pandoh, Zihao Wang:
Primitivity of Atom Watson-Crick Fibonacci Words. J. Autom. Lang. Comb. 27(1-3): 151-178 (2022) - [j148]Lila Kari:
Editorial. Theor. Comput. Sci. 908: 1 (2022) - [j147]Lila Kari:
Editorial. Theor. Comput. Sci. 920: iii (2022) - [j146]Lila Kari:
Editorial. Theor. Comput. Sci. 924: iii (2022) - [j145]Lila Kari:
Editorial. Theor. Comput. Sci. 926: iii (2022) - [c71]Lila Kari, Kalpana Mahalingam
:
Watson-Crick Powers of a Word. CAI 2022: 136-148 - 2021
- [j144]Lila Kari, Timothy Ng
:
Descriptional Complexity of Semi-Simple Splicing Systems. Int. J. Found. Comput. Sci. 32(6): 685-711 (2021) - [j143]Lila Kari, Manasi S. Kulkarni, Kalpana Mahalingam, Zihao Wang:
Involutive Fibonacci Words. J. Autom. Lang. Comb. 26(3-4): 255-280 (2021) - [j142]Francesco Bellamoli
, Giuditta Franco
, Lila Kari, Silvia Lampis, Timothy Ng, Zihao Wang:
Conjugate word blending: formal model and experimental implementation by XPCR. Nat. Comput. 20(4): 647-658 (2021) - [j141]Lila Kari:
Editorial. Theor. Comput. Sci. 851: iii (2021) - [j140]Lila Kari, Ion Petre
, Grzegorz Rozenberg, Arto Salomaa:
A fascinating rainbow of computation - Honoring Gheorghe Păun on the occasion of his 70th birthday. Theor. Comput. Sci. 862: 1-2 (2021) - [j139]Lila Kari:
Editorial. Theor. Comput. Sci. 862: iii (2021) - [j138]Lila Kari:
Editorial. Theor. Comput. Sci. 870: iii (2021) - [j137]Lila Kari:
Editorial. Theor. Comput. Sci. 872: iii (2021) - [j136]Lila Kari:
Editorial. Theor. Comput. Sci. 875: iii (2021) - [j135]Lila Kari:
Editorial. Theor. Comput. Sci. 881: iii (2021) - [j134]Lila Kari:
Editorial. Theor. Comput. Sci. 893: iii (2021) - [j133]Paola Bonizzoni, Lila Kari, Ion Petre
, Grzegorz Rozenberg:
Building bridges - Honoring Nataša Jonoska on the occasion of her 60th birthday. Theor. Comput. Sci. 894: 1-2 (2021) - [j132]Lila Kari:
Editorial. Theor. Comput. Sci. 894: iii (2021) - 2020
- [j131]Gurjit S. Randhawa
, Kathleen A. Hill
, Lila Kari:
MLDSP-GUI: an alignment-free standalone tool with an interactive graphical user interface for DNA sequence comparison and analysis. Bioinform. 36(7): 2258-2259 (2020) - [j130]Srujan Kumar Enaganti, Lila Kari, Timothy Ng
, Zihao Wang
:
Word Blending in Formal Languages. Fundam. Informaticae 171(1-4): 151-173 (2020) - [j129]Janusz A. Brzozowski, Lila Kari, Bai Li, Marek Szykula
:
State Complexity of Overlap Assembly. Int. J. Found. Comput. Sci. 31(8): 1113-1132 (2020) - [j128]Lila Kari:
Editorial. Theor. Comput. Sci. 801: iii (2020) - [j127]Lila Kari:
Editorial. Theor. Comput. Sci. 805: iii (2020) - [j126]Giorgio Ausiello, Lila Kari, Grzegorz Rozenberg, Donald Sannella
, Paul G. Spirakis, Pierre-Louis Curien:
Preface. Theor. Comput. Sci. 807: 1-2 (2020) - [j125]Lila Kari:
Editorial. Theor. Comput. Sci. 816: iii (2020) - [j124]Lila Kari:
Editorial. Theor. Comput. Sci. 817: iii (2020) - [j123]Lila Kari:
Editorial. Theor. Comput. Sci. 832: iii (2020) - [j122]Lila Kari:
Editorial. Theor. Comput. Sci. 843: iii (2020) - [c70]Lila Kari, Timothy Ng:
Descriptional Complexity of Semi-simple Splicing Systems. DLT 2020: 150-163
2010 – 2019
- 2019
- [j121]Lila Kari, Amirhossein Simjour:
Simplifying the role of signals in tile self-assembly. Nat. Comput. 18(2): 383-401 (2019) - [j120]Lila Kari:
Editorial. Theor. Comput. Sci. 765: iii (2019) - [j119]Giorgio Ausiello, Lila Kari, Grzegorz Rozenberg, Donald Sannella
, Paul G. Spirakis, Pierre-Louis Curien:
Preface. Theor. Comput. Sci. 777: 1-2 (2019) - [j118]Lila Kari:
Editorial. Theor. Comput. Sci. 785: iii (2019) - [c69]Lila Kari, Timothy Ng
:
State Complexity of Simple Splicing. DCFS 2019: 197-209 - [c68]Lila Kari, Timothy Ng
:
State Complexity of Pseudocatenation. LATA 2019: 203-214 - [i21]Lila Kari, Timothy Ng:
Descriptional Complexity of Semi-Simple Splicing Systems. CoRR abs/1909.02512 (2019) - 2018
- [j117]Lila Kari, Stavros Konstantinidis, Steffen Kopecki, Meng Yang:
Efficient Algorithms for Computing the Inner Edit Distance of a Regular Language via Transducers. Algorithms 11(11): 165 (2018) - [j116]Lila Kari, Stavros Konstantinidis
, Steffen Kopecki:
Transducer descriptions of DNA code properties and undecidability of antimorphic problems. Inf. Comput. 259(2): 237-258 (2018) - [j115]Lila Kari, Manasi S. Kulkarni, Kalpana Mahalingam:
Relative Watson-Crick Primitivity of Words. J. Autom. Lang. Comb. 23(1-3): 201-217 (2018) - [j114]Lila Kari:
Editorial. Theor. Comput. Sci. 724: iii (2018) - [j113]Lila Kari:
Editorial. Theor. Comput. Sci. 736: iii (2018) - [j112]Lila Kari:
Editorial. Theor. Comput. Sci. 752: iii (2018) - [c67]Srujan Kumar Enaganti, Lila Kari, Timothy Ng
, Zihao Wang
:
Word Blending in Formal Languages: The Brangelina Effect. UCNC 2018: 72-85 - [c66]Janusz A. Brzozowski, Lila Kari, Bai Li, Marek Szykula
:
State Complexity of Overlap Assembly. CIAA 2018: 109-120 - 2017
- [j111]Lila Kari, Manasi S. Kulkarni
:
Disjunctivity and other properties of sets of pseudo-bordered words. Acta Informatica 54(4): 379-398 (2017) - [j110]Lila Kari, Steffen Kopecki, Pierre-Étienne Meunier, Matthew J. Patitz
, Shinnosuke Seki:
Binary Pattern Tile Set Synthesis Is NP-Hard. Algorithmica 78(1): 1-46 (2017) - [j109]Rallis Karamichalis, Lila Kari:
MoDMaps3D: an interactive webtool for the quantification and 3D visualization of interrelationships in a dataset of DNA sequences. Bioinform. 33(19): 3091-3093 (2017) - [j108]Lila Kari, Amirhossein Simjour:
Smart Tile Self-Assembly and Replication. Fundam. Informaticae 154(1-4): 239-260 (2017) - [j107]Srujan Kumar Enaganti, Oscar H. Ibarra, Lila Kari, Steffen Kopecki:
Further remarks on DNA overlap assembly. Inf. Comput. 253: 143-154 (2017) - [j106]Lila Kari, Steffen Kopecki:
Deciding whether a regular language is generated by a splicing system. J. Comput. Syst. Sci. 84: 263-287 (2017) - [j105]Srujan Kumar Enaganti, Oscar H. Ibarra, Lila Kari, Steffen Kopecki:
On the overlap assembly of strings and languages. Nat. Comput. 16(1): 175-185 (2017) - [j104]Lila Kari:
Editorial. Theor. Comput. Sci. 671: 1 (2017) - [j103]Lila Kari:
Editorial. Theor. Comput. Sci. 682: 1 (2017) - [j102]Lila Kari:
Editorial. Theor. Comput. Sci. 701: 1 (2017) - [i20]Janusz A. Brzozowski, Lila Kari, Bai Li, Marek Szykula:
State Complexity of Overlap Assembly. CoRR abs/1710.06000 (2017) - 2016
- [j101]Rallis Karamichalis, Lila Kari, Stavros Konstantinidis
, Steffen Kopecki, Stephen Solis-Reyes
:
Additive methods for genomic signatures. BMC Bioinform. 17: 313 (2016) - [j100]Oscar H. Ibarra, Lila Kari, Steffen Kopecki:
Preface. Nat. Comput. 15(1): 1-3 (2016) - [j99]Lila Kari:
Editorial. Theor. Comput. Sci. 623: 1 (2016) - [j98]Lila Kari:
Editorial. Theor. Comput. Sci. 632: 1 (2016) - [j97]Lila Kari:
Editorial. Theor. Comput. Sci. 633: 1 (2016) - [j96]Lila Kari:
Editorial. Theor. Comput. Sci. 641: 1 (2016) - 2015
- [j95]Helmut Jürgensen, Lila Kari, Steffen Kopecki:
Methods for Relativizing Properties of Codes. Acta Cybern. 22(2): 259-292 (2015) - [j94]Rallis Karamichalis, Lila Kari, Stavros Konstantinidis
, Steffen Kopecki:
An investigation into inter- and intragenomic variations of graphic genomic signatures. BMC Bioinform. 16: 246:1-246:22 (2015) - [j93]Srujan Kumar Enaganti, Lila Kari, Steffen Kopecki:
A Formal Language Model of DNA Polymerase Enzymatic Activity. Fundam. Informaticae 138(1-2): 179-192 (2015) - [j92]Lila Kari, Steffen Kopecki, Shinnosuke Seki:
3-color bounded patterned self-assembly. Nat. Comput. 14(2): 279-292 (2015) - [j91]Giorgio Ausiello, Lila Kari, Grzegorz Rozenberg, Donald Sannella
:
TCS in the 21st century. Theor. Comput. Sci. 591: 3-4 (2015) - [j90]Lila Kari:
Editorial. Theor. Comput. Sci. 598: 1 (2015) - [j89]Lila Kari:
Editorial. Theor. Comput. Sci. 599: 1 (2015) - [j88]Lila Kari:
Editorial. Theor. Comput. Sci. 608: 1 (2015) - [c65]Lila Kari, Stavros Konstantinidis
, Steffen Kopecki:
Transducer Descriptions of DNA Code Properties and Undecidability of Antimorphic Problems. DCFS 2015: 141-152 - [c64]Lila Kari, Steffen Kopecki, Pierre-Étienne Meunier, Matthew J. Patitz
, Shinnosuke Seki:
Binary Pattern Tile Set Synthesis Is NP-hard. ICALP (1) 2015: 1022-1034 - [i19]Lila Kari, Stavros Konstantinidis
, Steffen Kopecki:
Transducer Descriptions of DNA Code Properties and Undecidability of Antimorphic Problems. CoRR abs/1503.00035 (2015) - 2014
- [j87]Lila Kari, Steffen Kopecki, Amirhossein Simjour:
Hypergraph Automata: a Theoretical Model for patterned Self-assembly. Int. J. Found. Comput. Sci. 25(4): 419-440 (2014) - [j86]Lila Kari, Manasi S. Kulkarni:
Generating the Pseudo-Powers of a Word. J. Autom. Lang. Comb. 19(1-4): 157-171 (2014) - [j85]Lila Kari, Stavros Konstantinidis
, Steffen Kopecki:
On the maximality of languages with combined types of code properties. Theor. Comput. Sci. 550: 79-89 (2014) - [c63]Lila Kari, Manasi S. Kulkarni:
Pseudo-Identities and Bordered Words. Discrete Mathematics and Computer Science 2014: 207-222 - [e1]Oscar H. Ibarra, Lila Kari, Steffen Kopecki:
Unconventional Computation and Natural Computation - 13th International Conference, UCNC 2014, London, ON, Canada, July 14-18, 2014, Proceedings. Lecture Notes in Computer Science 8553, Springer 2014, ISBN 978-3-319-08122-9 [contents] - [i18]Lila Kari, Steffen Kopecki, Pierre-Étienne Meunier, Matthew J. Patitz, Shinnosuke Seki:
Binary pattern tile set synthesis is NP-hard. CoRR abs/1404.0967 (2014) - [i17]Lila Kari, Stavros Konstantinidis
, Steffen Kopecki, Meng Yang:
An efficient algorithm for computing the edit distance of a regular language via input-altering transducers. CoRR abs/1406.1041 (2014) - 2013
- [j84]David Doty
, Lila Kari, Benoît Masson:
Negative Interactions in Irreversible Self-assembly. Algorithmica 66(1): 153-172 (2013) - [j83]Yuan Gao, Lila Kari:
State complexity of star of union and square of union on k regular languages. Theor. Comput. Sci. 499: 38-50 (2013) - [j82]Nathaniel Bryans, Ehsan Chiniforooshan, David Doty
, Lila Kari, Shinnosuke Seki:
The Power of Nondeterminism in Self-Assembly. Theory Comput. 9: 1-29 (2013) - [c62]Lila Kari:
Negative Glues and Non-determinism in Nanocomputations by Self-assembly. CiE 2013: 271-272 - [c61]Lila Kari, Steffen Kopecki, Shinnosuke Seki:
3-Color Bounded Patterned Self-assembly - (Extended Abstract). DNA 2013: 105-117 - [c60]Lila Kari, Steffen Kopecki, Amirhossein Simjour:
Hypergraph Automata: A Theoretical Model for Patterned Self-assembly. UCNC 2013: 125-137 - [i16]Lila Kari, Steffen Kopecki, Amirhossein Simjour:
Hypergraph Automata: A Theoretical Model for Patterned Self-assembly. CoRR abs/1302.2840 (2013) - [i15]Lila Kari, Steffen Kopecki, Shinnosuke Seki:
3-color Bounded Patterned Self-assembly. CoRR abs/1306.3257 (2013) - [i14]Lila Kari, Kathleen A. Hill, Abu Sadat Sayem, Nathaniel Bryans, Katelyn Davis, Nikesh S. Dattani:
Map of Life: Measuring and Visualizing Species' Relatedness with "Molecular Distance Maps". CoRR abs/1307.3755 (2013) - 2012
- [j81]Ehsan Chiniforooshan, Lila Kari, Zhi Xu:
Pseudopower Avoidance. Fundam. Informaticae 114(1): 55-72 (2012) - [j80]Bo Cui, Yuan Gao, Lila Kari, Sheng Yu:
State Complexity of Two Combined Operations: Catenation-Star and Catenation-Reversal. Int. J. Found. Comput. Sci. 23(1): 51-66 (2012) - [j79]Lila Kari, Zhi Xu:
De Bruijn Sequences Revisited. Int. J. Found. Comput. Sci. 23(6): 1307-1322 (2012) - [j78]Mark Daley, Helmut Jürgensen, Lila Kari, Kalpana Mahalingam
:
Relativized codes. Theor. Comput. Sci. 429: 54-64 (2012) - [j77]Yuan Gao, Lila Kari, Sheng Yu:
State complexity of union and intersection of star on k regular languages. Theor. Comput. Sci. 429: 98-107 (2012) - [j76]Bo Cui, Yuan Gao, Lila Kari, Sheng Yu:
State complexity of combined operations with two basic operations. Theor. Comput. Sci. 437: 82-102 (2012) - [j75]Ehsan Chiniforooshan, Mark Daley, Oscar H. Ibarra, Lila Kari, Shinnosuke Seki:
One-reversal counter machines and multihead automata: Revisited. Theor. Comput. Sci. 454: 81-87 (2012) - [j74]Yuan Gao, Lila Kari, Sheng Yu:
State complexity of union and intersection of square and reversal on k regular languages. Theor. Comput. Sci. 454: 164-171 (2012) - [c59]Lila Kari, Shinnosuke Seki, Zhi Xu:
Triangular and Hexagonal Tile Self-assembly Systems. Computation, Physics and Beyond 2012: 357-375 - [c58]Yuan Gao, Lila Kari:
State Complexity of Star and Square of Union of k Regular Languages. DCFS 2012: 155-168 - [c57]Lila Kari, Steffen Kopecki:
Deciding Whether a Regular Language Is Generated by a Splicing System. DNA 2012: 98-109 - [c56]Lila Kari, Steffen Kopecki, Shinnosuke Seki:
Iterated Hairpin Completions of Non-crossing Words. SOFSEM 2012: 337-348 - [p7]Lila Kari, Shinnosuke Seki, Petr Sosík
:
DNA Computing - Foundations and Implications. Handbook of Natural Computing 2012: 1073-1127 - 2011
- [j73]Bo Cui, Lila Kari, Shinnosuke Seki:
K-Comma Codes and Their Generalizations. Fundam. Informaticae 107(1): 1-18 (2011) - [j72]Lila Kari, Shinnosuke Seki, Steffen Kopecki:
On the Regularity of Iterated Hairpin Completion of a Single Word. Fundam. Informaticae 110(1-4): 201-215 (2011) - [j71]Elena Czeizler, Eugen Czeizler, Lila Kari, Shinnosuke Seki:
An extension of the Lyndon-Schützenberger result to pseudoperiodic words. Inf. Comput. 209(4): 717-730 (2011) - [j70]Mark Daley, Lila Kari, Shinnosuke Seki, Petr Sosík
:
Orthogonal Shuffle on Trajectories. Int. J. Found. Comput. Sci. 22(1): 213-222 (2011) - [j69]Lila Kari, Benoît Masson, Shinnosuke Seki:
Properties of Pseudo-Primitive Words and their Applications. Int. J. Found. Comput. Sci. 22(2): 447-471 (2011) - [j68]Lila Kari, Shinnosuke Seki:
Schema for Parallel Insertion and Deletion: Revisited. Int. J. Found. Comput. Sci. 22(7): 1655-1668 (2011) - [j67]Bo Cui, Yuan Gao, Lila Kari, Sheng Yu:
State Complexity of Two Combined Operations: Catenation-Union and Catenation-Intersection. Int. J. Found. Comput. Sci. 22(8): 1797-1812 (2011) - [j66]Eugen Czeizler
, Lila Kari:
Towards a neighborhood simplification of tile systems: From Moore to quasi-linear dependencies. Nat. Comput. 10(1): 103-117 (2011) - [j65]Bo Cui, Lila Kari, Shinnosuke Seki:
Block insertion and deletion on trajectories. Theor. Comput. Sci. 412(8-10): 714-728 (2011) - [j64]Lila Kari, Benoît Masson:
Polyominoes simulating arbitrary-neighborhood zippers and tilings. Theor. Comput. Sci. 412(43): 6083-6100 (2011) - [c55]Lila Kari, Zhi Xu:
De Bruijn Sequences Revisited. AFL 2011: 241-254 - [c54]Nathaniel Bryans, Ehsan Chiniforooshan, David Doty, Lila Kari, Shinnosuke Seki:
The Power of Nondeterminism in Self-Assembly. SODA 2011: 590-602 - [c53]Ehsan Chiniforooshan, Mark Daley, Oscar H. Ibarra, Lila Kari, Shinnosuke Seki:
One-Reversal Counter Machines and Multihead Automata: Revisited. SOFSEM 2011: 166-177 - [i13]